<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 00:04:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321776" ref_strand="+" ref_description="SGN-U321776        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | riboflavin biosynthesis protein-related, contains weak similarity to Riboflavin biosynthesis protein ribF. (Swiss-Prot:P08391) (Escherichia coli O157:H7) | chr5:7854132-7855816 FORWARD | Aliases: MKD15.19, MKD15_19(evalue: 2e-94, score=343) genbank/nr: gi|21553715|gb|AAM62808.1| unknown [Arabidopsis thaliana](evalue: 6e-93, score=344)">
      <seq>taggccgaatccatctcaattttcttttcttctgatgaaaattaagaatgttgagtgggtctcggtgtaattttcattgcagtgctcaccaatttgccaccattttagctgcttctacactgacctcagaatcttctttcaaaaattttagaatcagattgaggagcaggaacagtaatagttcttgtttgagcaataaagtttgtgattttggggtcaattgtgttcaacccaaatcttcagatacccaaagctctttgctttctgaaactttgagccaatctggaacagatgaggagcctccatcagaaagattgccaattcttacaggcgggatagtagctctggggaaatttgatgcactccatattggtcaccgcgagcttgcaattcaagcagcaaagagaggaattccatttcttctttcatttgttgggatggcggaagtacttggatgggaaccaagggctcccattgttgctgaatgtgatcgcaaaaggattctttcgtcttgggctccttattgcggtagtataatgccaagggaactccagatagatttttcgaaagttcgatatcttacgccttgtcagtttgtggagaagctttccaaagagctgggagtacgaggagttgttgctggcgagaattatcgttttggatatagagctgctggtgatgcatcagaccttgtgaagctctgtgaggagtatggattagaggcttatataatcaattctgtcatggacacaaatcaaatttctggagacttgaactctaaagacggtaaagagagagggcaagtatcatctactcgtgttaggtatgcccttcacaagggagacatgaaatatgtgtcagagctattaggtcggaaccatcgtcttattttaatgatggaagaccaagaaaggtttactagtgagagaaataggctgtctgctccaaagtcttgtttgttgaatcttgcacctaaggaaggtctttatgagaattgttcagttttgattgacaagagtgttattccctgcagagtaatagttgatacaacatatattcatttggaatcctatgaggtagctagtttttcctgtgttacttctcaagacttaaagatattgggtattgactttggcagtccaaagttagaaggggttcaaattttgtaattcattcccgataatttgttagtgcaaccatttctgaatgtccttcagtgtttaagtatgagtatgattttttaagcggtacctttctgctaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="6777" stop="1005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6477" g_stop="6201" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6200" i_stop="4343" i_length="1858">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.609" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4342" g_stop="4290" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="330" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4289" i_stop="3203" i_length="1087">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3202" g_stop="3067" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="466" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3066" i_stop="2189" i_length="878">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2188" g_stop="2013" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="642" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2012" i_stop="1926" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1925" g_stop="1306" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="1262" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1263" polyA_stop="1279"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-U321776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1262</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6477" e_stop="6201"/>
          <exon e_start="4342" e_stop="4290"/>
          <exon e_start="3202" e_stop="3067"/>
          <exon e_start="2188" e_stop="2013"/>
          <exon e_start="1925" e_stop="1306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGCCGAATCCATCTCAATTTTCTTTTCTTCTGATGAAAATTAAGAATGTTGAGTGGGTCTCGGTGTAATTTTCATTGCAGTGCTCACCAATTTGCCACCATTTTAGCTGCTTCTACACTGACCTCAGAATCTTCTTTCAAAAATTTTAGAATCAGATTGAGGAGCAGGAACAGTAATAGTTCTTGTTTGAGCAATAAAGTTTGTGATTTTGGGGTCAATTGTGTTCAACCCAAATCTTCAGATACCCAAAGCTCTTTGCTTTCTGAAACTTTGAGGTAATTTGTTGTAATTTTAATCGTAAATTTAGTGATTTTGGGTAATTTTGAGGTATTTATAGTAGATTCTTGTTTGAGCAGTGCAATTAGGGATTTGTTGAACCCAAATGTTCATATAACCAAAGCTCTTTATTTTCTGAAACTTTGAGGTAATTTATTGTAATCTGAGCAGTAAATTTAGTGATTTTTGGGGTAATTTTGAGGTTTCTATTGTAGATTCTTGTTTGAGGTAATGAAATTAGTGATTTTCGGCTAATTTTGAAATATTTATCGCAGATTCTTGTTTGAGCAATAAAAATTAGTGATTTATTGAACCCAACTGTTCATATAACCAAAGCTCTTTATTTTCTGGAACTTTGAGGTAATTTATTGTAATCTGAACAGTAAATTTAGTGATTTTTGGGGGTTATTTTGAGGTTTTTATTGTAAATTCTTGTTTGAGTAATGAAATTAGTGATTTTTGGGTAATTTTGATTTATTTATCATAGATCCTTGTTTGACCAATTTAGGGTCAATTGTGTTTGACCCAAATCTTTAGAGAGTTAAAGTTGTTCACTTTCTGGAAGTTTGATGTAATTTATCATACTCTTAGCAGTAAGTGGTAATTTATTGTAACTTATCTTCTTTGAACGGTGACTATAGTGATTTGTGGGGTAATTTGAGGTATTTATCATAATGTTCTTGCTTGAGTGGTAAAATGTTGTTATTTTGGGATTTGTTTTCATCAATGGTGTACAACCTAAAGCTCTTAACTTTCTGAAAGTTTGAGGTAATTCAACATATCTGTTATTGTTTGAGCATGAAATTGAGTGATTTATGCCCTCAGGGCTTTAGTCAAAGTGGTAAGAGCCCAATACGTGACGTTGGGTTAGGCGCACAACACGGGTTAGAACAGTGACACAGTCAAAAGCCTGGTATTTAAGTGTGGTTAGGGTAGAGGGGCGGGCCTGTCATTGGGCGAGTTTTGAACTGTGCACCGCTAGCCGTTGGGGATTTTTCGGTTATCAAAAGAATAAAAAATTGAGTGGTTCTGGGGGCTGTATTATCAGTTGTGTTCAACCTGAATATTTAGATTCCCAATGTTTATTGCATTTTAATAGTTTGAGGTAAATCTTTTATTTCCCCCTTAAAACCTTTTGTCATTGAAAAAACAAATATAGAAAAGGAAGCTCTTTTGTTAATCCTTGATTTGTAGGCTGTAATTGCGGAAAATGGAATGGGTGAATGGAAGGTTGGAAGCAGACCTTTATAAATGCAATAAGATGAAAGGGGAAAGTAAGTTAAAACTATAAGTTTGGATCACACTTTTGACGTCAACAATATTTAAAGTTTATTGGAATATCATATAAATATGGGCAGGTATGCCTTTCTGCTTACTAAACTATGGTGTGTTGACTTTTTATTGTAGATCTAAAATAAATAGATAATGTTATTTATCTCTTAAGTGTTTAAAGTTTTAGATGAGATGATTCACACACTTTAACTGGGCAACAGAGTAGAGAGTAGAAGGCCCCATGTTCGAGTCTTGTTTCCAATCATCTAACAAAATTGTTACGCATGCTTGGCTCAATAGAAAGAATCAGGTGCTGCACAAGAGAGCATGTTGTGACCTAAAATAAATAAATAAATAAGAGTGGCTTCCCTTTAATAATATGAGTTCTTAGATGAGACGGTTACACATTTAAATAGTTTCATCTGGACAGAGTATTTGGGATAGTTTTTGTTTTATGTTTAAATGAAGCTTACAAAGGTCTAAGAGCTTTTCATCCATTGCATTGACATTGTAATGCCATTTTGTATTCAAGTATGACTCTCCTTAGAATCTCAATGCTAAATCTGTGTTCTATTTCATGTAAAGCCAATCTGGAACAGATGAGGAGCCTCCATCAGAAAGATTGCCAATTCTTACAGGTTTGCTCGTATCCATATACTACTAAGTGATAAAATTATCAAACAATATTTCATGTATGCTGAATTTATATTAATACCCATTTTCATTTATTCTAACTCATGAAGTTTTTTCAATGATTAAATGCTACGTAGATGCCTTGGTAGTTGTTGTCAGCCATTCTTTATGTCATAATCTTTGTTGCATTGCTATATGGCTCTTATGCCTATTCTTTCCTTTTGTAATTTCTTTTATTTTTCTCTTCCTGGTTACTAAAGAAAATTTAGGAAATAGGTGTCAAGATTTGGCCATTTCTTTTAGTGTACATATTTATATGTCTGTGTACGTCAGTCTTCAGTTATACTGCAAGGTCAAAGAACAGCCCTTAGTATCACAGCTTAAAAACCCTGTAAAAACTGTTGAAATATGTTCCAATACATGAGTCATCACAAAGAGAAATATTGTCCATTCACTCATCAATTTGTTTTGTTAATACTTCAGACCTGATCTTTCAACATACTTTTTACTTTATTTTTGTATAAGAAATAAAGTTTTGATGGGACTTCAACTCCTATCTCTTCTCTCTCTTATTTTTTTTATTTTTTTTTAAAGAAAAACTCCTATCTCTTCTCTGAAGTTCAAGTGTTTGATCCTTCTTTTCAACTGGAGCAATTTAGCCCCTGTAAGTGATGTTATTCCTCTTGTAGATTTCATTAGCTCCTTGTCTTTGGCTTAACAGCCTTGGTCATTTAGAGAAATGGCTCAATGCTCTATCAGTAGTTTTTTTTGTATCTAGGAGCTTTCCCTTTTTCTCCTTTGTTCTCATTCAGCATCTTCTTGATGCCAGTCAATATGACAATTAATTCATAAAAAAAAAACTTTACTTTGTATAAGAAGATCAGGGGTAATCTAGCCGTGAATAGTTGAATGGTCAATCTGCAAGTTTGTTCTAAATTTACTTAGGACCTACAATTACTTTCTTCAAAGTTTTACTTCTAATTGTTGCTTATCATAAAAGAAATAAAGAGAGTTTCAATTCCACTTGTTACAATTGCATTGTAAATGAGAAGCAAATAGAGGATTCTCAATTATTATTTTTCGTTTCAATAGGCGGGATAGTAGCTCTGGGGAAATTTGATGCACTCCATATTGGTCACCGCGAGCTTGCAATTCAAGCAGCAAAGAGAGGAATTCCATTTCTTCTTTCATTTGTTGGGATGGCGGAAGTACTTGGATGGGAACCAAGGTATAACTTCTGTTGTCTCTTATGTTTTACGCTGCTGTCATAGAATGTTAAATAGAGAAATATTATCTCCTCGAAATACCAGAAAAGGACAGAAGGATGAACTTTGTCATGACTCGACTCTCACTGCTTCACCCAATCCTGTAATAGTACCTAGGATCAACTTTGAATTCTGAAAATACAAAAGGAAAGAGGATCATCACATCAGAGAGTTTTATCTTGCATTCTCTTAGTGTATGCAAGTCTTAACTTGTAGCAATATTCCACCCTAGCTCCTCTGATTTAGCATAACTCTATGGACCCGGTTGACACTCTTTCTCCAAAGCACTAGATAGTAACATTCTTGAGTTTAGGAATTTCTGTTAATAGGATGATCAATCAGAATATGTACAAAGAAGGAAGAAAATATATCCATATATTTTAGTTCATTTAAGTTTTAACGAAAAGCATAAAATAAAGAAATCAATCTCCACATCAGTATATTTTCCGACAGGAAAACTTAAGTTAATGTCCTCTATTCTTTTCTTCACTGCTTTTTGCGACAAGTGAAAGTTTGTGATGATTCCTTATAGCTTTTTGCTGTATCTTGTCCTTCATCTAAAATTCAAAGGATGTCCTTATCAACATGTTATACAATCTTGATTTGCTCCTTGGAAATAAAATATTTTCAAACGTTATTCTACTCAAGTAGTATATAGGATTAGTCATGGTTTAGAAAATTTGGTGTTTGAAGCTGGAAGGTGTTTACATCTGTTGAGTGTATCCTCCTAACCTTACTCAAGCTTACTGAGAAGTTCCTTTTTTGGTTAGTAGTCTTTATGAAATGCCATATCATGAAATGAGAAATAATATTTGTGAGCATGTGCATATTTTCAACCCAGGGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCGGTAGTATAATGCCAAGGGAACTCCAGATAGATTTTTCGAAAGTTCGATATCTTACGCCTTGTCAGTTTGTGGAGAAGCTTTCCAAAGAGCTGGGAGTACGAGGAGTTGTTGCTGGTATGTTGTAACATCCTAACTTGATATAGAGATTCCAATATAAACTAATAAAAGATAAAAAAGATGATGATGTCTTGATGACCTCAGGCGAGAATTATCGTTTTGGATATAGAGCTGCTGGTGATGCATCAGACCTTGTGAAGCTCTGTGAGGAGTATGGATTAGAGGCTTATATAATCAATTCTGTCATGGACACAAATCAAATTTCTGGAGACTTGAACTCTAAAGACGGTAAAGAGAGAGGGCAAGTATCATCTACTCGTGTTAGGTATGCCCTTCACAAGGGAGACATGAAATATGTGTCAGAGCTATTAGGTCGGAACCATCGTCTTATTTTAATGATGGAAGACCAAGAAAGGTTTACTAGTGAGAGAAATAGGCTGTCTGCTCCAAAGTCTTGTTTGTTGAATCTTGCACCTAAGGAAGGTCTTTATGAGAATTGTTCAGTTTTGATTGACAAGAGTGTTATTCCCTGCAGAGTAATAGTTGATACAACATATATTCATTTGGAATCCTATGAGGTAGCTAGTTTTTCCTGTGTTACTTCTCAAGACTTAAAGATATTGGGTATTGACTTTGGCAGTCCAAAGTTAGAAGGGGTTCAAATTTTGTAATTCATTCCCGATAATTTGTTAGTGCAACCATTTCTGAATGTCCTTCAGTGTTTAAGTATGAGTATGATTTTTTAAGCGGTACCTTTCTGCTAA</genome_strand>
        <mrna_strand>TAGGCCGAATCCATCTCAATTTTCTTTTCTTCTGATGAAAATTAAGAATGTTGAGTGGGTCTCGGTGTAATTTTCATTGCAGTGCTCACCAATTTGCCACCATTTTAGCTGCTTCTACACTGACCTCAGAATCTTCTTTCAAAAATTTTAGAATCAGATTGAGGAGCAGGAACAGTAATAGTTCTTGTTTGAGCAATAAAGTTTGTGATTTTGGGGTCAATTGTGTTCAACCCAAATCTTCAGATACCCAAAGCTCTTTGCTTTCTGAAACTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTGGAACAGATGAGGAGCCTCCATCAGAAAGATTGCCAATTCTTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGATAGTAGCTCTGGGGAAATTTGATGCACTCCATATTGGTCACCGCGAGCTTGCAATTCAAGCAGCAAAGAGAGGAATTCCATTTCTTCTTTCATTTGTTGGGATGGCGGAAGTACTTGGATGGGAACCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCGGTAGTATAATGCCAAGGGAACTCCAGATAGATTTTTCGAAAGTTCGATATCTTACGCCTTGTCAGTTTGTGGAGAAGCTTTCCAAAGAGCTGGGAGTACGAGGAGTTGTTGCTG.......................................................................................GCGAGAATTATCGTTTTGGATATAGAGCTGCTGGTGATGCATCAGACCTTGTGAAGCTCTGTGAGGAGTATGGATTAGAGGCTTATATAATCAATTCTGTCATGGACACAAATCAAATTTCTGGAGACTTGAACTCTAAAGACGGTAAAGAGAGAGGGCAAGTATCATCTACTCGTGTTAGGTATGCCCTTCACAAGGGAGACATGAAATATGTGTCAGAGCTATTAGGTCGGAACCATCGTCTTATTTTAATGATGGAAGACCAAGAAAGGTTTACTAGTGAGAGAAATAGGCTGTCTGCTCCAAAGTCTTGTTTGTTGAATCTTGCACCTAAGGAAGGTCTTTATGAGAATTGTTCAGTTTTGATTGACAAGAGTGTTATTCCCTGCAGAGTAATAGTTGATACAACATATATTCATTTGGAATCCTATGAGGTAGCTAGTTTTTCCTGTGTTACTTCTCAAGACTTAAAGATATTGGGTATTGACTTTGGCAGTCCAAAGTTAGAAGGGGTTCAAATTTTGTAATTCATTCCCGATAATTTGTTAGTGCAACCATTTCTGAATGTCCTTCAGTGTTTAAGTATGAGTATGATTTTTTAAGCGGTACCTTTCTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322350" ref_strand="+" ref_description="SGN-U322350        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | isoprenylcysteine carboxyl methyltransferase family protein / ICMT family protein, similar to SP:O60725 Protein-S isoprenylcysteine O-methyltransferase (EC 2.1.1.100) (Isoprenylcysteine carboxylmethyltransferase) {Homo sapiens}; contains Pfam profile PF04140: Isoprenylcysteine carboxyl methyltransferase (ICMT) family | chr5:2682230-2683713 FORWARD | Aliases: None(evalue: 3e-78, score=289) genbank/nr: gi|18415785|ref|NP_568191.1| expressed protein [Arabidopsis thaliana] gi|14334710|gb|AAK59533.1| unknown protein [Arabidopsis thaliana] gi|16323428|gb|AAL15208.1| unknown protein [Arabidopsis thaliana](evalue: 2e-76, score=289)">
      <seq>cttaattaaaataattacctcgccttcatcagatctggttgttggaaatgtcattcttaaaggatagtttcattgattctgaagcccattttgtggtgctaattgtacagagctcatcaacattttcaggtttggagttgaaatttgaaacatagcgtatcatattttcaagcctttgatgactcagactgagacctcattttagtaactttaacgagaggttttgtttgacttattcgcgtgaaatggcagagctttttggatatacagcatgcagacaattattgcaaatgttcatttcaattatattcttccatgtttccgagtacattctggcacttgtctttcatgggaagtcgaatgtatcttttaagtcgcttttgataagcaaacattatgtactagcaatgttttgctccttgatagaataccttattgaaatctatttctttcccggcttaaaggaatattggtggataagtaattttggcctcgcaatggttgtcctcggagaaatcataaggaagttggcaattgtgacagcaggccaagccttcactcatctaataaaggtttatcatgaggaaaatcatcagttggttacgaatgggatctatagatttgtccggcatcccggttactgtggtttcttcatctggtctgttggtacacaaataatgctatgtaatccaatatcaaccattgcattcacagttgttgtgtggaaattcttctcgggaaggataccttacgaggagtttttcctcaagcagttctttggttctgactacgaagattatatgagaaaagttccttctggtattccacttgtgaggtgattatatcctcttcagtgctctatatattcatgcctaacgtcatctgctcatcggtgctgagataacactgtttatgaattttatcttcttagacactctttacagttttcataacatgaagttcgccagaaaaaggttcctcctagatataacttctgaggtgatgcttctattaacccttgtatagcgcgtttatcttatttgtatcatcatgttttcgtcgtatcatgtctttgttaagacttaggtaaactgttcttgtggggagctgtaagttataactgtatttgtatttatggcttgatgggacagtgtttttatcatactcttaaggagaagaaaggctttgtaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="12734" stop="9901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12434" g_stop="12392" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12391" i_stop="11351" i_length="1041">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11350" g_stop="10207" g_length="1144"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="1187" r_length="1144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1190" polyA_stop="1214"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-U322350" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1187</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12434" e_stop="12392"/>
          <exon e_start="11350" e_stop="10207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATTAAAATAATTACCTCGCCTTCATCAGATCTGGTTGTTGTATGTAAATCTCCTTAATCTGTTCTTCGTTTAATCTTGCCCTCTTGGTTGAATTCATTTTATTTTGTGCATCTTCGGTATGTTTTCGTATTTGAATGAACTGAATTTGTTGTTTTCTGTTTTTGTTTCTGTTCTTCTTTTGTGGATTTAGGGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTAATTTATGGGGTAGCTTATCGTCTAGCTCACAGGTACAGGTTCAGTTTAGTGTTGCTGCTGATACTCGAACTGGGGATTTTTCAGTTTTTTTTTCAACTCACTAGGTCATTCCCTTGGGCGGGGTGAATTTTATAGGGCAATTTATGGTGTTCGTGAACCTATGGTATATCTATCAACTTAGATATTTTGGGTAGATACTCCGTTGAATTAATCTAATATTATCTGTTGACATTGATGCTACAAAAAAAGAAGCTTAAATGGTGCACTTGATGCTAAAAAAAAGTTCGTTGTTTTAATGGTGCAGCGATGTTATAAAAATTCTATATCTTCATCTGCCATTGTGGACTCATGATAGAACTCAATTTTCGAGTCATTTACTAAATGATACTGATGATATCTGTGCTGTAGATGTTGATTTCTAGGATAACTTTTTTATTAAGTTGCTTTTATCTCAATTAGTTCGTTAAAGAATGTGATAGTTAAATAGTTAATAACTTGTTATTTTTCATGATTTAGTGATGGGAGTGTTAAATCACAAGTTATCAAGTGTAGTGAAAATGTGCCTGAATCCGGTTAGTTTGGATAGGTGTTATGTTGATTGATTGATTTTTACTTTATTAGAGAGTCCAATATCTAAAAGCTCTGTATTGACCCCAAAATCCCATTGATAATGTTTGAAGAAGAACCGTGAGAGCTAAGGGATCACTATGATATCTAAGCTTACGTAGAGTAAGAGATTGTATAAACTGATATTGGAGACGAACTGAAAATGATCTTGTGTATAATGCACGTATAGAATCTAAGTTCTGTTATGTGATGTCTTTGTTCCTGAATGGTGCTTGCATAAATTTGCAGGGAAATGTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAGGTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATTCACAGTTGTTGTGTGGAAATTCTTCTCGGGAAGGATACCTTACGAGGAGTTTTTCCTCAAGCAGTTCTTTGGTTCTGACTACGAAGATTATATGAGAAAAGTTCCTTCTGGTATTCCACTTGTGAGGTGATTATATCCTCTTCAGTGCTCTATATATTCATGCCTAACGTCATCTGCTCATCGGTGCTGAGATAACACTGTTTATGAATTTTATCTTCTTAGACACTCTTTACAGTTTTCATAACATGAAGTTCGCCAGAAAAAGGTTCCTCCTAGATATAACTTCTGAGGTGATGCTTCTATTAACCCTTGTATAGCGCGTTTATCTTATTTGTATCATCATGTTTTCGTCGTATCATGTCTTTGTTAAGACTTAGGTAAACTGTTCTTGTGGGGAGCTGTAAGTTATAACTGTATTTGTATTTATGGCTTGATGGGACAGTGTTTTTATCATACTCTTAAGGAGAAGAAAGGCTTT</genome_strand>
        <mrna_strand>CTTAATTAAAATAATTACCTCGCCTTCATCAGATCTGGTTGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAGGTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATTCACAGTTGTTGTGTGGAAATTCTTCTCGGGAAGGATACCTTACGAGGAGTTTTTCCTCAAGCAGTTCTTTGGTTCTGACTACGAAGATTATATGAGAAAAGTTCCTTCTGGTATTCCACTTGTGAGGTGATTATATCCTCTTCAGTGCTCTATATATTCATGCCTAACGTCATCTGCTCATCGGTGCTGAGATAACACTGTTTATGAATTTTATCTTCTTAGACACTCTTTACAGTTTTCATAACATGAAGTTCGCCAGAAAAAGGTTCCTCCTAGATATAACTTCTGAGGTGATGCTTCTATTAACCCTTGTATAGCGCGTTTATCTTATTTGTATCATCATGTTTTCGTCGTATCATGTCTTTGTTAAGACTTAGGTAAACTGTTCTTGTGGGGAGCTGTAAGTTATAACTGTATTTGTATTTATGGCTTGATGGGACAGTGTTTTTATCATACTCTTAAGGAGAAGAAAGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346004" ref_strand="+" ref_description="SGN-U346004        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttttattttgtgcatcttcggtatgttttcgtatttgaatgaactgaatttgttgttttctgtttttgtttctgttcttcttttgtggatttagggttgagccgcctttgcttgtgtgcatctcgattaatttatggggtagcttatcgtctagctcacaggtacaggttcagtttagtgttgctgctgatactcgaactggggatttttcagtttttttttcaactcactaggtcattcccttgggcggggtgaattttatagggcaatttatggtgttcgtgaacctatggtatatctatcaacttagatattttgggtagatactccgttgaattaatctaatattatctgttgacattgatgctacaaaaaaagaagcttaaatggtgcacttgatgctaaaaaaaagttcgttgttttaatggtgcagcgatgttataaaaattctatatcttcatctgccattgtggactcatgatagaactcaattttcgagtcatttactaaatgatactgatgatatctgtgctgtagatgttgatttctaggataacttttttattaagttgcttttatctcaattagttcgttaaagaatgtgatagttaaatagttaataacttgttatttttcatgatttagtgatgggagtgttaaatcacaagttatcaagtgtagtgaaaatgtgcctgaatccggttagtttggataggtggtatgttgattgattgatttttactttattagagagtcaatatctannagctctgtattgaccccaaatcccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="12634" stop="11240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12334" g_stop="11540" g_length="795"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="793" r_length="793" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-U346004" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12334" e_stop="11540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTTGTGCATCTTCGGTATGTTTTCGTATTTGAATGAACTGAATTTGTTGTTTTCTGTTTTTGTTTCTGTTCTTCTTTTGTGGATTTAGGGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTAATTTATGGGGTAGCTTATCGTCTAGCTCACAGGTACAGGTTCAGTTTAGTGTTGCTGCTGATACTCGAACTGGGGATTTTTCAGTTTTTTTTTCAACTCACTAGGTCATTCCCTTGGGCGGGGTGAATTTTATAGGGCAATTTATGGTGTTCGTGAACCTATGGTATATCTATCAACTTAGATATTTTGGGTAGATACTCCGTTGAATTAATCTAATATTATCTGTTGACATTGATGCTACAAAAAAAGAAGCTTAAATGGTGCACTTGATGCTAAAAAAAAGTTCGTTGTTTTAATGGTGCAGCGATGTTATAAAAATTCTATATCTTCATCTGCCATTGTGGACTCATGATAGAACTCAATTTTCGAGTCATTTACTAAATGATACTGATGATATCTGTGCTGTAGATGTTGATTTCTAGGATAACTTTTTTATTAAGTTGCTTTTATCTCAATTAGTTCGTTAAAGAATGTGATAGTTAAATAGTTAATAACTTGTTATTTTTCATGATTTAGTGATGGGAGTGTTAAATCACAAGTTATCAAGTGTAGTGAAAATGTGCCTGAATCCGGTTAGTTTGGATAGGTGTTATGTTGATTGATTGATTTTTACTTTATTAGAGAGTCCAATATCTAAAAGCTCTGTATTGACCCCAAAATCCCATT</genome_strand>
        <mrna_strand>TTTTATTTTGTGCATCTTCGGTATGTTTTCGTATTTGAATGAACTGAATTTGTTGTTTTCTGTTTTTGTTTCTGTTCTTCTTTTGTGGATTTAGGGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTAATTTATGGGGTAGCTTATCGTCTAGCTCACAGGTACAGGTTCAGTTTAGTGTTGCTGCTGATACTCGAACTGGGGATTTTTCAGTTTTTTTTTCAACTCACTAGGTCATTCCCTTGGGCGGGGTGAATTTTATAGGGCAATTTATGGTGTTCGTGAACCTATGGTATATCTATCAACTTAGATATTTTGGGTAGATACTCCGTTGAATTAATCTAATATTATCTGTTGACATTGATGCTACAAAAAAAGAAGCTTAAATGGTGCACTTGATGCTAAAAAAAAGTTCGTTGTTTTAATGGTGCAGCGATGTTATAAAAATTCTATATCTTCATCTGCCATTGTGGACTCATGATAGAACTCAATTTTCGAGTCATTTACTAAATGATACTGATGATATCTGTGCTGTAGATGTTGATTTCTAGGATAACTTTTTTATTAAGTTGCTTTTATCTCAATTAGTTCGTTAAAGAATGTGATAGTTAAATAGTTAATAACTTGTTATTTTTCATGATTTAGTGATGGGAGTGTTAAATCACAAGTTATCAAGTGTAGTGAAAATGTGCCTGAATCCGGTTAGTTTGGATAGGTGGTATGTTGATTGATTGATTTTTACTTTATTAGAGAGT-CAATATCTANNAGCTCTGTATTGACCCC-AAATCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343303" ref_strand="+" ref_description="SGN-U343303        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, low similarity to SP:Q9FNS4 PsbB mRNA maturation factor Mbb1, chloroplast precursor {Chlamydomonas reinhardtii}; contains Pfam profile: PF00515: TPR Domain | chr3:5809272-5812683 REVERSE | Aliases: K14A17.11(evalue: 8e-13, score=71.6) genbank/nr: gi|15228944|ref|NP_188329.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] gi|20260426|gb|AAM13111.1| unknown protein [Arabidopsis thaliana] gi|30725484|gb|AAP37764.1| At3g17040 [Arabidopsis thaliana](evalue: 6e-11, score=71.6)">
      <seq>actcttttggatctctggttttattttgttttaccttcaataagtaacaggatacagaggggataatcttttctatgaggaagtgcaagtcttgattttttttccatataagccttgcttcttagaatctgttgaactatcgaaaagtttgagctattcgacaccaaatttctcttagtctttgaagtttatcggcttattctttcatctccagatagaaaccgatattcaatcaccattgtattccattaagtatatgacagtgttaccaaagtgtagatacaagtaaagcaatgagtcagttttcgtttacttcttcttcgagctctaatttcactctcttctatcattctcagaatcataatccttcaaagtttcatgtttctgctccctttagaacatcccaaccatcgccttcacatcctattttacctcccttatgttcccgtgatccgtcttcctcatcaccacttcttgaagaaaagccagaaacatcacaatcttcttctaagtttgatcctcaagatacactaagttacaatgatgaagtttctgaggagatcagcactacaaagaagtccttggaagagttacttgttgttcgtaggccggtgaaggagtcttccgtggaaaatgatgatgaaaaaggggaagcagtgagtaactttgaggattctcaagagaaaaatgatattctggaagaacaaccatcttcctcatcatttccacttgatgctggccttaaaaaatttgcaaaaaaagtgccaatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="16941" stop="19473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17235" g_stop="17275" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17276" i_stop="18441" i_length="1166">
            <donor d_prob="0.808" d_score="0.88"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18442" g_stop="19173" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="774" r_length="732" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-U343303" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17235" e_stop="17275"/>
          <exon e_start="18442" e_stop="19173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGT-GGATCTCTGGTTTTATTTTGTTTTACCTTCAATAGTAAGTCTCACATTTTACTTACACTTTCTCTTTTCAAATGTTGATAGCCGCAGAGGGCGGAGATAGAAGCTCAGATACTCTAGTGTTTGCTCAAATTATGTATTTTATGTTTACGAGATTTATTTAATATGTAAAAAAGTATCAAATTTAGAATCATGTTATAATGCTAAAAGTCATTGTTCTATAATTCAAAACTGATAAAATTGAAATTCTGGCTTCGCCTCTGCCGATATATATGTTCTTGTTGGTATAGATTTTGTTAAAGGTAGATAGAAAGTAGTTTGCAAGAACATACATTTTTGTTTGATATTTGAAGGTTATTCAAGTTAATTTAACTTGTATGAGATATTTAATGACATGTTCTTGGAAATTATTTGGAAGTAATTAATTTGGTTTGTGTGAGTTATCAAGCTGTGAACATTAATTTTGAAGTCTTAAAGGTGTGTGGATCATATTTCCTTTTCAAGCCCTTTTGCATAGTTTTGGTTTTATTTTGGGAAAATGCACAAGTAGCCCTTTAGACTATGGTCGAAATTCCAGAAACACATCTTAACTAAATTAAGGTCCTATTATCCCTGAACTTATTTGTTTTGTAATTTTATATCATTTTTGTCTTATGTGACACACTTCGTGACTCCACGCAATTGAGGCGTGTGAGAGATATTTGGATGCCACGGAAGCCAAAAAGGGGCACAAAATTACAAAAAAAAAAAAGTTCAGGGCTAATAGAACCTTAGTTTAGTTAAAGTGTGTTTTTGAGATTTCGGTCATAGGTGCTTGTGCATTTTTCCCTTTAGTTTAAGAAGGCATTATGTACTCTTTATTGAAAGCCGACCATTTCATCCAAAAGTTTAAGTCGTGGATCATGTTTCTTTTTTTTTTAGCCCTTTTGCATAATTTTCTTAGTTTGAGAAGGGAATACATACTCTGTGTTGAAGTACGACTATCTCATTCAAAAGCTTAAGCTGTTAGAGGTGAATAGAGATGTATTGATTGTATTATTTTATCGTCTTCCAATATGCACCTAATATGTGGCCTAGTTTCTTGCTACGGGTGAAAACACGTAGAAATTCTTTTTGATAATGGGTGTCAGTGAGACTCGAACCAAGAACCTCCGCCTGCCCCATGTTTAAGTGAGTGATCATTTTGTGTTGTTTATGTTTCAGAGTAACAGGATACAGAGGGGATAATCTTTTCTATGAGGAAGTGCAAGTCTTGATTTTTTTTCCATATAAGCCTTGCTTCTTAGAATCTGTTGAACTATCGAAAAGTTTGAGCTATTCGACACCAAATTTCTCTTAGTCTTTGAAGTTTATCGGCTTATTCTTTCATCTCCAGATAGAAACCGATATTCAATCACCATTGTATTCCATTAAGTATATGACAGTGTTACCAAAGTGTAGATACAAGTAAAGCAATGAGTCAGTTTTCGTTTACTTCTTCTTCGAGCTCTAATTTCACTCTCTTCTATCATTCTCAGAATCATAATCCTTCAAAGTTTCATGTTTCTGCTCCCTTTAGAACATCCCAACCATCGCCTTCACATCCTATTTTACCTCCCTTATGTTCCCGTGATCCGTCTTCCTCATCACCACTTCTTGAAGAAAAGCCAGAAACATCACAATCTTCTTCTAAGTTTGATCCTCAAGATACACTAAGTTACAATGATGAAGTTTCTGAGGAGATCAGCACTACAAAGAAGTCCTTGGAAGAGTTACTTGTTGTTCGTAGGCCGGTGAAGGAGTCTTCCGTGGAAAATGATGATGAAAAAGGGGAAGCAGTGAGTAACTTTGAGGATTCTCAAGAGAGAAATGATATTCTGGAAGAACAACCATCTTCCTCATCATTTCCACTTGATGCTGGCCTTAAGAAATTTGCAAAAAAAGTGCCAATTTTTG</genome_strand>
        <mrna_strand>ACTCTTTTGGATCTCTGGTTTTATTTTGTTTTACCTTCAATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAACAGGATACAGAGGGGATAATCTTTTCTATGAGGAAGTGCAAGTCTTGATTTTTTTTCCATATAAGCCTTGCTTCTTAGAATCTGTTGAACTATCGAAAAGTTTGAGCTATTCGACACCAAATTTCTCTTAGTCTTTGAAGTTTATCGGCTTATTCTTTCATCTCCAGATAGAAACCGATATTCAATCACCATTGTATTCCATTAAGTATATGACAGTGTTACCAAAGTGTAGATACAAGTAAAGCAATGAGTCAGTTTTCGTTTACTTCTTCTTCGAGCTCTAATTTCACTCTCTTCTATCATTCTCAGAATCATAATCCTTCAAAGTTTCATGTTTCTGCTCCCTTTAGAACATCCCAACCATCGCCTTCACATCCTATTTTACCTCCCTTATGTTCCCGTGATCCGTCTTCCTCATCACCACTTCTTGAAGAAAAGCCAGAAACATCACAATCTTCTTCTAAGTTTGATCCTCAAGATACACTAAGTTACAATGATGAAGTTTCTGAGGAGATCAGCACTACAAAGAAGTCCTTGGAAGAGTTACTTGTTGTTCGTAGGCCGGTGAAGGAGTCTTCCGTGGAAAATGATGATGAAAAAGGGGAAGCAGTGAGTAACTTTGAGGATTCTCAAGAGAAAAATGATATTCTGGAAGAACAACCATCTTCCTCATCATTTCCACTTGATGCTGGCCTTAAAAAATTTGCAAAAAAAGTGCCAATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326065" ref_strand="+" ref_description="SGN-U326065        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, low similarity to SP:Q9FNS4 PsbB mRNA maturation factor Mbb1, chloroplast precursor {Chlamydomonas reinhardtii}; contains Pfam profile: PF00515: TPR Domain | chr3:5809272-5812683 REVERSE | Aliases: K14A17.11(evalue: 8e-126, score=447) genbank/nr: gi|15228944|ref|NP_188329.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] gi|20260426|gb|AAM13111.1| unknown protein [Arabidopsis thaliana] gi|30725484|gb|AAP37764.1| At3g17040 [Arabidopsis thaliana](evalue: 7e-124, score=447)">
      <seq>ttgtgctagttggctggcatgggctcaactagaggctcagttagagaatgaccgttccgctaggcagctgtttgagaaagcagttcaagccagtccgaaaaataggttcgcgtggcatgtatggggagtttttgaagctaatctaggaaatattgatcaaggaaggaaacttctaacaatagggcacatggtgaatcctagagatcctgttcttctccaatcacttggtttgatagaatacaagaactccagtgcaaaccttgcacgagttctattccgaagagcgtctcaactagatccaaggcatcaaccagtttggattgcttggggttggatggagtggaaagaaggaaacatttccacagctcgagaactataccagaaggctctatcgatcaactcaacaactgaaagtgctgcgcgttgtcttcaggcttggggtgttttggagcaaagagctggaaatctatcagctgctcgaagactatttagatcgtctctgaacataaactctcagagctatataacatggatgacatgggcaaatttagaggaagatcaaggtaactctatccgtgcagaggaaattcgtaacctctactttcaacagcgtactgaagttgttgatgatgagtcgtggattatgggcttcttagacgtcattgacccagcgattgacagcataaagaggctcttgaatctagatcagaactcttactacaaggtaaaagagtctgcttctaatactactgctggagacgacgttgaggggagcacagaagaatcagcttctccctcctcggctaacgtcaatgacaataacatagatacaggaagtggctttgatttagatgattttatcagtgtaatgctgtctttagacccttcaaagctggaagttcagcttacaacatctcttaaggaccctccgaaaatcgccagaactactaatggggtgtggcgaccatcgacaaagactagtagaacatcaacaacactttgattttacaacaacaacgacatacttaatgtaacctcactagtgtggtctgggagggcggagaacgaaaggtgatgtgttgcagccttacctttacctcgtgaaggtagagagactgtttctgactcagctcaatataaagtttattgttctttagtgggaattgcaacattcattaatgttgtcaaatgaagaagtcttggtccacattttgtaaattacttaggaatattgagaagaattgtataaatttgattgtaagaagaaggcaaatctacacatataatcccccccacattgtataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="20234" stop="23097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20429" g_stop="20444" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20445" i_stop="20548" i_length="104">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20549" g_stop="20608" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="76" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20609" i_stop="21047" i_length="439">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21048" g_stop="21293" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="322" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21294" i_stop="21526" i_length="233">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21527" g_stop="21637" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="433" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21638" i_stop="21835" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21836" g_stop="22012" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="610" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22013" i_stop="22120" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22121" g_stop="22813" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="1304" r_length="694" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-U326065" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>1303</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20429" e_stop="20444"/>
          <exon e_start="20549" e_stop="20608"/>
          <exon e_start="21048" e_stop="21293"/>
          <exon e_start="21527" e_stop="21637"/>
          <exon e_start="21836" e_stop="22012"/>
          <exon e_start="22121" e_stop="22813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCTAGTTGGCTGGTAAGAGTCATTCAAAAACTTTAATCTGTCTCAGCTCTTTTCGAGTGGTTTATGCACATGTCATTTCTGGATTCCTTATAGTGGTTCTGTATTATCTTTTGTAGGCATGGGCTCAACTAGAGGCTCAGTTAGAGAATAACCGTTCCGCTAGGCAGCTGTTTGAGGTTTGTATTTTCTGAAGTTGATCCTTTCCTATCATCATTGAACATTTCCTTTTGGCATATTACATGAGCAATCACTCAAAGTTGGAGTGCTTAACTCAAATTTGGCTCGGCTAGGAAGTAAACACTCTACCTTAGAAGAGTGCACATCTGGTCTCAACTGACAACTAAACACTCCAACTCGTCCAATATTCATTTGGCACATAAATTTTGGAGGTGTCTAGATGATCATTTTGTAAGTTCGACTATTCAACTGACACAATGAAGACTAGTTGAGGTGTCTAGATGTGCACTTCCCGATTTTGAGTGTTTACCTGCTAGTTGAGGCCAAGTTTTGAGTGTTTGTTCATGTATTATGAGTTTCCTTTTAATTTGATGCCTCTGTCACTTTATTTTCAATTTTGTTTATAATTCTTGTACTTGATACTCCTAAACAAAGCAGAAAGCAGTTCAAGCCAGTCCGAAAAATAGGTTCGCGTGGCATGTATGGGGAGTTTTTGAAGCTAATCTAGGAAATATTGATCAAGGAAGGAAACTTCTAACAATAGGGCACATGGTGAATCCTAGAGATCCTGTTCTTCTCCAATCACTTGGTTTGATAGAATACAAGAACTCCAGTGCAAACCTTGCACGAGTTCTATTCCGAAGAGCGTCTCAACTAGATCCAAGGCATCAACCAGTTTGGATTGTAAGACCTTTCGTTTCAATAGTAAATGCTATAGAATATCGAATAAACTCATTTACTAAAAGACTCACTCGAATCGTTCAAGCTCTTGACATGGTTAATAGATGATGAAAGACTAAAAGAACTGAATACATTTGATGAACCTCATCACTGCCTTTTCCATATGTTCTCAACAGTCTTAAGATAATAAAACTTGTAACTTTAACAACTGAATACCTAACTTGGTACTGATTTAGGCTTGGGGTTGGATGGAGTGGAAAGAAGGAAACATTTCCACAGCTCGAGAACTATACCAGAAGGCTCTATCGATCAACTCAACAACTGAAAGTGCTGCGCGTTGTCTTCAGGTAATGCTCATTTCTAATAGATAGAGTAAGTTTCTAGTTTGCTTTTCGTAAGACATTTTGATGCAAATTGTGGAGGTTAGTCCAAACTCGTAACTCTGGCTTGCAGCTTAGTCTGTCCTTTGTTCCAACAAGTAGTATATTCTGGTTATATGTAATCTTCTCCACATAGGAAATGTACTAAAGAGTTGTTTACTATAGGCTTGGGGTGTTTTGGAGCAAAGAGCTGGAAATCTATCAGCTGCTCGAAGACTATTTAGATCGTCTCTGAACATAAACTCTCAGAGCTATATAACATGGATGACATGGGCAAATTTAGAGGAAGATCAAGGTAACTCTATCCGTGCAGAGGAAATTCGTAACCTCTACTTTCAACAGGTATATGAGTCATTTCCTTCTATGACCACATTTCAAGCATTGTTATACATCAGTGTTCCATATAGCTGCTCTTCTCCCTAACATCACTAGACGTTTTTGTTGACACAGCGTACTGAAGTTGTTGATGATGAGTCGTGGATTATGGGCTTCTTAGACGTCATTGACCCAGCGATTGACAGCATAAAGAGGCTCTTGAATCTAGATCAGAACTCTTACTACAAGGTAAAAGAGTCTGCTTCTAATACTACTGCTGGAGACGACGTTGAGGGGAGCACAGAAGAATCAGCTTCTCCCTCCTCGGCTAACGTCAATGACAATAACATAGATACAGGAAGTGGCTTTGATTTAGATGATTTTATCAGTGTAATGCTGTCTTTAGACCCTTCAAAGCTGGAAGTTCAGCTTACAACATCTCTTAAGGACCCTCCGAAAATCGCCAGAACTACTAATGGGGTGTGGCGACCATCGACAAAGACTAGTAGAACATCAACAACACTTTGATTTTACAACAACAACGACATACTTAATGTAACCTCACTAGTGTGGTCTGGGAGGGCGGAGGACGAAAGGTGATGTGTTGCAGCCTTACCTTTACCTCGTGAAGGTAGAGAGACTGTTTCTGACTCAGCTCAATATGAAGTTTATTGTTCTTTAGTGGGAATTGCAACATTCATTAATGTTGTCAAATGAAGAAGTCTTGGTCCACATTTTGTAAATTACTTAGGAATATTGAGAAGAATTGTATAAATTTGATTGTGAAAGAGATACAAATCTACACATATTAT-GAGTAAACATTGTATA</genome_strand>
        <mrna_strand>TTGTGCTAGTTGGCTG........................................................................................................GCATGGGCTCAACTAGAGGCTCAGTTAGAGAATGACCGTTCCGCTAGGCAGCTGTTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGTTCAAGCCAGTCCGAAAAATAGGTTCGCGTGGCATGTATGGGGAGTTTTTGAAGCTAATCTAGGAAATATTGATCAAGGAAGGAAACTTCTAACAATAGGGCACATGGTGAATCCTAGAGATCCTGTTCTTCTCCAATCACTTGGTTTGATAGAATACAAGAACTCCAGTGCAAACCTTGCACGAGTTCTATTCCGAAGAGCGTCTCAACTAGATCCAAGGCATCAACCAGTTTGGATT.........................................................................................................................................................................................................................................GCTTGGGGTTGGATGGAGTGGAAAGAAGGAAACATTTCCACAGCTCGAGAACTATACCAGAAGGCTCTATCGATCAACTCAACAACTGAAAGTGCTGCGCGTTGTCTTCAG......................................................................................................................................................................................................GCTTGGGGTGTTTTGGAGCAAAGAGCTGGAAATCTATCAGCTGCTCGAAGACTATTTAGATCGTCTCTGAACATAAACTCTCAGAGCTATATAACATGGATGACATGGGCAAATTTAGAGGAAGATCAAGGTAACTCTATCCGTGCAGAGGAAATTCGTAACCTCTACTTTCAACAG............................................................................................................CGTACTGAAGTTGTTGATGATGAGTCGTGGATTATGGGCTTCTTAGACGTCATTGACCCAGCGATTGACAGCATAAAGAGGCTCTTGAATCTAGATCAGAACTCTTACTACAAGGTAAAAGAGTCTGCTTCTAATACTACTGCTGGAGACGACGTTGAGGGGAGCACAGAAGAATCAGCTTCTCCCTCCTCGGCTAACGTCAATGACAATAACATAGATACAGGAAGTGGCTTTGATTTAGATGATTTTATCAGTGTAATGCTGTCTTTAGACCCTTCAAAGCTGGAAGTTCAGCTTACAACATCTCTTAAGGACCCTCCGAAAATCGCCAGAACTACTAATGGGGTGTGGCGACCATCGACAAAGACTAGTAGAACATCAACAACACTTTGATTTTACAACAACAACGACATACTTAATGTAACCTCACTAGTGTGGTCTGGGAGGGCGGAGAACGAAAGGTGATGTGTTGCAGCCTTACCTTTACCTCGTGAAGGTAGAGAGACTGTTTCTGACTCAGCTCAATATAAAGTTTATTGTTCTTTAGTGGGAATTGCAACATTCATTAATGTTGTCAAATGAAGAAGTCTTGGTCCACATTTTGTAAATTACTTAGGAATATTGAGAAGAATTGTATAAATTTGATTGTAAGAAGAAGGCAAATCTACACATATAATCCCCCCCACATTGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312461" ref_strand="+" ref_description="SGN-U312461        Tomato 200607 #1 [303 ESTs aligned] arabidopsis/peptide: | Symbol: None | glyceraldehyde 3-phosphate dehydrogenase A, chloroplast (GAPA) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit A, identical to SP:P25856 Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) {Arabidopsis thaliana} | chr3:9796330-9798282 FORWARD | Aliases: MLJ15.3(evalue: 3e-173, score=605) genbank/nr: gi|120661|sp|P09043|G3PA_TOBAC Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) gi|170237|gb|AAA34075.1| glyceraldehyde-3-phosphate dehydrogenase A-subunit precursor(evalue: 0, score=644)">
      <seq>gttttatggaaatcaggaaatgagtacaaaaccagcaattctggctcatttgtcatgttatattgtgtcactgaatctatctatcatccataatctcatccattttcttccctccattcattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaantccggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25243" stop="74571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25553" g_stop="25712" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="234" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="348" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="650" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="895" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28731" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="896" r_stop="1567" r_length="672" r_score="0.997"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28732" i_stop="28860" i_length="129">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.46"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28861" g_stop="28927" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1568" r_stop="1634" r_length="67" r_score="0.478"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-U312461" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>1560</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25553" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28731"/>
          <exon e_start="28861" e_stop="28927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTTCTGTATATGTTGCAAAGGAGCTCTTTGAAGACTTATTCCAGATAGGTAGAATGTACCAAAATGTTCTTCAATCTCGTGCATGTCATGTGGAAAGTTTAAATTAGAGAGTTGTCAAAACAAGAAAGAGACTTTCATTTGCTGAAACGGACTACAAAAAGAAAGTAGGACAAGTAAATTGAAACGGAGGG</genome_strand>
        <mrna_strand>ATCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTAAAAA.................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANTCCGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333580" ref_strand="+" ref_description="SGN-U333580        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | glyceraldehyde 3-phosphate dehydrogenase, chloroplast, putative / NADP-dependent glyceraldehydephosphate dehydrogenase, putative, similar to SP:P25856 Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) {Arabidopsis thaliana}; contains Pfam profiles PF02800: Glyceraldehyde 3-phosphate dehydrogenase C-terminal domain, PF00044: Glyceraldehyde 3-phosphate dehydrogenase NAD binding domain | chr1:4392448-4394350 REVERSE | Aliases: F13K23.15, F13K23_15(evalue: 7e-88, score=236) genbank/nr: gi|120661|sp|P09043|G3PA_TOBAC Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) gi|170237|gb|AAA34075.1| glyceraldehyde-3-phosphate dehydrogenase A-subunit precursor(evalue: 3e-91, score=251)">
      <seq>gaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttgtttgccctttnccaaanaaanaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccagccgtgaccctgtgaacctcccatggggagaacttggagttcacttagtcatagaaggtaccggagtttttgtagacagagaaagtgccggtaaacacatccaggccggagccaagaaagtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26552" stop="28275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26852" g_stop="27142" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.866"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="555" r_length="245" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28066" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="562" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-U333580" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26852" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACC----TT---C--T--C----AAA----TATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTAT</genome_strand>
        <mrna_strand>GAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTGTTTGCCCTTTNCCAAANAAANAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAGCCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTCACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAAGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAAGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312458" ref_strand="-" ref_description="SGN-U312458        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>ttttttttttttttttttttttatacagaagcggactgtataaagacaagaaaggggacttttattgaattgagatttcacaaggtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="74566" stop="28229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30483" g_stop="30463" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30462" i_stop="28747" i_length="1716">
            <donor d_prob="0.793" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28746" g_stop="28529" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="239" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-U312458" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312458" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30483" e_stop="30463"/>
          <exon e_start="28746" e_stop="28529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCATCTCTGTTGTCTTTGGTATACTAGGACTTGGTATGCTTGTCACTTTACTAATTTGTTTCTTGTTAAAGAAACCGAAAAGTGTGCCTGTTTCAAGTTCATTGGGTGAGTCTCTCATAAATGTGTCTTACCGAAGTTTGCTTCAAGCTACTAATGGATTCTCTGAAGACAACTTGATTGGTGCTGGTAGCTATGGATCTGTTTATAAAGGAACTCTCGATGGAGGAATAGTTGTCGCGGTGAAAGTGCTAAACCTCTCGCGACATGGAGCTTCCAAAAGCTTTATGGCTGAATGTGAAGTCTTGAGAAACACTAGACATCGGAATTTGGTCAAGGTTCTCTCAGCATGTTCAGGAGTTGACTATCGAGGGAACAATTTCAAGGCTTTGGTTTACGAGTTTATGGTTAATGGAAGCCTCGAAGACTGGTTGCATCCTCATCCAAGTGAAGATACAAGTCAGGCAGCAGAAACAAAAAAGTTGAATATTCTTCAAAGGCTCAACATTGCTATAGATGTTGCTTCTGCAATCGATTATCTTCATCTCCACTGCGAGACTCCGATAGTTCACTGTGATCTCAAGCCAAGCAACATTCTTCTAGACAACCAATTGGTCGGGCACATTGGTGATTTTGGTTTGGCAAAGTTCCTTCAACCAACTGCACAAAATTCTTCTATTTCAGAAGGAAGCTCTGCTCTCGTTAGAGGAACAATCGGTTACACTGCTCCAGGTAACAATTAATACATAAACAAACACTCGAACGCCCTTTTTTACTTGAAAATGATATATTCATAGCAAAATCAAGTCTTAATTGTTACACATATACTGCCATTACTTCAATAAAATCAAGTCATTGTAAGTTATGTTCCTATTAGGAAAGTTATTGTCCTTGTCTTATTACATCTTTTGTGAATTTTAGAATATGGGATCGGAAGTGAGCTATCGCCTTGTGGTGATGTGTACAGCTTTGGGATCCTTTTACTAGAAATGTTCACCGGAAAAAGGCCTACAGATGGAATGTTTAAGGATGGTTTAGACCTTCCAAGTTTCGCTAAACATGCATTGCTTTATGGAGCCATGGAAGTCATAGATCCATCCCTTATTTATGGAACTGAAGAAGATGAGCAAGGTAAAAGCACAAATATCTATCAGAATAAGGAGTTTCTTGTTTCTGTTCTTCGAGTCGGGGTTGCTTGTTCTGCATATTCTGGAGCTGAAAGAATGAACATCACTGAAACTGTTTCCCAATTGTACTCTATCAAGGAAGCTCTTTTGGAATCACAAAAAACTTCTGGAGCACATTAATCTATGTTACTCGAATCCTCCAAAAATGTAGTTACCTATGAGTATAATAAGTTTTTGCTTCAGTATTTAGTCCATTCATCACCTAATCTATGTTACTCGAATCCTCCAAAAATGTTGTCGCTCATGTGTCAGATCCTTCAAACATACATAAACTTTTGGAGGATCCGACACACACCTTGCATGTTGTTGAAGAGTTCGAGCAACCTATCACCAATTACATGATGTTGAACTACAGAATATCTTGTACTCCCCTCCGTTTCAATTTACTTGTCCTACTTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319645" ref_strand="+" ref_description="SGN-U319645        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | dentin sialophosphoprotein-related, contains weak similarity to Swiss-Prot:Q9NZW4 dentin sialophosphoprotein precursor (Homo sapiens) | chr5:25689692-25693972 REVERSE | Aliases: MHJ24.1, MHJ24_1(evalue: 2e-39, score=160) genbank/nr: gi|15237638|ref|NP_201222.1| expressed protein [Arabidopsis thaliana](evalue: 2e-37, score=160)">
      <seq>ttatattataactggcctgagatggaaaactttgaggatgttgacaggatgttcggaagttgtgattcaacatttggagttggagctagtatcgaagatgaccttggttggttttcgtcatctggtgttattgaaggatctggaggtggattgaggtcagatttggagtttgccttctcaacatccagtgcacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtattcagcagcacaagcaagttgatggatctgattttgggtattttcaggatggcttttcttacttatcttcagattacagtcattcagatcagactacggtttgtccaaccctatccacaattaaatctaaaaaaagctgtctcgtgactctttctgctaaggactcctgtgcgacaaatcagatgcagttgatggaaagcttacctgatccttcttttcaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaattccagcagaagtaggttcctctattgtaaaggagagctcttgcacaagttctgggttgaatgaaatttctgaggaggcagatagttttcatcagcttgaacatgtcatggaacggttggatgtaagaacaaagctacggataagggatagcttgtatcggttggctcagagtgctgaacaaaggcttagacatgctaatctcaataatggatctggtgatgatagtcacacaagcagagcatttgatgatgatggagcatacagatgcacaggatatttggacacggagacagacactaactctatagatcgatctattgctcacttactcttccacaggccttcaaactcatcagtgatggctgattctttggctttggagtcaccttccacgattttcgagacattactcagcccaccaatgattgatgagaacttgatttctgctggagaaaatgcagccgaaccagataaaggcacgaaatattaaacaggcttctatacaaatgggttgtgtttatttcaatttatgtcgcatggactcgcctacatgtatgtgcatgtaagtatctgctatggatacttatatactcttttgttgtttagtgtaattcgaagaatctaaacagtatgagaatgaggatctatgtcaaatagcttacagttactcgtgtgtttgtgtatgagaattatcaagaatctcaaatgagaaattatttcatgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="44850" stop="39147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44550" g_stop="44495" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44494" i_stop="44395" i_length="100">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44394" g_stop="44058" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="393" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41996" g_stop="41391" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="999" r_length="606" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41390" i_stop="40429" i_length="962">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40428" g_stop="40280" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1000" r_stop="1148" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40279" i_stop="40002" i_length="278">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40001" g_stop="39872" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1149" r_stop="1278" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39871" i_stop="39788" i_length="84">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39787" g_stop="39457" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1279" r_stop="1609" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1610" polyA_stop="1628"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-U319645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1609</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44550" e_stop="44495"/>
          <exon e_start="44394" e_stop="44058"/>
          <exon e_start="41996" e_stop="41391"/>
          <exon e_start="40428" e_stop="40280"/>
          <exon e_start="40001" e_stop="39872"/>
          <exon e_start="39787" e_stop="39457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGGGTAATTGTTGTCTCTAGTGTTTTTCATGTGATTTTCTTTTTTTATTCAGAGGAGACTGACTAATACTTTATGATTGCTCACTGTTTATAATATCTTCCAGAAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACCTTATTTGTGTAGGTCAATAGCTCAAACGACATGTGCAATGCTTTTAGATGGTTCTCAGCTGGATTAAGATAGTTTTTTAGTCGAGGGACAATATTAATGACAAACATATTATACAAATTCCTATATTCTGGGAAGGTTAATGATGTGCAGCTACACACTCTTGTAGCTTCACGCAGTCATAGAGAACTATTCTATTTTGTCAGGAAGTTGTCACACAGCATGCTGTAGCATTGTGCATACATCTGACTTTTTCTAACCATTCTAAATTAGAGATCTTTGTTATTTAATTGAGACATGTGAAGATGCTGAGTAAATAGGAACTCATTTGGTCCTCTTATTCATTATTTATATTTATACAGATCACATATTAAATTATTTTTTGTGTTAGAATAATTCATATTAGTGATGGCGTTTTACTAAGACTTATTTAGAAAAATCTTTGTTCATGTATATCTATAGTAACCTATATCATACTATTGCCTATAGCTACAGAATATAGATATAGAAAAGAGTATTTGTCTCTTAGTGCATGTTTGTGTTGCAGATAGCAATGCAGAGAGCTGATTGCTTATTTAGTACAACAGACAGCCTTAATATAAAAGCTGTTCCTCATCATCTTGCTGCTTGCTTATTTTAAATTATTAATCAGCGGATGTGCAAAAGCCTTCCAAAGTCTGACTTATCGTTGAGTGTCTTGAAACTATCTTTGTGTTAATCCTGTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTGGTATGTGGTTCTTCAAGTTTATACATTTAGTTGGAAATCAACTTTCTTTTCAGTACATGCATGTTTGTTAGCTCACTCTGTTGAGCCTTCTGGTTTAGTTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAGGTTGGTATCGTTTCTTGATGCCTTGGTCTACATGCATACTTCCCATATAGGCCGTATCATAGTTTGCATACTTCAAGCACACGGTATGTTTGGTTTAGTTAGTGAAGATCTTATGAAGCACATTTCTCACCCTTCGAGTTTGGAAAGTAAGTAGGTCTAGTCAGTCACACCTTGAATAAGCACTTTTCTTTTCTTGATACCAGTAATCATACTGGTAATGTGATAGATTCTGTTGGCTTCCTTTCTGTGGTCTTAACATCTATTGGCTTGTTTTTCAGATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACGGTAGGTGTTTCTGCATATGCTTCCAAAAATTTCATGTTCAACACCCTGTATCTCAAACACACCCTGCAACTTGTCAATGAACAGATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTA</genome_strand>
        <mrna_strand>TTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG....................................................................................................AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG......................................................................................................................................................................................................................................................................................ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG....................................................................................ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319644" ref_strand="+" ref_description="SGN-U319644        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | dentin sialophosphoprotein-related, contains weak similarity to Swiss-Prot:Q9NZW4 dentin sialophosphoprotein precursor (Homo sapiens) | chr5:25689692-25693972 REVERSE | Aliases: MHJ24.1, MHJ24_1(evalue: 1e-13, score=73.6) genbank/nr: gi|15237638|ref|NP_201222.1| expressed protein [Arabidopsis thaliana](evalue: 9e-12, score=73.6)">
      <seq>ctggaggtggattgaggtcagatttggagtttgccttctcaacatccagtgcacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaattccagcagaagtaggttcctctattgtaaaggagagctcttgcacaagttctgggttgaatgaaatttctgaggaggcagatagttttcatcagcttgaacatgtcatggaacggttggatgtaagaacaaagctacggataagggatagcttgtatcggttggctcagagtgctgaacaaaggcttagacatgctaatctcaataatggatctggtgatgatagtcacacaagcagagcatttgatgatgatggagcatacagatgcacagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="44611" stop="39978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44311" g_stop="44058" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41996" g_stop="41834" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="417" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41833" i_stop="41610" i_length="224">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41609" g_stop="41391" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="636" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41390" i_stop="40429" i_length="962">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40428" g_stop="40280" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="785" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40279" i_stop="40002" i_length="278">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40001" g_stop="39992" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="795" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-U319644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44311" e_stop="44058"/>
          <exon e_start="41996" e_stop="41834"/>
          <exon e_start="41609" e_stop="41391"/>
          <exon e_start="40428" e_stop="40280"/>
          <exon e_start="40001" e_stop="39992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACCTTATTTGTGTAGGTCAATAGCTCAAACGACATGTGCAATGCTTTTAGATGGTTCTCAGCTGGATTAAGATAGTTTTTTAGTCGAGGGACAATATTAATGACAAACATATTATACAAATTCCTATATTCTGGGAAGGTTAATGATGTGCAGCTACACACTCTTGTAGCTTCACGCAGTCATAGAGAACTATTCTATTTTGTCAGGAAGTTGTCACACAGCATGCTGTAGCATTGTGCATACATCTGACTTTTTCTAACCATTCTAAATTAGAGATCTTTGTTATTTAATTGAGACATGTGAAGATGCTGAGTAAATAGGAACTCATTTGGTCCTCTTATTCATTATTTATATTTATACAGATCACATATTAAATTATTTTTTGTGTTAGAATAATTCATATTAGTGATGGCGTTTTACTAAGACTTATTTAGAAAAATCTTTGTTCATGTATATCTATAGTAACCTATATCATACTATTGCCTATAGCTACAGAATATAGATATAGAAAAGAGTATTTGTCTCTTAGTGCATGTTTGTGTTGCAGATAGCAATGCAGAGAGCTGATTGCTTATTTAGTACAACAGACAGCCTTAATATAAAAGCTGTTCCTCATCATCTTGCTGCTTGCTTATTTTAAATTATTAATCAGCGGATGTGCAAAAGCCTTCCAAAGTCTGACTTATCGTTGAGTGTCTTGAAACTATCTTTGTGTTAATCCTGTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTGGTATGTGGTTCTTCAAGTTTATACATTTAGTTGGAAATCAACTTTCTTTTCAGTACATGCATGTTTGTTAGCTCACTCTGTTGAGCCTTCTGGTTTAGTTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAGGTTGGTATCGTTTCTTGATGCCTTGGTCTACATGCATACTTCCCATATAGGCCGTATCATAGTTTGCATACTTCAAGCACACGGTATGTTTGGTTTAGTTAGTGAAGATCTTATGAAGCACATTTCTCACCCTTCGAGTTTGGAAAGTAAGTAGGTCTAGTCAGTCACACCTTGAATAAGCACTTTTCTTTTCTTGATACCAGTAATCATACTGGTAATGTGATAGATTCTGTTGGCTTCCTTTCTGTGGTCTTAACATCTATTGGCTTGTTTTTCAGATGCACAGGA</genome_strand>
        <mrna_strand>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG................................................................................................................................................................................................................................GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG......................................................................................................................................................................................................................................................................................ATGCACAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326880" ref_strand="+" ref_description="SGN-U326880        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | dentin sialophosphoprotein-related, contains weak similarity to Swiss-Prot:Q9NZW4 dentin sialophosphoprotein precursor (Homo sapiens) | chr5:25689692-25693972 REVERSE | Aliases: MHJ24.1, MHJ24_1(evalue: 2e-05, score=37.7)">
      <seq>acaagtaattttggaagttgattttgattgtttgtaaatgagttccttctttgttgttgttttgttgctgtatgaatataaggaggagtgctttcagctaatgaattttttaattttattttttgctgtaaaaaaaaaaagagtaactttggaaaatggatgtttacttaaggtgagaagagttttaagcttatgaactgattttgcttgttgaaaaatgaaagagaagaaataaatttggaaattgaattttagttaaggagaagattttcagcttatgaaacggatttttagtgaaggagaggaatttatttgtcaaatacattgatagccttaaaaagagcagaactttcgtatctctaacggtggaaataatcttaccttaatccaaactatgatgatttcaatttaaagaaacaaattctgtgttctatttttgatttactcattttaaggaagcatcctctctagttgtttacagctaaaattctgtaactgatgctatagcttaaagatgtagctttggatgaagtttgcattagcgatgatcatatagtgccacatcctagttgtgaacatgccaatgaagtttctctcccagactgatagccgtaagaaaccccggtgtgaaataattggtttattaagaaccataggagcaatcttctcttaaatataataatcagcaaaagggcaaagaagttcctcctttatatagtacaatgatggagaaggactcgagggctggtaggcttgattgcgtgttcccttctaaacatgataaggactctgttgaagaagtttcaagtttatcatctgaaaatactaggacatcaaatgattgctccagaagtaacaatatagactccattagcggtgaggtccagcccaataaccccattctggatgacaagaattctgcagttagggacaacttgcatagctatcctcttggtcccgtttctcaggcagatgatgatcttggttttcttgatagtaatcatgaggataaaaagtagtaccgagctcttatattataactggcctgagatggaaaactttgaggatgttgacaggatgttcngaaagttgtgattcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="45878" stop="44179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45578" g_stop="44495" g_length="1084"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1086" r_length="1086" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44494" i_stop="44395" i_length="100">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.894" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44394" g_stop="44380" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1087" r_stop="1101" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-U326880" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1099</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45578" e_stop="44495"/>
          <exon e_start="44394" e_stop="44380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGAT-AAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG-GTAATTGTTGTCTCTAGTGTTTTTCATGTGATTTTCTTTTTTTATTCAGAGGAGACTGACTAATACTTTATGATTGCTCACTGTTTATAATATCTTCCAGAAGTTGTGATTCAAC</genome_strand>
        <mrna_strand>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGCTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCNGA....................................................................................................AAGTTGTGATTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330601" ref_strand="+" ref_description="SGN-U330601        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | CD2-binding protein-related, similar to CD2 cytoplasmic domain binding protein (Homo sapiens) GI:3983427 | chr5:2913535-2915924 FORWARD | Aliases: T5E8.190, T5E8_190(evalue: 2e-43, score=171) genbank/nr: AT5g09390/T5E8_190-related(evalue: 1e-49, score=198)">
      <seq>accgctctctcttcaatttgccccttcattttttttcctttctgaatccttcatatcaattgccgattacgccatggaagaaggttcatcgcgacgtgccaaacgtcccttcgttgaggacgatgactccaataaagctccagagcagaagcgtgtaaggttcccaaagggtaagaaggcaaagcagggcgataccacgattgatgggtgtgaagataaacctagtgggcggacagatcctcgcaatgcagccaaagagcgttcggcacggcggaatcaaataacagcggaactccttgatgaagaaaacgaaggtgaaatagctgacatatcgcgggcagaagtggaatatgaggaaaatgaaacattcattgatgatgggattgcaatagaaccttttaatctgaataaagagagagaagaaggttattttgatgcatcaggaaactatgttgaatatttaaatgaaaatgagataaaggatgcatggcttgatagtgttgatactgagaaaacatattctgggaagaaagctatcaagatatcaaatgaagatgagattcaagaccttacatcagaacaactaggaaagatgaagaggcgaattgctgatgtgctcgaaccaggagaaacagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="55877" stop="51638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55577" g_stop="55434" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55433" i_stop="53628" i_length="1806">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53627" g_stop="53417" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="355" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53416" i_stop="52296" i_length="1121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52295" g_stop="52170" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="481" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52169" i_stop="52093" i_length="77">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52092" g_stop="51940" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="634" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-U330601" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55577" e_stop="55434"/>
          <exon e_start="53627" e_stop="53417"/>
          <exon e_start="52295" e_stop="52170"/>
          <exon e_start="52092" e_stop="51940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGCTCTCTCTTCACTTTGCCCCTTCATTTTTTTTCCTTTCTGAATCCTTCATATCAATTGCCGATTACGCCATGGAAGAAGGTTCATCGCGACGTGCCAAACGTCCCTTCGTTGAGGACGATGACTCCAATAAAGCTCCAGAGTAACTATTTCCTTCCTTCTTTCTTTTTATTTTTTATTTTTGAAAAATTTCATGTGATTTTGTGCCCTAATTTATTCTGAACATACTTAGGGATTCTGCACAGATGAAAGCTCATATTCATTTGTTATATTGATTTCGGAATATAAAATTTGAGCTGTAAGTTTGTGATTTCTTAGTAAATAATATTTTGTATATGTTTGAAACATAGTGGTGAAACCCCAAGGGTGTGGCTTAGTGATTAATGAAGTGGTTGAGAATTCTGAGGTCTTATAAAACTCAGGGAAGACAACAAAGTTATTTGGTGGGAGGTGGGACGTATCCAATGTATTTGGATACCAAGGTCATTAAAATTAACAAAAAACTTCTCAAAGGGTGTGGCTTAGTGGTCAAGGGAGGTGGGTTGAGCATCATGAGGTCTAATGTTCAATTTCTAGTAGAGACAAAAATGCTAGATGATTTTTTTCTATTTGTCCTAGTTTTGGTGGACAGAGTTACCTGATAGTTGTTAATGGTGAGAGGTGGAATTAGTTGAGGTGTGGGAAAACTGGCGTGAACACCACAATCATAATAAAAACATAATGCGAAAGGAAACCAATTTATTTTACCATTGAAATTTAATGACATTGATTTCATAAAAAAGTGAATAAGGAAGGGTGTGATCTAGTGGTTAATGAAGTGAGTTGAGAACCATGAGGTCTAAGGTTCAAATTCCAACATAGAGAAGAAAAGTGATTTCTTTCTACCTGTCCTAGCCTTGAGGATAGAGTTACTTTATAGCTGTTTTGGTGGGGAGCGACAGATATCTATGTAATTAGTTAAGGTGCGCATAAGCTGGTCTAGTAACTACAGTTGTCTAAAAAACGAAAGAAGTGAACTAGGGGGAGTATTTTGTATCAATAGAAAGATAAAAATAGATAAATAAGTAAGGAAGCTCATTTTTGTTTTTATAACTCAATTAATTCTATCCTATGGGATCTCTACTACCTCCCATCCACATAGATATCACTTTACTGTGTCAATTGAGGCTTAAATAGATAGGGAGAATACACATAGTATTTTTTGCTTCTGCTGGGATTGATTTATTATGTCATTATTGTAAGAATTTTAGGAGCTTCCCAGAGGAGTTCAGGAGTATGTACTTGGATTTGCTTTCTTTCAGCTGCTATCTATTTTTGTTATTCTGCAAATGCGCCCAGATTCTATTAGCTTGTTTTTTCCTAATCTGAATTACCGTTGATTTCATATATGATGTGAACCTGGAGCAAAAATCTAGTGGGAATGGGTGGATTGTGTATTCTTAGTACCTAGAAAATGTCTAATAAAGAAGGGTGTGTTTGGCCTTGAGAGAACTATGCAAGAAAATACTTTATTTGTTGGAGATTTAAGGAATTATACAGTGACTATGCCTCATGCCCAAACTAATTGGATTAGTTATATGTAATCTCTATATCTATTTACTCTAACTGTGATCATTTCATTCCAGTGCTCAATAGTTTGTCTTTGAAGATAAAGTAGACTGCTTTCTTTTTCAGATTAGAGGTTGTATTTTGTTGTTGAGACTGTCATGAGTTTAGTACGAGAAAAAATAGATCTTTTTTACCTACTGTTATTTTCCTTGTAAAGATAATGTGTTTCATGAGACAGCAATAGCAAGTAATACAACTTCAAATAGCGTTTTTTTTTTCCATGTGACGTCTGCCATGCTCTATGACAACCTCATTTGTTGGGTTCAAAATAGTTTCATTTATGATGCTGGATTTTAAGGATGTTTGCATTGACATGTTGCTTTCTTCCTCAACATCACAGGCAGAAGCGTGTAAGGTTCCCAAAGGGTAAGAAGGCAAAGCAGGGCGATACCACGATTGATGGGTGTGAAGATAAACCTAGTGGGCGGACAGATCCTCGCAATGCAGCCAAAGAGCGTTCGGCACGGCGGAATCAAATAACAGCGGAACTCCTTGATGAAGAAAACGAAGGTGAAATAGCTGACATATCGCGGGCAGAAGTGGAATATGAGGTTTGTCCTTCCAATATCTGTTATTCCATAATTGTTTGATTGTAGTTAGGTACTTTGTGGATATCTGATGTCTACTTCATATCTCTTGATAAGGAAGTGATACTAGGATTATTACAAACTTTTTTGGGGCTTGGCATGATTTGTGCTGCGTGTTTAGCTAGAACAACTTAGATATGGGTAATCTTCTTTAAAAGAGCTGAGATATGGGTACTCATGCACAATTGAAAACCATAAATAATCATGATTGCTAATTATATTCCCCAAGTAGTAAGTAGTAACGTAAGCAAAATAGGGACCATCTGTAACTTCATTTTAAAAACCCCACTAATACATATCAATCCTTATGCTCTTGAAACAAAGGTCAAGGAGACAGAATGGTGTTTTTTCTTAGCATATAGCGGCTCATCAAAAGGAATAGCATAAGGTTGCATGCCATGTGTAAAGGAATCATCATCAAATAATTGTGCGCTTCACTTAATAAAGCATGTGCCTTACTTCTCTCCTATTCATTTCAAGCCTCGCAGACGCTTTTTTTGCACTTTTCACTTTTAAATTCACTGAGCATGAATCGTTGTTTCTGTGTCCAATAGGCTTGTCTCATTCTATCTTATGTAGAGTTCTTCCTTGGACTTTATGAACTGTGGGTTTTTGAACTTTACAAATAGAAAATGGGTAAGATTTAAATTCTGCACGTACTTTAATTTGCATAGAGATGAGAATAGGATTACAAAGAAGAAAAGAATTTATCTGAGTTCCCTTGAATAAATTTTTCCTGTTCTTCATAATTCCCTCGCCAATGAAACAATGGAAATAAAATTTGTAGCTTTACTTCCTTTGTTTCCTTCTGTTTTATTTTCCGAGCATTTTATTTCTTTTACTTAAACTCTCAAAACATAAATGTTAATTAAATTTCATTATTTCTGCTTCATGTGCTGTCACATTAAATTCGTGGAATTATATTGTTATTTGTTCTTTGGTTCGGCTCTCCAGCCTATAAACAAACTGAAGTACTTGGAATTATCATTAATGTCAAATTTTGCATATTCTAATTGCTCTATGGCTAAACTTTGTATTTCTTGTATTCCTTTCTGGTGTAACTAATGGAATATCTCTGGTTGCAGGAAAATGAAACATTCATTGATGATGGGATTGCAATAGAACCTTTTAATCTGAATAAAGAGAGAGAAGAAGGTTATTTTGATGCATCAGGAAACTATGTTGAATATTTAAATGAAAATGAGATAAAGGTGCTAGTCTTACATCAAACATTTTCTACCCCAGGCCCCATTCCTTGCATCTTTTCCTGATCTTAGTAAGTGTACAGGATGCATGGCTTGATAGTGTTGATACTGAGAAAACATATTCTGGGAAGAAAGCTATCAAGATATCAAATGAAGATGAGATTCAAGACCTTACATCAGAACAACTAGGAAAGATGAAGAGGCGAATTGCTGATGTGCTCGAACCAGGAGAAACA</genome_strand>
        <mrna_strand>ACCGCTCTCTCTTCAATTTGCCCCTTCATTTTTTTTCCTTTCTGAATCCTTCATATCAATTGCCGATTACGCCATGGAAGAAGGTTCATCGCGACGTGCCAAACGTCCCTTCGTTGAGGACGATGACTCCAATAAAGCTCCAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCGTGTAAGGTTCCCAAAGGGTAAGAAGGCAAAGCAGGGCGATACCACGATTGATGGGTGTGAAGATAAACCTAGTGGGCGGACAGATCCTCGCAATGCAGCCAAAGAGCGTTCGGCACGGCGGAATCAAATAACAGCGGAACTCCTTGATGAAGAAAACGAAGGTGAAATAGCTGACATATCGCGGGCAGAAGTGGAATATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGAAACATTCATTGATGATGGGATTGCAATAGAACCTTTTAATCTGAATAAAGAGAGAGAAGAAGGTTATTTTGATGCATCAGGAAACTATGTTGAATATTTAAATGAAAATGAGATAAAG.............................................................................GATGCATGGCTTGATAGTGTTGATACTGAGAAAACATATTCTGGGAAGAAAGCTATCAAGATATCAAATGAAGATGAGATTCAAGACCTTACATCAGAACAACTAGGAAAGATGAAGAGGCGAATTGCTGATGTGCTCGAACCAGGAGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316159" ref_strand="+" ref_description="SGN-U316159        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5014749-5016599 REVERSE | Aliases: T5E21.12, T5E21_12(evalue: 7e-85, score=310) genbank/nr: hypothetical(evalue: 3e-91, score=338)">
      <seq>ttagggtttatgaaaatgcagaggtgctgttcatctgcgataggtaaacgatggttttcttcattcaacaatgataaaattgtggcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcaatatcggcgagagtatccagaaagttttctgaagaagtctgataccaggggaaaaggtgattatcaaattgattataaaccagctcctcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaagagactctatcttctagtccatggtaccacacaaggtagtggaaagcctgtctggcatttccctgaaaaagtttatgagtctgaagagaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaagaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctgggtgaccaaagatgaactgttggaatactttcccgagcaagctgaattcctgaacaagatgatcatcagctgacgttagtttctgctcaaacttcaggcttcgtaggatagcggaaatagttttgatctgaaaaatccatttcttcccgcaaatgcaatgggcttggactgctggagactgatttttatgtctcgacagtctgactagcatgccattcatcaagtcctgtagaattttgaacataggatacctaaattatgatagccttctgcctcagctatcaccaatcctctttgtgagaagctatgctaaaaactctgaaatagtcatgaattttagtatgaatatgcttttgtagatgcacgatttcatctcgcgtcataaaataaacaaaacaaattacatgttgcagccttaacgagttgcgagctttgtttcatagctgcattgtgcatagagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82259" stop="78927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81959" g_stop="81799" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="227" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="302" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="426" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80037" g_stop="79915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="549" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79761" g_stop="79239" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="1072" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1079" polyA_stop="1090"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-U316159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1072</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81959" e_stop="81799"/>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79915"/>
          <exon e_start="79761" e_stop="79239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTTTCATAGCTGCATTGT</genome_strand>
        <mrna_strand>TTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTTTCATAGCTGCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335513" ref_strand="+" ref_description="SGN-U335513        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5014749-5016599 REVERSE | Aliases: T5E21.12, T5E21_12(evalue: 3e-07, score=52.8) genbank/nr: hypothetical(evalue: 7e-09, score=64.3)">
      <seq>gaaaatgcagaggtgctgttcatctgcgataggtaaacgatggttttcttcattcaacaatgataaaattgtcgcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtaagtttttcttttttttctgttcaattgttgcacgaaatcgatcctttttgtaatccaattacaatgatttacttttagagcgataaattctggttcatataatagaatgatcaaaacatttactagtgttgattttttttttcgctttctaaaaactgtgatggttaattagggattaaggggtactctgatatgtttgcttgcgaaaaatagtactcaaaaacaataattatgcctcaattgcattagtcaggtcaaattatgaatcttcactattttgtaagtttgatgaagtaaatctacaaaagaaaatagtttcttttgtccaaaattttgcagtggtttctaatgcttaggagataatgtgtaatgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82248" stop="81116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81948" g_stop="81416" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-U335513" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81948" e_stop="81416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATT-T---T--A-TGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGT</genome_strand>
        <mrna_strand>GAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTCGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTCTTTTTTTTCTGTTCAATTGTTGCACGAAATC-----G------ATCCTTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAAATTCTGGTTCATATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTCTAAAAACTGTGATGGTTAATTAGGGATTAAGGGGTACTCTGATATGTTTGCTTGCGAAAAATAGTACTCAAAAACAATAATTATGCCTCAATTGCATTAGTCAGGTCAAATTATGAATCTTCACTATTTTGTAAGTTTGATGAAGTAAATCTACAAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335512" ref_strand="+" ref_description="SGN-U335512        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5014749-5016599 REVERSE | Aliases: T5E21.12, T5E21_12(evalue: 3e-07, score=52.8) genbank/nr: hypothetical(evalue: 7e-09, score=64.3)">
      <seq>aaaatgcagaggtgctgttcatctgcgataggtaaacgatggttttcttcattcaacaatgataaaattgtcgcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtaagtttttcttttttttctgttcaattgttgcacgaaatcgatcctttttgtaatccaattacaatgatttacttttagagcgataaattctggttcatataatagaatgatcaaaacatttactagtgttgattttttttttcgctttctaaaaactgtgatggttaattagggattaaggggtactctgatatgtttgcttgcgaaaaatagtactcaaaaacaataattatgcctcaattgcattagtcaggtcaaattatgaatcttcactattttgtaagtttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82247" stop="81200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81947" g_stop="81500" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-U335512" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81947" e_stop="81500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATT-T---T--A-TGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGA</genome_strand>
        <mrna_strand>AAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTCGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTCTTTTTTTTCTGTTCAATTGTTGCACGAAATC-----G------ATCCTTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAAATTCTGGTTCATATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTCTAAAAACTGTGATGGTTAATTAGGGATTAAGGGGTACTCTGATATGTTTGCTTGCGAAAAATAGTACTCAAAAACAATAATTATGCCTCAATTGCATTAGTCAGGTCAAATTATGAATCTTCACTATTTTGTAAGTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326781" ref_strand="+" ref_description="SGN-U326781        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT3G46730.1 | Symbol: None | disease resistance protein (CC-NBS class), putative, domain signature CC-NBS exists, suggestive of a disease resistance protein. | chr3:17224054-17226597 REVERSE | Aliases: T6H20.240 (evalue: 4e-55, score=211) genbank/nr: disease(evalue: 2e-55, score=218)">
      <seq>tgtgttttcagccttgaccactcgatcttctggaaacataccaaagtagagaaaacactgcttgagctcaattgacaaatcattgtagcttagtgatagtatgttggagatttcaacagatttatcttctttaatgctcttccaaaggtgatctttcaccttttgccattcatctagatcctttttatgcgaaagtagtccgctcaatacaacaattgcaagaggtaaacctctacacttttccaccatatccttagctagactttccatttctgcaaccattgctcgaacatcaagtagtttcctaagaaagagatcccaactttcttcttgacttaggaaacgaagtttatgaacaaaacctctgtcggctgctctttcagcgatatcctctttgcgcgtggtaataatgactctgctgccattcttgtcatccgggaatgctcttttcaaactttcccatgcttctctttgccatatatcatcaaccactacaaggtatttgcgttctttcagtagatcacgaaggtgattttctagatctctttcatccatcttttccaacaatcctagagttcccatggtgcaaccttggatggattttatgatagtcttaagaagatccattgtgttgtactcttgagaaacacatatccaagcacgtgtaggccaggtattgactatacgaggacttctgtagaggtttcttgcaagagtggtcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="85249" stop="83925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84949" g_stop="84225" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-U326781" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84949" e_stop="84225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTTTGCCAGACATCATCAACCACCACAAGGTATTTGCGTTCTTTCAATAGATCACGAAGGTGGTTTTCTAGATCTCTTTCATCCATCTTTTCCAACAATCCTAGAGTTCCCATGGTGCGACCTTGGATGGATTTTATGATAGTCTTAAGAAGATCCATTGTGTTGTACTCTTGAGAAACACATATCCAAGCGTGTGTAGGGAAGCGAGAGGATATATTAGGATTTTTGTAGAGGTTTCTTGCAAGAGTGGTCTTGC</genome_strand>
        <mrna_strand>TGTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTTTCCCATGCTTCTCTTTGCCATATATCATCAACCACTACAAGGTATTTGCGTTCTTTCAGTAGATCACGAAGGTGATTTTCTAGATCTCTTTCATCCATCTTTTCCAACAATCCTAGAGTTCCCATGGTGCAACCTTGGATGGATTTTATGATAGTCTTAAGAAGATCCATTGTGTTGTACTCTTGAGAAACACATATCCAAGCACGTGTAGGCCAGGTATTGACTATACGAGGACTTCTGTAGAGGTTTCTTGCAAGAGTGGTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327528" ref_strand="+" ref_description="SGN-U327528        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>gtcgccgataatcagtggattttcacctatttgagggtgtactttgaggaaggtgaatgctcaaattcgtcattctttttagtggaaaaatacatctcgagatgatggaaattgaaattgcgtccctttaccactacgtataagctggtcaagctgattttgagttgttttcggtacaacttttagcttgaatattctgagtgtcctcctttctctcgactgagtagcttttactctacaagaaattcatctgctagagtagttctgcaaaagaaaagcaatcaaaataatggatgatcgggttgttcttgacaagggtggaacaaggaagttgcctcagtggatgtttgctacatctgctgctgatcaagtaaaggaaaaagccaaaactgataaagtagacaataataatactacagagaaggagattgtcactcagaaacagaaaaatagaaggattaaggataaaaaggaaacattcactgaggagtcgtccactcagcttccaatatgccaaacaacaaaaagaagcagaagaaaattaaacctaccaaatgattattgtaatgatgaaagcacttcaatggggagtgaatgtgacagcaagcaagcaagtggtgatggagaggttcctatgttgaggagacagaaacagaaaacgaagaattccaagactgagagagttgctgagatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="97152" stop="93155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96852" g_stop="96818" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96817" i_stop="94116" i_length="2702">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94115" g_stop="93455" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="696" r_length="661" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-U327528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96852" e_stop="96818"/>
          <exon e_start="94115" e_stop="93455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCCGATAATCAGTGGATTTTCACCTATTTGAGGTAAGAATCGAACCCCATAGCTGTGAATTTAGCTTATAATCTTCATATATATGAAGTACAGTTGAATTAGGGATGAAATTGTGACGGGATAACTTTGGTAATTGTGGGTTTTCATTTCAAGCATATTTAATTGTATTTTGTTGTCCGATTGATATGCAAATCGAGTGTAAAGTTTCTGTTAGCTTATCATACCATTGTCTACTTGTCTGTTTTAAGCCATACGGACACTTTTTGAGTCTCCACACTAGTCATGGAGCATCCACTTAGACTTCTCCATGCAAGTTTCCATGGGGAACGCATTATTGACATCTAGTTCCACTCGATGTACGGAGTCTACCTTGGAGATCCGATTAAATTCGGATGACACACGACAAGGTCCACTTAGAGGTGGCGCTCCCAACAAGATTTTTCTCTATAGCTAGGGCTTGAAGGAGACCTCTGGATAAGGGTGAAACACTCCCACCAGTACACCACAACCCATGTTGGTTATTGACATCTATTTGATAAAGCTACTATCCTTGTTTGACAACTACATTGATTAAAGTCTCCACAATGGTCAAGATGACCATTGGTGAAAATGTTTCAATGTAGTCAAGTGTACCCTTTGCCCACCAACCTAGCCTTGAACCTTGCTACACTTCCATGTCCGCTGTGTTTGATCTTGTAAACCCACCTACAACCCATTGCCTTCTTTCCTGCAGGTAGATTAGCCGAATGCTAAGTTTGGTTAGCATATAAAGTCTAAAATTACCGTGTCATGGTTGGTTGCCATGCAGGATTCATAGCTACTCTCTCATAGTAATTAGGTTCTCTTATCATAAGAAATGTTTTGCATAACCGGCTGGCTATCAGGATCCAGTGAGATGAGGGGAATTTTTCCAGTGTTGGTGAAAAGGGCACTGAGAGATGGAGAAGGTTCTTAGACCTGGTCTTTCAGAAGGGGAAGATAATAGACAAATTCCATCAAATGAGGTGGGGTATTGTGGATCCTACATCCTAGAGTATCTCCTAGGAGCAGGTATGTCTAAGTGGCTACTAGAAGTGGATGGTGGCAAGGTCTTATCAAAGAAGGATGATTGATGAGGTTGATAGGATGATAGACTTTGATCTGCAAGTAAAGGAGCGTATCGGTAGGACTGGCAGTGTGAAGTATCAATCTGTTAGAGTCAAGAGGAGCAGTAACAGAAGGTGGAGTGTTCTTGGTGTGCAATTGACATTCATCTAAAGTATGTAATTCTGTATAACATTGATATCACACATAGCTGTGGTCTTACAAGTATCACACATTTAGACAAACAATTATTCATAGGTTGAGAGCTTCAAAAAAAATATTTCATAGGTTGAGAAAAAGCAACAGGAACATAAAGTGAAACATGACATGACTCAGTAAATTGGCACTTCGCGCAGAGAAAGTATATTATGAAGTTGGGTTTGATGTCTAAATTCTGTGTTGCTTTATGGATTCATTTGACGAATTGAGTAATTTTACTGGGAATTGCTGGACTTGAACTGTGACATTTTTTTTCCTTCACAAAAAACATGATTTTGGAAGTTTTATTGTTAACAGTGAGCATCTATGTTCTATGGATTTTAATTTCTTTTCTCATCCCAAAGAAATCAAAACAAGATATAAGAAAAAGAGAGCAAAACAATAGAAAAAACTCCAACGCAGCTTCAAAACTTTTTTTTTTTTGGTATTCAGTATCTAAGTGACATGTACTTTCTCAACTGACTCTTGTGAAAAACTGATGTGTGACATCTTTTTTCTGTTTTGTTGGTATTTTGTAGTGGTATTTAGTGTCATTTATGTCATTGATGCAATCTTGATATTAATTACTAGCATGAAATGAATGTGACACATCATTTAATTAGACGGAAGATGGATTAAAGAGGAAGCCATCTGGAAGAAGGCCCTATGTCGAAAACATTTAAACAGTTACACTCTTTAGTGTGTGTTCATCGGAACTGGGGGTTAACCATGATGTTTTCCAACTCGATGAGTTTCTCCATATCGAGCAATTAATAGTCTTAATAATCAGATTCAACAGTAACATATTACATAAAACATTATCTTAAATGTGGATAAGCAAGATAACTTACCGCAGACCAATTAATTTATGTTAACACTAGCATTTATGCATAGAATGCCAAAACCAATTCTCTTCAAACCAATTCCACACGCACAAAAAGAAATTAAACACTACTGAAGACATTGACTCTCTTTGGCAGCCCTGAAATAATCAGCAAAGCGGCAGAAACCTGTTTAATGCTTTTACAATCCAACTTCATTTATGCATATGTCTTCAAGTGCTTGTCAAAAATGGATCAATAAAAGACAGCTTCTTTTCCCGTTTTACCCAAATTGTAAGACACTTTTTAACATAATAACTAGTAGTCAATAAAAACGAAAAGATTTATCAATTATTTAAAATAATGATTTAACTATAATGTTCAAGGCATTATAGTTACATCTAATTTTTTTTATAGATTATGTGGGGAAGGTACAATCCTCAAAAATATTGTACATAGTTTTGAAAATTTTATAATTTCTCTTCAAAGTTATATATGTTATTACTACTGATTCTTGTGTGCTTACTGGTACCCGCTTCATAAGGACTTCCTATAATATAAGCCCAAAGTTTGTGGTTGATGCTTAATCATGGGAAAGAGGATTTATTTTCTCCTTTTGTCTACTTTTACAGGGTGTACTTTGAGGAAGGTGAATGCTCAAATTCGTCATTCTTTTTAGTGGAAAAATACATCTCGAGATGATGGAAATTGAAATTGCGTCCCTTTACCACTACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAACGAAGAATTCCAAGACTGAGAGAGTTGCTGAGATGGA</genome_strand>
        <mrna_strand>GTCGCCGATAATCAGTGGATTTTCACCTATTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTACTTTGAGGAAGGTGAATGCTCAAATTCGTCATTCTTTTTAGTGGAAAAATACATCTCGAGATGATGGAAATTGAAATTGCGTCCCTTTACCACTACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAACGAAGAATTCCAAGACTGAGAGAGTTGCTGAGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329894" ref_strand="+" ref_description="SGN-U329894        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT3G19950.1 | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) | chr3:6942775-6945199 FORWARD | Aliases: MPN9.20 (evalue: 1e-52, score=203) genbank/nr: gi|11994207|dbj|BAB01310.1| gene_id:MPN9.20~unknown protein [Arabidopsis thaliana](evalue: 8e-51, score=203)">
      <seq>tcgttatcgaggggggtaacgggggtagtggtctccaaatgccggcgaattatggggactatttcattggaccggggtttgagcaattgatccagaatttggcagaaaatgatccaaaccgatatgggactcctccggcgtcgagagcagcggtggaggggctccctaccatcaaagttgatgaggaattgatgcgttctgaactggcacagtgtgctgtttgtaaggatgattttgagatggggtcagatgtgatacagatgccttgtaagcatgtttatcataaggattgtatcataccgtggcttgagttgcacagttcttgcccggtttgtcgctatgagttgccaacggatgagcctgagaatgagaacaggcaaagagacaatgatggggactcgagcggggatggttctgcttctggaagtgggggatcagggagaaggtttactacaatatcattgccatggcctttgggaagctttggagcatcatctagccagggatgatccgagtctcgtgggcagcggaacagggagtctaattaggtggtatccttgcttgcaggttgtatcatggatgacaaagttggaggagttgttgggtagataattagaaaatgctacaaaggtaaaggattaggtttcatctcttaaaacatagatacagggtctacacaaaccccagatagtattgcaagatgtttgtctgaatgttttgcatcagatgtccaaagttttcatttatgcttcatcaatcgcgaattttgcggattgttttagtccttgtgcagttgatctggaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="99670" stop="104711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99970" g_stop="100517" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100518" i_stop="104155" i_length="3638">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104156" g_stop="104408" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="801" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="803" polyA_stop="816"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-U329894" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99970" e_stop="100517"/>
          <exon e_start="104156" e_stop="104408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTATCGAGGGGGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAGGTAGAGATATACAAACCATAATCGTCTTAATTTGATTGTTCAATTCATTTGATTCAAATTTATACACGTGACTTGCTGATCGAAGCTAAAATTGTACTTGTTCATCGATTTTTGTGACTATCTGTTATTTCGTGTAGTTTGTTTGTAGTATTACTTTGTTGTAGTACTATTATGTTCCTACTTGTTGTTTTGTTACTTTGTATTGTTGATTGTACTTTCAGTATTTGTTATCGTACTATTTTGACTTGAGCCGGGGGTCTATCTGAAACGGCCTCTTTATCTCATCTCTAGGTAGATATAAGGTTCCGTACACTCTAACGTCCCATACCCCACTGTGGGATTACACTGGATATGTTGTAGTTGTTGTACTCTTAGTTGCGCGGACTCTTCACTTTTGATGTCGCACCTGTCTCGGATTCTTCAAAATACACTACTTTTGACGAATTCGACATGCACCTGTTCGCATTTTTGAAGAGTCCATGCAACATAGGTTGTACTTGACGTCAGGAGTTGATATACCCAAAGTTCTGGTAAATATAAGGAATTCTAGACTAGGAAATGGGATTAACTGTGGTTATGCATTTTACTAGGTAGTTGGAATGTCCTTAACTGTGTTCATGGGACATCTTAATCAATCAGCTGTGCCTAATTCCGAAACTGTTGAGCTCAGTTGTATTCGCTGGCTCGATTTAGGTCCACTTCTACGTCCATGTTTGATGTTCAGTGTCTAGCTGGTCCTTACGTGAACCCGATGAGGTACTTGCTATAAAGGGACCTGAAGACTGATTCATATTTCAAGTTCATTGGAGATGTGTTTAACAACTGTTCGATTTCTTCAGTTTTGTATTTTCACAAGTCCTCGGACATGTGCGACCATGCTGATTAATATAAACATTTAAAAATGATTTCAATAAGGTTACAATATGTATGTGATGAGTTGCACAAAATTAGAATGGGAAAATGATCGCACATTTTTTATGGGCATTCTGCTTAGATTGTAATTCCCACTTAATCAACTTAAATAATAGAATTATAATGATAGCCTGTTCATTCAGTGGAAGATCTAGGATTTGAAGATGGTGGGTGCTCATTTTCTTTAAGATAAAGTTGCTAACCTAGAAGGGTTACTTTCTGGAAGCTTTGTAATGTTTTTATAGTTTAGTTAGTTAATGAAAGACAAATACATAATTGGAAACAAGAAAGAAAAAATGAGCAAAAAAGAATCAGCAGCTAAAGTATACGTATGAAGTAGTTCTGTTTCCTTTTTTCCACCAAAAAAAGATTAATAGTTAGCACCTACTAGGATTCGAACCCTCAACAGAACCCATCAGTGCACTCTTATTTCAACTCTAGAACCAAAGCACCCATAAGAACTTTTGGTTTTTGTCTGCTCGCGAGTAGATTATATTAGTTTTACAGATTTTCTTTATATATACACAAAATTCTCATCGGGGGCAATGGGGGCTCGAGCACCGATAAACTACACGTGTAGTGGGTGTGTCCCTGTGTTCATTTGCTTTTGAAGATAGATTAACGGAATCTCTTTTCTTTCTTTCAAATTTGCACTTTATTTAAAGAGTATATTAAGGATAGGAAGAGACATTATTATCATTTTTAATTATAAAATATCTTTTTCCTAGTTTGCCACGTCCCAAAAAAAAATCTTTCCTTGCTTTATGTTACATTAATTGAATACATTTACCATCCTCTTTAGTCGTTAATATATAACCCATAGATACACTTGCACACACGTTCCACAATATATAATTTAACTCTCATTTAATTATGCAAAATGTTCATATTTAATGGAGTAGCCTTAATTGTGAAAATATAATGTGTTCACATTTTGTACAAGAACATTATTGCAATAGTTTTTAAGGGGTGAAATAATCTTTCAACTTTTAACTTTGGGGCTTCCACTTATGGAATAGTGTGGTGATTAATCCCATATATGCTTGTATTCTATGCATAGACCAACTGATAAAGTTATTAGCATATGTAGATATGTAGCACAACCTAAGTTGCTTTGACTCTTCGCTTTCGGTGCCAAAACCGTGTCGAGACGACATGGGCGTGGGTCTGGGCTGGGATAAGTACCTGATCTGGTCAACTAGGTTTGGGTACTTTGACCAAATTCGAGGGAAATTTTTTGGATAGATCCAATGATTTCTGTCCCTTTTCTTTTATCTCATTCCAAGATTCTCCTCTTGATCATTATTCACTCCTTGAGTTTTCCACATAATATCTCATTATTTTGGTTTTATAACTCTTATGTTTAGCCAAATCCCCGCACCCTGTATCCACACATGGATCCGTATCCCCGAACTTAAAAATTTAGGTCATAGAGGATCTGATCTCTAGATCTGCACCCTTATCGGATACCCGCACCCGAGCGACTTAGAGTGCAACTACTATTAATTGCTGGACAAACTTTCTCACTCTACATGTGTGATTTTGAACTGCATGTGTAGTTGTTAAATGTCTTTGCAGATAACGTTCAGTGGCAGAACTAGTATTTAGTTTATGCTTGTATGTTGATAACTGTGCGACTACAAGGGCATTTTACAACATAACACATGTTCTATTTGTATGAAATTATTTGCATTTGTCTTTATATGTACATGCAAATACTTAGCCATCACAATGTGTATGATGCCATTTCTGGAAACAAGGGACCAAATCTATAAAATTGGTCAAATGTTGGAAAGAGGAGGTTATCCCGGTATTTTTATCCGTGGAAAGCCCAGAAAAGTGACCGACTAGAGCAGGGCCCTATTGATAAATGTAAGGAAGTGTTTATGAGCCCTAGCAAAAGCCGTAGCCCTTTAATTGTGTCGGGGAATCGGCCTTCTTTAGTCAAAGGATCTAATTCCCATGTATTTCCAAGGTTATTGATGGTAGAGTTATTGCAACTTATGCCTTTGTTGAGCTCTTAGATGCGAGATTGTACATCTTGTCAGTCTTCTTCATTTTGTGCACTTTGCTGGTTTTTGGTTTGTGATGGCTTTTAATGATGTTTCACCATTGAATTCTAAAGTTTTATATGGGTCAAATAGGCAGGTTGGACTAAATTTGGGTGGGTTAAGCAGGTTGGATCAGTAAGCAAATTGGTCATAGCCAATTTATCATATCTAATCTCCCTTTCAATTTTAAGGATTTCATGAATGATGTCACTCAATTGCTCTGCTGATCTTCCTTCTGGATGCTCTTGAGAAGTAGTTGAAAATGTTGCATTAGATTGTAAATAGTCCAAAAGTAGTTCCACTTCTTGCTAGATTCCTTGGTCCTTGGGGTGAAATAGGACACACTTTTGCCTTTTGCTCCTTCTTGATGTATGTATCTCACACCTACATAGTACTGTAAACATCTATGTAGTATCTTTTCTGATGAAAAGAAATGGTACTACTTCTTGATCTTTCTCTTGTAAAGTAATAATTAGGTAATATTTCATGCTCTTTATTGGTACTTCTGTTTGATGTTCTATGTTATGTTGATCATACACTTCAATTGTCAACTCTTTCCTACATTCATTGCTGACATCCAGAGATGTTACAAATTTGATTTTGATTTCGTAGATACAAACATGGTATACCACTTTGAAATGTATTTTGATCATTAATGATTTCTCTGTTTTACAGGTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTAGGTTTCATCTCTTAAAACATAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCATCAATCGCGAATTTTGCGGATTGTTTTAGTCCTTGTGCAGTTGATCTG</genome_strand>
        <mrna_strand>TCGTTATCGAGGGGGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTAGGTTTCATCTCTTAAAACATAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCATCAATCGCGAATTTTGCGGATTGTTTTAGTCCTTGTGCAGTTGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319029" ref_strand="+" ref_description="SGN-U319029        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | TCP family transcription factor, putative, similar to PCF2 ((GI:2580440) Oryza sativa) | chr5:7842974-7844278 FORWARD | Aliases: MKD15.14, MKD15_14(evalue: 2e-35, score=145) genbank/nr: unknown(evalue: 2e-39, score=165)">
      <seq>actactatttttacatactatttgtttttgttttctactttgttaggctcattctcttgctttactttacaagagtggtgaatctttgattttgttaagtgttttgacatatttgttgtattggggctctgttttttttctcctatgaatagagctttttctattacttgaaacttcaactgaagctgctttctttgtttggggttttgtttaattgagctctgttttccagagcttggtgaatttgttgtttttttctttgttggggtttgctcaattcagctcataaatcccatattactactctatttggacttgattttctattatttgttgtttttttctttgttggggtttgctcaattcagctcacaattcccgtattagtactctattttggatttgattttcgattattgttgggttttgtttgttgataaatcctagtaattttccaccactaccgtttttgctgctagtgttttgagcttctaatgtcgacgtctgcagagggaaatggagctataattgatcctcagaggcaacaacaacaggcgcctactggggttggtacaaatggtgctttaacagtgaaaaaaccgccggtaaaagaccggcatagtaaggttgatggtagaggaagacgtataaggatgccaattgtatgtgcggcaagagtttttcagcttactcgtgaattgggtcataaatccgatggacaaactattgaatggctgcttcgtcaagctgagccttcaattatagctgctactggtactggtactattcctgctagtttctcgactgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="114835" stop="116260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115217" g_stop="115960" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="811" r_length="710" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-U319029" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115217" e_stop="115960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACATATTTGTTGTTTTGGGGCTCTGTTTTTTTTTTTTTTGCTTCCATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTAAAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTG-TTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATGCCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCTTCAATTATAGCTGCTACTGGTACTGGTACTATTCCTGCTAGTTTCTCGACTGTATC</genome_strand>
        <mrna_strand>TTTTGACATATTTGTTGTATTGGGGCTCTG------TTTTTTTT-CTCCTATGAATAGAGCTTTTTCTATTACTTGAAACTTCAACTGAA---GC-----TG-CTT-T----------------C-TTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTT-TTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTACTACTCTATTTGGACTTGATTTTCTATTATTTGTTGTTTTTTTCTTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATGCCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCTTCAATTATAGCTGCTACTGGTACTGGTACTATTCCTGCTAGTTTCTCGACTGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322624" ref_strand="+" ref_description="SGN-U322624        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | TCP family transcription factor, putative, similar to PCF1 (GI:2580438) and PCF2 ((GI:2580440) Oryza sativa) ; auxin-induced basic helix-loop-helix transcription factor, Gossypium hirsutum, EMBL:AF165924 | chr5:2680745-2681814 FORWARD | Aliases: F8L15.60, F8L15_60(evalue: 9e-07, score=48.5) genbank/nr: gi|50916108|ref|XP_468518.1| transcription factor PCF3-like [Oryza sativa (japonica cultivar-group)] >gi|48716463|dbj|BAD23070.1| transcription factor PCF3-like [Oryza sativa (japonica cultivar-group)] (evalue: 2e-06, score=53.9)">
      <seq>tactgctgtggtcccacagctggttttgggctgttccagctaggcntgatttggtcaaatttggagcttngcggcggcaccgccacctgaaatgatggtgccgacctccgcggctgcagcagctgcagccgcggcagcgttaagttcgcagagttctagattctttcagcagcagatgggtgaggcttcagctgctagagttgggaattacttaccaatgactcaagggcatctcaatttgctagcttctctatcaggtcctccacagccctcttccgggagaagagacgacgacggacgttgaagatatgattattgttattgttattgttatcgttattgttgttaatatatcgtataaatgtgttttaatgttcttgtttgtgttagatgagaaatttgttgctaggttctagtgagtgagaaatgaactaggggcttgttcaatttcatgaattattgctaggattaggtttgtttgctatatctcatttgtcaagagtttacgttcaccgagttttggtgttgtaagctgtgggacgataacacgaaacacaagcatcaggggaagttgttgcttgtgatgatgaatttggtggggtttgttctgttgtttgcagacctcacaataagctgctttgatcacattgtaacaagatataataggggatcagtgtggactatgaaaacctgtagttccacatgaatgttttgtaaggaaaccatggcggtttccgttgaattcaattctgtaatttgttgaaactatatcagttgtgagcttaaactttcctactcaaaagattgctatggacttcaatttattactgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="115838" stop="117272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116138" g_stop="116969" g_length="832"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="831" polyA_stop="849"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-U322624" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116138" e_stop="116969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGCTGTGGGTCCCACAGCTGGGTTTTGGGCTGTTCCAGCTAGGCCTGATTTTGGTCAAATTTGGAGCTTTGCGGCGGCACCGCCACCTGAAATGATGGTGCCAACCTCCGCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCAGTTGTGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTATTACT</genome_strand>
        <mrna_strand>TACTGCTGT-GGTCCCACAGCT-GGTTTTGGGCTGTTCCAGCTAGGCNTGA-TTTGGTCAAATTTGGAGCTTNGCGGCGGCACCGCCACCTGAAATGATGGTGCCGACCTCCGCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCAGTTGTGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338058" ref_strand="+" ref_description="SGN-U338058        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, predicted proteins, Arabidopsis thaliana | chr5:3758859-3760848 FORWARD | Aliases: T22P22.70, T22P22_70(evalue: 2e-68, score=173) genbank/nr: gi|15239148|ref|NP_196729.1| expressed protein [Arabidopsis thaliana] gi|11358224|pir||T48527 hypothetical protein T22P22.70 - Arabidopsis thaliana gi|7573382|emb|CAB87686.1| putative protein [Arabidopsis thaliana] gi|17065570|gb|AAL32939.1| putative protein [Arabidopsis thaliana] gi|17380652|gb|AAL36156.1| unknown protein [Arabidopsis thaliana] gi|20148563|gb|AAM10172.1| putative protein [Arabidopsis thaliana] gi|21436275|gb|AAM51276.1| unknown protein [Arabidopsis thaliana] gi|21593584|gb|AAM65551.1| unknown [Arabidopsis thaliana](evalue: 2e-66, score=173)">
      <seq>taagattttagaacgtagaaaaccacaattttcaaaagctaatcccaaattccaaaaattttccgatcggagatttttttttccgatcagaaacagaaaataaaaatggcagtgaatcctcaattatttcctaatggaatgccaattcctttcctcaatgaattgttcgtcctatctagacatggtgttgagtttgaggttgacaaaatccctggtgtaggaaaaacaagaacaagaggtacaatctacttgtcgaatattcggatggtctttgttgcaaagatgcctgtggatttcattgcttttgatatgcctttgctttttgtttctgatgaaatatttacgcaaccagtattccactgcaacaacatctctggatttgtagatccggttgttccagataatgaaaacagtgccttgtactccacacatacattcaagattttgttcaggatggtggttgtgggactttcgtgccattatttttcaacttaatcgcctctgtgagacgagctcagcaacagtctggggtacagccacgggcagaccctctccaagctgcacaaactccagttgatgagatgattagacatgcttatgtcgatcccaatgatccaacgaaaatcttcttgcagcagcctactccagagtcgcacttaggcgtcgntcataccaatcacaacctgcttaaactcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="120352" stop="123425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120652" g_stop="120867" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120868" i_stop="121435" i_length="568">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121436" g_stop="121538" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="318" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121539" i_stop="122281" i_length="743">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122282" g_stop="122353" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="390" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122354" i_stop="122700" i_length="347">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122701" g_stop="122906" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="595" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122907" i_stop="123019" i_length="113">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123020" g_stop="123125" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="699" r_length="104" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-U338058" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120652" e_stop="120867"/>
          <exon e_start="121436" e_stop="121538"/>
          <exon e_start="122282" e_stop="122353"/>
          <exon e_start="122701" e_stop="122906"/>
          <exon e_start="123020" e_stop="123125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATTTTAGAACGTAGAAAAACAACAATTTTCAAAAGCTAATCCCAAATTCCAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGGGTGAGTTCATCTTATTTAGCGAATTCAGAATTTTCATTTAGGGATTCGTAAAAAAAAATGCTTAATTTTTGAACTTGAAACCTCGATATGAAATTTGAGCCCCTCAATATTCAAAATTTATTGTAATATGTAAGAATTATCTTATCTATATGGTGTAATTTGTGAATCCTCTCTATTCGTGTATATGAAGAAAAAAAAAACTCTGAAAGTATTTATGTATAATTTTATGCAAATATTATGAGAAGTGGAGGTGACAGCAGGGGCGGAGCTAATTAGGTTCCTTTTGATAGAAAATTATACTGTTTATATATGGTTAAAATTATTTTTTGTGCCCATATCTCTATGTATATATATATATTAGATGTTGAACCCCTCAATGAAAATATTGGCTTCGATGAGGTTAGTTGGAGGATGAGGACGATAAAATCGATGTGAAGTGTCAAATATGGTTAAATGTATTTGCTTTACTTTTTTGAGTTCCTTGTTTTTCAAACACATGATTCTTGCATTGCCTTCATTGTTTTTTATTAGTTCATGAAGCTGTGTTAATGAGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGACTTTGCTGAGCAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTCATTCTGCAGCTTTTTGTTTCTGATGAAATATTTACGCAACCAGTATTCCACTGCAACAACATCTCTGGATTTGTAGATCCGGTAAGCTGAATTACTATTTTCGAATATACTCAATGTTGTCTAAGGTGCACTTTAAGCGCACTTAAGGGTGAAGCGAGGTGCAAAGTATGTTGAGCTTAGCTGGCGCGTTAGTGCCGTCATCAAGGCTCTAGCACCTTGTCAATGACTCTAAATGCTAAATTCTCTCCTTATATTTGTTATTATAATCATTAGTCTAGGACTACACATACATATTTGTGATTTTCTCCACCACATTTTATCTATGCTTATAGCCCCAACGAACCTTAGAGACTTTTTGCTCTTTTTGCTTTCGAAAACACTGGATTATGTGCGTGCAACATTAGATAACCGATTATGGCTATGTTCAGGTTGTTCCAGATAATGAAAACAGTGCCTTGTACTCCACACATACATTCAAGATTTTGTTCAAGGATGGTGGTTGTGGGACTTTCGTGCCATTATTTTTCAACTTAATCGCCTCTGTGAGACGAGCTCAGCAACAGTCTGGGGTACAGCCACGGGCAGACCCTCTCCAAGCTGCACAAACTCCAGTTGATGAGATGATTAGACATGCGTATGTCAACGTTGCTTTCTCCTTTTTACAACGACATTAGTTAACGATCCTTTCCCCCCCTCAATATGCTAACTGGTTTTACTGAATTCTTATGGTGTTTGTTGATTTTGCAGTTATGTCGATCCCAATGATCCAACGAAAATCTTCTTGCAGCAGCCTACTCCAGAGTCGCAACTTAGGCGTCGTTCATACCAATCACAACCTGCTTAAAACTCAATA</genome_strand>
        <mrna_strand>TAAGATTTTAGAACGTAG-AAAACCACAATTTTCAAAAGCTAATCCCAAATTCCAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTGTTTCTGATGAAATATTTACGCAACCAGTATTCCACTGCAACAACATCTCTGGATTTGTAGATCCG...........................................................................................................................................................................................................................................................................................................................................................GTTGTTCCAGATAATGAAAACAGTGCCTTGTACTCCACACATACATTCAAGATTTTGTTC-AGGATGGTGGTTGTGGGACTTTCGTGCCATTATTTTTCAACTTAATCGCCTCTGTGAGACGAGCTCAGCAACAGTCTGGGGTACAGCCACGGGCAGACCCTCTCCAAGCTGCACAAACTCCAGTTGATGAGATGATTAGACATGC.................................................................................................................TTATGTCGATCCCAATGATCCAACGAAAATCTTCTTGCAGCAGCCTACTCCAGAGTCGC-ACTTAGGCGTCGNTCATACCAATCACAACCTGCTT-AAACTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324667" ref_strand="+" ref_description="SGN-U324667        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, predicted proteins, Arabidopsis thaliana | chr5:3758859-3760848 FORWARD | Aliases: T22P22.70, T22P22_70(evalue: 2e-23, score=106) genbank/nr: gi|15239148|ref|NP_196729.1| expressed protein [Arabidopsis thaliana] gi|11358224|pir||T48527 hypothetical protein T22P22.70 - Arabidopsis thaliana gi|7573382|emb|CAB87686.1| putative protein [Arabidopsis thaliana] gi|17065570|gb|AAL32939.1| putative protein [Arabidopsis thaliana] gi|17380652|gb|AAL36156.1| unknown protein [Arabidopsis thaliana] gi|20148563|gb|AAM10172.1| putative protein [Arabidopsis thaliana] gi|21436275|gb|AAM51276.1| unknown protein [Arabidopsis thaliana] gi|21593584|gb|AAM65551.1| unknown [Arabidopsis thaliana](evalue: 1e-21, score=106)">
      <seq>caaaaattttccgatcggagattttctattccgatcagaaaacagaaaataaaaatggcagtgaatcctcaattatttcctaatggaatgccaattcctttcctcaatgaattgttcgtcctatctagacatggtgttgagtttgtggtcgacaaaatccctggtgtaggaaaaacaagaacaagaggtacaatctacttgtcgaatattcggatggtctttgttgcaaagatgcctgtggatttcattgcttttgatatgcctttggtatgttatacttctatgtctttttaccgtcctccgattttgcaaacaccacatgctaaccaactctattcactcatgactggtatagtttttctgtggatcagagaagaaaatcgcgaaaactctcttttgttactcttactattatattaacaagttactatggcgctccttcagtatctgctgtaactagaccaacatatgcataatgtgcaattcagaatggcgattccaagtataacgattagcgatatttcttttgttgcttctttttgaggctgaacaaaactttgtgtatgatatgcttctgaatcctgtagttttgttctctctttgaaatacattttagaaagtcgtattttactatgtgcaattcagaatggcgcgtagtagagcagatatatcactttggtcaaatacgatccttctcctatgaaactgtactgtttgtttctaaagctttgacatgttaattgaatggtattatgacatgatttatatctgatttgtatattaagcacaacattgctagatacaacatctgctaggaagcatgttatggcatatattgttcggatatttgttaagatgcatgacatgaattcgtgttcatctgttctatgtttttgttcagagaaataatctggtaagttggtgacttttgctgaacaagaagttacaaaactgagaaatgtaagctacatttgctttgacaaagtttatttacctttttttcttctgcagctttttgtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="120405" stop="122593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120705" g_stop="120867" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120868" i_stop="121435" i_length="568">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121436" g_stop="122293" g_length="858"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="1023" r_length="859" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-U324667" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1021</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120705" e_stop="120867"/>
          <exon e_start="121436" e_stop="122293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAA-ACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGGGTGAGTTCATCTTATTTAGCGAATTCAGAATTTTCATTTAGGGATTCGTAAAAAAAAATGCTTAATTTTTGAACTTGAAACCTCGATATGAAATTTGAGCCCCTCAATATTCAAAATTTATTGTAATATGTAAGAATTATCTTATCTATATGGTGTAATTTGTGAATCCTCTCTATTCGTGTATATGAAGAAAAAAAAAACTCTGAAAGTATTTATGTATAATTTTATGCAAATATTATGAGAAGTGGAGGTGACAGCAGGGGCGGAGCTAATTAGGTTCCTTTTGATAGAAAATTATACTGTTTATATATGGTTAAAATTATTTTTTGTGCCCATATCTCTATGTATATATATATATTAGATGTTGAACCCCTCAATGAAAATATTGGCTTCGATGAGGTTAGTTGGAGGATGAGGACGATAAAATCGATGTGAAGTGTCAAATATGGTTAAATGTATTTGCTTTACTTTTTTGAGTTCCTTGTTTTTCAAACACATGATTCTTGCATTGCCTTCATTGTTTTTTATTAGTTCATGAAGCTGTGTTAATGAGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGAC-TTTGCTGAGCAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTCATTCTGCAGCTTTTTGTTTCT</genome_strand>
        <mrna_strand>CAAAAATTTTCCGATCGGAGATTTTCTATTCCGATCAGAAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGTGGTCGACAAAATCCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGACTTTTGCTGAACAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTTCTTCTGCAGCTTTTTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315915" ref_strand="+" ref_description="SGN-U315915        Tomato 200607 #1 [34 ESTs aligned] arabidopsis/peptide: | Symbol: None | glutamate-1-semialdehyde 2,1-aminomutase 1 (GSA 1) / glutamate-1-semialdehyde aminotransferase 1 (GSA-AT 1), identical to GSA 1 (SP:P42799) | chr5:25469103-25471067 FORWARD | Aliases: MBK5.3, MBK5_3(evalue: 0, score=734) genbank/nr: gi|2492862|sp|Q40147|GSA_LYCES Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) gi|7489005|pir||T07034 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) - tomato gi|642911|gb|AAA81881.1| glutamate 1-semialdehyde 2,1-aminomutase(evalue: 0, score=899)">
      <seq>gacaacaaaaaaattagaagaaaacccattgcagcactaattcaagaatactcagagagagaagaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaatttgagggttgttaccatggtcatgctgatccatttcttgttaaagcgggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaatttggcagattctatagagggatgctggaggaaggtgtttactttgcaccatcacagtttgaggctggatttactagcttagcacacactccagaggatattcaaaggactgtagctgcagctgaaaaagttttgaagcaaatttaaccactatatttctttttgtatgctagatggagagattttcctttttaagtttttgttctgttgaataaaaggtgattttgtaacatattgtttattcagaaacatgctgcattattttacctcctgtatttaaagcattttttggtcacttgagtacatctgtactatatattaacaagaggagtcttggagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127588" stop="123128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127289" g_stop="127002" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="462" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="123428" g_length="1262"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="1724" r_length="1262" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-U315915" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127289" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="123428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAAAAAAAATTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGAGTACATCTGTACTATATATTAACAAGAGGAGTCTTGGAGTG</genome_strand>
        <mrna_strand>GACAACAAAAAAATTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTTGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCGGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGAGTACATCTGTACTATATATTAACAAGAGGAGTCTTGGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343831" ref_strand="+" ref_description="SGN-U343831        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G08310.1 | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr5:2670135-2675255 REVERSE | Aliases: F8L15.40, F8L15_40 (evalue: 2e-64, score=242) genbank/nr: gi|15241593|ref|NP_196448.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana](evalue: 2e-62, score=242)">
      <seq>aaagcttctaactttcttgctgacatggttcatgaaggatttctccctgatgtagttggttattcggcagtcatagacggccttgttaagattaaacagttggatgatgcactgaatcttttcagagggatctgtgctcggggttattgccctgatgtggttgcttataacattatgataaatgggctttgtaaggccaaaagggtacttgacgcccagaatcttcttgatgaaatgatggctaagggacttattccatcagttgttacctacaactcactgattgatgggtggtgcaaaaatggtgatgtagatcgagcaattgcatatctcactaggatgaatgtaaaagaacgggagcccaatgttatcacttacaccactttaatagatgggttatgcaatgccggcaaaccaagtgatgctattagtcttttggtcaatatggaggcaaatgggtgctctccaaatagaataacttttatggctctcattagtggtctgtgcaagtgtcggaagccagatgatgctctgatttatctgcaggaaatggagaggaaggatatgaaacccgatccatcgatctacatagtgctaatagatgcctttataaaaaatatgaatcctaatgaagcttgtgagctactacaaaaggtggtccatgacgagtctcttctagatttaaatattaagagtcgacctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="134881" stop="133576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134581" g_stop="133876" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-U343831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134581" e_stop="133876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTCTAACTTTCTTGCTGACATGGTTCATGAAGGATTTCTCCCTGATGTAGTTGGTTATTCGGCAGTCATAGACGGCCTTGTTAAGATTAAACAGTTGGATGATGCACTGAATCTTTTCAGAGGGATCTGTGCTCGGGGTTATTGCCCTGATGTGGTTGCTTATAACATTATGATAAATGGGCTTTGTAAGGCCAAAAGGGTACTTGACGCCCAGAATCTTCTTGATGAAATGATGGCTAAGGGACTTATTCCATCAGTTGTTACCTACAACTCACTGATTGATGGGTGGTGCAAAAATGGTGATGTAGATCGAGCAATTGCATATCTCACTAGGATGAATGTAAAAGAACGGGAGCCCAATGTTATCACTTACACCACTTTAATAGATGGGTTATGCAATGCCGGCAAACCAAGTGATGCTATTAGTCTTTTGGTCAATATGGAGGCAAATGGGTGCTCTCCAAATAGAATAACTTTTATGGCTCTCATTAGTGGTCTGTGCAAGTGTCGGAAGCCAGATGATGCTCTGATTTATCTGCAGGAAATGGAGAGGAAGGATATGAAACCCGATCCATCGATCTACATAGTGCTAATAGATGCCTTTATAAAAAATATGAATCCTAATGAAGCTTGTGAGCTACTACAAAAGGTGGTCCATGACGAGTCTCTTCTAGATTTAAATATTAAGAGTCGACCTATTC</genome_strand>
        <mrna_strand>AAAGCTTCTAACTTTCTTGCTGACATGGTTCATGAAGGATTTCTCCCTGATGTAGTTGGTTATTCGGCAGTCATAGACGGCCTTGTTAAGATTAAACAGTTGGATGATGCACTGAATCTTTTCAGAGGGATCTGTGCTCGGGGTTATTGCCCTGATGTGGTTGCTTATAACATTATGATAAATGGGCTTTGTAAGGCCAAAAGGGTACTTGACGCCCAGAATCTTCTTGATGAAATGATGGCTAAGGGACTTATTCCATCAGTTGTTACCTACAACTCACTGATTGATGGGTGGTGCAAAAATGGTGATGTAGATCGAGCAATTGCATATCTCACTAGGATGAATGTAAAAGAACGGGAGCCCAATGTTATCACTTACACCACTTTAATAGATGGGTTATGCAATGCCGGCAAACCAAGTGATGCTATTAGTCTTTTGGTCAATATGGAGGCAAATGGGTGCTCTCCAAATAGAATAACTTTTATGGCTCTCATTAGTGGTCTGTGCAAGTGTCGGAAGCCAGATGATGCTCTGATTTATCTGCAGGAAATGGAGAGGAAGGATATGAAACCCGATCCATCGATCTACATAGTGCTAATAGATGCCTTTATAAAAAATATGAATCCTAATGAAGCTTGTGAGCTACTACAAAAGGTGGTCCATGACGAGTCTCTTCTAGATTTAAATATTAAGAGTCGACCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325162" ref_strand="+" ref_description="SGN-U325162        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | yellow-leaf-specific protein 8 (YLS8) / mitosis protein DIM1, putative, contains Pfam domain PF02966: Mitosis protein DIM1; identical to cDNA YLS8 mRNA for Dim1 homolog GI:13122293 | chr5:2665977-2667156 FORWARD | Aliases: F8L15.20, F8L15_20(evalue: 2e-78, score=288) genbank/nr: Thioredoxin(evalue: 7e-77, score=289)">
      <seq>gctgtaagcttcttctctgtttcttttttcttcattttttctgcataaaaagatcgaaatcagctactatttgagagagagatgtcgtatttgttaccacatcttcactctggatgggctgtggatcaagctatccttgcggaagaagaacgccttgtacttattcgatttggccatgattgggatgatacttgtatgcagatggatgaggtgttgtcttcagttgcggagacgatcaagaactttgctgtgatttacctggttgacatcaccgaggttcctgattttaacacgatgtacgagctgtatgatccatccaccatcatgttcttcttcaggaacaagcacattatgattgatcttggcaccgggaacaataacaagatcaactgggcgcttaaggataaacaggagttcatcgacattgttgagactgtgtatcgcggtgccagaaaaggccggggtctagtcatagcaccaaaagattactctaccaagtacagatactaagttacttggttgctggaacatgttgtactttatgatgaagctggaagaagttatagaacaatttataaattgaaatgtaaaagtttggtcaagtataattatgatgagcttcttggataaatcttgattgagaaaaaataaaaatgtaaagctgattcttaatgttcttagattaaaatcatgatttgaagttaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="140066" stop="136509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139767" g_stop="139567" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139566" i_stop="137318" i_length="2249">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137317" g_stop="136809" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="710" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-U325162" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139767" e_stop="139567"/>
          <exon e_start="137317" e_stop="136809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTAAGCTTCTTCTCTGTTTCTTTTTTCTTCATTTTTTCTGCATAAAAAGATCGAAATCAGCTACTATTTGAGAGAGAGATGTCGTATTTGTTACCACATCTTCACTCTGGATGGGCTGTGGATCAAGCTATCCTTGCGGAAGAAGAACGCCTTGTACTTATTCGATTTGGCCATGATTGGGATGATACTTGTATGCAGGTAACCTATTTTAAACATATAACTGTGAATTTCTTTAAATTTTTGTATGAAATTTGTTGGGTTTTTAGTAAAAGTTGAAATTCTTATAAGAAATTTGTTGGGTTTTTAGTAAAAGAAGAATCTTGGAATAGATATAGAGGATTGATATAATAGGCCTCAACTAGTTATGGTATGAGCATTTTTCAACATGGAATTGTCAATTTTTTATATGAATTTTGTTGGGTTGTTAGCGAAAAGAAGAATGTTGGAACTTTCATGTAGTAGACTCAACTAACAATTGTCAATTTCTGGATTTTTTTTGTTTTATGGATTGTTAACTAAAAAGAAGAATCTTGGAATAGATATAGGGGAGTCATGTAGTAGACTTGAACTAGTTTTGAATTAGATATAAGCTATTGAACTTTACTTGTGTTGTATTTTTTTCTCTTAAAAGAAGAATTGTTGGATGACTTGATAAAAGAGGGAACTTTAATGGCTAGAATGGAGCAGGCTAGAACACAACTGGTTTGGGATTTGCTTGATTATTTGGAAGGATAACTCTGTTTGAATCGCTAAGTCTTATTAATTTGTTGTTCCTGTTGGTTTAACTGATTATGGCAGAAAAAGGTTATTGATTTAGTGTTTTTATTGGGTTGAATCACCTGATTGTGTTATTGTTGATGCAAATAGAGTGTTGGGATAGTAGTTTCTATTTATCTATTTGTGCTGAATATAACTGCGTTGAGCTTCGGAAGGCATGGTCAGTCCAAAGTCAAGATAAAGGGCGAGTGGTGCAGTAGATTGGATGTTACCGTAATTGTGATGAATCCTTTTAATATGTGGATATAGAGGACCCATACAACCGATCCCCAGCTAGTTTGGAGTTGAGTTGTAGTTTATTGCTTTCAATATTAAGTTCTGTAAAATTAAGTTGCAATCTTTTGATGTGGAGTTGAAAGTGTTACTGTATTCACAAAGGTGGATCCAGAACTTGATGTTTATGGATTCTAGATTCACGCTTTTTGAACGTACTGAGTTCTATATTAGTATTTGTACGTATTAAATAGATTTATGAATTCAACCATACCTAAAACGTACATCCGCCGCAAATTGGTGTGTTAGTTTTGTTTTGGGTTCCTTCTGTGTTTATTTATTCCAGTGATTCAAAAAAAAAATGCCTGTGGAAAAGAGAAGGAATTTTGCTGTTTGAGGATTGTTGATTCTTTGTTATAGCTACCCTTCACTTTTCAAAAAGAAAAAAGAAAGGTAGCTTGGAAACACTTGTAATTTAACAGAAGGCAATGAGTTTGGAATTTAAGTCCTGCAGAGTGCACTTTGAGGCAGGTATTACATATGTTTTCCTTCTCCGAAATCAGATGTCTCATGAGATATTGTGTAATGGAAACTGAATCGATTTGGTGGGTGAACCGGTCCTTTTAGTTTGGAACTGTTTTACTGCCAATTTATTAACTTGAAGTAAAAGTTCTTTGGAAGCTAATCTATATGGTCTTATTTGGTGAATTGGGGTGATAATGTTTACTGATTAAGTTTAGGTATTGGATTATGGAACGACATAGTCGAGGATAGTAAAAGTGTTAGAAGCTGCTATTGAGGTTGAAGATCATGGACTAGGATGATCCAAATCTTGTTATTTTCTCAGAATAACAACAATGACAACAGGACTAGAATTAAGAAAAGAAGTGATGGTGAAAACAATTGAGAAAAGAACAAGCAGAGACAACAAAAATGTGGAATCAAACATAACGAGGCTGTGTATGATCTCATACAGGACTACAATTAGTAACATAAGATCTCACTCGTCCACCTATAAATGGTAATATGCTAATATTTGTTTACATGTTTTATTTTTACCATGTATCCTCTATTACATCTTCCAACAATGTTTGCCCATCGTACTTCATCCTAAAAACAAATAAAAGCAGCAATTTAGTGAGCCATATATCTCAGTACTATAATTTCGGGATCGTCCTGCCATTGATAGAAATCTGAAACCATTGCTTTGAACTGATTTCACATTATTAGTGCTTTTTTAAAGAAAGAGTGAGTGGTTGATAGCCCTTCATTTTTCTTGAAATGTATTTCATCTCATGGATCTGAGTGTGTCTTGTTAATTTTGCATATCAAATGATGCACAATTTATCTATGTTCAAGTTATGGCACATCTCTACACTTCTTTGCCGTGTCTTAGGCGTCTTAACTGTGTCTTGTAAATCCGTAGTTTTGATTGCATATTTTTTCTTGGACTCCAGATGGATGAGGTGTTGTCTTCAGTTGCGGAGACGATCAAGAACTTTGCTGTGATTTACCTGGTTGACATCACCGAGGTTCCTGATTTTAACACGATGTACGAGCTGTATGATCCATCCACCATCATGTTCTTCTTCAGGAACAAGCACATTATGATTGATCTTGGCACCGGGAACAATAACAAGATCAACTGGGCGCTTAAGGATAAACAGGAGTTCATCGACATTGTTGAGACTGTGTATCGCGGTGCCAGAAAAGGCCGGGGTCTAGTCATAGCACCAAAAGATTACTCTACCAAGTACAGATACTAAGTTACTTGGTTGCTGGAACATGTTGTACTTTATGATGAAGCTGGAAGAAGTTATAGAACAATTTATAAATTGAAATGTAAAAGTTTGGTCAAGTATAATTATGATGAGCTTCTTGGATAAATCTTGATTGAGAAAAAATAAAAATGTAAAGCTGATTCTTAATGTTCTTAGATTAAAATCATGATTTGAAGTTAAAATTT</genome_strand>
        <mrna_strand>GCTGTAAGCTTCTTCTCTGTTTCTTTTTTCTTCATTTTTTCTGCATAAAAAGATCGAAATCAGCTACTATTTGAGAGAGAGATGTCGTATTTGTTACCACATCTTCACTCTGGATGGGCTGTGGATCAAGCTATCCTTGCGGAAGAAGAACGCCTTGTACTTATTCGATTTGGCCATGATTGGGATGATACTTGTATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATGAGGTGTTGTCTTCAGTTGCGGAGACGATCAAGAACTTTGCTGTGATTTACCTGGTTGACATCACCGAGGTTCCTGATTTTAACACGATGTACGAGCTGTATGATCCATCCACCATCATGTTCTTCTTCAGGAACAAGCACATTATGATTGATCTTGGCACCGGGAACAATAACAAGATCAACTGGGCGCTTAAGGATAAACAGGAGTTCATCGACATTGTTGAGACTGTGTATCGCGGTGCCAGAAAAGGCCGGGGTCTAGTCATAGCACCAAAAGATTACTCTACCAAGTACAGATACTAAGTTACTTGGTTGCTGGAACATGTTGTACTTTATGATGAAGCTGGAAGAAGTTATAGAACAATTTATAAATTGAAATGTAAAAGTTTGGTCAAGTATAATTATGATGAGCTTCTTGGATAAATCTTGATTGAGAAAAAATAAAAATGTAAAGCTGATTCTTAATGTTCTTAGATTAAAATCATGATTTGAAGTTAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>25</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6477" PGL_stop="1306"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6477" e_stop="6201"/>
            <exon e_start="4342" e_stop="4290"/>
            <exon e_start="3202" e_stop="3067"/>
            <exon e_start="2188" e_stop="2013"/>
            <exon e_start="1925" e_stop="1306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.893" acc_prob="0.609" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6477" e_stop="6201" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.893" acc_prob="0.609">
            <gDNA_intron_boundary i_start="6200" i_stop="4343" i_length="1858"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4342" e_stop="4290" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.790">
            <gDNA_intron_boundary i_start="4289" i_stop="3203" i_length="1087"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3202" e_stop="3067" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.846">
            <gDNA_intron_boundary i_start="3066" i_stop="2189" i_length="878"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2188" e_stop="2013" e_length="176"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.950">
            <gDNA_intron_boundary i_start="2012" i_stop="1926" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1925" e_stop="1306" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6477" stop="6201"/>
              <exon start="4342" stop="4290"/>
              <exon start="3202" stop="3067"/>
              <exon start="2188" stop="2013"/>
              <exon start="1925" stop="1306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGCCGAATCCATCTCAATTTTCTTTTCTTCTGATGAAAATTAAGAATGTTGAGTGGGTCTCGGTGTAATTTTCATTGCAGTGCTCACCAATTTGCCACCATTTTAGCTGCTTCTACACTGACCTCAGAATCTTCTTTCAAAAATTTTAGAATCAGATTGAGGAGCAGGAACAGTAATAGTTCTTGTTTGAGCAATAAAGTTTGTGATTTTGGGGTCAATTGTGTTCAACCCAAATCTTCAGATACCCAAAGCTCTTTGCTTTCTGAAACTTTGAG : CCAATCTGGAACAGATGAGGAGCCTCCATCAGAAAGATTGCCAATTCTTACAG : GCGGGATAGTAGCTCTGGGGAAATTTGATGCACTCCATATTGGTCACCGCGAGCTTGCAATTCAAGCAGCAAAGAGAGGAATTCCATTTCTTCTTTCATTTGTTGGGATGGCGGAAGTACTTGGATGGGAACCAAG : GGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCGGTAGTATAATGCCAAGGGAACTCCAGATAGATTTTTCGAAAGTTCGATATCTTACGCCTTGTCAGTTTGTGGAGAAGCTTTCCAAAGAGCTGGGAGTACGAGGAGTTGTTGCTG : GCGAGAATTATCGTTTTGGATATAGAGCTGCTGGTGATGCATCAGACCTTGTGAAGCTCTGTGAGGAGTATGGATTAGAGGCTTATATAATCAATTCTGTCATGGACACAAATCAAATTTCTGGAGACTTGAACTCTAAAGACGGTAAAGAGAGAGGGCAAGTATCATCTACTCGTGTTAGGTATGCCCTTCACAAGGGAGACATGAAATATGTGTCAGAGCTATTAGGTCGGAACCATCGTCTTATTTTAATGATGGAAGACCAAGAAAGGTTTACTAGTGAGAGAAATAGGCTGTCTGCTCCAAAGTCTTGTTTGTTGAATCTTGCACCTAAGGAAGGTCTTTATGAGAATTGTTCAGTTTTGATTGACAAGAGTGTTATTCCCTGCAGAGTAATAGTTGATACAACATATATTCATTTGGAATCCTATGAGGTAGCTAGTTTTTCCTGTGTTACTTCTCAAGACTTAAAGATATTGGGTATTGACTTTGGCAGTCCAAAGTTAGAAGGGGTTCAAATTTTGTAATTCATTCCCGATAATTTGTTAGTGCAACCATTTCTGAATGTCCTTCAGTGTTTAAGTATGAGTATGATTTTTTAAGCGGTACCTTTCTGCTAA</gDNA_template>
            <first_frame> *  A  E  S  I  S  I  F  F  S  S  D  E  N  *  E  C  *  V  G  L  G  V  I  F  I  A  V  L  T  N  L  P  P  F  *  L  L  L  H  *  P  Q  N  L  L  S  K  I  L  E  S  D  *  G  A  G  T  V  I  V  L  V  *  A  I  K  F  V  I  L  G  S  I  V  F  N  P  N  L  Q  I  P  K  A  L  C  F  L  K  L  *   : A  N  L  E  Q  M  R  S  L  H  Q  K  D  C  Q  F  L  Q  :  A  G  *  *  L  W  G  N  L  M  H  S  I  L  V  T  A  S  L  Q  F  K  Q  Q  R  E  E  F  H  F  F  F  H  L  L  G  W  R  K  Y  L  D  G  N  Q   : G  L  P  L  L  L  N  V  I  A  K  G  F  F  R  L  G  L  L  I  A  V  V  *  C  Q  G  N  S  R  *  I  F  R  K  F  D  I  L  R  L  V  S  L  W  R  S  F  P  K  S  W  E  Y  E  E  L  L  L  :  A  R  I  I  V  L  D  I  E  L  L  V  M  H  Q  T  L  *  S  S  V  R  S  M  D  *  R  L  I  *  S  I  L  S  W  T  Q  I  K  F  L  E  T  *  T  L  K  T  V  K  R  E  G  K  Y  H  L  L  V  L  G  M  P  F  T  R  E  T  *  N  M  C  Q  S  Y  *  V  G  T  I  V  L  F  *  *  W  K  T  K  K  G  L  L  V  R  E  I  G  C  L  L  Q  S  L  V  C  *  I  L  H  L  R  K  V  F  M  R  I  V  Q  F  *  L  T  R  V  L  F  P  A  E  *  *  L  I  Q  H  I  F  I  W  N  P  M  R  *  L  V  F  P  V  L  L  L  K  T  *  R  Y  W  V  L  T  L  A  V  Q  S  *  K  G  F  K  F  C  N  S  F  P  I  I  C  *  C  N  H  F  *  M  S  F  S  V  *  V  *  V  *  F  F  K  R  Y  L  S  A   </first_frame>
            <second_frame>  R  P  N  P  S  Q  F  S  F  L  L  M  K  I  K  N  V  E  W  V  S  V  *  F  S  L  Q  C  S  P  I  C  H  H  F  S  C  F  Y  T  D  L  R  I  F  F  Q  K  F  *  N  Q  I  E  E  Q  E  Q  *  *  F  L  F  E  Q  *  S  L  *  F  W  G  Q  L  C  S  T  Q  I  F  R  Y  P  K  L  F  A  F  *  N  F  E  :  P  I  W  N  R  *  G  A  S  I  R  K  I  A  N  S  Y  R :   R  D  S  S  S  G  E  I  *  C  T  P  Y  W  S  P  R  A  C  N  S  S  S  K  E  R  N  S  I  S  S  F  I  C  W  D  G  G  S  T  W  M  G  T  K  :  G  S  H  C  C  *  M  *  S  Q  K  D  S  F  V  L  G  S  L  L  R  *  Y  N  A  K  G  T  P  D  R  F  F  E  S  S  I  S  Y  A  L  S  V  C  G  E  A  F  Q  R  A  G  S  T  R  S  C  C  W :   R  E  L  S  F  W  I  *  S  C  W  *  C  I  R  P  C  E  A  L  *  G  V  W  I  R  G  L  Y  N  Q  F  C  H  G  H  K  S  N  F  W  R  L  E  L  *  R  R  *  R  E  R  A  S  I  I  Y  S  C  *  V  C  P  S  Q  G  R  H  E  I  C  V  R  A  I  R  S  E  P  S  S  Y  F  N  D  G  R  P  R  K  V  Y  *  *  E  K  *  A  V  C  S  K  V  L  F  V  E  S  C  T  *  G  R  S  L  *  E  L  F  S  F  D  *  Q  E  C  Y  S  L  Q  S  N  S  *  Y  N  I  Y  S  F  G  I  L  *  G  S  *  F  F  L  C  Y  F  S  R  L  K  D  I  G  Y  *  L  W  Q  S  K  V  R  R  G  S  N  F  V  I  H  S  R  *  F  V  S  A  T  I  S  E  C  P  S  V  F  K  Y  E  Y  D  F  L  S  G  T  F  L  L  </second_frame>
            <third_frame>   G  R  I  H  L  N  F  L  F  F  *  *  K  L  R  M  L  S  G  S  R  C  N  F  H  C  S  A  H  Q  F  A  T  I  L  A  A  S  T  L  T  S  E  S  S  F  K  N  F  R  I  R  L  R  S  R  N  S  N  S  S  C  L  S  N  K  V  C  D  F  G  V  N  C  V  Q  P  K  S  S  D  T  Q  S  S  L  L  S  E  T  L  S :   Q  S  G  T  D  E  E  P  P  S  E  R  L  P  I  L  T   : G  G  I  V  A  L  G  K  F  D  A  L  H  I  G  H  R  E  L  A  I  Q  A  A  K  R  G  I  P  F  L  L  S  F  V  G  M  A  E  V  L  G  W  E  P  R :   A  P  I  V  A  E  C  D  R  K  R  I  L  S  S  W  A  P  Y  C  G  S  I  M  P  R  E  L  Q  I  D  F  S  K  V  R  Y  L  T  P  C  Q  F  V  E  K  L  S  K  E  L  G  V  R  G  V  V  A   : G  E  N  Y  R  F  G  Y  R  A  A  G  D  A  S  D  L  V  K  L  C  E  E  Y  G  L  E  A  Y  I  I  N  S  V  M  D  T  N  Q  I  S  G  D  L  N  S  K  D  G  K  E  R  G  Q  V  S  S  T  R  V  R  Y  A  L  H  K  G  D  M  K  Y  V  S  E  L  L  G  R  N  H  R  L  I  L  M  M  E  D  Q  E  R  F  T  S  E  R  N  R  L  S  A  P  K  S  C  L  L  N  L  A  P  K  E  G  L  Y  E  N  C  S  V  L  I  D  K  S  V  I  P  C  R  V  I  V  D  T  T  Y  I  H  L  E  S  Y  E  V  A  S  F  S  C  V  T  S  Q  D  L  K  I  L  G  I  D  F  G  S  P  K  L  E  G  V  Q  I  L  *  F  I  P  D  N  L  L  V  Q  P  F  L  N  V  L  Q  C  L  S  M  S  M  I  F  *  A  V  P  F  C  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6439" stop="6201"/>
                    <exon start="4342" stop="4290"/>
                    <exon start="3202" stop="3067"/>
                    <exon start="2188" stop="2013"/>
                    <exon start="1925" stop="1399"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1128</number_coding_nucleotides>
                  <number_encoded_amino_acids>376</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLRMLSGSRCNFHCSAHQFATILAASTLTSESSFKNFRIRLRSRNSNSSCLSNKVCDFGVNCVQPKSSDTQSSLLSETLSQSGTDEEPPSERLPILTGGIVALGKFDALHIGHRELAIQAAKRGIPFLLSFVGMAEVLGWEPRAPIVAECDRKRILSSWAPYCGSIMPRELQIDFSKVRYLTPCQFVEKLSKELGVRGVVAGENYRFGYRAAGDASDLVKLCEEYGLEAYIINSVMDTNQISGDLNSKDGKERGQVSSTRVRYALHKGDMKYVSELLGRNHRLILMMEDQERFTSERNRLSAPKSCLLNLAPKEGLYENCSVLIDKSVIPCRVIVDTTYIHLESYEVASFSCVTSQDLKILGIDFGSPKLEGVQIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12434" PGL_stop="10207"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12434" e_stop="12392"/>
            <exon e_start="11350" e_stop="10207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.778" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12434" e_stop="12392" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.778" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12391" i_stop="11351" i_length="1041"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11350" e_stop="10207" e_length="1144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12434" stop="12392"/>
              <exon start="11350" stop="10207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAATTAAAATAATTACCTCGCCTTCATCAGATCTGGTTGTT : GGAAATGTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAGGTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATTCACAGTTGTTGTGTGGAAATTCTTCTCGGGAAGGATACCTTACGAGGAGTTTTTCCTCAAGCAGTTCTTTGGTTCTGACTACGAAGATTATATGAGAAAAGTTCCTTCTGGTATTCCACTTGTGAGGTGATTATATCCTCTTCAGTGCTCTATATATTCATGCCTAACGTCATCTGCTCATCGGTGCTGAGATAACACTGTTTATGAATTTTATCTTCTTAGACACTCTTTACAGTTTTCATAACATGAAGTTCGCCAGAAAAAGGTTCCTCCTAGATATAACTTCTGAGGTGATGCTTCTATTAACCCTTGTATAGCGCGTTTATCTTATTTGTATCATCATGTTTTCGTCGTATCATGTCTTTGTTAAGACTTAGGTAAACTGTTCTTGTGGGGAGCTGTAAGTTATAACTGTATTTGTATTTATGGCTTGATGGGACAGTGTTTTTATCATACTCTTAAGGAGAAGAAAGGCTTT</gDNA_template>
            <first_frame> L  N  *  N  N  Y  L  A  F  I  R  S  G  C   : W  K  C  H  S  *  R  I  V  S  L  I  L  K  P  I  L  W  C  *  L  Y  R  A  H  Q  H  F  Q  V  W  S  *  N  L  K  H  S  V  S  Y  F  Q  A  F  D  D  S  D  *  D  L  I  L  V  T  L  T  R  G  F  V  *  L  I  R  V  K  W  Q  S  F  L  D  I  Q  H  A  D  N  Y  C  K  C  S  F  Q  L  Y  S  S  M  F  P  S  T  F  W  H  L  S  F  M  G  S  R  M  Y  L  L  S  R  F  *  *  A  N  I  M  Y  *  Q  C  F  A  P  *  *  N  T  L  L  K  S  I  S  F  P  A  *  R  N  I  G  G  *  V  I  L  A  S  Q  W  L  S  S  E  K  S  *  G  S  W  Q  L  *  Q  Q  A  K  P  S  L  I  *  *  R  F  I  M  R  K  I  I  S  W  L  R  M  G  S  I  D  L  S  G  I  P  V  T  V  V  S  S  S  G  L  L  V  H  K  *  C  Y  V  I  Q  Y  Q  P  L  H  S  Q  L  L  C  G  N  S  S  R  E  G  Y  L  T  R  S  F  S  S  S  S  S  L  V  L  T  T  K  I  I  *  E  K  F  L  L  V  F  H  L  *  G  D  Y  I  L  F  S  A  L  Y  I  H  A  *  R  H  L  L  I  G  A  E  I  T  L  F  M  N  F  I  F  L  D  T  L  Y  S  F  H  N  M  K  F  A  R  K  R  F  L  L  D  I  T  S  E  V  M  L  L  L  T  L  V  *  R  V  Y  L  I  C  I  I  M  F  S  S  Y  H  V  F  V  K  T  *  V  N  C  S  C  G  E  L  *  V  I  T  V  F  V  F  M  A  *  W  D  S  V  F  I  I  L  L  R  R  R  K  A   </first_frame>
            <second_frame>  L  I  K  I  I  T  S  P  S  S  D  L  V  V  :  G  N  V  I  L  K  G  *  F  H  *  F  *  S  P  F  C  G  A  N  C  T  E  L  I  N  I  F  R  F  G  V  E  I  *  N  I  A  Y  H  I  F  K  P  L  M  T  Q  T  E  T  S  F  *  *  L  *  R  E  V  L  F  D  L  F  A  *  N  G  R  A  F  W  I  Y  S  M  Q  T  I  I  A  N  V  H  F  N  Y  I  L  P  C  F  R  V  H  S  G  T  C  L  S  W  E  V  E  C  I  F  *  V  A  F  D  K  Q  T  L  C  T  S  N  V  L  L  L  D  R  I  P  Y  *  N  L  F  L  S  R  L  K  G  I  L  V  D  K  *  F  W  P  R  N  G  C  P  R  R  N  H  K  E  V  G  N  C  D  S  R  P  S  L  H  S  S  N  K  G  L  S  *  G  K  S  S  V  G  Y  E  W  D  L  *  I  C  P  A  S  R  L  L  W  F  L  H  L  V  C  W  Y  T  N  N  A  M  *  S  N  I  N  H  C  I  H  S  C  C  V  E  I  L  L  G  K  D  T  L  R  G  V  F  P  Q  A  V  L  W  F  *  L  R  R  L  Y  E  K  S  S  F  W  Y  S  T  C  E  V  I  I  S  S  S  V  L  Y  I  F  M  P  N  V  I  C  S  S  V  L  R  *  H  C  L  *  I  L  S  S  *  T  L  F  T  V  F  I  T  *  S  S  P  E  K  G  S  S  *  I  *  L  L  R  *  C  F  Y  *  P  L  Y  S  A  F  I  L  F  V  S  S  C  F  R  R  I  M  S  L  L  R  L  R  *  T  V  L  V  G  S  C  K  L  *  L  Y  L  Y  L  W  L  D  G  T  V  F  L  S  Y  S  *  G  E  E  R  L  </second_frame>
            <third_frame>   *  L  K  *  L  P  R  L  H  Q  I  W  L  L :   E  M  S  F  L  K  D  S  F  I  D  S  E  A  H  F  V  V  L  I  V  Q  S  S  S  T  F  S  G  L  E  L  K  F  E  T  *  R  I  I  F  S  S  L  *  *  L  R  L  R  P  H  F  S  N  F  N  E  R  F  C  L  T  Y  S  R  E  M  A  E  L  F  G  Y  T  A  C  R  Q  L  L  Q  M  F  I  S  I  I  F  F  H  V  S  E  Y  I  L  A  L  V  F  H  G  K  S  N  V  S  F  K  S  L  L  I  S  K  H  Y  V  L  A  M  F  C  S  L  I  E  Y  L  I  E  I  Y  F  F  P  G  L  K  E  Y  W  W  I  S  N  F  G  L  A  M  V  V  L  G  E  I  I  R  K  L  A  I  V  T  A  G  Q  A  F  T  H  L  I  K  V  Y  H  E  E  N  H  Q  L  V  T  N  G  I  Y  R  F  V  R  H  P  G  Y  C  G  F  F  I  W  S  V  G  T  Q  I  M  L  C  N  P  I  S  T  I  A  F  T  V  V  V  W  K  F  F  S  G  R  I  P  Y  E  E  F  F  L  K  Q  F  F  G  S  D  Y  E  D  Y  M  R  K  V  P  S  G  I  P  L  V  R  *  L  Y  P  L  Q  C  S  I  Y  S  C  L  T  S  S  A  H  R  C  *  D  N  T  V  Y  E  F  Y  L  L  R  H  S  L  Q  F  S  *  H  E  V  R  Q  K  K  V  P  P  R  Y  N  F  *  G  D  A  S  I  N  P  C  I  A  R  L  S  Y  L  Y  H  H  V  F  V  V  S  C  L  C  *  D  L  G  K  L  F  L  W  G  A  V  S  Y  N  C  I  C  I  Y  G  L  M  G  Q  C  F  Y  H  T  L  K  E  K  K  G  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11211" stop="10555"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRLRPHFSNFNERFCLTYSREMAELFGYTACRQLLQMFISIIFFHVSEYILALVFHGKSNVSFKSLLISKHYVLAMFCSLIEYLIEIYFFPGLKEYWWISNFGLAMVVLGEIIRKLAIVTAGQAFTHLIKVYHEENHQLVTNGIYRFVRHPGYCGFFIWSVGTQIMLCNPISTIAFTVVVWKFFSGRIPYEEFFLKQFFGSDYEDYMRKVPSGIPLVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12334" e_stop="11540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="12334" e_stop="11540" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12334" stop="11540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATTTTGTGCATCTTCGGTATGTTTTCGTATTTGAATGAACTGAATTTGTTGTTTTCTGTTTTTGTTTCTGTTCTTCTTTTGTGGATTTAGGGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTAATTTATGGGGTAGCTTATCGTCTAGCTCACAGGTACAGGTTCAGTTTAGTGTTGCTGCTGATACTCGAACTGGGGATTTTTCAGTTTTTTTTTCAACTCACTAGGTCATTCCCTTGGGCGGGGTGAATTTTATAGGGCAATTTATGGTGTTCGTGAACCTATGGTATATCTATCAACTTAGATATTTTGGGTAGATACTCCGTTGAATTAATCTAATATTATCTGTTGACATTGATGCTACAAAAAAAGAAGCTTAAATGGTGCACTTGATGCTAAAAAAAAGTTCGTTGTTTTAATGGTGCAGCGATGTTATAAAAATTCTATATCTTCATCTGCCATTGTGGACTCATGATAGAACTCAATTTTCGAGTCATTTACTAAATGATACTGATGATATCTGTGCTGTAGATGTTGATTTCTAGGATAACTTTTTTATTAAGTTGCTTTTATCTCAATTAGTTCGTTAAAGAATGTGATAGTTAAATAGTTAATAACTTGTTATTTTTCATGATTTAGTGATGGGAGTGTTAAATCACAAGTTATCAAGTGTAGTGAAAATGTGCCTGAATCCGGTTAGTTTGGATAGGTGTTATGTTGATTGATTGATTTTTACTTTATTAGAGAGTCCAATATCTAAAAGCTCTGTATTGACCCCAAAATCCCATT</gDNA_template>
            <first_frame> F  Y  F  V  H  L  R  Y  V  F  V  F  E  *  T  E  F  V  V  F  C  F  C  F  C  S  S  F  V  D  L  G  L  S  R  L  C  L  C  A  S  R  L  I  Y  G  V  A  Y  R  L  A  H  R  Y  R  F  S  L  V  L  L  L  I  L  E  L  G  I  F  Q  F  F  F  Q  L  T  R  S  F  P  W  A  G  *  I  L  *  G  N  L  W  C  S  *  T  Y  G  I  S  I  N  L  D  I  L  G  R  Y  S  V  E  L  I  *  Y  Y  L  L  T  L  M  L  Q  K  K  K  L  K  W  C  T  *  C  *  K  K  V  R  C  F  N  G  A  A  M  L  *  K  F  Y  I  F  I  C  H  C  G  L  M  I  E  L  N  F  R  V  I  Y  *  M  I  L  M  I  S  V  L  *  M  L  I  S  R  I  T  F  L  L  S  C  F  Y  L  N  *  F  V  K  E  C  D  S  *  I  V  N  N  L  L  F  F  M  I  *  *  W  E  C  *  I  T  S  Y  Q  V  *  *  K  C  A  *  I  R  L  V  W  I  G  V  M  L  I  D  *  F  L  L  Y  *  R  V  Q  Y  L  K  A  L  Y  *  P  Q  N  P  I </first_frame>
            <second_frame>  F  I  L  C  I  F  G  M  F  S  Y  L  N  E  L  N  L  L  F  S  V  F  V  S  V  L  L  L  W  I  *  G  *  A  A  F  A  C  V  H  L  D  *  F  M  G  *  L  I  V  *  L  T  G  T  G  S  V  *  C  C  C  *  Y  S  N  W  G  F  F  S  F  F  F  N  S  L  G  H  S  L  G  R  G  E  F  Y  R  A  I  Y  G  V  R  E  P  M  V  Y  L  S  T  *  I  F  W  V  D  T  P  L  N  *  S  N  I  I  C  *  H  *  C  Y  K  K  R  S  L  N  G  A  L  D  A  K  K  K  F  V  V  L  M  V  Q  R  C  Y  K  N  S  I  S  S  S  A  I  V  D  S  *  *  N  S  I  F  E  S  F  T  K  *  Y  *  *  Y  L  C  C  R  C  *  F  L  G  *  L  F  Y  *  V  A  F  I  S  I  S  S  L  K  N  V  I  V  K  *  L  I  T  C  Y  F  S  *  F  S  D  G  S  V  K  S  Q  V  I  K  C  S  E  N  V  P  E  S  G  *  F  G  *  V  L  C  *  L  I  D  F  Y  F  I  R  E  S  N  I  *  K  L  C  I  D  P  K  I  P   </second_frame>
            <third_frame>   L  F  C  A  S  S  V  C  F  R  I  *  M  N  *  I  C  C  F  L  F  L  F  L  F  F  F  C  G  F  R  V  E  P  P  L  L  V  C  I  S  I  N  L  W  G  S  L  S  S  S  S  Q  V  Q  V  Q  F  S  V  A  A  D  T  R  T  G  D  F  S  V  F  F  S  T  H  *  V  I  P  L  G  G  V  N  F  I  G  Q  F  M  V  F  V  N  L  W  Y  I  Y  Q  L  R  Y  F  G  *  I  L  R  *  I  N  L  I  L  S  V  D  I  D  A  T  K  K  E  A  *  M  V  H  L  M  L  K  K  S  S  L  F  *  W  C  S  D  V  I  K  I  L  Y  L  H  L  P  L  W  T  H  D  R  T  Q  F  S  S  H  L  L  N  D  T  D  D  I  C  A  V  D  V  D  F  *  D  N  F  F  I  K  L  L  L  S  Q  L  V  R  *  R  M  *  *  L  N  S  *  *  L  V  I  F  H  D  L  V  M  G  V  L  N  H  K  L  S  S  V  V  K  M  C  L  N  P  V  S  L  D  R  C  Y  V  D  *  L  I  F  T  L  L  E  S  P  I  S  K  S  S  V  L  T  P  K  S  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12292" stop="12080"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEFVVFCFCFCSSFVDLGLSRLCLCASRLIYGVAYRLAHRYRFSLVLLLILELGIFQFFFQLTRSFPWAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="17235" PGL_stop="19173"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17235" e_stop="17275"/>
            <exon e_start="18442" e_stop="19173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.808" acc_prob="0.989" e_score="0.878"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.878">
            <gDNA_exon_boundary e_start="17235" e_stop="17275" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.808" acc_prob="0.989">
            <gDNA_intron_boundary i_start="17276" i_stop="18441" i_length="1166"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="18442" e_stop="19173" e_length="732"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17235" stop="17275"/>
              <exon start="18442" stop="19173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCAGTGGATCTCTGGTTTTATTTTGTTTTACCTTCAATA : AGTAACAGGATACAGAGGGGATAATCTTTTCTATGAGGAAGTGCAAGTCTTGATTTTTTTTCCATATAAGCCTTGCTTCTTAGAATCTGTTGAACTATCGAAAAGTTTGAGCTATTCGACACCAAATTTCTCTTAGTCTTTGAAGTTTATCGGCTTATTCTTTCATCTCCAGATAGAAACCGATATTCAATCACCATTGTATTCCATTAAGTATATGACAGTGTTACCAAAGTGTAGATACAAGTAAAGCAATGAGTCAGTTTTCGTTTACTTCTTCTTCGAGCTCTAATTTCACTCTCTTCTATCATTCTCAGAATCATAATCCTTCAAAGTTTCATGTTTCTGCTCCCTTTAGAACATCCCAACCATCGCCTTCACATCCTATTTTACCTCCCTTATGTTCCCGTGATCCGTCTTCCTCATCACCACTTCTTGAAGAAAAGCCAGAAACATCACAATCTTCTTCTAAGTTTGATCCTCAAGATACACTAAGTTACAATGATGAAGTTTCTGAGGAGATCAGCACTACAAAGAAGTCCTTGGAAGAGTTACTTGTTGTTCGTAGGCCGGTGAAGGAGTCTTCCGTGGAAAATGATGATGAAAAAGGGGAAGCAGTGAGTAACTTTGAGGATTCTCAAGAGAGAAATGATATTCTGGAAGAACAACCATCTTCCTCATCATTTCCACTTGATGCTGGCCTTAAGAAATTTGCAAAAAAAGTGCCAATTTTTG</gDNA_template>
            <first_frame> N  Q  W  I  S  G  F  I  L  F  Y  L  Q  * :   V  T  G  Y  R  G  D  N  L  F  Y  E  E  V  Q  V  L  I  F  F  P  Y  K  P  C  F  L  E  S  V  E  L  S  K  S  L  S  Y  S  T  P  N  F  S  *  S  L  K  F  I  G  L  F  F  H  L  Q  I  E  T  D  I  Q  S  P  L  Y  S  I  K  Y  M  T  V  L  P  K  C  R  Y  K  *  S  N  E  S  V  F  V  Y  F  F  F  E  L  *  F  H  S  L  L  S  F  S  E  S  *  S  F  K  V  S  C  F  C  S  L  *  N  I  P  T  I  A  F  T  S  Y  F  T  S  L  M  F  P  *  S  V  F  L  I  T  T  S  *  R  K  A  R  N  I  T  I  F  F  *  V  *  S  S  R  Y  T  K  L  Q  *  *  S  F  *  G  D  Q  H  Y  K  E  V  L  G  R  V  T  C  C  S  *  A  G  E  G  V  F  R  G  K  *  *  *  K  R  G  S  S  E  *  L  *  G  F  S  R  E  K  *  Y  S  G  R  T  T  I  F  L  I  I  S  T  *  C  W  P  *  E  I  C  K  K  S  A  N  F   </first_frame>
            <second_frame>  I  S  G  S  L  V  L  F  C  F  T  F  N   : K  *  Q  D  T  E  G  I  I  F  S  M  R  K  C  K  S  *  F  F  F  H  I  S  L  A  S  *  N  L  L  N  Y  R  K  V  *  A  I  R  H  Q  I  S  L  S  L  *  S  L  S  A  Y  S  F  I  S  R  *  K  P  I  F  N  H  H  C  I  P  L  S  I  *  Q  C  Y  Q  S  V  D  T  S  K  A  M  S  Q  F  S  F  T  S  S  S  S  S  N  F  T  L  F  Y  H  S  Q  N  H  N  P  S  K  F  H  V  S  A  P  F  R  T  S  Q  P  S  P  S  H  P  I  L  P  P  L  C  S  R  D  P  S  S  S  S  P  L  L  E  E  K  P  E  T  S  Q  S  S  S  K  F  D  P  Q  D  T  L  S  Y  N  D  E  V  S  E  E  I  S  T  T  K  K  S  L  E  E  L  L  V  V  R  R  P  V  K  E  S  S  V  E  N  D  D  E  K  G  E  A  V  S  N  F  E  D  S  Q  E  R  N  D  I  L  E  E  Q  P  S  S  S  S  F  P  L  D  A  G  L  K  K  F  A  K  K  V  P  I  F  </second_frame>
            <third_frame>   S  V  D  L  W  F  Y  F  V  L  P  S  I  :  S  N  R  I  Q  R  G  *  S  F  L  *  G  S  A  S  L  D  F  F  S  I  *  A  L  L  L  R  I  C  *  T  I  E  K  F  E  L  F  D  T  K  F  L  L  V  F  E  V  Y  R  L  I  L  S  S  P  D  R  N  R  Y  S  I  T  I  V  F  H  *  V  Y  D  S  V  T  K  V  *  I  Q  V  K  Q  *  V  S  F  R  L  L  L  L  R  A  L  I  S  L  S  S  I  I  L  R  I  I  I  L  Q  S  F  M  F  L  L  P  L  E  H  P  N  H  R  L  H  I  L  F  Y  L  P  Y  V  P  V  I  R  L  P  H  H  H  F  L  K  K  S  Q  K  H  H  N  L  L  L  S  L  I  L  K  I  H  *  V  T  M  M  K  F  L  R  R  S  A  L  Q  R  S  P  W  K  S  Y  L  L  F  V  G  R  *  R  S  L  P  W  K  M  M  M  K  K  G  K  Q  *  V  T  L  R  I  L  K  R  E  M  I  F  W  K  N  N  H  L  P  H  H  F  H  L  M  L  A  L  R  N  L  Q  K  K  C  Q  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18660" stop="19172"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QCYQSVDTSKAMSQFSFTSSSSSNFTLFYHSQNHNPSKFHVSAPFRTSQPSPSHPILPPLCSRDPSSSSPLLEEKPETSQSSSKFDPQDTLSYNDEVSEEISTTKKSLEELLVVRRPVKESSVENDDEKGEAVSNFEDSQERNDILEEQPSSSSFPLDAGLKKFAKKVPIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20429" PGL_stop="22813"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20429" e_stop="20444"/>
            <exon e_start="20549" e_stop="20608"/>
            <exon e_start="21048" e_stop="21293"/>
            <exon e_start="21527" e_stop="21637"/>
            <exon e_start="21836" e_stop="22012"/>
            <exon e_start="22121" e_stop="22813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.880" e_score="0.983"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.850" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20429" e_stop="20444" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20445" i_stop="20548" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="20549" e_stop="20608" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.880">
            <gDNA_intron_boundary i_start="20609" i_stop="21047" i_length="439"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21048" e_stop="21293" e_length="246"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21294" i_stop="21526" i_length="233"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21527" e_stop="21637" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.969">
            <gDNA_intron_boundary i_start="21638" i_stop="21835" i_length="198"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21836" e_stop="22012" e_length="177"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.850">
            <gDNA_intron_boundary i_start="22013" i_stop="22120" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="0.974">
            <gDNA_exon_boundary e_start="22121" e_stop="22813" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20429" stop="20444"/>
              <exon start="20549" stop="20608"/>
              <exon start="21048" stop="21293"/>
              <exon start="21527" stop="21637"/>
              <exon start="21836" stop="22012"/>
              <exon start="22121" stop="22813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTGCTAGTTGGCTG : GCATGGGCTCAACTAGAGGCTCAGTTAGAGAATAACCGTTCCGCTAGGCAGCTGTTTGAG : AAAGCAGTTCAAGCCAGTCCGAAAAATAGGTTCGCGTGGCATGTATGGGGAGTTTTTGAAGCTAATCTAGGAAATATTGATCAAGGAAGGAAACTTCTAACAATAGGGCACATGGTGAATCCTAGAGATCCTGTTCTTCTCCAATCACTTGGTTTGATAGAATACAAGAACTCCAGTGCAAACCTTGCACGAGTTCTATTCCGAAGAGCGTCTCAACTAGATCCAAGGCATCAACCAGTTTGGATT : GCTTGGGGTTGGATGGAGTGGAAAGAAGGAAACATTTCCACAGCTCGAGAACTATACCAGAAGGCTCTATCGATCAACTCAACAACTGAAAGTGCTGCGCGTTGTCTTCAG : GCTTGGGGTGTTTTGGAGCAAAGAGCTGGAAATCTATCAGCTGCTCGAAGACTATTTAGATCGTCTCTGAACATAAACTCTCAGAGCTATATAACATGGATGACATGGGCAAATTTAGAGGAAGATCAAGGTAACTCTATCCGTGCAGAGGAAATTCGTAACCTCTACTTTCAACAG : CGTACTGAAGTTGTTGATGATGAGTCGTGGATTATGGGCTTCTTAGACGTCATTGACCCAGCGATTGACAGCATAAAGAGGCTCTTGAATCTAGATCAGAACTCTTACTACAAGGTAAAAGAGTCTGCTTCTAATACTACTGCTGGAGACGACGTTGAGGGGAGCACAGAAGAATCAGCTTCTCCCTCCTCGGCTAACGTCAATGACAATAACATAGATACAGGAAGTGGCTTTGATTTAGATGATTTTATCAGTGTAATGCTGTCTTTAGACCCTTCAAAGCTGGAAGTTCAGCTTACAACATCTCTTAAGGACCCTCCGAAAATCGCCAGAACTACTAATGGGGTGTGGCGACCATCGACAAAGACTAGTAGAACATCAACAACACTTTGATTTTACAACAACAACGACATACTTAATGTAACCTCACTAGTGTGGTCTGGGAGGGCGGAGGACGAAAGGTGATGTGTTGCAGCCTTACCTTTACCTCGTGAAGGTAGAGAGACTGTTTCTGACTCAGCTCAATATGAAGTTTATTGTTCTTTAGTGGGAATTGCAACATTCATTAATGTTGTCAAATGAAGAAGTCTTGGTCCACATTTTGTAAATTACTTAGGAATATTGAGAAGAATTGTATAAATTTGATTGTGAAAGAGATACAAATCTACACATATTATGAGTAAACATTGTATA</gDNA_template>
            <first_frame> L  C  *  L  A   : G  M  G  S  T  R  G  S  V  R  E  *  P  F  R  *  A  A  V  *   : E  S  S  S  S  Q  S  E  K  *  V  R  V  A  C  M  G  S  F  *  S  *  S  R  K  Y  *  S  R  K  E  T  S  N  N  R  A  H  G  E  S  *  R  S  C  S  S  P  I  T  W  F  D  R  I  Q  E  L  Q  C  K  P  C  T  S  S  I  P  K  S  V  S  T  R  S  K  A  S  T  S  L  D   : C  L  G  L  D  G  V  E  R  R  K  H  F  H  S  S  R  T  I  P  E  G  S  I  D  Q  L  N  N  *  K  C  C  A  L  S  S   : G  L  G  C  F  G  A  K  S  W  K  S  I  S  C  S  K  T  I  *  I  V  S  E  H  K  L  S  E  L  Y  N  M  D  D  M  G  K  F  R  G  R  S  R  *  L  Y  P  C  R  G  N  S  *  P  L  L  S  T   : A  Y  *  S  C  *  *  *  V  V  D  Y  G  L  L  R  R  H  *  P  S  D  *  Q  H  K  E  A  L  E  S  R  S  E  L  L  L  Q  G  K  R  V  C  F  *  Y  Y  C  W  R  R  R  *  G  E  H  R  R  I  S  F  S  L  L  G  *  R  Q  *  Q  *  H  R  Y  R  K  W  L  *  F  R  *  F  Y  Q  C  N  A  V  F  R  P  F  K  A  G  S  S  A  Y  N  I  S  *  G  P  S  E  N  R  Q  N  Y  *  W  G  V  A  T  I  D  K  D  *  *  N  I  N  N  T  L  I  L  Q  Q  Q  R  H  T  *  C  N  L  T  S  V  V  W  E  G  G  G  R  K  V  M  C  C  S  L  T  F  T  S  *  R  *  R  D  C  F  *  L  S  S  I  *  S  L  L  F  F  S  G  N  C  N  I  H  *  C  C  Q  M  K  K  S  W  S  T  F  C  K  L  L  R  N  I  E  K  N  C  I  N  L  I  V  K  E  I  Q  I  Y  T  Y  Y  E  *  T  L  Y  </first_frame>
            <second_frame>  C  A  S  W  L  :  A  W  A  Q  L  E  A  Q  L  E  N  N  R  S  A  R  Q  L  F  E  :  K  A  V  Q  A  S  P  K  N  R  F  A  W  H  V  W  G  V  F  E  A  N  L  G  N  I  D  Q  G  R  K  L  L  T  I  G  H  M  V  N  P  R  D  P  V  L  L  Q  S  L  G  L  I  E  Y  K  N  S  S  A  N  L  A  R  V  L  F  R  R  A  S  Q  L  D  P  R  H  Q  P  V  W  I  :  A  W  G  W  M  E  W  K  E  G  N  I  S  T  A  R  E  L  Y  Q  K  A  L  S  I  N  S  T  T  E  S  A  A  R  C  L  Q  :  A  W  G  V  L  E  Q  R  A  G  N  L  S  A  A  R  R  L  F  R  S  S  L  N  I  N  S  Q  S  Y  I  T  W  M  T  W  A  N  L  E  E  D  Q  G  N  S  I  R  A  E  E  I  R  N  L  Y  F  Q  Q  :  R  T  E  V  V  D  D  E  S  W  I  M  G  F  L  D  V  I  D  P  A  I  D  S  I  K  R  L  L  N  L  D  Q  N  S  Y  Y  K  V  K  E  S  A  S  N  T  T  A  G  D  D  V  E  G  S  T  E  E  S  A  S  P  S  S  A  N  V  N  D  N  N  I  D  T  G  S  G  F  D  L  D  D  F  I  S  V  M  L  S  L  D  P  S  K  L  E  V  Q  L  T  T  S  L  K  D  P  P  K  I  A  R  T  T  N  G  V  W  R  P  S  T  K  T  S  R  T  S  T  T  L  *  F  Y  N  N  N  D  I  L  N  V  T  S  L  V  W  S  G  R  A  E  D  E  R  *  C  V  A  A  L  P  L  P  R  E  G  R  E  T  V  S  D  S  A  Q  Y  E  V  Y  C  S  L  V  G  I  A  T  F  I  N  V  V  K  *  R  S  L  G  P  H  F  V  N  Y  L  G  I  L  R  R  I  V  *  I  *  L  *  K  R  Y  K  S  T  H  I  M  S  K  H  C  I </second_frame>
            <third_frame>   V  L  V  G  W :   H  G  L  N  *  R  L  S  *  R  I  T  V  P  L  G  S  C  L  R :   K  Q  F  K  P  V  R  K  I  G  S  R  G  M  Y  G  E  F  L  K  L  I  *  E  I  L  I  K  E  G  N  F  *  Q  *  G  T  W  *  I  L  E  I  L  F  F  S  N  H  L  V  *  *  N  T  R  T  P  V  Q  T  L  H  E  F  Y  S  E  E  R  L  N  *  I  Q  G  I  N  Q  F  G  L :   L  G  V  G  W  S  G  K  K  E  T  F  P  Q  L  E  N  Y  T  R  R  L  Y  R  S  T  Q  Q  L  K  V  L  R  V  V  F  R :   L  G  V  F  W  S  K  E  L  E  I  Y  Q  L  L  E  D  Y  L  D  R  L  *  T  *  T  L  R  A  I  *  H  G  *  H  G  Q  I  *  R  K  I  K  V  T  L  S  V  Q  R  K  F  V  T  S  T  F  N  S :   V  L  K  L  L  M  M  S  R  G  L  W  A  S  *  T  S  L  T  Q  R  L  T  A  *  R  G  S  *  I  *  I  R  T  L  T  T  R  *  K  S  L  L  L  I  L  L  L  E  T  T  L  R  G  A  Q  K  N  Q  L  L  P  P  R  L  T  S  M  T  I  T  *  I  Q  E  V  A  L  I  *  M  I  L  S  V  *  C  C  L  *  T  L  Q  S  W  K  F  S  L  Q  H  L  L  R  T  L  R  K  S  P  E  L  L  M  G  C  G  D  H  R  Q  R  L  V  E  H  Q  Q  H  F  D  F  T  T  T  T  T  Y  L  M  *  P  H  *  C  G  L  G  G  R  R  T  K  G  D  V  L  Q  P  Y  L  Y  L  V  K  V  E  R  L  F  L  T  Q  L  N  M  K  F  I  V  L  *  W  E  L  Q  H  S  L  M  L  S  N  E  E  V  L  V  H  I  L  *  I  T  *  E  Y  *  E  E  L  Y  K  F  D  C  E  R  D  T  N  L  H  I  L  *  V  N  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20430" stop="20444"/>
                    <exon start="20549" stop="20608"/>
                    <exon start="21048" stop="21293"/>
                    <exon start="21527" stop="21637"/>
                    <exon start="21836" stop="22012"/>
                    <exon start="22121" stop="22513"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CASWLAWAQLEAQLENNRSARQLFEKAVQASPKNRFAWHVWGVFEANLGNIDQGRKLLTIGHMVNPRDPVLLQSLGLIEYKNSSANLARVLFRRASQLDPRHQPVWIAWGWMEWKEGNISTARELYQKALSINSTTESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYITWMTWANLEEDQGNSIRAEEIRNLYFQQRTEVVDDESWIMGFLDVIDPAIDSIKRLLNLDQNSYYKVKESASNTTAGDDVEGSTEESASPSSANVNDNNIDTGSGFDLDDFISVMLSLDPSKLEVQLTTSLKDPPKIARTTNGVWRPSTKTSRTSTTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="25553" PGL_stop="28927"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25553" e_stop="25712"/>
            <exon e_start="25829" e_stop="25942"/>
            <exon e_start="26841" e_stop="27142"/>
            <exon e_start="27726" e_stop="27970"/>
            <exon e_start="28060" e_stop="28731"/>
            <exon e_start="28861" e_stop="28927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.478"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25553" e_stop="25712" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25829" e_stop="25942" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26841" e_stop="27142" e_length="302"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27726" e_stop="27970" e_length="245"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.982">
            <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="28060" e_stop="28731" e_length="672"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28732" i_stop="28860" i_length="129"/>
          </intron>
          <exon e_serial="6" e_score="0.478">
            <gDNA_exon_boundary e_start="28861" e_stop="28927" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25553" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28731"/>
              <exon start="28861" stop="28927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26852" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333580" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG : GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT : ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG : AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG : GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACA : AAAGAGACTTTCATTTGCTGAAACGGACTACAAAAAGAAAGTAGGACAAGTAAATTGAAACGGAGGG</gDNA_template>
            <first_frame> I  Y  L  S  S  I  I  S  S  I  F  F  P  P  F  I  H  S  *  T  S  T  I  F  L  H  Q  H  I  N  C  T  A  V  A  V  I  L  L  K  N  N  G  C  S  L  S  S  Q  H  F  S  *   : G  *  Q  Q  R  I  L  *  I  L  W  F  E  N  L  I  S  C  S  I  W  E  E  N  *  *  *  F  V  L  C  C  W  L  T  N  L  C   : Y  W  R  K  E  E  Q  E  D  S  N  *  G  K  V  E  S  G  Y  Q  W  I  W  K  N  W  K  E  L  L  E  V  L  A  W  *  K  R  L  T  S  *  C  H  C  H  Q  *  H  W  W  C  Q  A  S  L  S  P  S  Q  I  *  L  H  P  W  H  L  *  C  *  R  Q  A  G  W  H  *  W  H  L  C  R  W  K  S  H  P  S  R  L  Q  P  *  P  C  E  P  P  M  G  :  R  T  W  S  *  L  S  H  R  R  Y  R  S  F  C  R  Q  R  R  C  R  *  T  H  P  G  R  S  Q  E  G  A  H  H  R  P  R  K  R  *  H  P  Y  L  C  C  W  C  Q  C  *  T  L  Q  P  *  *  T  Y  H  Q  Q  C  L  L  Y  H  Q  L  P  C  S  F  R  Q  G  S  *  P  E  I  W :   N  Y  Q  G  N  N  D  N  Y  S  L  L  H  R  *  P  K  A  S  *  C  K  P  Q  G  S  *  T  C  T  S  C  S  T  E  H  S  S  N  L  N  W  C  C  *  G  C  G  S  C  S  P  K  P  Q  G  E  T  Q  R  H  C  P  P  C  S  H  P  *  R  L  G  C  G  P  C  C  A  S  H  Q  E  D  I  C  *  G  S  E  C  C  I  Q  R  G  R  *  *  G  T  Q  W  H  S  I  C  L  *  *  T  T  R  V  S  *  L  P  V  Q  *  R  V  I  N  C  *  F  F  T  H  H  G  H  G  R  *  H  G  *  G  Y  C  L  V  *  Q  *  M  G  L  L  T  E  G  C  *  S  C  *  H  C  C  K  P  V  E  M  K  H  E  N  K  I  K  Q  Y  Y  *  I  V  A  *  F  I  F  F  *  P  C  L  *  I  L  I  P  F  *  K  L  *  *  E  L  *  Q  F  S  T  L  *  N  L  N  S  I  K  V  P  F  L  V  F  I  Q :   K  R  L  S  F  A  E  T  D  Y  K  K  K  V  G  Q  V  N  *  N  G  G </first_frame>
            <second_frame>  S  I  Y  H  P  *  S  H  P  F  S  S  L  H  S  F  I  H  K  L  P  Q  F  F  F  I  N  T  *  T  V  L  L  L  L  *  F  S  *  R  T  M  A  A  L  S  V  A  N  T  S  L  K  :  V  N  N  K  G  F  S  E  F  S  G  L  R  T  S  S  A  V  P  F  G  R  K  T  N  D  D  L  F  S  V  A  G  L  Q  T  S  A  :  I  G  G  R  K  N  K  R  I  V  T  E  A  K  L  K  V  A  I  N  G  F  G  R  I  G  R  N  F  L  R  C  W  H  G  R  K  D  S  P  L  D  V  I  A  I  N  D  T  G  G  V  K  Q  A  S  H  L  L  K  Y  D  S  T  L  G  I  F  D  A  D  V  K  P  V  G  T  D  G  I  S  V  D  G  K  V  I  Q  V  V  S  N  R  D  P  V  N  L  P  W  G :   E  L  G  V  D  L  V  I  E  G  T  G  V  F  V  D  R  E  G  A  G  K  H  I  Q  A  G  A  K  K  V  L  I  T  A  P  G  K  G  D  I  P  T  Y  V  V  G  V  N  A  E  L  Y  S  H  D  E  P  I  I  S  N  A  S  C  T  T  N  C  L  A  P  F  V  K  V  L  D  Q  K  F   : G  I  I  K  G  T  M  T  T  T  H  S  Y  T  G  D  Q  R  L  L  D  A  S  H  R  D  L  R  R  A  R  A  A  A  L  N  I  V  P  T  S  T  G  A  A  K  A  V  A  L  V  L  P  S  L  K  G  K  L  N  G  I  A  L  R  V  P  T  P  N  V  S  V  V  D  L  V  V  Q  V  T  K  K  T  F  A  E  E  V  N  A  A  F  R  E  A  A  D  K  E  L  N  G  I  L  S  V  C  D  E  P  L  V  S  V  D  F  R  C  S  D  V  S  S  T  V  D  S  S  L  T  M  V  M  G  D  D  M  V  K  V  I  A  W  Y  D  N  E  W  G  Y  S  Q  R  V  V  D  L  A  D  I  V  A  N  Q  W  K  *  N  M  K  I  K  *  S  S  T  T  K  *  W  L  N  L  Y  F  F  N  L  A  C  R  F  L  F  L  F  E  N  C  N  E  N  Y  N  N  F  P  P  C  E  I  S  I  Q  *  K  S  P  F  L  S  L  Y   : K  R  D  F  H  L  L  K  R  T  T  K  R  K  *  D  K  *  I  E  T  E   </second_frame>
            <third_frame>   L  S  I  I  H  N  L  I  H  F  L  P  S  I  H  S  F  I  N  F  H  N  F  S  S  S  T  H  K  L  Y  C  C  C  C  N  S  L  K  E  Q  W  L  L  S  Q  *  P  T  L  L  L  R :   L  T  T  K  D  S  L  N  S  L  V  *  E  P  H  Q  L  F  H  L  G  G  K  L  M  M  I  C  S  L  L  L  A  Y  K  P  L  L :   L  E  E  G  R  T  R  G  *  *  L  R  Q  S  *  K  W  L  S  M  D  L  E  E  L  E  G  T  S  *  G  A  G  M  V  E  K  T  H  L  L  M  S  L  P  S  M  T  L  V  V  S  S  K  P  L  T  F  S  N  M  T  P  P  L  A  S  L  M  L  T  S  S  R  L  A  L  M  A  S  L  S  M  E  K  S  S  K  S  S  P  T  V  T  L  *  T  S  H  G   : E  N  L  E  L  T  *  S  *  K  V  P  E  F  L  *  T  E  K  V  P  V  N  T  S  R  P  E  P  R  R  C  S  S  P  P  P  E  K  V  T  S  L  L  M  L  L  V  S  M  L  N  F  T  A  M  M  N  L  S  S  A  M  P  L  V  P  P  T  A  L  L  L  S  S  R  F  L  T  R  N  L  :  E  L  S  R  E  Q  *  Q  L  L  T  L  T  P  V  T  K  G  F  L  M  Q  A  T  G  I  L  D  V  H  E  L  Q  H  *  T  *  F  Q  P  Q  L  V  L  L  R  L  W  L  L  F  S  Q  A  S  R  G  N  S  T  A  L  P  S  V  F  P  P  L  T  S  R  L  W  T  L  L  C  K  S  P  R  R  H  L  L  R  K  *  M  L  H  S  E  R  P  L  I  R  N  S  M  A  F  Y  L  S  V  M  N  H  S  C  Q  L  T  S  G  A  V  T  C  H  Q  L  L  I  L  H  S  P  W  S  W  E  M  T  W  L  R  L  L  L  G  M  T  M  N  G  V  T  H  R  G  L  L  I  L  L  T  L  L  Q  T  S  G  N  E  T  *  K  *  N  K  A  V  L  L  N  S  G  L  I  Y  I  F  L  T  L  L  V  D  S  Y  S  F  L  K  I  V  M  R  T  I  T  I  F  H  L  V  K  S  Q  F  N  K  S  P  L  S  C  L  Y  T  :  K  E  T  F  I  C  *  N  G  L  Q  K  E  S  R  T  S  K  L  K  R  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25671" stop="25712"/>
                    <exon start="25829" stop="25942"/>
                    <exon start="26841" stop="27142"/>
                    <exon start="27726" stop="27970"/>
                    <exon start="28060" stop="28562"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTMAALSVANTSLKVNNKGFSEFSGLRTSSAVPFGRKTNDDLFSVAGLQTSAIGGRKNKRIVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSNRDPVNLPWGELGVDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAELYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFREAADKELNGILSVCDEPLVSVDFRCSDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="30483" PGL_stop="28529"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30483" e_stop="30463"/>
            <exon e_start="28746" e_stop="28529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.793" acc_prob="0.000" e_score="0.571"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="30483" e_stop="30463" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.793" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30462" i_stop="28747" i_length="1716"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28746" e_stop="28529" e_length="218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30483" stop="30463"/>
              <exon start="28746" stop="28529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312458" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTCATCTCTGTTGTCTTTG : TATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGA</gDNA_template>
            <first_frame> L  S  S  L  L  S  L  :  Y  T  E  A  D  C  I  K  T  R  K  G  T  F  I  E  L  R  F  H  K  V  E  N  C  Y  S  S  H  Y  N  F  Q  K  G  I  R  I  Y  K  Q  G  *  K  N  I  N  *  A  T  I  *  *  Y  C  F  I  L  F  S  C  F  I  S  T  G  L  Q  Q  C  Q  Q   </first_frame>
            <second_frame>  C  H  L  C  C  L  C :   I  Q  K  R  T  V  *  R  Q  E  R  G  L  L  L  N  *  D  F  T  R  W  K  I  V  I  V  L  I  T  I  F  K  K  E  *  E  S  T  S  K  V  K  K  I  *  I  K  P  L  F  S  S  T  A  L  F  Y  F  H  V  S  F  P  L  V  C  N  N  V  S  K  </second_frame>
            <third_frame>   V  I  S  V  V  F   : V  Y  R  S  G  L  Y  K  D  K  K  G  D  F  Y  *  I  E  I  S  Q  G  G  K  L  L  *  F  S  L  Q  F  S  K  R  N  K  N  L  Q  A  R  L  K  K  Y  K  L  S  H  Y  L  V  V  L  L  Y  F  I  F  M  F  H  F  H  W  F  A  T  M  S  A  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0127L14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="45578" PGL_stop="39457"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45578" e_stop="44495"/>
            <exon e_start="44394" e_stop="44058"/>
            <exon e_start="41996" e_stop="41391"/>
            <exon e_start="40428" e_stop="40280"/>
            <exon e_start="40001" e_stop="39872"/>
            <exon e_start="39787" e_stop="39457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.894" e_score="0.994"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.814" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="45578" e_stop="44495" e_length="1084"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.894">
            <gDNA_intron_boundary i_start="44494" i_stop="44395" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44394" e_stop="44058" e_length="337"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41996" e_stop="41391" e_length="606"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41390" i_stop="40429" i_length="962"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40428" e_stop="40280" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40279" i_stop="40002" i_length="278"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40001" e_stop="39872" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.930" acc_prob="0.814">
            <gDNA_intron_boundary i_start="39871" i_stop="39788" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39787" e_stop="39457" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45578" stop="44495"/>
              <exon start="44394" stop="44380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44550" stop="44495"/>
              <exon start="44394" stop="44058"/>
              <exon start="41996" stop="41391"/>
              <exon start="40428" stop="40280"/>
              <exon start="40001" stop="39872"/>
              <exon start="39787" stop="39457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG : AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG : TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG : ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG : ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTA</gDNA_template>
            <first_frame> T  S  N  F  G  S  *  F  *  L  F  V  N  E  F  L  L  C  C  C  F  V  A  V  *  I  *  G  G  V  L  S  A  N  E  F  F  N  F  I  F  C  C  K  K  K  K  S  N  F  G  K  W  M  F  T  *  G  E  K  S  F  K  L  M  N  *  F  C  L  L  K  N  E  R  E  E  I  N  L  E  I  E  F  *  L  R  R  R  F  S  A  Y  E  T  D  F  *  *  R  R  G  I  Y  L  S  N  T  L  I  A  L  K  R  A  E  L  S  Y  L  *  R  W  K  *  S  Y  L  N  P  N  Y  D  D  F  N  L  K  K  Q  I  L  C  S  I  F  D  L  L  I  L  R  K  H  P  L  *  L  F  T  A  K  I  L  *  L  M  L  *  L  K  D  V  A  L  D  E  V  C  I  S  D  D  H  I  V  P  H  P  S  C  E  H  A  N  E  V  S  L  P  D  *  *  P  *  E  T  P  V  *  N  N  W  F  I  K  N  H  R  S  N  L  L  L  N  I  I  I  S  K  R  A  K  K  F  L  L  Y  I  V  Q  *  W  R  R  T  R  G  L  V  G  L  I  A  C  S  L  L  N  M  I  R  T  L  L  K  K  F  Q  V  Y  H  L  K  I  L  G  H  Q  M  I  A  P  E  V  T  I  *  T  P  L  A  V  R  S  S  P  I  T  P  F  W  M  T  R  I  L  Q  L  G  T  T  C  I  A  I  L  L  V  P  F  L  R  Q  M  M  I  L  V  F  L  I  V  I  M  R  I  K  V  V  P  S  S  Y  I  I  T  G  L  R  W  K  T  L  R  M  L  T  G  C  S   : E  V  V  I  Q  H  L  E  L  E  L  V  S  K  M  T  L  V  G  F  R  H  L  V  L  L  K  D  L  E  V  D  *  G  Q  I  W  S  L  P  S  Q  H  P  V  H  L  K  I  S  L  E  C  R  K  L  P  G  Q  R  K  Q  A  I  Q  L  M  I  L  A  L  K  I  N  S  S  V  R  L  A  V  Q  C  H  Q  R  M  N  Q  P  F  *  V  I  Y  L  L  Q  M  V  Q  V  I  Q  I  S  R  *  C  P  *  R  R :   L  I  F  T  K  L  T  L  S  S  R  I  N  L  R  E  K  E  N  M  F  T  W  K  M  G  R  H  S  T  I  L  I  A  F  Q  K  R  E  T  I  L  L  Q  S  L  D  L  R  L  S  H  P  Q  V  F  S  S  T  S  K  L  M  D  L  I  L  G  I  F  R  M  A  F  L  T  Y  L  Q  I  T  V  I  Q  I  R  L  R  F  V  Q  P  Y  P  Q  L  N  L  K  K  A  V  S  *  L  F  L  L  R  T  P  V  R  Q  I  R  C  S  *  W  K  A  Y  L  I  L  L  F  R  W  L  V  *  E  Q  M  K  I  W  W  T  S  Y  F  N  V  L  *  L  S  M  K  T  T  G  I  L  K  V  S  A  R  E  F  Q  Q  K  *  V  P  L  L  *  R  R  A  L  A  Q  V  L  G  *  M  K  F  L  R  R  Q  I  V  F  I  S  L  N  M  S  W  N  G :   W  M  *  E  Q  S  Y  G  *  G  I  A  C  I  G  W  L  R  V  L  N  K  G  L  D  M  L  I  S  I  M  D  L  V  M  I  V  T  Q  A  E  H  L  M  M  M  E  H  T   : D  A  Q  D  I  W  T  R  R  Q  T  L  T  L  *  I  D  L  L  L  T  Y  S  S  T  G  L  Q  T  H  Q  *  W  L  I  L  W  L  W  S  H  L  P  R :   F  S  R  H  Y  S  A  H  Q  *  L  M  R  T  *  F  L  L  E  K  M  Q  P  N  Q  I  K  A  R  N  I  K  Q  A  S  I  Q  M  G  C  V  Y  F  N  L  C  R  M  D  S  P  T  C  M  C  M  *  V  S  A  M  D  T  Y  I  L  F  C  C  L  V  *  F  E  E  S  K  Q  Y  E  N  E  D  L  C  Q  I  A  Y  S  Y  S  C  V  C  V  *  E  L  S  R  I  S  N  E  K  L  F  H  V </first_frame>
            <second_frame>  Q  V  I  L  E  V  D  F  D  C  L  *  M  S  S  F  F  V  V  V  L  L  L  Y  E  Y  K  E  E  C  F  Q  L  M  N  F  L  I  L  F  F  A  V  K  K  K  R  V  T  L  E  N  G  C  L  L  K  V  R  R  V  L  S  L  *  T  D  F  V  C  *  K  M  K  E  K  K  *  I  W  K  L  N  F  S  *  G  E  D  F  Q  L  M  K  R  I  F  S  E  G  E  E  F  I  C  Q  I  H  *  *  P  *  K  E  Q  N  F  R  I  S  N  G  G  N  N  L  T  L  I  Q  T  M  M  I  S  I  *  R  N  K  F  C  V  L  F  L  I  Y  S  F  *  G  S  I  L  S  S  C  L  Q  L  K  F  C  N  *  C  Y  S  L  K  M  *  L  W  M  K  F  A  L  A  M  I  I  *  C  H  I  L  V  V  N  M  P  M  K  F  L  S  Q  T  D  S  R  K  K  P  R  C  E  I  I  G  L  L  R  T  I  G  A  I  F  S  *  I  *  *  S  A  K  G  Q  R  S  S  S  F  I  *  Y  N  D  G  E  G  L  E  G  W  *  A  *  L  R  V  P  F  *  T  *  *  G  L  C  *  R  S  F  K  F  I  I  *  K  Y  *  D  I  K  *  L  L  Q  K  *  Q  Y  R  L  H  *  R  *  G  P  A  Q  *  P  H  S  G  *  Q  E  F  C  S  *  G  Q  L  A  *  L  S  S  W  S  R  F  S  G  R  *  *  S  W  F  S  *  *  *  S  *  G  *  K  *  Y  R  A  L  I  L  *  L  A  *  D  G  K  L  *  G  C  *  Q  D  V  R  :  K  L  *  F  N  I  W  S  W  S  *  Y  R  R  *  P  W  L  V  F  V  I  W  C  Y  *  R  I  W  R  W  I  E  V  R  F  G  V  C  L  L  N  I  Q  C  T  *  K  Y  L  W  N  A  G  S  F  Q  V  K  G  N  R  Q  F  N  *  *  F  W  H  *  R  S  T  L  Q  S  D  W  Q  F  N  A  I  R  G  *  I  S  R  S  E  S  S  I  F  Y  K  W  F  K  *  F  R  F  Q  D  S  A  H  K  E   : D  *  S  S  Q  N  *  L  *  A  P  E  S  I  *  G  K  K  K  T  C  L  R  G  K  W  G  D  I  Q  L  Y  *  *  P  S  R  R  E  K  P  S  Y  C  N  H  W  I  S  G  S  H  I  H  R  Y  S  A  A  Q  A  S  *  W  I  *  F  W  V  F  S  G  W  L  F  L  L  I  F  R  L  Q  S  F  R  S  D  Y  G  L  S  N  P  I  H  N  *  I  *  K  K  L  S  R  D  S  F  C  *  G  L  L  C  D  K  S  D  A  V  D  G  K  L  T  *  S  F  F  S  G  G  W  Y  R  N  K  *  K  Y  G  G  Q  A  T  S  T  F  C  N  *  A  *  K  Q  Q  G  S  *  K  C  Q  H  G  N  S  S  R  S  R  F  L  Y  C  K  G  E  L  L  H  K  F  W  V  E  *  N  F  *  G  G  R  *  F  S  S  A  *  T  C  H  G  T   : V  G  C  K  N  K  A  T  D  K  G  *  L  V  S  V  G  S  E  C  *  T  K  A  *  T  C  *  S  Q  *  W  I  W  *  *  *  S  H  K  Q  S  I  *  *  *  W  S  I  Q  :  M  H  R  I  F  G  H  G  D  R  H  *  L  Y  R  S  I  Y  C  S  L  T  L  P  Q  A  F  K  L  I  S  D  G  *  F  F  G  F  G  V  T  F  H   : D  F  R  D  I  T  Q  P  T  N  D  *  *  E  L  D  F  C  W  R  K  C  S  R  T  R  *  R  H  E  I  L  N  R  L  L  Y  K  W  V  V  F  I  S  I  Y  V  A  W  T  R  L  H  V  C  A  C  K  Y  L  L  W  I  L  I  Y  S  F  V  V  *  C  N  S  K  N  L  N  S  M  R  M  R  I  Y  V  K  *  L  T  V  T  R  V  F  V  Y  E  N  Y  Q  E  S  Q  M  R  N  Y  F  M   </second_frame>
            <third_frame>   K  *  F  W  K  L  I  L  I  V  C  K  *  V  P  S  L  L  L  F  C  C  C  M  N  I  R  R  S  A  F  S  *  *  I  F  *  F  Y  F  L  L  *  K  K  K  E  *  L  W  K  M  D  V  Y  L  R  *  E  E  F  *  A  Y  E  L  I  L  F  V  E  K  *  K  R  R  N  K  F  G  N  *  I  L  V  K  E  K  I  F  S  L  *  N  G  F  L  V  K  E  R  N  L  F  V  K  Y  I  D  S  L  K  K  S  R  T  F  V  S  L  T  V  E  I  I  L  P  *  S  K  L  *  *  F  Q  F  K  E  T  N  S  V  F  Y  F  *  F  T  H  F  K  E  A  S  S  L  V  V  Y  S  *  N  S  V  T  D  A  I  A  *  R  C  S  F  G  *  S  L  H  *  R  *  S  Y  S  A  T  S  *  L  *  T  C  Q  *  S  F  S  P  R  L  I  A  V  R  N  P  G  V  K  *  L  V  Y  *  E  P  *  E  Q  S  S  L  K  Y  N  N  Q  Q  K  G  K  E  V  P  P  L  Y  S  T  M  M  E  K  D  S  R  A  G  R  L  D  C  V  F  P  S  K  H  D  K  D  S  V  E  E  V  S  S  L  S  S  E  N  T  R  T  S  N  D  C  S  R  S  N  N  I  D  S  I  S  G  E  V  Q  P  N  N  P  I  L  D  D  K  N  S  A  V  R  D  N  L  H  S  Y  P  L  G  P  V  S  Q  A  D  D  D  L  G  F  L  D  S  N  H  E  D  K  S  S  T  E  L  L  Y  Y  N  W  P  E  M  E  N  F  E  D  V  D  R  M  F  G :   S  C  D  S  T  F  G  V  G  A  S  I  E  D  D  L  G  W  F  S  S  S  G  V  I  E  G  S  G  G  G  L  R  S  D  L  E  F  A  F  S  T  S  S  A  L  E  N  I  S  G  M  Q  E  A  S  R  S  K  E  T  G  N  S  I  N  D  S  G  T  K  D  Q  L  F  S  Q  T  G  S  S  M  P  S  E  D  E  S  A  V  L  S  H  L  S  F  T  N  G  S  S  D  S  D  F  K  I  V  P  I  K  K  :  I  N  L  H  K  I  N  S  K  L  Q  N  Q  S  E  G  K  R  K  H  V  Y  V  E  N  G  E  T  F  N  Y  I  D  S  L  P  E  E  R  N  H  P  T  A  I  T  G  S  Q  A  L  T  S  T  G  I  Q  Q  H  K  Q  V  D  G  S  D  F  G  Y  F  Q  D  G  F  S  Y  L  S  S  D  Y  S  H  S  D  Q  T  T  V  C  P  T  L  S  T  I  K  S  K  K  S  C  L  V  T  L  S  A  K  D  S  C  A  T  N  Q  M  Q  L  M  E  S  L  P  D  P  S  F  Q  V  A  G  I  G  T  N  E  N  M  V  D  K  L  L  Q  R  S  V  I  K  H  E  N  N  R  D  L  E  S  V  S  T  G  I  P  A  E  V  G  S  S  I  V  K  E  S  S  C  T  S  S  G  L  N  E  I  S  E  E  A  D  S  F  H  Q  L  E  H  V  M  E  R  :  L  D  V  R  T  K  L  R  I  R  D  S  L  Y  R  L  A  Q  S  A  E  Q  R  L  R  H  A  N  L  N  N  G  S  G  D  D  S  H  T  S  R  A  F  D  D  D  G  A  Y  R :   C  T  G  Y  L  D  T  E  T  D  T  N  S  I  D  R  S  I  A  H  L  L  F  H  R  P  S  N  S  S  V  M  A  D  S  L  A  L  E  S  P  S  T  :  I  F  E  T  L  L  S  P  P  M  I  D  E  N  L  I  S  A  G  E  N  A  A  E  P  D  K  G  T  K  Y  *  T  G  F  Y  T  N  G  L  C  L  F  Q  F  M  S  H  G  L  A  Y  M  Y  V  H  V  S  I  C  Y  G  Y  L  Y  T  L  L  L  F  S  V  I  R  R  I  *  T  V  *  E  *  G  S  M  S  N  S  L  Q  L  L  V  C  L  C  M  R  I  I  K  N  L  K  *  E  I  I  S  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44922" stop="44495"/>
                    <exon start="44394" stop="44058"/>
                    <exon start="41996" stop="41391"/>
                    <exon start="40428" stop="40280"/>
                    <exon start="40001" stop="39872"/>
                    <exon start="39787" stop="39692"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1743</number_coding_nucleotides>
                  <number_encoded_amino_acids>581</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQSSLKYNNQQKGKEVPPLYSTMMEKDSRAGRLDCVFPSKHDKDSVEEVSSLSSENTRTSNDCSRSNNIDSISGEVQPNNPILDDKNSAVRDNLHSYPLGPVSQADDDLGFLDSNHEDKSSTELLYYNWPEMENFEDVDRMFGSCDSTFGVGASIEDDLGWFSSSGVIEGSGGGLRSDLEFAFSTSSALENISGMQEASRSKETGNSINDSGTKDQLFSQTGSSMPSEDESAVLSHLSFTNGSSDSDFKIVPIKKINLHKINSKLQNQSEGKRKHVYVENGETFNYIDSLPEERNHPTAITGSQALTSTGIQQHKQVDGSDFGYFQDGFSYLSSDYSHSDQTTVCPTLSTIKSKKSCLVTLSAKDSCATNQMQLMESLPDPSFQVAGIGTNENMVDKLLQRSVIKHENNRDLESVSTGIPAEVGSSIVKESSCTSSGLNEISEEADSFHQLEHVMERLDVRTKLRIRDSLYRLAQSAEQRLRHANLNNGSGDDSHTSRAFDDDGAYRCTGYLDTETDTNSIDRSIAHLLFHRPSNSSVMADSLALESPSTIFETLLSPPMIDENLISAGENAAEPDKGTKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44311" e_stop="44058"/>
            <exon e_start="41996" e_stop="41834"/>
            <exon e_start="41609" e_stop="41391"/>
            <exon e_start="40428" e_stop="40280"/>
            <exon e_start="40001" e_stop="39992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.374" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44311" e_stop="44058" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41996" e_stop="41834" e_length="163"/>
          </exon>
          <intron i_serial="2" don_prob="0.374" acc_prob="0.747">
            <gDNA_intron_boundary i_start="41833" i_stop="41610" i_length="224"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41609" e_stop="41391" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41390" i_stop="40429" i_length="962"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40428" e_stop="40280" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40279" i_stop="40002" i_length="278"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40001" e_stop="39992" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44311" stop="44058"/>
              <exon start="41996" stop="41834"/>
              <exon start="41609" stop="41391"/>
              <exon start="40428" stop="40280"/>
              <exon start="40001" stop="39992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG : GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG : TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG : ATGCACAGGA</gDNA_template>
            <first_frame> L  E  V  D  *  G  Q  I  W  S  L  P  S  Q  H  P  V  H  L  K  I  S  L  E  C  R  K  L  P  G  Q  R  K  Q  A  I  Q  L  M  I  L  A  L  K  I  N  S  S  V  R  L  A  V  Q  C  H  Q  R  M  N  Q  P  F  *  V  I  Y  L  L  Q  M  V  Q  V  I  Q  I  S  R  *  C  P  *  R  R :   L  I  F  T  K  L  T  L  S  S  R  I  N  L  R  E  K  E  N  M  F  T  W  K  M  G  R  H  S  T  I  L  I  A  F  Q  K  R  E  T  I  L  L  Q  S  L  D  L  R  L  S  H  P  Q  :  V  A  G  I  G  T  N  E  N  M  V  D  K  L  L  Q  R  S  V  I  K  H  E  N  N  R  D  L  E  S  V  S  T  G  I  P  A  E  V  G  S  S  I  V  K  E  S  S  C  T  S  S  G  L  N  E  I  S  E  E  A  D  S  F  H  Q  L  E  H  V  M  E  R  :  L  D  V  R  T  K  L  R  I  R  D  S  L  Y  R  L  A  Q  S  A  E  Q  R  L  R  H  A  N  L  N  N  G  S  G  D  D  S  H  T  S  R  A  F  D  D  D  G  A  Y  R :   C  T  G </first_frame>
            <second_frame>  W  R  W  I  E  V  R  F  G  V  C  L  L  N  I  Q  C  T  *  K  Y  L  W  N  A  G  S  F  Q  V  K  G  N  R  Q  F  N  *  *  F  W  H  *  R  S  T  L  Q  S  D  W  Q  F  N  A  I  R  G  *  I  S  R  S  E  S  S  I  F  Y  K  W  F  K  *  F  R  F  Q  D  S  A  H  K  E   : D  *  S  S  Q  N  *  L  *  A  P  E  S  I  *  G  K  K  K  T  C  L  R  G  K  W  G  D  I  Q  L  Y  *  *  P  S  R  R  E  K  P  S  Y  C  N  H  W  I  S  G  S  H  I  H  R :   W  L  V  *  E  Q  M  K  I  W  W  T  S  Y  F  N  V  L  *  L  S  M  K  T  T  G  I  L  K  V  S  A  R  E  F  Q  Q  K  *  V  P  L  L  *  R  R  A  L  A  Q  V  L  G  *  M  K  F  L  R  R  Q  I  V  F  I  S  L  N  M  S  W  N  G :   W  M  *  E  Q  S  Y  G  *  G  I  A  C  I  G  W  L  R  V  L  N  K  G  L  D  M  L  I  S  I  M  D  L  V  M  I  V  T  Q  A  E  H  L  M  M  M  E  H  T   : D  A  Q   </second_frame>
            <third_frame>   G  G  G  L  R  S  D  L  E  F  A  F  S  T  S  S  A  L  E  N  I  S  G  M  Q  E  A  S  R  S  K  E  T  G  N  S  I  N  D  S  G  T  K  D  Q  L  F  S  Q  T  G  S  S  M  P  S  E  D  E  S  A  V  L  S  H  L  S  F  T  N  G  S  S  D  S  D  F  K  I  V  P  I  K  K  :  I  N  L  H  K  I  N  S  K  L  Q  N  Q  S  E  G  K  R  K  H  V  Y  V  E  N  G  E  T  F  N  Y  I  D  S  L  P  E  E  R  N  H  P  T  A  I  T  G  S  Q  A  L  T  S  T   : G  G  W  Y  R  N  K  *  K  Y  G  G  Q  A  T  S  T  F  C  N  *  A  *  K  Q  Q  G  S  *  K  C  Q  H  G  N  S  S  R  S  R  F  L  Y  C  K  G  E  L  L  H  K  F  W  V  E  *  N  F  *  G  G  R  *  F  S  S  A  *  T  C  H  G  T   : V  G  C  K  N  K  A  T  D  K  G  *  L  V  S  V  G  S  E  C  *  T  K  A  *  T  C  *  S  Q  *  W  I  W  *  *  *  S  H  K  Q  S  I  *  *  *  W  S  I  Q  :  M  H  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44062" stop="44058"/>
                    <exon start="41996" stop="41834"/>
                    <exon start="41609" stop="41391"/>
                    <exon start="40428" stop="40280"/>
                    <exon start="40001" stop="39992"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLIFTKLTLSSRINLREKENMFTWKMGRHSTILIAFQKRETILLQSLDLRLSHPQVAGIGTNENMVDKLLQRSVIKHENNRDLESVSTGIPAEVGSSIVKESSCTSSGLNEISEEADSFHQLEHVMERLDVRTKLRIRDSLYRLAQSAEQRLRHANLNNGSGDDSHTSRAFDDDGAYRCTG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="55577" PGL_stop="51940"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55577" e_stop="55434"/>
            <exon e_start="53627" e_stop="53417"/>
            <exon e_start="52295" e_stop="52170"/>
            <exon e_start="52092" e_stop="51940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.927" e_score="0.993"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.812" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="55577" e_stop="55434" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.927">
            <gDNA_intron_boundary i_start="55433" i_stop="53628" i_length="1806"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53627" e_stop="53417" e_length="211"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53416" i_stop="52296" i_length="1121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52295" e_stop="52170" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.812" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52169" i_stop="52093" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52092" e_stop="51940" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55577" stop="55434"/>
              <exon start="53627" stop="53417"/>
              <exon start="52295" stop="52170"/>
              <exon start="52092" stop="51940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330601" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCGCTCTCTCTTCACTTTGCCCCTTCATTTTTTTTCCTTTCTGAATCCTTCATATCAATTGCCGATTACGCCATGGAAGAAGGTTCATCGCGACGTGCCAAACGTCCCTTCGTTGAGGACGATGACTCCAATAAAGCTCCAGA : GCAGAAGCGTGTAAGGTTCCCAAAGGGTAAGAAGGCAAAGCAGGGCGATACCACGATTGATGGGTGTGAAGATAAACCTAGTGGGCGGACAGATCCTCGCAATGCAGCCAAAGAGCGTTCGGCACGGCGGAATCAAATAACAGCGGAACTCCTTGATGAAGAAAACGAAGGTGAAATAGCTGACATATCGCGGGCAGAAGTGGAATATGAG : GAAAATGAAACATTCATTGATGATGGGATTGCAATAGAACCTTTTAATCTGAATAAAGAGAGAGAAGAAGGTTATTTTGATGCATCAGGAAACTATGTTGAATATTTAAATGAAAATGAGATAAAG : GATGCATGGCTTGATAGTGTTGATACTGAGAAAACATATTCTGGGAAGAAAGCTATCAAGATATCAAATGAAGATGAGATTCAAGACCTTACATCAGAACAACTAGGAAAGATGAAGAGGCGAATTGCTGATGTGCTCGAACCAGGAGAAACA</gDNA_template>
            <first_frame> T  A  L  S  S  L  C  P  F  I  F  F  P  F  *  I  L  H  I  N  C  R  L  R  H  G  R  R  F  I  A  T  C  Q  T  S  L  R  *  G  R  *  L  Q  *  S  S  R  :  A  E  A  C  K  V  P  K  G  *  E  G  K  A  G  R  Y  H  D  *  W  V  *  R  *  T  *  W  A  D  R  S  S  Q  C  S  Q  R  A  F  G  T  A  E  S  N  N  S  G  T  P  *  *  R  K  R  R  *  N  S  *  H  I  A  G  R  S  G  I  *   : G  K  *  N  I  H  *  *  W  D  C  N  R  T  F  *  S  E  *  R  E  R  R  R  L  F  *  C  I  R  K  L  C  *  I  F  K  *  K  *  D  K   : G  C  M  A  *  *  C  *  Y  *  E  N  I  F  W  E  E  S  Y  Q  D  I  K  *  R  *  D  S  R  P  Y  I  R  T  T  R  K  D  E  E  A  N  C  *  C  A  R  T  R  R  N  </first_frame>
            <second_frame>  P  L  S  L  H  F  A  P  S  F  F  F  L  S  E  S  F  I  S  I  A  D  Y  A  M  E  E  G  S  S  R  R  A  K  R  P  F  V  E  D  D  D  S  N  K  A  P  E :   Q  K  R  V  R  F  P  K  G  K  K  A  K  Q  G  D  T  T  I  D  G  C  E  D  K  P  S  G  R  T  D  P  R  N  A  A  K  E  R  S  A  R  R  N  Q  I  T  A  E  L  L  D  E  E  N  E  G  E  I  A  D  I  S  R  A  E  V  E  Y  E  :  E  N  E  T  F  I  D  D  G  I  A  I  E  P  F  N  L  N  K  E  R  E  E  G  Y  F  D  A  S  G  N  Y  V  E  Y  L  N  E  N  E  I  K  :  D  A  W  L  D  S  V  D  T  E  K  T  Y  S  G  K  K  A  I  K  I  S  N  E  D  E  I  Q  D  L  T  S  E  Q  L  G  K  M  K  R  R  I  A  D  V  L  E  P  G  E  T </second_frame>
            <third_frame>   R  S  L  F  T  L  P  L  H  F  F  S  F  L  N  P  S  Y  Q  L  P  I  T  P  W  K  K  V  H  R  D  V  P  N  V  P  S  L  R  T  M  T  P  I  K  L  Q   : S  R  S  V  *  G  S  Q  R  V  R  R  Q  S  R  A  I  P  R  L  M  G  V  K  I  N  L  V  G  G  Q  I  L  A  M  Q  P  K  S  V  R  H  G  G  I  K  *  Q  R  N  S  L  M  K  K  T  K  V  K  *  L  T  Y  R  G  Q  K  W  N  M  R :   K  M  K  H  S  L  M  M  G  L  Q  *  N  L  L  I  *  I  K  R  E  K  K  V  I  L  M  H  Q  E  T  M  L  N  I  *  M  K  M  R  *  R :   M  H  G  L  I  V  L  I  L  R  K  H  I  L  G  R  K  L  S  R  Y  Q  M  K  M  R  F  K  T  L  H  Q  N  N  *  E  R  *  R  G  E  L  L  M  C  S  N  Q  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55576" stop="55434"/>
                    <exon start="53627" stop="53417"/>
                    <exon start="52295" stop="52170"/>
                    <exon start="52092" stop="51940"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLSLHFAPSFFFLSESFISIADYAMEEGSSRRAKRPFVEDDDSNKAPEQKRVRFPKGKKAKQGDTTIDGCEDKPSGRTDPRNAAKERSARRNQITAELLDEENEGEIADISRAEVEYEENETFIDDGIAIEPFNLNKEREEGYFDASGNYVEYLNENEIKDAWLDSVDTEKTYSGKKAIKISNEDEIQDLTSEQLGKMKRRIADVLEPGET</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="81959" PGL_stop="79239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81948" e_stop="81416"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="81948" e_stop="81416" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81948" stop="81416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81947" stop="81500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335512" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGT</gDNA_template>
            <first_frame> E  N  A  E  V  L  F  I  C  D  R  *  T  M  V  F  F  I  Q  Q  *  *  N  C  G  F  S  A  L  *  K  I  T  G  S  G  T  Q  N  R  S  Y  C  I  C  F  S  R  I  F  V  S  F  F  F  F  S  V  Q  L  L  H  E  I  E  V  *  S  I  P  F  V  I  Q  L  Q  *  F  T  F  R  A  I  I  A  G  S  Y  N  R  M  I  K  T  F  T  S  V  D  F  F  F  R  F  S  E  T  V  L  V  N  *  G  L  R  G  T  L  I  C  L  L  E  K  N  S  A  K  K  Q  *  F  Y  A  L  V  R  S  N  Y  E  S  S  L  F  C  K  F  D  E  V  N  L  R  K  K  I  V  S  F  V  Q  N  F  A  V  V  S  N  A  *  E  I  M  C  N  E   </first_frame>
            <second_frame>  K  M  Q  R  C  C  S  S  A  I  G  K  R  W  F  S  S  F  N  N  D  K  I  V  A  S  V  L  F  E  R  L  P  V  V  V  P  K  I  D  P  T  V  Y  A  F  Q  E  F  S  *  V  F  S  F  F  L  F  N  C  C  T  K  S  K  C  N  Q  S  L  L  *  S  N  Y  N  D  L  L  L  E  R  *  L  L  V  R  I  I  E  *  S  K  H  L  L  V  L  I  F  F  F  A  F  Q  K  L  C  W  L  I  R  D  *  G  V  L  *  Y  V  C  L  R  K  I  V  L  K  N  N  N  F  M  P  *  S  G  Q  I  M  N  L  R  Y  F  V  S  L  M  K  *  I  Y  E  R  K  *  F  L  L  S  K  I  L  Q  W  F  L  M  L  R  R  *  C  V  M  K  </second_frame>
            <third_frame>   K  C  R  G  A  V  H  L  R  *  V  N  D  G  F  L  H  S  T  M  I  K  L  W  L  Q  C  S  L  K  D  Y  R  *  W  Y  P  K  S  I  L  L  Y  M  L  F  K  N  F  R  K  F  F  L  F  F  C  S  I  V  A  R  N  R  S  V  I  N  P  F  C  N  P  I  T  M  I  Y  F  *  S  D  N  C  W  F  V  *  *  N  D  Q  N  I  Y  *  C  *  F  F  F  S  L  F  R  N  C  A  G  *  L  G  I  K  G  Y  F  D  M  F  A  *  E  K  *  C  *  K  T  I  I  L  C  L  S  Q  V  K  L  *  I  F  A  I  L  *  V  *  *  S  K  S  T  K  E  N  S  F  F  C  P  K  F  C  S  G  F  *  C  L  G  D  N  V  *  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0127L14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81959" e_stop="81799"/>
            <exon e_start="81255" e_stop="81190"/>
            <exon e_start="80771" e_stop="80697"/>
            <exon e_start="80247" e_stop="80124"/>
            <exon e_start="80037" e_stop="79915"/>
            <exon e_start="79761" e_stop="79239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.908" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.750" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.620" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81959" e_stop="81799" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.908" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81255" e_stop="81190" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.750" acc_prob="0.977">
            <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80771" e_stop="80697" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.620">
            <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80247" e_stop="80124" e_length="124"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.950">
            <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80037" e_stop="79915" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79761" e_stop="79239" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81959" stop="81799"/>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79915"/>
              <exon start="79761" stop="79239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316159" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC : GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG : GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG : GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG : TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG : CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTTTCATAGCTGCATTGT</gDNA_template>
            <first_frame> L  G  F  M  K  M  Q  R  C  C  S  S  A  I  G  K  R  W  F  S  S  F  N  N  D  K  I  V  A  S  V  L  F  E  R  L  P  V  V  V  P  K  I  D  P  T  V  Y  A  F  Q  E  F  S :   F  R  W  R  Q  Q  Y  R  R  E  Y  P  E  S  F  L  K  K  S  D  T  R :   G  K  G  D  Y  Q  I  D  Y  K  P  A  P  R  I  S  E  A  D  K  T  N  D  Q  R :   S  L  Q  R  A  L  D  K  R  L  Y  L  L  V  H  G  T  T  Q  G  S  G  K  P  V  W  H  F  P  E  K  V  Y  E  S  E  E  N  L  R  K  :  C  A  E  S  A  L  E  S  F  I  G  D  L  S  H  T  Y  F  V  G  N  A  P  M  G  H  M  V  M  Q  P  T  E  D  K  K  I  P  S  I  K  :  R  F  F  F  K  S  Q  V  I  A  A  N  K  F  D  I  R  K  C  D  D  F  V  W  V  T  K  D  E  L  L  E  Y  F  P  E  Q  A  E  F  L  N  K  M  I  I  S  *  R  *  F  L  L  K  L  Q  A  S  *  D  S  G  N  S  F  D  L  K  N  P  F  L  P  A  N  A  M  G  L  D  C  W  R  L  I  F  M  S  R  Q  S  D  *  H  A  I  H  Q  V  L  *  N  F  E  H  R  I  P  K  L  *  *  P  S  A  S  A  I  T  N  P  L  C  E  K  L  C  *  K  L  *  N  S  H  E  F  *  Y  E  Y  A  F  V  D  A  R  F  H  L  A  S  *  N  K  Q  N  K  L  H  V  A  A  L  T  S  C  E  L  C  F  I  A  A  L  </first_frame>
            <second_frame>  *  G  L  *  K  C  R  G  A  V  H  L  R  *  V  N  D  G  F  L  H  S  T  M  I  K  L  W  L  Q  C  S  L  K  D  Y  R  *  W  Y  P  K  S  I  L  L  Y  M  L  F  K  N  F   : R  F  V  G  G  S  N  I  G  E  S  I  Q  K  V  F  *  R  S  L  I  P   : G  E  K  V  I  I  K  L  I  I  N  Q  L  L  E  S  Q  K  Q  I  R  L  M  I  K   : G  H  Y  S  E  H  *  T  R  D  S  I  F  *  S  M  V  P  H  K  V  V  E  S  L  S  G  I  S  L  K  K  F  M  S  L  K  R  I  C  A  S :   V  L  S  L  P  *  N  L  S  L  E  I  F  H  I  H  I  L  L  E  M  P  L  W  V  I  W  S  C  N  P  L  K  T  R  K  S  L  Q  S  S :   A  S  S  S  N  P  K  L  L  Q  P  T  N  L  I  L  G  N  V  M  I  L  S  G  *  P  K  M  N  C  W  N  T  F  P  S  K  L  N  S  *  T  R  *  S  S  A  D  V  S  F  C  S  N  F  R  L  R  R  I  A  E  I  V  L  I  *  K  I  H  F  F  P  Q  M  Q  W  A  W  T  A  G  D  *  F  L  C  L  D  S  L  T  S  M  P  F  I  K  S  C  R  I  L  N  I  G  Y  L  N  Y  D  S  L  L  P  Q  L  S  P  I  L  F  V  R  S  Y  A  K  N  S  E  I  V  M  N  F  S  M  N  M  L  L  *  M  H  D  F  I  S  R  H  K  I  N  K  T  N  Y  M  L  Q  P  *  R  V  A  S  F  V  S  *  L  H  C </second_frame>
            <third_frame>   R  V  Y  E  N  A  E  V  L  F  I  C  D  R  *  T  M  V  F  F  I  Q  Q  *  *  N  C  G  F  S  A  L  *  K  I  T  G  S  G  T  Q  N  R  S  Y  C  I  C  F  S  R  I  F  :  V  S  L  E  A  A  I  S  A  R  V  S  R  K  F  S  E  E  V  *  Y  Q  :  G  K  R  *  L  S  N  *  L  *  T  S  S  S  N  L  R  S  R  *  D  *  *  S  K  :  V  I  T  A  S  T  R  Q  E  T  L  S  S  S  P  W  Y  H  T  R  *  W  K  A  C  L  A  F  P  *  K  S  L  *  V  *  R  E  F  A  Q   : V  C  *  V  C  L  R  I  F  H  W  R  S  F  T  Y  I  F  C  W  K  C  P  Y  G  S  Y  G  H  A  T  H  *  R  Q  E  N  P  F  N  Q   : A  L  L  L  Q  I  P  S  Y  C  S  Q  Q  I  *  Y  *  E  M  *  *  F  C  L  G  D  Q  R  *  T  V  G  I  L  S  R  A  S  *  I  P  E  Q  D  D  H  Q  L  T  L  V  S  A  Q  T  S  G  F  V  G  *  R  K  *  F  *  S  E  K  S  I  S  S  R  K  C  N  G  L  G  L  L  E  T  D  F  Y  V  S  T  V  *  L  A  C  H  S  S  S  P  V  E  F  *  T  *  D  T  *  I  M  I  A  F  C  L  S  Y  H  Q  S  S  L  *  E  A  M  L  K  T  L  K  *  S  *  I  L  V  *  I  C  F  C  R  C  T  I  S  S  R  V  I  K  *  T  K  Q  I  T  C  C  S  L  N  E  L  R  A  L  F  H  S  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81959" stop="81799"/>
                    <exon start="81255" stop="81190"/>
                    <exon start="80771" stop="80697"/>
                    <exon start="80247" stop="80124"/>
                    <exon start="80037" stop="79915"/>
                    <exon start="79761" stop="79618"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGFMKMQRCCSSAIGKRWFSSFNNDKIVASVLFERLPVVVPKIDPTVYAFQEFSFRWRQQYRREYPESFLKKSDTRGKGDYQIDYKPAPRISEADKTNDQRSLQRALDKRLYLLVHGTTQGSGKPVWHFPEKVYESEENLRKCAESALESFIGDLSHTYFVGNAPMGHMVMQPTEDKKIPSIKRFFFKSQVIAANKFDIRKCDDFVWVTKDELLEYFPEQAEFLNKMIIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="84949" PGL_stop="84225"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84949" e_stop="84225"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="84949" e_stop="84225" e_length="725"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84949" stop="84225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTTTGCCAGACATCATCAACCACCACAAGGTATTTGCGTTCTTTCAATAGATCACGAAGGTGGTTTTCTAGATCTCTTTCATCCATCTTTTCCAACAATCCTAGAGTTCCCATGGTGCGACCTTGGATGGATTTTATGATAGTCTTAAGAAGATCCATTGTGTTGTACTCTTGAGAAACACATATCCAAGCGTGTGTAGGGAAGCGAGAGGATATATTAGGATTTTTGTAGAGGTTTCTTGCAAGAGTGGTCTTGC</gDNA_template>
            <first_frame> C  V  F  S  L  D  H  S  I  F  W  K  H  T  K  V  E  K  T  L  L  E  L  N  *  Q  I  I  V  A  *  *  *  Y  V  G  D  F  N  R  F  I  F  F  N  A  L  P  K  V  I  F  H  L  L  P  F  I  *  I  L  F  M  R  K  *  S  A  Q  Y  N  N  C  K  R  *  T  S  T  L  F  H  H  I  L  S  *  T  F  H  F  C  N  H  C  S  N  I  K  *  F  P  K  K  E  I  P  T  F  F  L  T  *  E  T  K  F  M  N  K  T  S  V  G  C  S  F  S  D  I  L  F  A  R  G  N  N  D  S  A  A  I  L  V  I  R  E  C  S  F  Q  T  L  P  C  F  S  L  P  D  I  I  N  H  H  K  V  F  A  F  F  Q  *  I  T  K  V  V  F  *  I  S  F  I  H  L  F  Q  Q  S  *  S  S  H  G  A  T  L  D  G  F  Y  D  S  L  K  K  I  H  C  V  V  L  L  R  N  T  Y  P  S  V  C  R  E  A  R  G  Y  I  R  I  F  V  E  V  S  C  K  S  G  L   </first_frame>
            <second_frame>  V  F  S  A  L  T  T  R  S  S  G  N  I  P  K  *  R  K  H  C  L  S  S  I  D  K  S  L  *  L  S  D  S  M  L  E  I  S  T  D  L  S  S  L  M  L  F  Q  R  *  S  F  T  F  C  H  S  S  R  S  F  L  C  E  S  S  P  L  N  T  T  I  A  R  G  K  P  L  H  F  S  T  I  S  L  A  R  L  S  I  S  A  T  I  A  R  T  S  S  S  F  L  R  K  R  S  Q  L  S  S  *  L  R  K  R  S  L  *  T  K  P  L  S  A  A  L  S  A  I  S  S  L  R  V  V  I  M  T  L  L  P  F  L  S  S  G  N  A  L  F  K  L  S  H  A  S  L  C  Q  T  S  S  T  T  T  R  Y  L  R  S  F  N  R  S  R  R  W  F  S  R  S  L  S  S  I  F  S  N  N  P  R  V  P  M  V  R  P  W  M  D  F  M  I  V  L  R  R  S  I  V  L  Y  S  *  E  T  H  I  Q  A  C  V  G  K  R  E  D  I  L  G  F  L  *  R  F  L  A  R  V  V  L  </second_frame>
            <third_frame>   C  F  Q  P  *  P  L  D  L  L  E  T  Y  Q  S  R  E  N  T  A  *  A  Q  L  T  N  H  C  S  L  V  I  V  C  W  R  F  Q  Q  I  Y  L  L  *  C  S  S  K  G  D  L  S  P  F  A  I  H  L  D  P  F  Y  A  K  V  V  R  S  I  Q  Q  L  Q  E  V  N  L  Y  T  F  P  P  Y  P  *  L  D  F  P  F  L  Q  P  L  L  E  H  Q  V  V  S  *  E  R  D  P  N  F  L  L  D  L  G  N  E  V  Y  E  Q  N  L  C  R  L  L  F  Q  R  Y  P  L  C  A  W  *  *  *  L  C  C  H  S  C  H  P  G  M  L  F  S  N  S  P  M  L  L  F  A  R  H  H  Q  P  P  Q  G  I  C  V  L  S  I  D  H  E  G  G  F  L  D  L  F  H  P  S  F  P  T  I  L  E  F  P  W  C  D  L  G  W  I  L  *  *  S  *  E  D  P  L  C  C  T  L  E  K  H  I  S  K  R  V  *  G  S  E  R  I  Y  *  D  F  C  R  G  F  L  Q  E  W  S  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84594" stop="84307"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKPLSAALSAISSLRVVIMTLLPFLSSGNALFKLSHASLCQTSSTTTRYLRSFNRSRRWFSRSLSSIFSNNPRVPMVRPWMDFMIVLRRSIVLYS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="96852" PGL_stop="93455"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96852" e_stop="96818"/>
            <exon e_start="94115" e_stop="93455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96852" e_stop="96818" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.947">
            <gDNA_intron_boundary i_start="96817" i_stop="94116" i_length="2702"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94115" e_stop="93455" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96852" stop="96818"/>
              <exon start="94115" stop="93455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCGCCGATAATCAGTGGATTTTCACCTATTTGAG : GGTGTACTTTGAGGAAGGTGAATGCTCAAATTCGTCATTCTTTTTAGTGGAAAAATACATCTCGAGATGATGGAAATTGAAATTGCGTCCCTTTACCACTACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAACGAAGAATTCCAAGACTGAGAGAGTTGCTGAGATGGA</gDNA_template>
            <first_frame> V  A  D  N  Q  W  I  F  T  Y  L  R :   V  Y  F  E  E  G  E  C  S  N  S  S  F  F  L  V  E  K  Y  I  S  R  *  W  K  L  K  L  R  P  F  T  T  T  Y  K  L  V  K  L  I  L  S  C  F  R  Y  N  F  *  L  E  Y  S  E  C  P  P  F  S  R  L  S  S  F  Y  S  T  R  N  S  S  A  R  V  V  L  Q  K  K  S  N  Q  N  N  G  *  S  G  C  S  *  Q  G  W  N  K  E  V  A  S  V  D  V  C  Y  I  C  C  *  S  S  K  G  K  S  Q  N  *  *  S  R  Q  *  *  Y  Y  R  E  G  D  C  H  S  E  T  E  K  *  K  D  *  G  *  K  G  N  I  H  *  G  V  V  H  S  A  S  N  M  P  N  N  K  K  K  Q  K  K  I  K  P  T  K  *  L  L  *  *  *  K  H  F  N  G  E  *  M  *  Q  Q  A  S  K  W  *  W  R  G  S  Y  V  E  E  T  E  T  E  N  E  E  F  Q  D  *  E  S  C  *  D  G </first_frame>
            <second_frame>  S  P  I  I  S  G  F  S  P  I  *   : G  C  T  L  R  K  V  N  A  Q  I  R  H  S  F  *  W  K  N  T  S  R  D  D  G  N  *  N  C  V  P  L  P  L  R  I  S  W  S  S  *  F  *  V  V  F  G  T  T  F  S  L  N  I  L  S  V  L  L  S  L  D  *  V  A  F  T  L  Q  E  I  H  L  L  E  *  F  C  K  R  K  A  I  K  I  M  D  D  R  V  V  L  D  K  G  G  T  R  K  L  P  Q  W  M  F  A  T  S  A  A  D  Q  V  K  E  K  A  K  T  D  K  V  D  N  N  N  T  T  E  K  E  I  V  T  Q  K  Q  K  N  R  R  I  K  D  K  K  E  T  F  T  E  E  S  S  T  Q  L  P  I  C  Q  T  T  K  R  S  R  R  K  L  N  L  P  N  D  Y  C  N  D  E  S  T  S  M  G  S  E  C  D  S  K  Q  A  S  G  D  G  E  V  P  M  L  R  R  Q  K  Q  K  T  K  N  S  K  T  E  R  V  A  E  M   </second_frame>
            <third_frame>   R  R  *  S  V  D  F  H  L  F  E  :  G  V  L  *  G  R  *  M  L  K  F  V  I  L  F  S  G  K  I  H  L  E  M  M  E  I  E  I  A  S  L  Y  H  Y  V  *  A  G  Q  A  D  F  E  L  F  S  V  Q  L  L  A  *  I  F  *  V  S  S  F  L  S  T  E  *  L  L  L  Y  K  K  F  I  C  *  S  S  S  A  K  E  K  Q  S  K  *  W  M  I  G  L  F  L  T  R  V  E  Q  G  S  C  L  S  G  C  L  L  H  L  L  L  I  K  *  R  K  K  P  K  L  I  K  *  T  I  I  I  L  Q  R  R  R  L  S  L  R  N  R  K  I  E  G  L  R  I  K  R  K  H  S  L  R  S  R  P  L  S  F  Q  Y  A  K  Q  Q  K  E  A  E  E  N  *  T  Y  Q  M  I  I  V  M  M  K  A  L  Q  W  G  V  N  V  T  A  S  K  Q  V  V  M  E  R  F  L  C  *  G  D  R  N  R  K  R  R  I  P  R  L  R  E  L  L  R  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93888" stop="93457"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCKRKAIKIMDDRVVLDKGGTRKLPQWMFATSAADQVKEKAKTDKVDNNNTTEKEIVTQKQKNRRIKDKKETFTEESSTQLPICQTTKRSRRKLNLPNDYCNDESTSMGSECDSKQASGDGEVPMLRRQKQKTKNSKTERVAEM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="99970" PGL_stop="104408"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99970" e_stop="100517"/>
            <exon e_start="104156" e_stop="104408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99970" e_stop="100517" e_length="548"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100518" i_stop="104155" i_length="3638"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104156" e_stop="104408" e_length="253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99970" stop="100517"/>
              <exon start="104156" stop="104408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTTATCGAGGGGGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAG : GTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTAGGTTTCATCTCTTAAAACATAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCATCAATCGCGAATTTTGCGGATTGTTTTAGTCCTTGTGCAGTTGATCTG</gDNA_template>
            <first_frame> S  L  S  R  G  V  T  G  V  V  V  S  K  C  R  R  I  M  G  T  I  S  L  D  R  G  L  S  N  *  S  R  I  W  Q  K  M  I  Q  T  D  M  G  L  L  R  R  R  E  Q  R  W  R  G  S  L  P  S  K  L  M  R  N  *  C  V  L  N  W  H  S  V  L  F  V  R  M  I  L  R  W  G  Q  M  *  Y  R  C  L  V  S  M  F  I  I  R  I  V  S  Y  R  G  L  S  C  T  V  L  A  R  F  V  A  M  S  C  Q  R  M  S  L  R  M  R  T  G  K  E  T  M  M  G  T  R  A  G  M  V  L  L  L  E  V  G  D  Q  G  E  G  L  L  Q  Y  H  C  H  G  L  W  E  A  L  E  H  H  L  A  R  D  D  P  S  L  V  G  S  G  T  G  S  L  I  R :   W  Y  P  C  L  Q  V  V  S  W  M  T  K  L  E  E  L  L  G  R  *  L  E  N  A  T  K  V  K  D  *  V  S  S  L  K  T  *  I  Q  G  L  H  K  P  Q  I  V  L  Q  D  V  C  L  N  V  L  H  Q  M  S  K  V  F  I  Y  A  S  S  I  A  N  F  A  D  C  F  S  P  C  A  V  D  L </first_frame>
            <second_frame>  R  Y  R  G  G  *  R  G  *  W  S  P  N  A  G  E  L  W  G  L  F  H  W  T  G  V  *  A  I  D  P  E  F  G  R  K  *  S  K  P  I  W  D  S  S  G  V  E  S  S  G  G  G  A  P  Y  H  Q  S  *  *  G  I  D  A  F  *  T  G  T  V  C  C  L  *  G  *  F  *  D  G  V  R  C  D  T  D  A  L  *  A  C  L  S  *  G  L  Y  H  T  V  A  *  V  A  Q  F  L  P  G  L  S  L  *  V  A  N  G  *  A  *  E  *  E  Q  A  K  R  Q  *  W  G  L  E  R  G  W  F  C  F  W  K  W  G  I  R  E  K  V  Y  Y  N  I  I  A  M  A  F  G  K  L  W  S  I  I  *  P  G  M  I  R  V  S  W  A  A  E  Q  G  V  *  L   : G  G  I  L  A  C  R  L  Y  H  G  *  Q  S  W  R  S  C  W  V  D  N  *  K  M  L  Q  R  *  R  I  R  F  H  L  L  K  H  R  Y  R  V  Y  T  N  P  R  *  Y  C  K  M  F  V  *  M  F  C  I  R  C  P  K  F  S  F  M  L  H  Q  S  R  I  L  R  I  V  L  V  L  V  Q  L  I   </second_frame>
            <third_frame>   V  I  E  G  G  N  G  G  S  G  L  Q  M  P  A  N  Y  G  D  Y  F  I  G  P  G  F  E  Q  L  I  Q  N  L  A  E  N  D  P  N  R  Y  G  T  P  P  A  S  R  A  A  V  E  G  L  P  T  I  K  V  D  E  E  L  M  R  S  E  L  A  Q  C  A  V  C  K  D  D  F  E  M  G  S  D  V  I  Q  M  P  C  K  H  V  Y  H  K  D  C  I  I  P  W  L  E  L  H  S  S  C  P  V  C  R  Y  E  L  P  T  D  E  P  E  N  E  N  R  Q  R  D  N  D  G  D  S  S  G  D  G  S  A  S  G  S  G  G  S  G  R  R  F  T  T  I  S  L  P  W  P  L  G  S  F  G  A  S  S  S  Q  G  *  S  E  S  R  G  Q  R  N  R  E  S  N  *  :  V  V  S  L  L  A  G  C  I  M  D  D  K  V  G  G  V  V  G  *  I  I  R  K  C  Y  K  G  K  G  L  G  F  I  S  *  N  I  D  T  G  S  T  Q  T  P  D  S  I  A  R  C  L  S  E  C  F  A  S  D  V  Q  S  F  H  L  C  F  I  N  R  E  F  C  G  L  F  *  S  L  C  S  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99972" stop="100478"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIEGGNGGSGLQMPANYGDYFIGPGFEQLIQNLAENDPNRYGTPPASRAAVEGLPTIKVDEELMRSELAQCAVCKDDFEMGSDVIQMPCKHVYHKDCIIPWLELHSSCPVCRYELPTDEPENENRQRDNDGDSSGDGSASGSGGSGRRFTTISLPWPLGSFGASSSQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="115217" PGL_stop="115960"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115217" e_stop="115960"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="115217" e_stop="115960" e_length="744"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115217" stop="115960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTACATATTTGTTGTTTTGGGGCTCTGTTTTTTTTTTTTTTGCTTCCATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTAAAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTGTTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATGCCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCTTCAATTATAGCTGCTACTGGTACTGGTACTATTCCTGCTAGTTTCTCGACTGTATC</gDNA_template>
            <first_frame> F  L  H  I  C  C  F  G  A  L  F  F  F  F  L  L  P  *  I  E  L  F  L  L  L  E  T  S  T  E  P  A  L  L  I  C  K  S  F  F  S  S  F  V  W  G  F  V  *  L  S  S  V  F  Q  S  L  V  N  L  L  F  F  F  F  V  G  V  C  S  I  Q  L  I  N  P  I  L  V  L  Y  L  D  L  I  F  N  Y  L  L  F  F  I  C  W  G  L  L  N  S  A  H  N  S  R  I  S  T  L  F  W  I  *  F  S  I  I  V  G  F  C  L  L  I  N  P  S  N  F  P  P  L  P  F  L  L  L  V  F  *  A  S  N  V  D  V  C  R  G  K  W  S  Y  N  *  S  S  E  A  T  T  T  G  A  Y  W  G  W  Y  K  W  C  F  N  S  E  K  T  A  G  K  R  P  A  *  *  G  *  W  *  R  K  T  Y  K  D  A  N  C  M  C  G  K  S  F  S  A  Y  S  *  I  G  S  *  I  R  W  T  N  Y  *  M  A  A  S  S  S  *  A  F  N  Y  S  C  Y  W  Y  W  Y  Y  S  C  *  F  L  D  C  I </first_frame>
            <second_frame>  F  Y  I  F  V  V  L  G  L  C  F  F  F  F  C  F  H  E  S  S  F  F  Y  Y  L  K  L  Q  L  N  L  L  Y  *  F  V  K  V  F  F  L  L  L  F  G  V  L  F  N  *  A  L  F  S  R  A  W  *  I  C  C  F  S  S  L  L  G  F  A  Q  F  S  S  *  I  P  Y  W  C  S  I  W  T  *  F  S  I  I  C  C  F  L  F  V  G  V  C  S  I  Q  L  T  I  P  V  L  V  L  Y  F  G  F  D  F  R  L  L  L  G  F  V  C  *  *  I  L  V  I  F  H  H  Y  R  F  C  C  *  C  F  E  L  L  M  S  T  S  A  E  G  N  G  A  I  I  D  P  Q  R  Q  Q  Q  Q  A  P  T  G  V  G  T  N  G  A  L  T  V  K  K  P  P  V  K  D  R  H  S  K  V  D  G  R  G  R  R  I  R  M  P  I  V  C  A  A  R  V  F  Q  L  T  R  E  L  G  H  K  S  D  G  Q  T  I  E  W  L  L  R  Q  A  E  P  S  I  I  A  A  T  G  T  G  T  I  P  A  S  F  S  T  V   </second_frame>
            <third_frame>   F  T  Y  L  L  F  W  G  S  V  F  F  F  F  A  S  M  N  R  A  F  S  I  T  *  N  F  N  *  T  C  F  I  D  L  *  K  F  F  F  F  F  C  L  G  F  C  L  I  E  L  C  F  P  E  L  G  E  F  V  V  F  L  L  C  W  G  L  L  N  S  A  H  K  S  H  I  G  A  L  F  G  P  D  F  Q  L  F  V  V  F  Y  L  L  G  F  A  Q  F  S  S  Q  F  P  Y  *  Y  S  I  L  D  L  I  F  D  Y  C  W  V  L  F  V  D  K  S  *  *  F  S  T  T  T  V  F  A  A  S  V  L  S  F  *  C  R  R  L  Q  R  E  M  E  L  *  L  I  L  R  G  N  N  N  R  R  L  L  G  L  V  Q  M  V  L  *  Q  *  K  N  R  R  *  K  T  G  I  V  R  L  M  V  E  E  D  V  *  G  C  Q  L  Y  V  R  Q  E  F  F  S  L  L  V  N  W  V  I  N  P  M  D  K  L  L  N  G  C  F  V  K  L  S  L  Q  L  *  L  L  L  V  L  V  L  F  L  L  V  S  R  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115629" stop="115958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFELLMSTSAEGNGAIIDPQRQQQQAPTGVGTNGALTVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFSTV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115327" stop="115536"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFFFFFCLGFCLIELCFPELGEFVVFLLCWGLLNSAHKSHIGALFGPDFQLFVVFYLLGFAQFSSQFPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="116138" PGL_stop="116969"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116138" e_stop="116969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="116138" e_stop="116969" e_length="832"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116138" stop="116969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322624" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTGCTGTGGGTCCCACAGCTGGGTTTTGGGCTGTTCCAGCTAGGCCTGATTTTGGTCAAATTTGGAGCTTTGCGGCGGCACCGCCACCTGAAATGATGGTGCCAACCTCCGCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCAGTTGTGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTATTACT</gDNA_template>
            <first_frame> Y  C  C  G  S  H  S  W  V  L  G  C  S  S  *  A  *  F  W  S  N  L  E  L  C  G  G  T  A  T  *  N  D  G  A  N  L  R  G  C  S  S  C  S  R  G  S  V  K  F  A  E  F  *  I  L  S  A  A  D  G  *  G  F  S  C  *  S  W  E  L  L  T  N  D  S  R  A  S  Q  F  A  S  F  S  I  R  S  S  T  A  L  F  R  E  K  R  R  R  R  T  L  K  I  *  L  L  L  L  L  L  L  S  L  L  L  L  I  Y  R  I  N  V  F  *  C  S  C  L  C  *  M  R  N  L  L  L  G  S  S  E  *  E  M  N  *  G  L  V  Q  F  H  E  L  L  L  G  L  G  L  F  A  I  S  H  L  S  R  V  Y  V  H  R  V  L  V  L  *  A  V  G  R  *  H  E  T  Q  A  S  G  E  V  V  A  C  D  D  E  F  G  G  V  C  S  V  V  C  R  P  H  N  K  L  L  *  S  H  C  N  K  I  *  *  G  I  S  V  D  Y  E  N  L  *  F  H  M  N  V  L  *  G  N  H  G  G  F  R  *  I  Q  F  C  N  L  L  K  L  Y  Q  L  *  A  *  T  F  L  L  K  R  L  L  W  T  S  I  Y  Y  </first_frame>
            <second_frame>  T  A  V  G  P  T  A  G  F  W  A  V  P  A  R  P  D  F  G  Q  I  W  S  F  A  A  A  P  P  P  E  M  M  V  P  T  S  A  A  A  A  A  A  A  A  A  A  L  S  S  Q  S  S  R  F  F  Q  Q  Q  M  G  E  A  S  A  A  R  V  G  N  Y  L  P  M  T  Q  G  H  L  N  L  L  A  S  L  S  G  P  P  Q  P  S  S  G  R  R  D  D  D  G  R  *  R  Y  D  Y  C  Y  C  Y  C  Y  R  Y  C  C  *  Y  I  V  *  M  C  F  N  V  L  V  C  V  R  *  E  I  C  C  *  V  L  V  S  E  K  *  T  R  G  L  F  N  F  M  N  Y  C  *  D  *  V  C  L  L  Y  L  I  C  Q  E  F  T  F  T  E  F  W  C  C  K  L  W  D  D  N  T  K  H  K  H  Q  G  K  L  L  L  V  M  M  N  L  V  G  F  V  L  L  F  A  D  L  T  I  S  C  F  D  H  I  V  T  R  Y  N  R  G  S  V  W  T  M  K  T  C  S  S  T  *  M  F  C  K  E  T  M  A  V  S  V  E  F  N  S  V  I  C  *  N  Y  I  S  C  E  L  K  L  S  Y  S  K  D  C  Y  G  L  Q  F  I  T </second_frame>
            <third_frame>   L  L  W  V  P  Q  L  G  F  G  L  F  Q  L  G  L  I  L  V  K  F  G  A  L  R  R  H  R  H  L  K  *  W  C  Q  P  P  R  L  Q  Q  L  Q  P  R  Q  R  *  V  R  R  V  L  D  S  F  S  S  R  W  V  R  L  Q  L  L  E  L  G  I  T  Y  Q  *  L  K  G  I  S  I  C  *  L  L  Y  Q  V  L  H  S  P  L  P  G  E  E  T  T  T  D  V  E  D  M  I  I  V  I  V  I  V  I  V  I  V  V  N  I  S  Y  K  C  V  L  M  F  L  F  V  L  D  E  K  F  V  A  R  F  *  *  V  R  N  E  L  G  A  C  S  I  S  *  I  I  A  R  I  R  F  V  C  Y  I  S  F  V  K  S  L  R  S  P  S  F  G  V  V  S  C  G  T  I  T  R  N  T  S  I  R  G  S  C  C  L  *  *  *  I  W  W  G  L  F  C  C  L  Q  T  S  Q  *  A  A  L  I  T  L  *  Q  D  I  I  G  D  Q  C  G  L  *  K  P  V  V  P  H  E  C  F  V  R  K  P  W  R  F  P  L  N  S  I  L  *  F  V  E  T  I  S  V  V  S  L  N  F  P  T  Q  K  I  A  M  D  F  N  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116139" stop="116444"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAVGPTAGFWAVPARPDFGQIWSFAAAPPPEMMVPTSAAAAAAAAAALSSQSSRFFQQQMGEASAARVGNYLPMTQGHLNLLASLSGPPQPSSGRRDDDGR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116613" stop="116846"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCLLYLICQEFTFTEFWCCKLWDDNTKHKHQGKLLLVMMNLVGFVLLFADLTISCFDHIVTRYNRGSVWTMKTCSST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="120652" PGL_stop="123125"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120652" e_stop="120867"/>
            <exon e_start="121436" e_stop="121538"/>
            <exon e_start="122282" e_stop="122353"/>
            <exon e_start="122701" e_stop="122906"/>
            <exon e_start="123020" e_stop="123125"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.898" e_score="0.991"/>
          <exon-intron don_prob="0.983" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="0.995"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="120652" e_stop="120867" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.898">
            <gDNA_intron_boundary i_start="120868" i_stop="121435" i_length="568"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121436" e_stop="121538" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.971">
            <gDNA_intron_boundary i_start="121539" i_stop="122281" i_length="743"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="122282" e_stop="122353" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.975">
            <gDNA_intron_boundary i_start="122354" i_stop="122700" i_length="347"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="122701" e_stop="122906" e_length="206"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122907" i_stop="123019" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="123020" e_stop="123125" e_length="106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120652" stop="120867"/>
              <exon start="121436" stop="121538"/>
              <exon start="122282" stop="122353"/>
              <exon start="122701" stop="122906"/>
              <exon start="123020" stop="123125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGATTTTAGAACGTAGAAAAACAACAATTTTCAAAAGCTAATCCCAAATTCCAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGG : TGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTG : CTTTTTGTTTCTGATGAAATATTTACGCAACCAGTATTCCACTGCAACAACATCTCTGGATTTGTAGATCCG : GTTGTTCCAGATAATGAAAACAGTGCCTTGTACTCCACACATACATTCAAGATTTTGTTCAAGGATGGTGGTTGTGGGACTTTCGTGCCATTATTTTTCAACTTAATCGCCTCTGTGAGACGAGCTCAGCAACAGTCTGGGGTACAGCCACGGGCAGACCCTCTCCAAGCTGCACAAACTCCAGTTGATGAGATGATTAGACATGC : TTATGTCGATCCCAATGATCCAACGAAAATCTTCTTGCAGCAGCCTACTCCAGAGTCGCAACTTAGGCGTCGTTCATACCAATCACAACCTGCTTAAAACTCAATA</gDNA_template>
            <first_frame> *  D  F  R  T  *  K  N  N  N  F  Q  K  L  I  P  N  S  K  N  F  P  I  G  D  F  F  F  R  S  E  T  E  N  K  N  G  S  E  S  S  I  I  S  *  W  N  A  N  S  F  P  Q  *  I  V  R  P  I  *  T  W  C  *  V  *  G  *  Q  N  P  W  :  C  R  K  N  K  N  K  R  Y  N  L  L  V  E  Y  S  D  G  L  C  C  K  D  A  C  G  F  H  C  F  *  Y  A  F   : A  F  C  F  *  *  N  I  Y  A  T  S  I  P  L  Q  Q  H  L  W  I  C  R  S   : G  C  S  R  *  *  K  Q  C  L  V  L  H  T  Y  I  Q  D  F  V  Q  G  W  W  L  W  D  F  R  A  I  I  F  Q  L  N  R  L  C  E  T  S  S  A  T  V  W  G  T  A  T  G  R  P  S  P  S  C  T  N  S  S  *  *  D  D  *  T  C  :  L  C  R  S  Q  *  S  N  E  N  L  L  A  A  A  Y  S  R  V  A  T  *  A  S  F  I  P  I  T  T  C  L  K  L  N  </first_frame>
            <second_frame>  K  I  L  E  R  R  K  T  T  I  F  K  S  *  S  Q  I  P  K  I  F  R  S  E  I  F  F  S  D  Q  K  Q  K  I  K  M  A  V  N  P  Q  L  F  P  N  G  M  P  I  P  F  L  N  E  L  F  V  L  S  R  H  G  V  E  F  E  V  D  K  I  P  G :   V  G  K  T  R  T  R  G  T  I  Y  L  S  N  I  R  M  V  F  V  A  K  M  P  V  D  F  I  A  F  D  M  P  L  :  L  F  V  S  D  E  I  F  T  Q  P  V  F  H  C  N  N  I  S  G  F  V  D  P  :  V  V  P  D  N  E  N  S  A  L  Y  S  T  H  T  F  K  I  L  F  K  D  G  G  C  G  T  F  V  P  L  F  F  N  L  I  A  S  V  R  R  A  Q  Q  Q  S  G  V  Q  P  R  A  D  P  L  Q  A  A  Q  T  P  V  D  E  M  I  R  H  A :   Y  V  D  P  N  D  P  T  K  I  F  L  Q  Q  P  T  P  E  S  Q  L  R  R  R  S  Y  Q  S  Q  P  A  *  N  S  I </second_frame>
            <third_frame>   R  F  *  N  V  E  K  Q  Q  F  S  K  A  N  P  K  F  Q  K  F  S  D  R  R  F  F  F  P  I  R  N  R  K  *  K  W  Q  *  I  L  N  Y  F  L  M  E  C  Q  F  L  S  S  M  N  C  S  S  Y  L  D  M  V  L  S  L  R  L  T  K  S  L   : V  *  E  K  Q  E  Q  E  V  Q  S  T  C  R  I  F  G  W  S  L  L  Q  R  C  L  W  I  S  L  L  L  I  C  L  C :   F  L  F  L  M  K  Y  L  R  N  Q  Y  S  T  A  T  T  S  L  D  L  *  I  R :   L  F  Q  I  M  K  T  V  P  C  T  P  H  I  H  S  R  F  C  S  R  M  V  V  V  G  L  S  C  H  Y  F  S  T  *  S  P  L  *  D  E  L  S  N  S  L  G  Y  S  H  G  Q  T  L  S  K  L  H  K  L  Q  L  M  R  *  L  D  M   : L  M  S  I  P  M  I  Q  R  K  S  S  C  S  S  L  L  Q  S  R  N  L  G  V  V  H  T  N  H  N  L  L  K  T  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120695" stop="120867"/>
                    <exon start="121436" stop="121538"/>
                    <exon start="122282" stop="122353"/>
                    <exon start="122701" stop="122906"/>
                    <exon start="123020" stop="123116"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQIPKIFRSEIFFSDQKQKIKMAVNPQLFPNGMPIPFLNELFVLSRHGVEFEVDKIPGVGKTRTRGTIYLSNIRMVFVAKMPVDFIAFDMPLLFVSDEIFTQPVFHCNNISGFVDPVVPDNENSALYSTHTFKILFKDGGCGTFVPLFFNLIASVRRAQQQSGVQPRADPLQAAQTPVDEMIRHAYVDPNDPTKIFLQQPTPESQLRRRSYQSQPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="120705" e_stop="120867"/>
            <exon e_start="121436" e_stop="122293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.898" e_score="0.963"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="120705" e_stop="120867" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.898">
            <gDNA_intron_boundary i_start="120868" i_stop="121435" i_length="568"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="121436" e_stop="122293" e_length="858"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120705" stop="120867"/>
              <exon start="121436" stop="122293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGG : TGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGACTTTGCTGAGCAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTCATTCTGCAGCTTTTTGTTTCT</gDNA_template>
            <first_frame> Q  K  F  S  D  R  R  F  F  F  P  I  R  N  R  K  *  K  W  Q  *  I  L  N  Y  F  L  M  E  C  Q  F  L  S  S  M  N  C  S  S  Y  L  D  M  V  L  S  L  R  L  T  K  S  L   : V  *  E  K  Q  E  Q  E  V  Q  S  T  C  R  I  F  G  W  S  L  L  Q  R  C  L  W  I  S  L  L  L  I  C  L  W  Y  V  I  L  L  C  L  F  T  V  L  R  F  C  K  H  H  M  L  T  N  S  I  H  S  *  L  V  *  F  F  C  G  S  E  K  K  I  A  K  T  L  F  C  Y  S  Y  Y  Y  I  N  K  L  L  W  R  S  F  S  I  C  C  N  *  T  N  I  C  I  M  C  N  S  E  W  R  F  Q  V  *  R  L  A  I  F  L  L  L  L  L  F  E  A  E  Q  N  F  V  Y  D  M  L  L  N  P  V  V  L  F  S  L  *  N  T  F  *  K  V  V  F  Y  Y  V  Q  F  R  M  A  R  S  R  A  D  I  S  L  W  S  N  T  I  L  L  L  *  N  C  T  V  C  F  *  S  F  D  M  L  I  E  W  Y  Y  D  M  I  Y  I  *  F  V  Y  *  A  Q  H  C  *  I  Q  H  L  L  G  S  M  L  W  H  I  L  F  G  Y  L  L  R  C  M  T  *  I  R  V  H  L  F  Y  V  F  V  Q  R  N  N  L  V  S  W  *  L  C  *  A  R  S  Y  K  T  E  K  C  K  L  H  L  L  *  Q  S  L  F  T  F  F  H  S  A  A  F  C  F  </first_frame>
            <second_frame>  K  N  F  P  I  G  D  F  F  F  R  S  E  T  E  N  K  N  G  S  E  S  S  I  I  S  *  W  N  A  N  S  F  P  Q  *  I  V  R  P  I  *  T  W  C  *  V  *  G  *  Q  N  P  W  :  C  R  K  N  K  N  K  R  Y  N  L  L  V  E  Y  S  D  G  L  C  C  K  D  A  C  G  F  H  C  F  *  Y  A  F  G  M  L  Y  F  Y  V  F  L  P  S  S  D  F  A  N  T  T  C  *  P  T  L  F  T  H  D  W  Y  S  F  S  V  D  Q  R  R  K  S  R  K  L  S  F  V  T  L  T  I  I  L  T  S  Y  Y  G  A  P  S  V  S  A  V  T  R  P  T  Y  A  *  C  A  I  Q  N  G  D  S  K  Y  N  D  *  R  Y  F  F  C  C  F  F  L  R  L  N  K  T  L  C  M  I  C  F  *  I  L  *  F  C  S  L  F  E  I  H  F  R  K  S  Y  F  T  M  C  N  S  E  W  R  V  V  E  Q  I  Y  H  F  G  Q  I  R  S  F  S  Y  E  T  V  L  F  V  S  K  A  L  T  C  *  L  N  G  I  M  T  *  F  I  S  D  L  Y  I  K  H  N  I  A  R  Y  N  I  C  *  E  A  C  Y  G  I  Y  C  S  D  I  C  *  D  A  *  H  E  F  V  F  I  C  S  M  F  L  F  R  E  I  I  W  *  V  G  D  F  A  E  Q  E  V  T  K  L  R  N  V  S  Y  I  C  F  D  K  V  Y  L  P  F  F  I  L  Q  L  F  V  S </second_frame>
            <third_frame>   K  I  F  R  S  E  I  F  F  S  D  Q  K  Q  K  I  K  M  A  V  N  P  Q  L  F  P  N  G  M  P  I  P  F  L  N  E  L  F  V  L  S  R  H  G  V  E  F  E  V  D  K  I  P  G :   V  G  K  T  R  T  R  G  T  I  Y  L  S  N  I  R  M  V  F  V  A  K  M  P  V  D  F  I  A  F  D  M  P  L  V  C  Y  T  S  M  S  F  Y  R  P  P  I  L  Q  T  P  H  A  N  Q  L  Y  S  L  M  T  G  I  V  F  L  W  I  R  E  E  N  R  E  N  S  L  L  L  L  L  L  L  Y  *  Q  V  T  M  A  L  L  Q  Y  L  L  *  L  D  Q  H  M  H  N  V  Q  F  R  M  A  I  P  S  I  T  I  S  D  I  S  F  V  A  S  F  *  G  *  T  K  L  C  V  *  Y  A  S  E  S  C  S  F  V  L  S  L  K  Y  I  L  E  S  R  I  L  L  C  A  I  Q  N  G  A  *  *  S  R  Y  I  T  L  V  K  Y  D  P  S  P  M  K  L  Y  C  L  F  L  K  L  *  H  V  N  *  M  V  L  *  H  D  L  Y  L  I  C  I  L  S  T  T  L  L  D  T  T  S  A  R  K  H  V  M  A  Y  I  V  R  I  F  V  K  M  H  D  M  N  S  C  S  S  V  L  C  F  C  S  E  K  *  S  G  K  L  V  T  L  L  S  K  K  L  Q  N  *  E  M  *  A  T  F  A  L  T  K  F  I  Y  L  F  S  F  C  S  F  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120707" stop="120867"/>
                    <exon start="121436" stop="121691"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIFRSEIFFSDQKQKIKMAVNPQLFPNGMPIPFLNELFVLSRHGVEFEVDKIPGVGKTRTRGTIYLSNIRMVFVAKMPVDFIAFDMPLVCYTSMSFYRPPILQTPHANQLYSLMTGIVFLWIREENRENSLLLLLLLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="127289" PGL_stop="123428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127289" e_stop="127002"/>
            <exon e_start="125635" e_stop="125462"/>
            <exon e_start="124689" e_stop="123428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.993"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="127289" e_stop="127002" e_length="288"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125635" e_stop="125462" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="124689" e_stop="123428" e_length="1262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127289" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="123428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315915" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAAAAAAAAAATTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG : GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG : GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGAGTACATCTGTACTATATATTAACAAGAGGAGTCTTGGAGTG</gDNA_template>
            <first_frame> H  K  K  K  I  R  R  K  P  I  A  A  L  I  Q  E  Y  S  E  R  E  E  E  E  L  V  T  M  A  A  V  N  G  V  G  L  S  W  P  S  K  L  T  K  N  Q  T  P  K  W  G  F  S  P  S  H  R  R  C  N  P  S  S  S  S  S  S  A  T  I  R  M  T  A  S  V  D  E  K  K  K  T  F  T  L  E  K  S  E  E  A  F  S  K  A  K  :  E  L  M  P  G  G  V  N  S  P  V  R  A  F  K  S  V  G  G  Q  P  I  I  I  D  S  V  K  G  S  R  M  R  D  I  D  G  N  E  Y  I  D  Y  V  G  S  W  G  P  A  I  I  G  H  A  D  D  E  :  V  L  A  A  L  A  E  T  M  K  K  G  T  S  F  G  A  P  C  L  L  E  N  T  L  A  E  M  V  I  S  A  V  P  S  I  E  M  V  R  F  V  N  S  G  T  E  A  C  M  G  V  L  R  L  A  R  A  F  T  C  R  P  K  I  I  K  F  E  G  C  Y  H  G  H  A  D  P  F  L  V  K  A  G  S  G  V  A  T  L  G  L  P  D  S  P  G  V  P  K  A  A  T  I  D  T  L  T  A  P  Y  N  D  I  S  A  V  E  S  L  F  E  E  H  K  G  E  I  A  A  V  I  L  E  P  V  V  G  N  A  G  F  I  P  P  K  L  E  F  L  A  A  I  R  K  I  T  K  E  N  D  A  L  L  I  F  D  E  V  M  T  G  F  R  L  A  Y  G  G  A  Q  E  Y  F  G  I  T  P  D  L  T  T  L  G  K  I  I  G  G  G  L  P  V  G  A  Y  G  G  R  R  D  I  M  E  M  V  A  P  A  G  P  M  Y  Q  A  G  T  L  S  G  N  P  L  A  M  T  A  G  I  H  T  L  K  R  L  Q  G  Q  G  T  Y  E  H  L  D  K  I  T  A  E  L  T  Q  G  I  L  D  A  G  K  K  T  G  H  A  M  C  G  G  S  I  R  G  M  F  G  F  F  F  A  D  G  P  I  Y  N  F  S  D  A  K  K  S  D  T  E  K  F  G  R  F  Y  R  G  M  L  E  E  G  V  Y  F  A  P  S  Q  F  E  A  G  F  T  S  L  A  H  T  P  E  D  I  Q  R  T  V  A  A  A  E  K  V  L  K  Q  I  *  P  L  Y  F  F  L  Y  A  R  W  R  D  F  P  F  *  V  F  V  L  L  N  K  R  *  F  C  N  I  L  F  I  Q  K  H  A  A  L  F  Y  L  L  Y  L  K  H  F  L  V  T  *  V  H  L  Y  Y  I  L  T  R  G  V  L  E   </first_frame>
            <second_frame>  T  K  K  K  L  E  E  N  P  L  Q  H  *  F  K  N  T  Q  R  E  K  R  K  S  W  *  Q  W  L  L  *  M  V  *  D  F  H  G  H  Q  N  *  P  K  I  K  H  P  N  G  V  F  L  H  L  T  V  D  A  T  H  L  L  L  L  L  L  Q  P  L  E  *  Q  P  Q  L  M  K  R  R  K  R  S  H  L  R  S  L  K  K  L  S  A  K  P  R :   S  *  C  Q  E  V  *  I  P  L  S  V  L  S  S  Q  L  A  D  N  L  S  L  L  T  P  *  R  A  L  V  C  G  T  *  M  V  T  S  T  L  T  M  S  D  H  G  D  Q  L  *  L  V  M  R  M  M  R :   C  *  Q  H  W  L  K  Q  *  R  K  E  R  V  S  V  L  H  V  S  L  K  I  H  W  Q  R  W  L  F  Q  L  F  Q  A  *  K  W  F  D  L  S  T  L  V  Q  K  H  V  W  E  Y  Y  G  W  L  V  L  S  L  A  V  L  R  S  S  N  S  R  V  V  T  M  V  M  L  I  H  F  L  L  K  Q  A  V  A  L  P  P  S  V  F  L  T  L  R  E  F  Q  R  Q  L  L  S  I  L  *  P  H  L  T  M  T  F  L  L  L  R  A  S  L  R  S  T  K  E  K  *  P  L  *  F  S  S  L  *  S  E  M  L  A  S  S  H  L  S  *  N  F  L  L  P  F  A  R  S  P  K  R  M  M  H  F  L  F  S  T  K  S  *  L  D  L  D  W  H  M  A  V  L  K  S  I  L  E  *  L  Q  I  *  Q  H  S  G  R  L  L  A  V  A  C  Q  *  V  L  T  E  E  D  G  I  *  W  R  W  *  H  L  Q  D  Q  C  I  K  L  A  P  *  V  E  T  H  W  P  *  L  L  E  F  T  R  L  S  G  Y  K  D  R  E  H  T  N  T  W  T  R  S  P  R  N  L  H  K  E  S  W  M  L  E  R  R  P  V  M  Q  C  V  V  A  P  *  G  G  C  L  A  S  S  S  R  M  V  P  S  I  T  F  R  M  Q  R  R  V  I  Q  K  N  L  A  D  S  I  E  G  C  W  R  K  V  F  T  L  H  H  H  S  L  R  L  D  L  L  A  *  H  T  L  Q  R  I  F  K  G  L  *  L  Q  L  K  K  F  *  S  K  F  N  H  Y  I  S  F  C  M  L  D  G  E  I  F  L  F  K  F  L  F  C  *  I  K  G  D  F  V  T  Y  C  L  F  R  N  M  L  H  Y  F  T  S  C  I  *  S  I  F  W  S  L  E  Y  I  C  T  I  Y  *  Q  E  E  S  W  S  </second_frame>
            <third_frame>   Q  K  K  N  *  K  K  T  H  C  S  T  N  S  R  I  L  R  E  R  R  G  R  V  G  N  N  G  C  C  K  W  C  R  T  F  M  A  I  K  I  D  Q  K  S  N  T  Q  M  G  F  F  S  I  S  P  S  M  Q  P  I  F  F  F  F  F  C  N  H  *  N  D  S  L  S  *  *  K  E  E  N  V  H  T  *  E  V  *  R  S  F  Q  Q  S  Q   : G  V  D  A  R  R  C  K  F  P  C  P  C  F  Q  V  S  W  R  T  T  Y  H  Y  *  L  R  E  G  L  S  Y  A  G  H  R  W  *  R  V  H  *  L  C  R  I  M  G  T  S  Y  N  W  S  C  G  *  *   : G  A  S  S  I  G  *  N  N  E  E  R  N  E  F  R  C  S  M  S  P  *  K  Y  T  G  R  D  G  Y  F  S  C  S  K  H  R  N  G  S  I  C  Q  L  W  Y  R  S  M  Y  G  S  T  T  A  G  S  C  F  H  L  P  S  *  D  H  Q  I  R  G  L  L  P  W  S  C  *  S  I  S  C  *  S  R  Q  W  R  C  H  P  R  S  S  *  L  S  G  S  S  K  G  S  Y  Y  R  Y  S  D  R  T  L  Q  *  H  F  C  C  *  E  P  L  *  G  A  Q  R  R  N  S  R  C  N  S  R  A  C  S  R  K  C  W  L  H  P  T  *  A  R  I  S  C  C  H  S  Q  D  H  Q  R  E  *  C  T  S  Y  F  R  R  S  H  D  W  I  *  I  G  I  W  R  C  S  R  V  F  W  N  N  S  R  F  D  N  T  R  E  D  Y  W  R  W  L  A  S  R  C  L  R  R  K  T  G  Y  N  G  D  G  S  T  C  R  T  N  V  S  S  W  H  P  K  W  K  P  I  G  H  D  C  W  N  S  H  A  *  A  V  T  R  T  G  N  I  R  T  L  G  Q  D  H  R  G  T  Y  T  R  N  L  G  C  W  K  E  D  R  S  C  N  V  W  W  L  H  K  G  D  V  W  L  L  L  R  G  W  S  H  L  *  L  F  G  C  K  E  E  *  Y  R  K  I  W  Q  I  L  *  R  D  A  G  G  R  C  L  L  C  T  I  T  V  *  G  W  I  Y  *  L  S  T  H  S  R  G  Y  S  K  D  C  S  C  S  *  K  S  F  E  A  N  L  T  T  I  F  L  F  V  C  *  M  E  R  F  S  F  L  S  F  C  S  V  E  *  K  V  I  L  *  H  I  V  Y  S  E  T  C  C  I  I  L  P  P  V  F  K  A  F  F  G  H  L  S  T  S  V  L  Y  I  N  K  R  S  L  G  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127289" stop="127002"/>
                    <exon start="125635" stop="125462"/>
                    <exon start="124689" stop="123622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1527</number_coding_nucleotides>
                  <number_encoded_amino_acids>509</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKKKIRRKPIAALIQEYSEREEEELVTMAAVNGVGLSWPSKLTKNQTPKWGFSPSHRRCNPSSSSSSATIRMTASVDEKKKTFTLEKSEEAFSKAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTCRPKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATIDTLTAPYNDISAVESLFEEHKGEIAAVILEPVVGNAGFIPPKLEFLAAIRKITKENDALLIFDEVMTGFRLAYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQGQGTYEHLDKITAELTQGILDAGKKTGHAMCGGSIRGMFGFFFADGPIYNFSDAKKSDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQRTVAAAEKVLKQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="134581" PGL_stop="133876"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134581" e_stop="133876"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="134581" e_stop="133876" e_length="706"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134581" stop="133876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGCTTCTAACTTTCTTGCTGACATGGTTCATGAAGGATTTCTCCCTGATGTAGTTGGTTATTCGGCAGTCATAGACGGCCTTGTTAAGATTAAACAGTTGGATGATGCACTGAATCTTTTCAGAGGGATCTGTGCTCGGGGTTATTGCCCTGATGTGGTTGCTTATAACATTATGATAAATGGGCTTTGTAAGGCCAAAAGGGTACTTGACGCCCAGAATCTTCTTGATGAAATGATGGCTAAGGGACTTATTCCATCAGTTGTTACCTACAACTCACTGATTGATGGGTGGTGCAAAAATGGTGATGTAGATCGAGCAATTGCATATCTCACTAGGATGAATGTAAAAGAACGGGAGCCCAATGTTATCACTTACACCACTTTAATAGATGGGTTATGCAATGCCGGCAAACCAAGTGATGCTATTAGTCTTTTGGTCAATATGGAGGCAAATGGGTGCTCTCCAAATAGAATAACTTTTATGGCTCTCATTAGTGGTCTGTGCAAGTGTCGGAAGCCAGATGATGCTCTGATTTATCTGCAGGAAATGGAGAGGAAGGATATGAAACCCGATCCATCGATCTACATAGTGCTAATAGATGCCTTTATAAAAAATATGAATCCTAATGAAGCTTGTGAGCTACTACAAAAGGTGGTCCATGACGAGTCTCTTCTAGATTTAAATATTAAGAGTCGACCTATTC</gDNA_template>
            <first_frame> K  A  S  N  F  L  A  D  M  V  H  E  G  F  L  P  D  V  V  G  Y  S  A  V  I  D  G  L  V  K  I  K  Q  L  D  D  A  L  N  L  F  R  G  I  C  A  R  G  Y  C  P  D  V  V  A  Y  N  I  M  I  N  G  L  C  K  A  K  R  V  L  D  A  Q  N  L  L  D  E  M  M  A  K  G  L  I  P  S  V  V  T  Y  N  S  L  I  D  G  W  C  K  N  G  D  V  D  R  A  I  A  Y  L  T  R  M  N  V  K  E  R  E  P  N  V  I  T  Y  T  T  L  I  D  G  L  C  N  A  G  K  P  S  D  A  I  S  L  L  V  N  M  E  A  N  G  C  S  P  N  R  I  T  F  M  A  L  I  S  G  L  C  K  C  R  K  P  D  D  A  L  I  Y  L  Q  E  M  E  R  K  D  M  K  P  D  P  S  I  Y  I  V  L  I  D  A  F  I  K  N  M  N  P  N  E  A  C  E  L  L  Q  K  V  V  H  D  E  S  L  L  D  L  N  I  K  S  R  P  I  </first_frame>
            <second_frame>  K  L  L  T  F  L  L  T  W  F  M  K  D  F  S  L  M  *  L  V  I  R  Q  S  *  T  A  L  L  R  L  N  S  W  M  M  H  *  I  F  S  E  G  S  V  L  G  V  I  A  L  M  W  L  L  I  T  L  *  *  M  G  F  V  R  P  K  G  Y  L  T  P  R  I  F  L  M  K  *  W  L  R  D  L  F  H  Q  L  L  P  T  T  H  *  L  M  G  G  A  K  M  V  M  *  I  E  Q  L  H  I  S  L  G  *  M  *  K  N  G  S  P  M  L  S  L  T  P  L  *  *  M  G  Y  A  M  P  A  N  Q  V  M  L  L  V  F  W  S  I  W  R  Q  M  G  A  L  Q  I  E  *  L  L  W  L  S  L  V  V  C  A  S  V  G  S  Q  M  M  L  *  F  I  C  R  K  W  R  G  R  I  *  N  P  I  H  R  S  T  *  C  *  *  M  P  L  *  K  I  *  I  L  M  K  L  V  S  Y  Y  K  R  W  S  M  T  S  L  F  *  I  *  I  L  R  V  D  L  F </second_frame>
            <third_frame>   S  F  *  L  S  C  *  H  G  S  *  R  I  S  P  *  C  S  W  L  F  G  S  H  R  R  P  C  *  D  *  T  V  G  *  C  T  E  S  F  Q  R  D  L  C  S  G  L  L  P  *  C  G  C  L  *  H  Y  D  K  W  A  L  *  G  Q  K  G  T  *  R  P  E  S  S  *  *  N  D  G  *  G  T  Y  S  I  S  C  Y  L  Q  L  T  D  *  W  V  V  Q  K  W  *  C  R  S  S  N  C  I  S  H  *  D  E  C  K  R  T  G  A  Q  C  Y  H  L  H  H  F  N  R  W  V  M  Q  C  R  Q  T  K  *  C  Y  *  S  F  G  Q  Y  G  G  K  W  V  L  S  K  *  N  N  F  Y  G  S  H  *  W  S  V  Q  V  S  E  A  R  *  C  S  D  L  S  A  G  N  G  E  E  G  Y  E  T  R  S  I  D  L  H  S  A  N  R  C  L  Y  K  K  Y  E  S  *  *  S  L  *  A  T  T  K  G  G  P  *  R  V  S  S  R  F  K  Y  *  E  S  T  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134581" stop="133877"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KASNFLADMVHEGFLPDVVGYSAVIDGLVKIKQLDDALNLFRGICARGYCPDVVAYNIMINGLCKAKRVLDAQNLLDEMMAKGLIPSVVTYNSLIDGWCKNGDVDRAIAYLTRMNVKEREPNVITYTTLIDGLCNAGKPSDAISLLVNMEANGCSPNRITFMALISGLCKCRKPDDALIYLQEMERKDMKPDPSIYIVLIDAFIKNMNPNEACELLQKVVHDESLLDLNIKSRPI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="139767" PGL_stop="136809"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139767" e_stop="139567"/>
            <exon e_start="137317" e_stop="136809"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="139767" e_stop="139567" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="139566" i_stop="137318" i_length="2249"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="137317" e_stop="136809" e_length="509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139767" stop="139567"/>
              <exon start="137317" stop="136809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325162" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGTAAGCTTCTTCTCTGTTTCTTTTTTCTTCATTTTTTCTGCATAAAAAGATCGAAATCAGCTACTATTTGAGAGAGAGATGTCGTATTTGTTACCACATCTTCACTCTGGATGGGCTGTGGATCAAGCTATCCTTGCGGAAGAAGAACGCCTTGTACTTATTCGATTTGGCCATGATTGGGATGATACTTGTATGCAG : ATGGATGAGGTGTTGTCTTCAGTTGCGGAGACGATCAAGAACTTTGCTGTGATTTACCTGGTTGACATCACCGAGGTTCCTGATTTTAACACGATGTACGAGCTGTATGATCCATCCACCATCATGTTCTTCTTCAGGAACAAGCACATTATGATTGATCTTGGCACCGGGAACAATAACAAGATCAACTGGGCGCTTAAGGATAAACAGGAGTTCATCGACATTGTTGAGACTGTGTATCGCGGTGCCAGAAAAGGCCGGGGTCTAGTCATAGCACCAAAAGATTACTCTACCAAGTACAGATACTAAGTTACTTGGTTGCTGGAACATGTTGTACTTTATGATGAAGCTGGAAGAAGTTATAGAACAATTTATAAATTGAAATGTAAAAGTTTGGTCAAGTATAATTATGATGAGCTTCTTGGATAAATCTTGATTGAGAAAAAATAAAAATGTAAAGCTGATTCTTAATGTTCTTAGATTAAAATCATGATTTGAAGTTAAAATTT</gDNA_template>
            <first_frame> S  V  S  F  F  S  V  S  F  F  F  I  F  S  A  *  K  D  R  N  Q  L  L  F  E  R  E  M  S  Y  L  L  P  H  L  H  S  G  W  A  V  D  Q  A  I  L  A  E  E  E  R  L  V  L  I  R  F  G  H  D  W  D  D  T  C  M  Q  :  M  D  E  V  L  S  S  V  A  E  T  I  K  N  F  A  V  I  Y  L  V  D  I  T  E  V  P  D  F  N  T  M  Y  E  L  Y  D  P  S  T  I  M  F  F  F  R  N  K  H  I  M  I  D  L  G  T  G  N  N  N  K  I  N  W  A  L  K  D  K  Q  E  F  I  D  I  V  E  T  V  Y  R  G  A  R  K  G  R  G  L  V  I  A  P  K  D  Y  S  T  K  Y  R  Y  *  V  T  W  L  L  E  H  V  V  L  Y  D  E  A  G  R  S  Y  R  T  I  Y  K  L  K  C  K  S  L  V  K  Y  N  Y  D  E  L  L  G  *  I  L  I  E  K  K  *  K  C  K  A  D  S  *  C  S  *  I  K  I  M  I  *  S  *  N   </first_frame>
            <second_frame>  L  *  A  S  S  L  F  L  F  S  S  F  F  L  H  K  K  I  E  I  S  Y  Y  L  R  E  R  C  R  I  C  Y  H  I  F  T  L  D  G  L  W  I  K  L  S  L  R  K  K  N  A  L  Y  L  F  D  L  A  M  I  G  M  I  L  V  C  R :   W  M  R  C  C  L  Q  L  R  R  R  S  R  T  L  L  *  F  T  W  L  T  S  P  R  F  L  I  L  T  R  C  T  S  C  M  I  H  P  P  S  C  S  S  S  G  T  S  T  L  *  L  I  L  A  P  G  T  I  T  R  S  T  G  R  L  R  I  N  R  S  S  S  T  L  L  R  L  C  I  A  V  P  E  K  A  G  V  *  S  *  H  Q  K  I  T  L  P  S  T  D  T  K  L  L  G  C  W  N  M  L  Y  F  M  M  K  L  E  E  V  I  E  Q  F  I  N  *  N  V  K  V  W  S  S  I  I  M  M  S  F  L  D  K  S  *  L  R  K  N  K  N  V  K  L  I  L  N  V  L  R  L  K  S  *  F  E  V  K  I  </second_frame>
            <third_frame>   C  K  L  L  L  C  F  F  F  L  H  F  F  C  I  K  R  S  K  S  A  T  I  *  E  R  D  V  V  F  V  T  T  S  S  L  W  M  G  C  G  S  S  Y  P  C  G  R  R  T  P  C  T  Y  S  I  W  P  *  L  G  *  Y  L  Y  A   : D  G  *  G  V  V  F  S  C  G  D  D  Q  E  L  C  C  D  L  P  G  *  H  H  R  G  S  *  F  *  H  D  V  R  A  V  *  S  I  H  H  H  V  L  L  Q  E  Q  A  H  Y  D  *  S  W  H  R  E  Q  *  Q  D  Q  L  G  A  *  G  *  T  G  V  H  R  H  C  *  D  C  V  S  R  C  Q  K  R  P  G  S  S  H  S  T  K  R  L  L  Y  Q  V  Q  I  L  S  Y  L  V  A  G  T  C  C  T  L  *  *  S  W  K  K  L  *  N  N  L  *  I  E  M  *  K  F  G  Q  V  *  L  *  *  A  S  W  I  N  L  D  *  E  K  I  K  M  *  S  *  F  L  M  F  L  D  *  N  H  D  L  K  L  K  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139719" stop="139567"/>
                    <exon start="137317" stop="137009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDRNQLLFEREMSYLLPHLHSGWAVDQAILAEEERLVLIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTIMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 36 chains have been computed
$ 
$ memory statistics:
$ 228376 bytes spliced alignments in total
$ 25 spliced alignments have been stored
$ 9135 bytes was the average size of a spliced alignment
$ 27280 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1515 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 39 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 00:05:38
-->
