<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-10 03:40:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0008H22-1z4Dz/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-0YudIx/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0YudIx/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320467" ref_strand="+" ref_description="SGN-U320467        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein, contains Pfam domains, PF02375: jmjN domain, PF02373: jmjC domain and PF02928: C5HC2 zinc finger | chr1:2737557-2743673 FORWARD | Aliases: F22O13.10, F22O13_10(evalue: 4e-61, score=232) genbank/nr: gi|15223267|ref|NP_172338.1| expressed protein [Arabidopsis thaliana](evalue: 3e-59, score=232)">
      <seq>gtcactaaagatggaattaattgttcacctagttcagagagcatgaaagttgaggataattcaaaagatgaaatacatcgtggacctaatcaagatactcattctttcattggaggttcgtctgtaaatatggatattgatagacatgcccaagcccctcaggttgcagatacttgtcctcagtcccgtcaaccattcgactgtaaaccaaataaagaaggtagccagaataagaccatggagtgtgcacaacctttatcaggtgactctcccgtctctcaaaacaatttggacagaggttttcgccagaaaggtcctcggattgcaaaagtggtgaggagactcgcttgtaatgtggaacctctggattatggagttatccagcctgggaagttatggtgtgacaaccgggttatttatcccaagggattcaggagccgggtcagatacattgatgttttagatccaacaaatatgtctcactatatttctgaagttatagatgcaggacgagatggcccactgtttatggttacacttgagcgttgtcccaatgaagtgtttgttcacttgtcccctgttaaatgctgggatatggtccgcgagagagtgaatcaagaaattttaaagcaacataagttgggaaagccaaagcttttgcctttgcaaccacctggaagtgttgagggcatggaaatgtttggtttttcaacaacagagattgtacaggccattcaagatatggatataaaccgggtatgttctgaattctggaaatctaaacccttgatgcagactgtacaatcttccctagttgtggaccgttcaaaactcaatataaaatccgagatctcaaatgatcctactcgagctgatatagttctgagtggcctacttaagaaggcaaactgtgaagaacttcatgcattgaacaatcttctcaaaaccaataatttgacccctaatcaaggtttaatgactcgacttcttaatgaagagattgataagcgaggtagatgattttgattttcagcctcgtcgaggcctggacttctcataaggagttaaccctgtaaatgcttaagtcacattctagttttaggttaaattgcattaggttaaccccatttcttgaatttttgcactggctcttaacaggaagatgaaaaaaggctggcacatagttacttttggacttttggttcttgaaatttttttgaggaaggttattgaaaatagaaaatacatttttcaatctttgttaaaaaaaagttccttaatttatacttggagatgtgagttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-1z4Dz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="849" stop="74280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1149" g_stop="1575" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1576" i_stop="1661" i_length="86">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1662" g_stop="1765" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="531" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1766" i_stop="2383" i_length="618">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2384" g_stop="2581" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="729" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2582" i_stop="2759" i_length="178">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2760" g_stop="3337" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="1307" r_length="578" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3338" i_stop="5105" i_length="1768">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5106" g_stop="5136" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1308" r_stop="1338" r_length="31" r_score="0.613"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-U320467" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1149" e_stop="1575"/>
          <exon e_start="1662" e_stop="1765"/>
          <exon e_start="2384" e_stop="2581"/>
          <exon e_start="2760" e_stop="3337"/>
          <exon e_start="5106" e_stop="5136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTAAAGATGGAATTAATTGTTCACCTAGTTCAGAGAGCATGAAAGTTGAGGATAATTCAAAAGATGAAATACATCGTGGACCTAATCAAGATACTCATTCTTTCATTGGAGGTTCGTCTGTAAATATGGATATTGATAGACATGCCCAAGCCCCTCAGGTTGCAGATACTTGTCCTCAGTCCCGTCAACCATTCGACTGTAAACCAAATAAAGAAGGTAGCCAGAATAAGACCATGGAGTGTGCACAACCTTTATCAGGTGACTCTCCCGTCTCTCAAAACAATTTGGACAGAGGTTTTCGCCAGAAAGGTCCTCGGATTGCAAAAGTGGTGAGGAGACTCGCTTGTAATGTGGAACCTCTGGATTATGGAGTTATCCAGCCTGGGAAGTTATGGTGTGACAACCGGGTTATTTATCCCAAGGGTATAATACATGTGAAATAATTGTATTATTTTTACTCTTACTCTTGGAAGTGATGATAGACAACTTTGTTCTTTTGTTAAATGCAGGATTCAGGAGCCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATGGTATTGGATATTCTGTTTGAATGGAGCTATTTGTCAGATTTTGATTTTTGTGTGTACCTGTGGTATTTTAATTCTTATTTTGTGATATTGTGGTGCACTTAATTCTGCCGCAGTTCCTTTCTTGTCTCCTCTGCTTTAAGTTTTCCATGTAGAGTTGAGGCACACTTTATTTTCTTGTTAGTTTGATAACATGTCTATTAAACATTTATCATCAAGGGGTTTCTCCATGAAGCTTTGTGATCTCTCCAGCAGATTTCCAAGGGCTACAAGTTAGATTTATTATTTCTTTCAAAAGCTTTGTGAGTTTTTCTTTGGTTGTAATTTGCTGTTAGGGCAAGTTTGACTGCCACAAGTTTTCATCCCTTTAGACGAGAGGTCTATATTAGCTTAAATGAATTAGTCTTGTAGTGGTATAACTTTCAAAGCCTACAGGATTGAGGGTTACTTCAGAGTCTTACCTGTTTTGCCTTTTTTTTTTGGGTTTTCCTTCATGTGCCAGCTTAGTTGACATCTCTATATCTGTGTGTTATTTGGTTATTCATGCCGTTATGGTGTCATATTGTTATGCTATTTCCTGCCGTTCTAGTGTCTCTTTTAAGCAGATAAATGAACTTGCAGGTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAGGTTCTTTCACATATGTTCTTGAAATTAATATTAGATCCAAGGTTCACTAACTTCAAATCCGGAGAAAAATTTCAGTTGCCTATAATCTTATAGATAAAATAAAAATGCGGAACAAAATGGAAACTGAAGGGAAGCCTAAAAGATCTCGTCTTGACAGTATCTTTTCTTCTCATTGCAGGCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAAGAAGGCAAACTGTGAAGAACTTCATGCATTGAACAATCTTCTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGACTCGACTTCTTAATGAAGAGATTGATAAGCGAGGTAGATGATTTTGATTTTCAGCCTCGTCGAGGCCTGGACTTCTCATAAGGAGTTAACCCTGTAAATGCTTAAGTCACATTCTAGTTTTAGGTTAAATTGCATTAGGTTAACCCCATTTCTTGAATTTTTGCACTGGCTCTTAACAGGAAGATGAAAAAAGGCTGGCACATAGTTACTTTTGGACTTTTGGTTCTTGAAATTCTTTTGAGGAAGGTTATTGAAAATAGAAAATACATTTTTCAATCTTTGTTATAGAAAAGTTCCTTAATTTATACTTGGAGATGTGAGTTTAAAACTTGTGTATTATCAGGTTGTTATAAATGGTATGCATTCACTTAATTTCGATTGGGGAAAAGGACAATATACCTCAAACTATCGTAAATAGTGAGTGGTGCGCAAATATCTTTCGTCATACTTTTGGGACATTGATGTGCAGTTCAAAAATTAGAGCATATAGCCTTTCACTTTAACGAAAGACTTAATAATGATATGTGATGCAATTTTAGATTATGACAAGTGTATCTTCGTTAGTACGAAAGGTATATATGCTTCAATTTTTAGACGACAGGAGTATCAAAGTCTTGAAAATATGATAGAAGGTATCTACATATTATTTACGATAATTTTGAGTATATTTGTCTTGTTCCTTTGTATTGATGCATGCAATCATAACAATACATTTCAGCAAGGATTTGACCCAACAACTTTGCAACCTATAGATAAGCACAATTTGAGGAAATATTTTTAGAAAAAAACAATTATCTCTTTGTTCTGATTTATGTGAGACAATTCATTCTTCGAGAGTTGAATAACTTAAGTTTGACTTGCAATTTGCTCATGAGATTTTTAGTTTTTTTGAAATAAGATTTATATATTTGTAAGCTACGTAAAAAGTACTAATAAATCGTAATAATTGATAATTTGAATGTTTAGAAGATTTATGAAAAATTTATCATTAAAGATCAGATTTTAAAGATCAGATTTGTTTGAATTTCGTAATCGAAAGAGTCATATGAAATGGAATAATGGAGTATATGACAGATGAACAGTAATATTTGTAAATTGGATAATAATGTTCTGATGAAAATCTTTTAGTATAAAAGAGAAAACTAATGTCAAGTAGTTAATTGGGGCAAGTGAATTGAAATTCAATTAAAATAAAGGGATAATGTATAAGTACCTCTTCAACCTATGCTCGAAATTTCAGATACACATTTATATTGTACTAAGGTTTTACTAATCCCCGAACTTATTTTATTAATAATTTTCTATTCTTTTTCGGTCTACGTGACACTATTTTGTGGGCCCAACGCTGATTGACTTTTTATTCAAGATAGTGCCACGTAGGCTGAAAAAGGATAAAAAAATTACTTATATAATAAGTTCAGGGGTAATAAAACCTTAGTATAGTATAAGCGTGTCTGTGAGATTTCGGACATAGGTTGAGGGGTACTTGTGCATTTTCCCTAAAATAAATATAAGAAAATTAACTTTATGACACATAACTGTAGGAAGTTAATTTTCCATTTTTATGGTAAATGAGTATCAATAATTAAAGGGCAACTTTTACGTATAGTAAATAAAAATTTTATATTTGTATGTTATAGCAAAGTGTGCATAATTGCGCTCCATTGCAAACATAGAAACTGTATAATTCACTATACATATACACTTGAAGCAAATTGTATAAAACAAGAAAGAGAAAGACACTTAGGTAAAGAACTGTATAAAAACGAATTGTATTATTATAAGTGTATAGATATACAATTTGAATTTGTATAAAATGAGAAAAAGAGAAAGACAAAAGAGATTTGACAAGGAATATACAATTGAATTGAATTGTATAAAATGAGAAAGAGAGAAATTAGATACAATTTGAAAATTGTATAAAACAAAAAAGAGAGAAATTAGATACAATTTGAAAATTGTATAAAACGAGAAAGAGAGAAAGACAAAAGAAACTGGGCAGAGGAGTATTTTTATTGTATAATTATAAGTGTATAGGACGAATTTATATGTACTTGCATGTGTATATACAATTTTTTCACGCTTTATACAAACAGAAACACAATTTATACAAACAGAAACGAGAAA</genome_strand>
        <mrna_strand>GTCACTAAAGATGGAATTAATTGTTCACCTAGTTCAGAGAGCATGAAAGTTGAGGATAATTCAAAAGATGAAATACATCGTGGACCTAATCAAGATACTCATTCTTTCATTGGAGGTTCGTCTGTAAATATGGATATTGATAGACATGCCCAAGCCCCTCAGGTTGCAGATACTTGTCCTCAGTCCCGTCAACCATTCGACTGTAAACCAAATAAAGAAGGTAGCCAGAATAAGACCATGGAGTGTGCACAACCTTTATCAGGTGACTCTCCCGTCTCTCAAAACAATTTGGACAGAGGTTTTCGCCAGAAAGGTCCTCGGATTGCAAAAGTGGTGAGGAGACTCGCTTGTAATGTGGAACCTCTGGATTATGGAGTTATCCAGCCTGGGAAGTTATGGTGTGACAACCGGGTTATTTATCCCAAGG......................................................................................GATTCAGGAGCCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAG..................................................................................................................................................................................GCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAAGAAGGCAAACTGTGAAGAACTTCATGCATTGAACAATCTTCTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGACTCGACTTCTTAATGAAGAGATTGATAAGCGAGGTAGATGATTTTGATTTTCAGCCTCGTCGAGGCCTGGACTTCTCATAAGGAGTTAACCCTGTAAATGCTTAAGTCACATTCTAGTTTTAGGTTAAATTGCATTAGGTTAACCCCATTTCTTGAATTTTTGCACTGGCTCTTAACAGGAAGATGAAAAAAGGCTGGCACATAGTTACTTTTGGACTTTTGGTTCTTGAAATTTTTTTGAGGAAGGTTATTGAAAATAGAAAATACATTTTTCAATCTTTGTTAAAAAAAAGTTCCTTAATTTATACTTGGAGATGTGAGTTTTAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0YudIx/lycopersicum_combined_unigene_seqs" ref_id="SGN-U337128" ref_strand="+" ref_description="SGN-U337128        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein, contains Pfam domains, PF02375: jmjN domain, PF02373: jmjC domain and PF02928: C5HC2 zinc finger | chr1:2737557-2743673 FORWARD | Aliases: F22O13.10, F22O13_10(evalue: 3e-30, score=129) genbank/nr: gi|15223267|ref|NP_172338.1| expressed protein [Arabidopsis thaliana](evalue: 2e-28, score=129)">
      <seq>tcagatacattgatgtttttttatccaacaaatatgtctcactatatttggtgaattttagattcaagacgagatggcccactgtttatggttacacttgagcgttgtcccaatgaagtgtttgttcacttgtcccctgttaaatgctgggatatggtccgcgagagagtgaatcaagaaattttaaagcaacattagttgggaaagccaaagcttttgcctttgcaaccacctggaagtgttgagggcatggaaatgtttggtttttcaacaacagagattgtacaggccattcaagatatggatataaaccggttatgttctgaattctggaaatctaaacccttgatgcagactgtacaatcttccctagttgtggaccgttcaaaacttaatataaaatgcgagatctcaaatgatcctacttgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-1z4Dz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="1377" stop="3203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1677" g_stop="1765" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.865"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1766" i_stop="2383" i_length="618">
            <donor d_prob="0.717" d_score="0.84"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2384" g_stop="2581" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="288" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2582" i_stop="2759" i_length="178">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2760" g_stop="2903" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="432" r_length="144" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-U337128" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1677" e_stop="1765"/>
          <exon e_start="2384" e_stop="2581"/>
          <exon e_start="2760" e_stop="2903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATACATTGATG-TTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATGGTATTGGATATTCTGTTTGAATGGAGCTATTTGTCAGATTTTGATTTTTGTGTGTACCTGTGGTATTTTAATTCTTATTTTGTGATATTGTGGTGCACTTAATTCTGCCGCAGTTCCTTTCTTGTCTCCTCTGCTTTAAGTTTTCCATGTAGAGTTGAGGCACACTTTATTTTCTTGTTAGTTTGATAACATGTCTATTAAACATTTATCATCAAGGGGTTTCTCCATGAAGCTTTGTGATCTCTCCAGCAGATTTCCAAGGGCTACAAGTTAGATTTATTATTTCTTTCAAAAGCTTTGTGAGTTTTTCTTTGGTTGTAATTTGCTGTTAGGGCAAGTTTGACTGCCACAAGTTTTCATCCCTTTAGACGAGAGGTCTATATTAGCTTAAATGAATTAGTCTTGTAGTGGTATAACTTTCAAAGCCTACAGGATTGAGGGTTACTTCAGAGTCTTACCTGTTTTGCCTTTTTTTTTTGGGTTTTCCTTCATGTGCCAGCTTAGTTGACATCTCTATATCTGTGTGTTATTTGGTTATTCATGCCGTTATGGTGTCATATTGTTATGCTATTTCCTGCCGTTCTAGTGTCTCTTTTAAGCAGATAAATGAACTTGCAGGTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAGGTTCTTTCACATATGTTCTTGAAATTAATATTAGATCCAAGGTTCACTAACTTCAAATCCGGAGAAAAATTTCAGTTGCCTATAATCTTATAGATAAAATAAAAATGCGGAACAAAATGGAAACTGAAGGGAAGCCTAAAAGATCTCGTCTTGACAGTATCTTTTCTTCTCATTGCAGGCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCT</genome_strand>
        <mrna_strand>TCAGATACATTGATGTTTTTTTATCCAACAAATATGTCTCACTATATTTGGTGAATTTTAGATTCAAGACGAGATGGCCCACTGTTTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATTAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAG..................................................................................................................................................................................GCCATTCAAGATATGGATATAAACCGGTTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTTAATATAAAATGCGAGATCTCAAATGATCCTACTTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0YudIx/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331305" ref_strand="+" ref_description="SGN-U331305        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gggttgctaaaaaaggcagaacgtcagttggcagaccatcaactcttgctcttctcccctccagcgtcaacaacaattcaactagttctgctgctaagaagaagcaaaaacgaaagagattatcaagattatgctgattgcttgtggaagatggacaaatttctcatatggaactttgcatgggtgccaacttttttcccggcagctacagccctggccgtttcatttgccaatgactattccgcgcttgattccttgatcatatcccatcagttggttccttgaatacctaatattcccatttggtgctgttttaaccaacatgatgtcgccaccaaccagacagtcagatcaatgccaatcctcgtgtatcaagcaattgactggtttcaagaaatgaccagagaaatttgctcatccagcaagaaacttaccggtgaatgtgaaatcagagcttcgttggtgtagatgcaaggtgattttgtggctacatcagaaattatctgcgagtatgttctcttctagcttgagattttagaaaaattgacctttgaacccggtatgttttcacttgtcctaatcatctacacaaatctggaagcagaaattttgtagaaaatgaatgttcatatggatgattctcttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-1z4Dz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="14288" stop="13040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13988" g_stop="13340" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-U331305" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13988" e_stop="13340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTGCTAAAAAAGGCAGAACGTCAGTTGGCAGACCATCAACTCTTGCTCTTCTCCCCTCCAGCGTCAACAACAATTCAACTAGTTCTGCTGCTAAGAAGAAGCAAAAACGAAAGAGATTATCAAGATTATGCTGATTGCTTGTGGAAGATGGACAAATTTCTCATATGGAACTTTGCATGGGTGCCAACTTTTTTCCCGGCAGCTACAGCCCTGGCCGTTTCATTTGCCAATGACTATTCCGCGCTTGATTCCTTGATCATATCCCATCAGTTGGTTCCCTGAATACCTAATATTCCCATTTGGTGCTGTTTTAACCAACATGATGTCGCCACCAACCAGACAGTCAGATCAATGCCAATCCTCGTGTATCAAGCAATTGACTGGTTTCAAGAAATGACCAGAGAAATTTGCTCATCCAGCAAGAAACTTACCGGTGAATGTGAAATCAGAGCTTCGTTGGTGTAGATGCAAGGTGATTTTGTGGCTACATCAGAAATTATCTGCGAGTATGTTCTCTTCTAGCTTGAGATTTTAGAAAAATTGACCTTTGAACCCGGTATGTTTTCACTTGTCCTAATCATCTACACAAATCTGGAAGCAGAAATTTTGTAGAAAATGAATGTTCATATGGATGATTCTCTTATTG</genome_strand>
        <mrna_strand>GGGTTGCTAAAAAAGGCAGAACGTCAGTTGGCAGACCATCAACTCTTGCTCTTCTCCCCTCCAGCGTCAACAACAATTCAACTAGTTCTGCTGCTAAGAAGAAGCAAAAACGAAAGAGATTATCAAGATTATGCTGATTGCTTGTGGAAGATGGACAAATTTCTCATATGGAACTTTGCATGGGTGCCAACTTTTTTCCCGGCAGCTACAGCCCTGGCCGTTTCATTTGCCAATGACTATTCCGCGCTTGATTCCTTGATCATATCCCATCAGTTGGTTCCTTGAATACCTAATATTCCCATTTGGTGCTGTTTTAACCAACATGATGTCGCCACCAACCAGACAGTCAGATCAATGCCAATCCTCGTGTATCAAGCAATTGACTGGTTTCAAGAAATGACCAGAGAAATTTGCTCATCCAGCAAGAAACTTACCGGTGAATGTGAAATCAGAGCTTCGTTGGTGTAGATGCAAGGTGATTTTGTGGCTACATCAGAAATTATCTGCGAGTATGTTCTCTTCTAGCTTGAGATTTTAGAAAAATTGACCTTTGAACCCGGTATGTTTTCACTTGTCCTAATCATCTACACAAATCTGGAAGCAGAAATTTTGTAGAAAATGAATGTTCATATGGATGATTCTCTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0YudIx/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342292" ref_strand="+" ref_description="SGN-U342292        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | SWIM zinc finger family protein, contains Pfam domain PF04434: SWIM zinc finger | chr1:22312237-22315015 REVERSE | Aliases: F8A5.10, F8A5_10(evalue: 6e-98, score=353) genbank/nr: gi|42571927|ref|NP_974054.1| SWIM zinc finger family protein [Arabidopsis thaliana] (evalue: 4e-96, score=353)">
      <seq>aaaaaagaagaagaaagaatctttaatactctaataatttgcttacttcaccacaagaacaagaattcttcttctgggaatattttagaagatggagatagttgagtccattcctgatcttgccgtgcaagatccgcctggtgaagacttctcggcatctgatttgagttggaccaaattcggaactgaagaacgacatgatgatgttgcccttattcattatgatcgagttgatgcctttatcattggagagtgttgtaatgtggaattcccaacaaggtttcacattgagaggggaaggaaaagaagcaaaggcagtttaaaggagtacaagcctgatgaatatttggagcacaggctgtattggtgttcctttggcccagaaaattacggagaaggtggtggtattttaccaagtcgacgatataggcttaacactcgaaaccgtgccgctagaccccagtcaatgaggggctgcacttgtcattttatagtgaagcgtttgtatgcccgtccatctcttgcacttcttatatataacaacaggcgtcatgttaacaagtctggttttgtatgccatgggccacttgatagagatgctattggnccntggtgcaaaaaatataccttacatttgcaatgagattcaacagcaaactatgtctatgatctatcttggcattcccgaggagaatgttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-1z4Dz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="21211" stop="15535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20911" g_stop="20834" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20833" i_stop="18234" i_length="2600">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18233" g_stop="17952" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="360" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17951" i_stop="16176" i_length="1776">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16175" g_stop="15835" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="702" r_length="342" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-U342292" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20911" e_stop="20834"/>
          <exon e_start="18233" e_stop="17952"/>
          <exon e_start="16175" e_stop="15835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAAGAAGAAAGAATCTTTAATACTCTAATAATTTGCTTACTTCACCACAAGAACAAGAATTCTTCTTCTGGGGTCAGTAAAAATACAATCTTTTTTGGTTCTTTAATGTTAAATATCATTGTTTTTATGTTATGAACTCTGGCTATGTGAGTTGGTTTTGCTAAAAGGGTCTGTCCCAAGATGATGAATAGTTGTTCAGCGTAAAAATTAGTGCAAGTATAGTGAACCCTTTTGAGTATACTGATTAAAATGGAATGAGTTTGGTGGTTTCATGTAGCTGATTTTAGCTAATTTGTGGGGGCTGGGGGTTAAAGGTTTAATTGTTGTTTGTTTGTTGATTTTGTTGTGTTTTTTTGGCTGTATGCTGAAATGGATTGTTCTTTATGTTGGTTTCAGTATTTTGTGTGTTAATTTCCTCTTGTTTTGTTGAAAAGGTTCAATTTTGGTGCCTGGGTGGAGCTCAAATATGTTTCTTTTTGTGGTGTATCTGCTGTATGGAAATATTGCTTTTTTAGAACGTTGGACCTTGCGCCTAGTATTAGAACAGGACCAATCGCAATTATTGTTTACCGATGATGGGTCCTTGATTAAATTACCCATGCACTAGATGTTCAGCCGGGGCGTGAGGTGGGTGTTGAAGAGTCTCACATCGGATGAAAAAGGGTGGCTTGGGCTATCCGCTTTTGGCCATGAGTTAGGCTCATTGTTTTTTTGTTCTGAACTCTGCCCATGTTAGCTATTTTTGCGAAATTGAGTCAGTCCTGAGATGTTGCAGTAGATGTTCAGCGTGAAAATTAGTGCAAGTTTAATGAATCATTTTAAATACTGAATAAAATGGAATAGGTACAGAGGGCTTTGTGTAAGCTGATTTTAACTAATTTTTTGGGGGTTTGGGGTTTGATTGTGGTTCATTGGTTGATTGTTGTGATTTTTTATTTTGTTCTGTTTTCGGCTGTATGCTAAAACGAATTGTCCCTAATGTTGCCTTTAACATTTTCTGGGTCAGTTTCCTTGTTCTTTCTATATTTTTCTTCTTCTTTTTGTGGTGACTTGGTGAAGACGAAGTAAGATATTTTTGTGGGGTTTTTGCTGTATGTAGATACTCTCCTTTGGTTGTAAACTGTAAATATTGTTTTTTAGAACATTGTTTTTTGTTCTGAACTCTGTCTATTTGAGTTAGTTTGCTAAATAGATTCGGTTCCGGGATGTTGCAGTAGATGTCAACATAAAGATAGTGTAAGTATGATGAATCCTTTTAAATACTGAATAAAATGGAATGGGCAGAGAGTCTTCATGTAGTTGATCTTTACGAATATTCGGGATTGAGGTGTAATTTGACTTGTTGATAGATATCTTGCAGTTGTGATTGAATTTGCTCTGTTTTCACTTGTATGCAAACCAAATGTTGCCATGAACATTTTCTGTCAGTTTTTGTTCTTTTTGTTCTGTTATTTTCTCCCCTTTGCTGTATGTAAATACTCTGTTTTCTTTTCACCTCTTCTTTCAATATTACTCATCATATAAATTTTTGGGCTAGGTGGCAGAAGATATGTTTTACCTATTTTGACCTAGTCATTTGATAACCATTTCCCCTCTAATTTGTTGAAGGCCTAGTTTTCCCTAAAAGATAAATTAATTGATATTGGAATGAAATGGTTTGGATAGTGCTGAATGAATTAGAGGATTCATGTAGTGGACCTTTGCTAATTTGGCATTGAGGGTAGTTGATTGATTTAGTTTGGACTGGGGAAGGAAGGAGTGGCTGAGAATCCGAGGTGGAGAAGCACCGAAAGGTCGACACTGTCATTTTCAGTTTCTTCAACTTAAATGACGGTGACAACCTCTTGCTTTTTAGGAGCCAAAAGATTTTGTCTTTCTAACCGTTTTCTTCTCCTTCCAATGTCAGGGGCTCAGGTCATGCTTTTCTTATCATATCTTATCGTTGGTCATTTGTCAAGATTTCAAGAGAACTTGAACTGTTGATGACCTGATGTAATGCTAAAACTGCCATCAATCTTCCAGCTTGAGCTACATTTTCGTCGATATATTATTGTTTTTAGTGTCTATAATTGTCCAAATACATGTCTTTCTATTTGTTTTACCTCTGATGCTTGTTATTATCTAGTTCTAGCCTACATCATATACCTTAGCGACTAATTTTGTGAAGTCTATTGTACTTATTGAAAGTGTAATAGCCTATAAAGAGGTTCAGCTTCATATTAAGGCAAGTTTATGTGGACTTGTCGGTTGATTAAGCTGCTGCAAAATCAAATCAAGATTTTCCTAGCCCTCTTTTCATTCACCTCTATTGATAAGTCACTTTCCCATGTTTTATTATATATTTAGGATGGGGGATGCTATGTTGCCTTCTGTCTGTTTATGTTTGTCTGCTTAAAGTTATGAATTCTAACCACTTATGTCATATTCACCTATTAGCAAACCCCAACATAGTCGGGAATTTGAGGTGTAGATAATTGAAATGTTTTCTTCTCCTTCTCGAACCTCTGGAAGTTATTGAGTCTGGTGCTTTCAAATGAAAATGCATGCAGATTATGTAGGCCAATGGAGGCAGCTAGGCACCTGCTATCTTTTTTTTAATTGATTTCCTTCTCGAAGTTGATTGTCTGTTGCTAGTTTGACTGCTTTAGTAACTTGCCTTGCTAATTATTCAGAATATTTTAGAAGATGGAGATAGTTGAGTCCATTCCTGATCTTGCCGTGCAAGATCCGCCTGGTGAAGACTTCTCGGCATCTGATTTGAGTTGGACCAAATTCGGAACTGAAGAACGACATGATGATGTTGCCCTTATTCATTATGATCGAGTTGATGCCTTTATCATTGGAGAGTGTTGTAATGTGGAATTCCCAACAAGGTTTCACATTGAGAGGGGAAGGAAAAGAAGCAAAGGCAGTTTAAAGGAGTACAAGCCTGATGAATATTTGGAGCACAGGCTGTAAGTGCTTCAACCATTTAAGGATATATCATTTGATAACTTCTGGCCTTCTTTCTTTTTTGAAATGAATAATGTGGGTCATGATGACCACTTTCTGTTCTATTCGTCTTCACTAGTAAACTATGTACTTGTTTGAATTTTTGCTTACTTGATCTCTTGGTGGATTGACTCTGGAATGAATTTTCTGGGCAAATAAATCTGAATGTAGAGGATTGTTTGTAAATGTTTTAACTCTTGGAGATGGGGTGGGGGGTCGAAAGGGCTAACTATGAAGACTTCACTTAATTTAACCGATGGTGGATGAAGAAATACTCGGCTTCCTCAGGAGCATTTGTTTTGTATTAGTAAGTTTAAACTTCTTAAAATTTGTTTTATATAACAAAGTTATATATCCGACATATGTTGCTAAATTTTCAATTTCATGTGATTGTTTTAAAGGTTGTATCATAATCCTGTATCAGCCATTCATGTATTTAGACGTTGTTGGACTTGATTAAGTCTCCATCTAGTCAAAGATGATCCGAAATTTGTAAATCTTCTGCATCTTGTGGAAATCCAGTGTCAGAAAGTGGTACCAAGAAGTACTCTATTAGAGCACACATTTTTTAACCAAAGACTGTCTCTGCCTAACCTACAAAATCAAAATCTTTAAGGACCACAAGTACAATTTTGGTAACATCTGCTTTTAACAAAATATGTATGCTGTTGTTTCCCTCAATACATCTTTTATTCCTTTCAAACGAAATAGTTCACAAGATGCATACAGGGCTGGGCATCCGGATCTTCTTCATCTTCTTCTCTACCTTCTGATGCTGCCAGCTTCTCAGAACATGTCTGGCTGCCATGTGAGAATAGATGACTAATAGATTCCACTTAAATCCCGCAAAAGAAACACATGCTGCAGATGATGTGGCCCCTTCTTTGTAAGTTTACCCGTGTCAAGGATTGCATTTAAAGCAGCATTGTCCATCTAAAGCATGCAAATGTGGTGTTTTCCACAATATTAAAATGGCCAATGTGTTCCCAGTCAGCATCTTTGTTTCTGGATAAAATTGTACAACTCCTTGCTGAAACTTTTTCGTCCTTGCTTGGCAACCTATTGGAGAATCTTTTCTGTTAACATCCAGGGTATGGGTTCCAATAGATTTAGTTGTTGACTAATATATTCCAATTTCCAATCATTAAAATTCCTTCTAATTGCTAACCAATTTCAGGATCACAACAGCAACCGTAGAATGACTGTTAACAGCTTAACTGTACAACACAGGATATTTCTTCCTTAACATCCCATCACCAACCCAAAGTCTGTTTAGAACTTAATAGTGGATCCGTATATCCAATTTTTTATTTGAAGTTCTGTTGTAGTTCTATCCAGAGTTTTGCTGATATACGTCCAAACAACCCATTTTGTGGGCATTGACAGCATGTTGAACTGCAAGAGTCTTCTTTTTTACCTTATTTAGTACTTATACTTACCATTTCGACCAACATGTTATTCCTTTGCCCCATGATTATTTACCCATATTTGACTTTTTATAGTCAAACTAGATCAAAGTCATCTTAGGGCTAAATTTTTAATGGCTAAGTACAAAGCTCATAATATGTACTATCGCAAGAAGGTTTTAACTTTCTACCACAAGAAAATATATAAAACATCTGCTTTAGGGAAATCGTATATGACTTCTTAGGGACAAAATTATGGGAATAAGGGAGTAACACCTAGTTGTAGCTGTATGAAAAGTTTCTCCTTCATATCTTGTCATGCTGTTATTTCAGGTATTGGTGTTCCTTTGGCCCAGAAAATTACGGAGAAGGTGGTGGTATTTTACCAAGTCGACGATATAGGCTTAACACTCGAAACCGTGCCGCTAGACCCCAGTCAATGAGGGGCTGCACTTGTCATTTTATAGTGAAGCGTTTGTATGCCCGTCCATCTCTTGCACTTCTTATATATAACAACAGGCGTCATGTTAACAAGTCTGGTTTTGTATGCCATGGGCCACTTGATAGAGATGCTATTGG-CCCTGGTGCAAAAAATATACCTTACATTTGCAATGAGATTCAACAGCAAACTATGTCTATGATCTATCTTGGCATTCCCGAGGAGAATGTTTTAG</genome_strand>
        <mrna_strand>AAAAAAGAAGAAGAAAGAATCTTTAATACTCTAATAATTTGCTTACTTCACCACAAGAACAAGAATTCTTCTTCTGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTTTAGAAGATGGAGATAGTTGAGTCCATTCCTGATCTTGCCGTGCAAGATCCGCCTGGTGAAGACTTCTCGGCATCTGATTTGAGTTGGACCAAATTCGGAACTGAAGAACGACATGATGATGTTGCCCTTATTCATTATGATCGAGTTGATGCCTTTATCATTGGAGAGTGTTGTAATGTGGAATTCCCAACAAGGTTTCACATTGAGAGGGGAAGGAAAAGAAGCAAAGGCAGTTTAAAGGAGTACAAGCCTGATGAATATTTGGAGCACAGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGGTGTTCCTTTGGCCCAGAAAATTACGGAGAAGGTGGTGGTATTTTACCAAGTCGACGATATAGGCTTAACACTCGAAACCGTGCCGCTAGACCCCAGTCAATGAGGGGCTGCACTTGTCATTTTATAGTGAAGCGTTTGTATGCCCGTCCATCTCTTGCACTTCTTATATATAACAACAGGCGTCATGTTAACAAGTCTGGTTTTGTATGCCATGGGCCACTTGATAGAGATGCTATTGGNCCNTGGTGCAAAAAATATACCTTACATTTGCAATGAGATTCAACAGCAAACTATGTCTATGATCTATCTTGGCATTCCCGAGGAGAATGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0YudIx/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320165" ref_strand="+" ref_description="SGN-U320165        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | L-allo-threonine aldolase-related, similar to L-allo-threonine aldolase (EC 4.1.2.-) (L-allo-TA) (L-allo-threonine acetaldehyde-lyase) (SP:O07051) {Aeromonas jandaei}; similar to ESTs gb:R30517, gb:T42772, gb:R90493, and gb:R90493 | chr1:2743813-2746698 REVERSE | Aliases: None(evalue: 5e-148, score=521) genbank/nr: L-allo-threonine(evalue: 0, score=697)">
      <seq>ctttgataaaatccaaaaaattaaaataaatttgcatgcatgtaattaaatgtgcttatttgctgtctcatactcagacctaacagttgagtgaattgtctctctagcattgcttgaattgaagaatcagagaagagaagcttataaattcagtgaagatggtggtaagaactgtggatcttcgctcagacaccgtcactagaccaactgaagccatgcggaacgcaatggcgaatgctgaagtggatgatgatgtcttaggttatgatccaacagcccaacgccttgaagcagagatggcaaggataacgggcaaggaagcaggattatttgttccttctggcactatgggtaaccttatcagtgtgctgactcattgccaaatcaggggcagtgagattattctcggtgattattcccatatccatatttatgaaaatggaggcatttccacccttggaggtgttcatccaaggacagtgaagaacaatgaagatggtacgatggatcttgatctgattgaagctgcgattcgagatcctagctttgaaatatgttacccaaccactaggctgatctgcttggagaattcgcaagctcactcagggggcagatgcctttctgcggagtacacagacaaagttggagagctagcaaagaagtatggtctgaagctccacattgatggagctcgtatattcaatgcatcagttgcacttggagtgcctgttcataggcttgtacaggcagctgattcagtttcggtatgcttatcaaaaggtcttggtgctccagttggatctgtgattgttggttcgaagagcttcattgccagggccaaaatcctgaggaagactctaggcggtggaatgaggcaaattggagtcctttgcgctgctgcttttaccgctttacaagagaatcttgttaagctggaaggagatcacagaaaggctaagattttggctgcggaacttaacaaaatcaaagggcttaaagttgatgttgccactgtagagaccaacattgtatattgcgacatactgaaggggtcaaggatcagtgaagcagagttggtcaagactttggaacaatatggtttacttatactaccagaaggcccactgagagtcagatttgttctacaccaccagatttcagaaagtgatgtacactatgcagtgtcttgcattcagcgagctttagcaggagtggctgaagaaaatggtgacaagtaaccggataaatcggtttcagacatgatctctttctgttagaaactgttccaaatgtttacatgggagagagaccagtttcattttcaaattttagtcaaatctttaaacttctcatttcatgtccttttaatgatcaaaagactttgtttgttcttcatatgtttgttgttggactagtttgtcctaatgatttagtaagaaatgaatgttggctcaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-1z4Dz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="28437" stop="22100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28137" g_stop="28052" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28051" i_stop="27615" i_length="437">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27614" g_stop="27553" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="148" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27552" i_stop="26367" i_length="1186">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26366" g_stop="25914" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="601" r_length="453" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25913" i_stop="25477" i_length="437">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25476" g_stop="25365" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="713" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25364" i_stop="24848" i_length="517">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24847" g_stop="24797" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="764" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24796" i_stop="24580" i_length="217">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.532" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24579" g_stop="24508" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="836" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24507" i_stop="24436" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24435" g_stop="24303" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="837" r_stop="969" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24302" i_stop="24228" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24227" g_stop="24169" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="970" r_stop="1028" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="24168" i_stop="23520" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="23519" g_stop="23419" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1029" r_stop="1129" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="23418" i_stop="22813" i_length="606">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="22812" g_stop="22746" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1130" r_stop="1196" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="22745" i_stop="22660" i_length="86">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="22659" g_stop="22403" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1197" r_stop="1453" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1454" polyA_stop="1480"/>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-U320165" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1453</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28137" e_stop="28052"/>
          <exon e_start="27614" e_stop="27553"/>
          <exon e_start="26366" e_stop="25914"/>
          <exon e_start="25476" e_stop="25365"/>
          <exon e_start="24847" e_stop="24797"/>
          <exon e_start="24579" e_stop="24508"/>
          <exon e_start="24435" e_stop="24303"/>
          <exon e_start="24227" e_stop="24169"/>
          <exon e_start="23519" e_stop="23419"/>
          <exon e_start="22812" e_stop="22746"/>
          <exon e_start="22659" e_stop="22403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGATAAAATCCAAAAAATTAAAATAAATTTGCATGCATGTAATTAAATGTGCTTATTTGCTGTCTCATACTCAGACCTAACAGGTGTTTTGATGATGTTTTTTGTTCATGTGATTGTGCTTGTGTTTCACTGTTTTTTTCCCTTTTTTTTGTTGTTTTGTATCACTGTAATCAGTCCAAAATTTGGTATCTTTAAAGTTTTCAGCTTTTTGTGATTGTTGGGGTTGTGGGGTTTGTTTTTTTAGGAAAAAGATTGAATTTTTATGCAAAATTCCAAATCTTGATTACTGAGCTTTGTTAGTAATTGTTTGTATGTATGTGTAGTAGTGCTATTTCTCTTTGATTCTTGAAATTTGTGGGTTAGAAGACAGACACCCATTGAGTTGGGAAGTGAAAAAAAATGTAGATTTTTTTTTTGTTGATTTTGGGTTTTTTATGCTTCTTTGTATGTGATTTTCTTGTTTGTTGAAAGGATTTGATGTTTTTGTTGTGAGGATTAACTTGTGGAATTTGGTTTGCAGTTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAAGTATGAACTTTTTTTCATATCTCTATTTACTTTTAGTATTTATGTTTGTGTTAGGCCTGTATAATGTTCTGAGTATCTGAAAGGGTTTTGAAATGTAATACTACCTCCATCTGTTCTCTTTTCGAGATTTAAACTATGTGAACATTGACCGACATTTTAAAATGTTCTTATTTTCGTTAGAATTGCAACTGATGATTGTTTTCATATAGTATCTGAATATCAAAATTTTAATTTTAAAAATATACACAATGTAATCCCGCAAGTGGAATGTGGGGAGGGTAGATAGAGTCCATAGAGACATTGTTTCTGATAGACCCTATATTGAGTTGATTTAATCTAATTTAGCTTCGAAGATTAGTCAATTTGACCCTCGAAAAGGGAAAATCGACACTTACTTTGCAATCGAGGGAGTACTAATATATAATGTCACATATTCTTGTAAGATTTTGGGCTCTCTATTCTTTAACTTAAGGATTTGAGTTAAATGCGCATATTGATGGTGTGACCTATCTGTATACATCATTTATCTTTCTTTTTTTTTTTTTTATGTAAAGAGAATGAAACTTAGTTTTATCTTGCTAATCTCAGAGAAGGTTACTCACACCAACATGGTTTATTTATTTAGTTACCAGAGAGACTTTTTTGTGTGTGGGAATTTAAAGAATATTAGGGGTGTGCTTCCACACTATTCAAGAAAGAATGAGCATTTCCAGTTTATCTAGTTTGTAGACGATTTTAGCCAACTCCAATTAGTTTGGGATTGAGGCTTAGTGAGTGACAGTTGGTTGTAGAATATTCTTTTTGGTGGCAAAGCCAGGATTTTCCAGCAAAGGGGTGTCTAGTGTCACTCCTCGAACGAGGGTGTCTCTGCTACTAATTCCTTTACCATTTGTAAACAAATTTCTTCTTGAGACAGGTTTACTTATTGCATAGTGAGTGATAAAACTCTCTTTTTGTTAATTGGTGACGTAGTTCATCCACCATATTGTTTGAGAGCCTATAGGTCTGTTTCCTGAAATTCCAGCTAATAGTCTTTTTTGTCGGGTGTCGATGTTTTGCTGCTGAAAAAGCTGTTTGCAATTTGTTTTATTTTTCTTACATGGGCATACTAAAAGCTAGACAGGTGGCCATTGAAGAATGAAATTATTAATTTATATGGGACATGTTGATTGTTTCTGTTTTCTAGTTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCAGTAAGAATATTCTCTCACTATTAACTCTTTTTACGGCAACCCTCATAATCATGCTTTATCTGGTAATGCTATTGGATTTGTGCTAGTTTTTGTTAGAGCTGTATATATTTAGTATATCGTCGACCATACAACAACAACTATGCTTCAGTTCCAAGCAAGTGGGGATCGGTAATATGAATCTTCACCGACCATGTCACTTTGTTTAAGCCCATATCAGTCCAATATTTATAAAATCATTAGTTCTTCTTGCATTAGAAGTTCTGTACATGTTAATTGGCATAAATCTCTAGCAAGTTTTAAAGACTCCTAGCAAACATTAGCTATAAACCATGTTTAAATTTTATATAGATCTTTTTCTTCACATTGCTTTAGTCAGTTTTGAGTATTGTCTCTCTTTATAATGCAAGTTCTTAACCAACAACACTCTATGAGTGCAGCTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTTGTGAGTACACAATTTTTTGACTTGTTAGGAAACAACCTGTTGTTTGGAGTCTGTCAATAATGCTACCTTGATTTGGATGGATTTTCAAATTAGAGTGATTTTCAGTAGTTTCTATAAAGTATATGCTTATAATGCTATATGAAACAAGTAGCACCTTTGTGAATTGAGATCTCATGGGACTTGAAAGATAAATAAAGAGCTAAATTTGATCTAGGATAGGTTAAAATGATAAATATTGGATTCAAATAAATGACGAATGTGCAACATAGCTAGGTGCACATTTTTATTCTAGACGCATATTTGTGCACAATAGCTTAAGTGTCTGCTTTGTCTTTTGACAGATTTAATAGTCATCGGTTCTTTTATATGGACATATGACTTGATGGAATTTTGAGTTTTATAGGAGTCTAAATGTAGAGTTCTCCATAATTACTTTTAAGGGCTTCTACTTTTGTCTTTCTGTATGCCTTCTTTATTTTATGTTCATTCTGATTAACTGGGTTAATCTGTCATTTAGGCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCGGTAAGTGATATTATCCCCAAAAATCTAGATTACCCTTTCTCTTTATTGTCTCTAGTTATTTCTGATCCACTTATTGAGTAACGAAACAAATACATTTTATTCATAACATGGTATATTAAAGGAGAAACAAAGAGATGTTTTATGTTTAGCTTGTAATGTATGACAAGGTTTTTAGTGTATTTTTCCCGAATTTCTGCTCATTTAAGAGTCTGTGCAGGTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTGCCAGGGTATGTATGCTTTTGCATAAAAAAAATTATTTGTTCCTTGCCAAATAGCTCATTGTTTCCTTCGTTTTTTAGGCCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAGGCTAAGATTTTGGCTGGTAATATTTTCTCCATTTGATAAGTTTATTAACTAACTCTTTTCATTTGCCTAATGATTACCATTTACTTCTCAGCGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATTGTAAGTTGACTCATCAGAAATGATGCTTAATTTTCTTTTAATTTAAAAGATGATGCTTACTTTTGAGTTTCTTAACAGCTGATACGTGTTTCCGGAAATATGTGCAATTCAGTTAGATGAACCATTACCAAGATTCTGACTGAACCGGCATTTCTGCAAGAGGCTGATTCAAGCCATGGAAACAGCCTCTTGTAGAAAGCGGGGTAAGGCTGCGTATGATGTACCTTTGTCGTCCTCCCCTTCCCGAACCCCATGCATAGTGGAAGCTTTAGTGCACTGGGCTGCCCTTGATACATTACTGCTCTGACATCGATTAAAAAGCCAGCCCATCTAACCCCCTCTCCTCATAGACAACTACCTCACCTTGCTCGTAGCCCATCGGAGTTCAGACTTAATCCCCTAAAGAATAGATCAATCCAGCGATACAGAACTTCTCATGAGCCAGTTATCATGTTTCATTAACTCTTTTACATTCGGAAAACAACCTCCATAAAGCTGAGATCGAATTGCAAGAAGGAAATTTGGCTTCTGGATAGGGATGTCTTTCCTCTGGAAGGAATCTCTCCTCTCTAGTAGTCCACAGAGGGAAACCCCCATACCAATGTAAAATTTTCTTTCAGTTCCTTACGATTCCTTTTGTTATCATCAGGTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAGGTACGCTTGCCTTTTTGTTCTTCAAATCTCCATCTAAGCACAGTTACACGTTTCCCTTGAGCGTTTATGCAGCTAAGCTCGTTTAGAGTTCAAGTAGTGAGAAATTACATAACATGCGTGTTCAAGAGGTACAAACACTTGAACTATCACATCCATAGTTGCACGAGATGTTGATGCATGTAAATATCTTTTCCTTTCTTGATGACAATGTTTAGTATAGTTGATGTTTCAAAAATGATGTTGAAGCAAACACTACTTTTGGAGGATTTGACATGCATCCACTGACTGACTTTTTTGAAGAATCCGTGCAATATAGTGTATAATTGAGATTGTTAGCATTTAATGATAGGCTCTTGTAGCGCCTTAACTGGTTTTTCAACTCAAAATCTGCTAGTAGTGCTCAAACTTGCATTTGTTGGTAAGATAGAAGATCGACAACGCTACAATATTTTTTGCCCCTAGTTTTGATATGTTTCAGAAGATTTGGCTGTCCATTCTCCTTTAATCGACTTATTTATGGAAAAATGCAAGAACTCCAAATATTGGTATCCTACAGCTCGTAAGAAACCTTCTGAGACTTAGAAATGTATGCCAATTCCACTGCAGAGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAGGTAAGAAGTTAAATAAGTCGAAGCATCTACGTTCACAAATGATCACCCACTCTTCGCTTACATTTTCTCTCGTTAAATATCTGCAGCGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGAATGTTGGCTC</genome_strand>
        <mrna_strand>CTTTGATAAAATCCAAAAAATTAAAATAAATTTGCATGCATGTAATTAAATGTGCTTATTTGCTGTCTCATACTCAGACCTAACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCG.........................................................................................................................................................................................................................GTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTGCCAGG........................................................................GCCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAGGCTAAGATTTTGGCTG...........................................................................CGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAG......................................................................................CGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGAATGTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0YudIx/lycopersicum_combined_unigene_seqs" ref_id="SGN-U338416" ref_strand="+" ref_description="SGN-U338416        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47900688|gb|AAT39287.1| putative polyprotein [Solanum demissum] (evalue: 3e-23, score=112)">
      <seq>aacggtaaatccagacctatgaggaggaaatgcagtaatgtaagatcgtatttgacaaatggtaccattaatgttgagtatgtcaaatcttgtgataatcttgcagatcctcttacgaaggtcttaacaagagaaaaggtctggagcacatcgagggggataggattgaagcctacaaatccttcagtcatatatgaggaaactcaacctgnggaatagagatcctataaccaggttcaaagggaaaaactaatcatatgatgacttgttatgaaaaatacactattttttccctccctatgatgtgagtgcatttgttcctatagtttgtgaaggttgagttgataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-1z4Dz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="33405" stop="32455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33105" g_stop="32754" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-U338416" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33105" e_stop="32754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTAAATTCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAGTCTTGCAGATCCTCTTACAAAGGCCTTAACAAGAGAAAAGGTTTGGAGCACATCGAGGGGGATGGGATTGAAGCCTACAAATTCTTAAGTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTCCCCTCCCTATGATGTGAGTGCATTATTTCCTGTAGTTTGTGAAGGTTGAGTTGATAAAAC</genome_strand>
        <mrna_strand>AACGGTAAATCCAGACCTATGAGGAGGAAATGCAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGTCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATAGGATTGAAGCCTACAAATCCTTCAGTCATATATGAGGAAACTCAACCTGNGGAATAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTATGAAAAATACACTATTTTTT-CCCTCCCTATGATGTGAGTGCATTTGTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0YudIx/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320763" ref_strand="+" ref_description="SGN-U320763        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | myb family transcription factor, contains Pfam profile: PF00249 myb-like DNA-binding domain | chr1:3161843-3165362 FORWARD | Aliases: F21M12.15, F21M12_15(evalue: 0, score=1037) genbank/nr: gi|50923307|ref|XP_472014.1| OSJNBa0020I02.14 [Oryza sativa (japonica cultivar-group)] >gi|38346500|emb|CAD40345.2| OSJNBa0020I02.14 [Oryza sativa (japonica cultivar-group)] (evalue: 0, score=1047)">
      <seq>caggaattcggcacgaggctcatcagcttcggagctaaaaaccgattccgaaatatcttctcgtcggagcggaaaaacgccgccgcggcctgaatctactctaccggagaccgtcatttctcgccggcgtatagatttcagctcatttacaggcaaaatctgaggtatacttatccaaaaccctagatttctcggagtctcccttgggagactgaaatagttagcaaacatgaggattatgataaagggaggagtatggaagaacacggaggatgagattctaaaggcggcggtgatgaagtatgggaagaatcagtgggctcgtatttcttctttacttgttcgtaaatctgctaagcagtgtaaagctcgctggtatgaatggctcgatccttcaattaagaagactgaatggactagagaggaggatgaaaaactacttcaccttgcaaaactcatgcctacccaatggaggacaattgcgccaatcgttggccgtacaccatcacaatgccttgaacgttatgagaagcttctcgatgcagcatgtactaaggatgagaactatgatcctaatgatgatccaagaaaattgaagcccggagagattgatcctaacccggaatcaaagcctgctcgtcctgatcctgttgatatggatgaggacgagaaagaaatgctttctgaagcacgggctaggttggccaacacaagaggcaagaaggctaaaaggaaagccagagaaaagcagcttgaagaggcgcggaggcttgcttctttacagaagaggagagaactgaaggctgctggaatagatgtccgtcaaaggaagagaaaaaggagaggtattgattacaatgctgaaattccctttgaaaagaagcctcctccaggtttctatgatgtcactgaggaagaccgtccagttgatcaacctaagtttccaactaccattgaggaactagaaggtgaaaggagagtcgataaggaagctcgcctaaggaagcaggatattgcgaggaacaaaattgcagagagacaggatgcccctacatccatattgcatgcgaacaaacttaatgatccagaagcagtgaggaagaggtcgaaactgaatcttccagcaccacagattccagatcatgaattggaggccatagcaaagataggtattgccagtgatctaattgggggagatgaactgtccgaagggaatgctgcaacgcgtgctcttcttgcaaattatgcccagacaccacaacatgctatgactcctatgcgaacacctcaaagaaccccttcaactaagcaagacgccattatgatggaagcagaaaatcaacgaagattgactcaatctcaaacaccattacttggaggagataatcctttgttgcacccctcagatttctcgggtgtcactcctaagaaaagggaggttcaaactccaaacccacttttaactccttcagcgactcctggagccacgagccttactcctagaattggcatgacaccttcgagagattcttatgggatgacacccaaaggaactcctatgagggacgagctacgcattaatgaagaaatggatatgcatagtaatgctaaactggggcaatttaattcaaaaaaagaattgctttctggtttgaaaagccttcctcagcccaagaatgagtaccagattgtcatccaacaacctcctgaagaaaatgaagaaccagaagagaagatcgaagaagacatgtctgataggattgccagggagaaggctgaagaagaagcaaagcgacaagcattactccgtaaaaggtcaaaagtattgcaaagggagctccctagacctcccattgcttctctagaactaataaagagttccttgatgagagctgatgaggacaagagctcctttgttcctcctacactaattgagcaggctgatgaaatgattagaaaggaacttgtgtccttgctagaacatgataataccaagtaccctctagatgagaagccagagaaggagaagaaaaagggggtcaagcgaaaaattgttgctgaacctgctattgaggattttgaggaagatgaattaaaagaggccgatggattgatcaaggatgaggctcactttcttcgtgtggcaatgggacatgagagtgaatctcttgatgaatttgtcgaaatacacaaagcaactttgaatgatatcatgtactttcctacccgaaatgcttatggtctctcaagtgttgctggaaacatggaaaagcttgctgctttgcagaacgagtttgagaatgtgaagaaaaaaatggacgatgatactaagaaagcaacaaaacttgagcaaaagatcaaagttcttactaatggatatcagatgcgagctggaaagctttggtcacagatagagtcaaccttcaagaaaatggacacagcgggtacagagcttgaatgcttccgagcattacaaaaacaagagcagctagcagcatcccacaggatcaacaatatgtgggaagaagttcagaagcaaaaggagcttgagcgtactttacagaaaaggtacggtgacctcatagcagatacgcaaaagatccagcatctcatggatgagtatagaatacaagatcaaatgcaggaagaagttgcagcaaaaaatcgtgctcttgagttggcgaaggcagaaatggcagaaaaagatagtgtaccatctgctgatgatgtggaaccttcaggtaccggacagaattccaatacagaggaaaattctgcttctgcctctcatgtgccaatagaagctgatgtgcatgtagagccttcaggtaccaaccagtgctctaatgcagaggaaaattctgcttctattgaagctgataatgtgcatgtggagccctcaggtactagccagtgccccattgcagaggaaacttctgcctccatctctcatgacacaactcctcgagacgttgatggacaggtgcaagtggctgacgtttccacaatggactctgaagccataagtgaccatgtacctatggagggtcagcaaaacccaggagaagagagtaacacagttgttactaaaacagaagactctacagtagcagcaggtgacgtggatgttactaaaacagacgactctggagtagtagcaggtgatggtgaggctgatcccaaaaacatgtaaggttctaccgagaaagtggttggttgttcaatagttccttaatcctgttttcctacatttttggaaccaagttttgcttcatttcaagaatatgttgtttggttggatgaaaattcgaaattctcaaaatttgtactgtggtttagctacctatgctggtatttgcaaaataatcaaaaactgcatttgcctaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-1z4Dz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="45460" stop="39538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45156" g_stop="44769" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="406" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44768" i_stop="43822" i_length="947">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43821" g_stop="42127" g_length="1695"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="2101" r_length="1695" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42126" i_stop="41379" i_length="748">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41378" g_stop="41097" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="2102" r_stop="2383" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41096" i_stop="40843" i_length="254">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40842" g_stop="39840" g_length="1003"/>
          <reference_exon_boundary r_type="cDNA" r_start="2384" r_stop="3386" r_length="1003" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="3387" polyA_stop="3405"/>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-U320763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>3368</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45156" e_stop="44769"/>
          <exon e_start="43821" e_stop="42127"/>
          <exon e_start="41378" e_stop="41097"/>
          <exon e_start="40842" e_stop="39840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCAGCTTCGGAGCTAAAAACCGATTCCGAAATATCTTCTCGTCGGAGCGGAAAAACGCCGCCGCGGCCTGAATCTACTCTACCGGAGACCGTCATTTCTCGCCGGCGTATAGATTTCAGCTCATTTACAGGCAAAATCTGAGGTATACTTATCCAAAACCCTAGATTTCTCGGAGTCTCCCTTGGGAGACTGAAATAGTTAGCAAACATGAGGATTATGATAAAGGGAGGAGTATGGAAGAACACGGAGGATGAGATTCTAAAGGCGGCGGTGATGAAGTATGGGAAGAATCAGTGGGCTCGTATTTCTTCTTTACTTGTTCGTAAATCTGCTAAGCAGTGTAAAGCTCGCTGGTATGAATGGCTCGATCCTTCAATTAAGAAGGTCAGTTTTTTATTCTCTATTGAATTAAGCTTGTTTGTGAGTCATATCCTACTGTTGTTTGGTAGCTAGTAGATACATGTACAAGTTATGAGATAAATTGTTTTGTTATCTTATTGGCCTGCATTACTTACCAAATGAGTTTGTTCATATGTTTTGGTAAAAGGTTATATGAAAACTGTTTTTGATTGGTAACTTTTGCTGTGGAGAGGGTATAACAGTAGGTGACATATGCTCATAGTACCAGCTGCATGATAGGTATGAGGATAGGTTTGAATGTTAGATTTTGCGAATCATTGTTCAAGTGCCAAGGTAGGGGTAAGGTCTGCGTGGACTATACCATCAAAAGGAGACCACAAGTGGGATTATACCGGGCATGTTGTTGTAATTTTCAATTGTTGATTCAAAAGAGTGGCAGGAAGTGTGTGTTAAAGATGTCCGAGAAGGAAACTAGTTAGTGTGGAAGTTATTTTCCTCCAAAATTGAGTAAAATACTTCTCATTTCAGACCCTGACAACCAAATATATAACATTCTAGTTCACTGGGTGTTGGTTCTTTTTTCTTGCTTAGTTTAATGCGACATGCGAGTTATCTTTTTTTGTTATGTGTGACACCGTTATGTATTTGTTGATAGCTGTCACATTTCAGATTTCATCCTATTCCATTGTGAACTAGAGAAGTTCTGTTTTGTGAGCATACTGTGGCTTTGCACCAGTTTGTTTTTGGCTTGATTATTGGCATGCAAGATCTGAAACTAGTTTTCTGTGTGGAGATTTCTGTCTGAGTTTTTCCAATCTTTTTCTATTATTCCGTTTATCAATGACAGCTAATGATTTTCTGAATAGAGAAAGTGGAGAAGTCACAGTTTTTCAAGTTTACCTCAAGACTGGTAGGAACTTATGTTTTAGCTTAACCACTTCTTGACACAACTTACTGCTATTTTCTTCCAGACTGAATGGACTAGAGAGGAGGATGAAAAACTACTTCACCTTGCAAAACTCATGCCTACCCAATGGAGGACAATTGCGCCAATCGTTGGCCGTACACCATCACAATGCCTTGAACGTTATGAGAAGCTTCTCGATGCAGCATGTACTAAGGATGAGAACTATGATCCTAATGATGATCCAAGAAAATTGAAGCCCGGAGAGATTGATCCTAACCCGGAATCAAAGCCTGCTCGTCCTGATCCTGTTGATATGGATGAGGACGAGAAAGAAATGCTTTCTGAAGCACGGGCTAGGTTGGCCAACACAAGAGGCAAGAAGGCTAAAAGGAAAGCCAGAGAAAAGCAGCTTGAAGAGGCGCGGAGGCTTGCTTCTTTACAGAAGAGGAGAGAACTGAAGGCTGCTGGAATAGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTAGAAGGTGAAAGGAGAGTCGATAAGGAAGCTCGCCTAAGGAAGCAGGATATTGCGAGGAACAAAATTGCAGAGAGACAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAGGAAGAGGTCGAAACTGAATCTTCCAGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATTGGGGGAGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACCTCAAAGAACCCCTTCAACTAAGCAAGACGCCATTATGATGGAAGCAGAAAATCAACGAAGATTGACTCAATCTCAAACACCATTACTTGGAGGAGATAATCCTTTGTTGCACCCCTCAGATTTCTCGGGTGTCACTCCTAAGAAAAGGGAGGTTCAAACTCCAAACCCACTTTTAACTCCTTCAGCGACTCCTGGAGCCACGAGCCTTACTCCTAGAATTGGCATGACACCTTCGAGAGATTCTTATGGGATGACACCCAAAGGAACTCCTATGAGGGACGAGCTACGCATTAATGAAGAAATGGATATGCATAGTAATGCTAAACTGGGGCAATTTAATTCAAAAAAAGAATTGCTTTCTGGTTTGAAAAGCCTTCCTCAGCCCAAGAATGAGTACCAGATTGTCATCCAACAACCTCCTGAAGAAAATGAAGAACCAGAAGAGAAGATCGAAGAAGACATGTCTGATAGGATTGCCAGGGAGAAGGCTGAAGAAGAAGCAAAGCGACAAGCATTACTCCGTAAAAGGTCAAAAGTATTGCAAAGGGAGCTCCCTAGACCTCCCATTGCTTCTCTAGAACTAATAAAGAGTTCCTTGATGAGAGCTGATGAGGACAAGAGCTCCTTTGTTCCTCCTACACTAATTGAGCAGGCTGATGAAATGATTAGAAAGGAACTTGTGTCCTTGCTAGAACATGATAATACCAAGTACCCTCTAGATGAGAAGCCAGAGAAGGAGAAGAAAAAGGGGGTCAAGCGAAAAATTGTTGCTGAACCTGCTATTGAGGATTTTGAGGAAGATGAATTAAAAGAGGTACGTTCATGTTACAGAGAGAAAAAAATGGTTTTCTTTACATCTTTTGTCGATATACTTTTTCCTTACCTGCATTTATGCATAAAAATGACAAAGAGTTGTCTAAATTCCATATAAATCAATTTGGAAATTATTTTTTTAACATCCCAGCAACAACTGAGCGGAAGAGTTTCAAATGAGAGTTAGTGTCACGTAAGACTAGAAAAGAAAAAGAGTTCTCTAAATTCCATGTAAAGCTATTTTGGAAGTACTTCTTTAACATTTTCATATAACCTTTTTGTATAAGAATTTCTGAAACCATTCCTACAATTGCTGATAAATCCGAAACTATGGCTGCAAGAATTGAAGATTACGGTAGGTTCAATAGGATCATCCAATACTATATTTGTCAAGTTATATTTAACTGTATGTAGTGTATATGTTATGTATATATATGTTTTACTTGACTTTACACTACACAAGCTAGGTTACATGCTCTACTTTTTAGACCCTACTGAACTCGGGACAATACACGATGTCACAGCTTTGTTTTTAGTATTTGTTGTTACGAGGACGGATTAACTGAAATTGGAAATTCGAGTCTTGAGACACCAAAAAAATGCCGATGGTGAATAGACTCCTTGTCCCTTTTATTGTGTGCTAATAGATGTGCCCTTTCATTACCAAATTCGTGTTTAAACAATGACGTTCTTTGGAGGTTGTATGATTTTATCTTGAGCCTACTGCATTACTAACTCCACTTGTGCAGGCCGATGGATTGATCAAGGATGAGGCTCACTTTCTTCGTGTGGCAATGGGACATGAGAGTGAATCTCTTGATGAATTTGTCGAAATACACAAAGCAACTTTGAATGATATCATGTACTTTCCTACCCGAAATGCTTATGGTCTCTCAAGTGTTGCTGGAAACATGGAAAAGCTTGCTGCTTTGCAGAACGAGTTTGAGAATGTGAAGAAAAAAATGGACGATGATACTAAGAAAGCAACAAAACTTGAGCAAAAGATCAAAGTTCTTACTAATGGATATCAGGTACAGTTTAGTGGTTTAATCTTTAATCTGAATAGTTGCACATGCTTTACATTTTTCTGTTTGCTTCATATGCTTAGAGGTTTTATCATAAGACATGGTTTTATATCACTTCTGCAATCAGATAGGTTTCTGCTTCTTACATTGGATCTTCTTTTGGCTGCTCTAGTTTTTGTTTGTTTTTCTTTTTTAACTATATGTTGAGAGTTGAACTGTAAGCTATAAATACAAGCTAACTATTCATTGTGGATGAGCAGATGCGAGCTGGAAAGCTTTGGTCACAGATAGAGTCAACCTTCAAGAAAATGGACACAGCGGGTACAGAGCTTGAATGCTTCCGAGCATTACAAAAACAAGAGCAGCTAGCAGCATCCCACAGGATCAACAATATGTGGGAAGAAGTTCAGAAGCAAAAGGAGCTTGAGCGTACTTTACAGAAAAGGTACGGTGACCTCATAGCAGATACGCAAAAGATCCAGCATCTCATGGATGAGTATAGAATACAAGATCAAATGCAGGAAGAAGTTGCAGCAAAAAATCGTGCTCTTGAGTTGGCGAAGGCAGAAATGGCAGAAAAAGATAGTGTACCATCTGCTGATGATGTGGAACCTTCAGGTACCGGACAGAATTCCAATACAGAGGAAAATTCTGCTTCTGCCTCTCATGTGCCAATAGAAGCTGATGTGCATGTAGAGCCTTCAGGTACCAACCAGTGCTCTAATGCAGAGGAAAATTCTGCTTCTATTGAAGCTGATAATGTGCATGTGGAGCCCTCAGGTACTAGCCAGTGCCCCATTGCAGAGGAAACTTCTGCCTCCATCTCTCATGACACAACTCCTCGAGACGTTGATGGACAGGTGCAAGTGGCTGACGTTTCCACAATGGACTCTGAAGCCATAAGTGACCATGTACCTATGGAGGGTCAGCAAAACCCAGGAGAAGAGAGTAACACAGTTGTTACTAAAACAGAAGACTCTACAGTAGCAGCAGGTGACGTGGATGTTACTAAAACAGACGACTCTGGAGTAGTAGCAGGTGATGGTGAGGCTGATCCCAAAAACATGTAAGGTTCTACCGAGAAAGTGGTTGGTTGTTCAATAGTTCCTTAATCCTGTTTTCCTACATTTTTGGAACCAAGTTTTGCTTCATTTCAAGAATATGTTGTTTGGTTGGATGAAAATTCGAAATTCTCAAAATTTGTACTGTGGTTTAGCTACCTATGCTGGTATTTGCAAAATAATCAAAAACTGCATTTGCCTA</genome_strand>
        <mrna_strand>CTCATCAGCTTCGGAGCTAAAAACCGATTCCGAAATATCTTCTCGTCGGAGCGGAAAAACGCCGCCGCGGCCTGAATCTACTCTACCGGAGACCGTCATTTCTCGCCGGCGTATAGATTTCAGCTCATTTACAGGCAAAATCTGAGGTATACTTATCCAAAACCCTAGATTTCTCGGAGTCTCCCTTGGGAGACTGAAATAGTTAGCAAACATGAGGATTATGATAAAGGGAGGAGTATGGAAGAACACGGAGGATGAGATTCTAAAGGCGGCGGTGATGAAGTATGGGAAGAATCAGTGGGCTCGTATTTCTTCTTTACTTGTTCGTAAATCTGCTAAGCAGTGTAAAGCTCGCTGGTATGAATGGCTCGATCCTTCAATTAAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAATGGACTAGAGAGGAGGATGAAAAACTACTTCACCTTGCAAAACTCATGCCTACCCAATGGAGGACAATTGCGCCAATCGTTGGCCGTACACCATCACAATGCCTTGAACGTTATGAGAAGCTTCTCGATGCAGCATGTACTAAGGATGAGAACTATGATCCTAATGATGATCCAAGAAAATTGAAGCCCGGAGAGATTGATCCTAACCCGGAATCAAAGCCTGCTCGTCCTGATCCTGTTGATATGGATGAGGACGAGAAAGAAATGCTTTCTGAAGCACGGGCTAGGTTGGCCAACACAAGAGGCAAGAAGGCTAAAAGGAAAGCCAGAGAAAAGCAGCTTGAAGAGGCGCGGAGGCTTGCTTCTTTACAGAAGAGGAGAGAACTGAAGGCTGCTGGAATAGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTAGAAGGTGAAAGGAGAGTCGATAAGGAAGCTCGCCTAAGGAAGCAGGATATTGCGAGGAACAAAATTGCAGAGAGACAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAGGAAGAGGTCGAAACTGAATCTTCCAGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATTGGGGGAGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACCTCAAAGAACCCCTTCAACTAAGCAAGACGCCATTATGATGGAAGCAGAAAATCAACGAAGATTGACTCAATCTCAAACACCATTACTTGGAGGAGATAATCCTTTGTTGCACCCCTCAGATTTCTCGGGTGTCACTCCTAAGAAAAGGGAGGTTCAAACTCCAAACCCACTTTTAACTCCTTCAGCGACTCCTGGAGCCACGAGCCTTACTCCTAGAATTGGCATGACACCTTCGAGAGATTCTTATGGGATGACACCCAAAGGAACTCCTATGAGGGACGAGCTACGCATTAATGAAGAAATGGATATGCATAGTAATGCTAAACTGGGGCAATTTAATTCAAAAAAAGAATTGCTTTCTGGTTTGAAAAGCCTTCCTCAGCCCAAGAATGAGTACCAGATTGTCATCCAACAACCTCCTGAAGAAAATGAAGAACCAGAAGAGAAGATCGAAGAAGACATGTCTGATAGGATTGCCAGGGAGAAGGCTGAAGAAGAAGCAAAGCGACAAGCATTACTCCGTAAAAGGTCAAAAGTATTGCAAAGGGAGCTCCCTAGACCTCCCATTGCTTCTCTAGAACTAATAAAGAGTTCCTTGATGAGAGCTGATGAGGACAAGAGCTCCTTTGTTCCTCCTACACTAATTGAGCAGGCTGATGAAATGATTAGAAAGGAACTTGTGTCCTTGCTAGAACATGATAATACCAAGTACCCTCTAGATGAGAAGCCAGAGAAGGAGAAGAAAAAGGGGGTCAAGCGAAAAATTGTTGCTGAACCTGCTATTGAGGATTTTGAGGAAGATGAATTAAAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATGGATTGATCAAGGATGAGGCTCACTTTCTTCGTGTGGCAATGGGACATGAGAGTGAATCTCTTGATGAATTTGTCGAAATACACAAAGCAACTTTGAATGATATCATGTACTTTCCTACCCGAAATGCTTATGGTCTCTCAAGTGTTGCTGGAAACATGGAAAAGCTTGCTGCTTTGCAGAACGAGTTTGAGAATGTGAAGAAAAAAATGGACGATGATACTAAGAAAGCAACAAAACTTGAGCAAAAGATCAAAGTTCTTACTAATGGATATCAG..............................................................................................................................................................................................................................................................ATGCGAGCTGGAAAGCTTTGGTCACAGATAGAGTCAACCTTCAAGAAAATGGACACAGCGGGTACAGAGCTTGAATGCTTCCGAGCATTACAAAAACAAGAGCAGCTAGCAGCATCCCACAGGATCAACAATATGTGGGAAGAAGTTCAGAAGCAAAAGGAGCTTGAGCGTACTTTACAGAAAAGGTACGGTGACCTCATAGCAGATACGCAAAAGATCCAGCATCTCATGGATGAGTATAGAATACAAGATCAAATGCAGGAAGAAGTTGCAGCAAAAAATCGTGCTCTTGAGTTGGCGAAGGCAGAAATGGCAGAAAAAGATAGTGTACCATCTGCTGATGATGTGGAACCTTCAGGTACCGGACAGAATTCCAATACAGAGGAAAATTCTGCTTCTGCCTCTCATGTGCCAATAGAAGCTGATGTGCATGTAGAGCCTTCAGGTACCAACCAGTGCTCTAATGCAGAGGAAAATTCTGCTTCTATTGAAGCTGATAATGTGCATGTGGAGCCCTCAGGTACTAGCCAGTGCCCCATTGCAGAGGAAACTTCTGCCTCCATCTCTCATGACACAACTCCTCGAGACGTTGATGGACAGGTGCAAGTGGCTGACGTTTCCACAATGGACTCTGAAGCCATAAGTGACCATGTACCTATGGAGGGTCAGCAAAACCCAGGAGAAGAGAGTAACACAGTTGTTACTAAAACAGAAGACTCTACAGTAGCAGCAGGTGACGTGGATGTTACTAAAACAGACGACTCTGGAGTAGTAGCAGGTGATGGTGAGGCTGATCCCAAAAACATGTAAGGTTCTACCGAGAAAGTGGTTGGTTGTTCAATAGTTCCTTAATCCTGTTTTCCTACATTTTTGGAACCAAGTTTTGCTTCATTTCAAGAATATGTTGTTTGGTTGGATGAAAATTCGAAATTCTCAAAATTTGTACTGTGGTTTAGCTACCTATGCTGGTATTTGCAAAATAATCAAAAACTGCATTTGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0YudIx/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320967" ref_strand="+" ref_description="SGN-U320967        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:2748430-2751281 REVERSE | Aliases: F22O13.12, F22O13_12(evalue: 2e-70, score=263) genbank/nr: gi|23397051|gb|AAN31811.1| unknown protein [Arabidopsis thaliana](evalue: 9e-69, score=263)">
      <seq>gaaaaccctaatccctttagcagagaagaaagaaggagtagctcaaaaatggtgtttacaatatcatcaaaccctgttcagtttacacatactacttctttaaatgctcgacccaattgttatctcaaagcttctgttccagtttcaaatttatcgttttctttcttcagacatgaatacatcaggttttctgtaaaatctcgcctgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttctagcgatgactcaaatccttatgaggttctgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaaggagaaggaaagatgctgagcggaggggtgatgaagcaacgcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacaaaaaggaagcagggtgtcacttttggctcgtttaaggtatctaaagaggtacgatatgctgataagcagcctattttgccatggggtccacggttcaccaaatctgatgacaaagatatcaaaatcaacttggcaatttcagctgtatttatagcttgggtttttataaatcgtaatgctgagtggaagcctttacagtttttggccttcgcctttgtatataggatatttgagaaattaaaagcatttgagcctccaactcccacgtttacagaggaaggcgaagatgaaggacggatgatgaggatgggaaaaaggctgcttcgttctcttgcattagtttttggttgcatagctattgcatctttgggatatactggtctcctcaattttatcgagtatgctggtggtttcatacctgtctttctgtacaataatcaggaattgcttgtaactggattcacagccatcgtgctttccatcatcgcatcttattacagatagtctaccttctacacttgttgaagaagagatgcagttgccttgtgttagctgtcaaattttgtaattctatttgttccagaaatttgccttgttttgtctataggatttgattgagcagcagttgtaaggatgcaccaagttctgaggattctaggattaaacaagaccacaatcttttcaaaattgatggatgttaatgtggaaatataaatgataatcaggaggaaaggttagggcggatcaatccttcatttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-1z4Dz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51336" stop="46151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51036" g_stop="50867" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.601" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="282" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="387" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="465" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49406" g_stop="49351" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="521" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48970" g_stop="48913" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="579" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47831" g_stop="47709" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="702" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47708" i_stop="47567" i_length="142">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47566" g_stop="47471" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="798" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="47470" i_stop="47304" i_length="167">
            <donor d_prob="0.826" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="47303" g_stop="47232" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="870" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="47231" i_stop="46776" i_length="456">
            <donor d_prob="0.800" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="46775" g_stop="46451" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="1195" r_length="325" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1196" polyA_stop="1205"/>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-U320967" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1195</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51036" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49769"/>
          <exon e_start="49406" e_stop="49351"/>
          <exon e_start="48970" e_stop="48913"/>
          <exon e_start="47831" e_stop="47709"/>
          <exon e_start="47566" e_stop="47471"/>
          <exon e_start="47303" e_stop="47232"/>
          <exon e_start="46775" e_stop="46451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTATTATTTTTTGGTTTCAAAGCTAGCTAAAATCTTAGTAGCATGCAGTTTTAGGCAATGTTTGTTCACTCTTGGGGTTTTGTAAATATTTTGTATTTTCTGTTCATATAATGTAATTGAGGTGGGGGTGGATTTTGATTAGGATACTTATAGTCATTTTATTCTTTTTTCTTTACTATTCGCACAAATTTTCCCCATCTTTTACTATATGAAAATAGAATTGCTCTTCTATCCCTGGATTAATTGCAAGAATTTTCTTAGTAATTTTATTTATGATATTCTATATGTATAAGATTTGGCTGTTTAGCTTTGTTTAGGCGCAGATACTGATTTCTCTTATAAGTTTGTTATTTTTAATTTAGGTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTACGTATTCTGCCAATAATGCTTTCATGACAATAGCTCTCTGAAATTAGATAGTTCTCTTGCTTGCAACTATGCGTAATTGACAATTATTTTTCAATGATTCAAAAATTAGTATAAATTACATTTGCTGAATTTAGTTGGCTGTTGTGTAATTAACACATACATGCATTAACATCTTTACCACACATATAGGTAAATGCCTTACTGACTCAACCAAAGCTATTTGTATGCAAATATTTCAGTATGCTATTAGTTTCTCTTCCCCTTCCGGTCCTTGTCCCTCGAAACATCTTTGCTTTACATTTACTGGTAGGAAATTCATGCAGCAGATTATGTAATTTTTACCCTTTTCAGTTATTAATTTTAATGCATGCTTTCAGGTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTGTAAGTAGTAAAATATTCATCCTTCCATTCCAATCTGGTTTTCTTGTTTGCCTTTTAGGATGCTAGTTTACAAATTGTTGTAGTAAAATCATGGATAAATTCGTATTTAAGTATGATTTAGAAAATTCAGAAATTATATGAAAAATTCTGACATTGGAAGTATTTTCATCTCAAAATACAAAAATAGATATGGTTGACTTGAAAAGTCACAATCTTTTGAAACAGAGAGTAGTTATTCCGTCTTCTACAAGGGCCTCCTTTTGATTTTTTTTCTACGTTAATGTATCTATTTCTTTCTCTAGGTGATCTGCCTACCCTCTTACAATTTAAGTGTTACTTTTTATAATTGAATAGTTTATATGTGCTTATTTGAATCATTATGGATCCTTGGATGTTTCATAATAGTCATGTATGGAAAGTACAGCCGCGGCTACTCAAAATATTGGTTTCCATTCAAGCATGGCTTGAACCCAACATAAAGTGCATGAAAGCTTACTGATGCTTCAACCCATATCTACCTCTGTCCACTTCTATGAGTTCTTTTTCAAGTTCTGCACTTTTATTCTTTTGGTAATGAATGAGTTCTATGGTCAACCTTGGGGGTCTTTCAAGGGTTACTGGAACTAATATATAATGTAACCAATCATCGGAAATTTGTGCCTGAAGAAGTTTTTAGCGCCTAAGAATTTGTGCTTGAAGGTTTTCCTTTAGCTGAACCTCCTTTGTTTAAGACTTCAATCTCTTTGGTGATATGCTCTGTTTCTAAGTACTTGATACCAAAAGAAGAGACTCTGTATTGCAACGAGTAATGCTTCATAAGTGCAAGATAAGTAGATAGCAGCAGTAATTCACCGGATCTTCCGTCTACAAAAATAGAAGAGGTGTATGTTAAGGTTCGCTTCATGAAAGCAAGAAAGGAAGCAAGTTCGACCTTGCCAGAAAAAAAGAAAGATAACAGAAATAATTTTGTTAATCATTGTCATCGCTCTCTGTTAAATGCAGTTCTCACTCTCGATTTAATGAAATATTAATCTCGATTCTCCTAATGGTACTCTGTTGTTTTATGTATTATCTTTTGCAGATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTACAGTAAGTATACTTAAAATAGCATTCCTGTCTTCTTCTGCTTGTGAATGCAATTGTATCTCCTAATCAACATTTCTTTCTCATATTTTGCAATATATAACATATTGCTTTTCAAGTGCATTCATCTTTTAGCTGCTTTTTTTAGGAGGAAGGCGAAGATGAAGGACGGATGATGAGGATGGGAAAAAGGCTGCTTCGTTCTCTTGCATTAGTTTTTGGTTGCATAGCTATTGCATCCTTGGTATGTGTTCTGTCAGAGTAATGTTACCTGACTGTTCAATTTGTTGGTCCATCTGTAAAGTCACTTGAAAGAATCTGGTTTTGCTTTCTGAATCATCTCTCATCTTGGAATGTCCTACATATTTGTTGCCTTTTATTGAATTAAATCTCCGTTATTCATTTGTATAGGGATATACTGGTCTCCTCAATCTTATCGAGTATGCTGGTGGTTTCATACCTGTCTTTCTGTACAATAATCAGGTAAGAGAAGATCCTCTCATTGCAATCTCTACCACCGCTGCACAAACAAAAGGCTTCACAGACCTTCACATATCACAGATAGAATAACAATGTTTTATCATCTTCTTCGACATTTTTGAGTCATATTCTCTGAATAGCTATGACTCCTCTTCATCTTATGAACAGCTAAAGAAAAAATTGCATTCAGTTAATATTACTTTGCCTAAACGAATTAAGGCTACATTAAGGGAGGGGAAACTTAGTTCTCAAATATCCTTTATGTTTTGCCCTCTTGCATATATTTTTTCGTGTATCCTGCTGTTTGCTTCTGTATACTTGTTGTTAGGGTTATAATGTTGAGTCCTCTTTTACCTCCATTCAACATGAATATGAAAAAATGAAGGCATTCATCCTTAGCTTTACCATGATTATTACCCCAATGCTTATCCGCGGTGTTAAATCTTTTTTCGCGTGCAGGAATTGCTTGTAACTGGATTCACAGCCATCGTGCTTTCCATCATCGCATCTTATTACAGATAGTCTACCTTCTACACTTGTTGAAGAAGAGATGCAGTTGCCTTGTGTTAGCTGTCAAATTTTGTAATTCTATTTGTTCCAGAAATTTGCCTTGTTTTGTCTATAGGATTTGATTGAGCAGCACTTGTAAGGATGCACCAAGTTCTGAGGATTCTAGGATTAAACAAGACCACAATCTTTTCAAAATTGATGGATGTTAATGTGGAGATATAAATGATAATGAGGAGGAAAGGTTAGGGCGGATCAATCCTTCATTTGAAAAACA</genome_strand>
        <mrna_strand>GAAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAG..........................................................................................................GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACG............................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTACA..............................................................................................................................................GAGGAAGGCGAAGATGAAGGACGGATGATGAGGATGGGAAAAAGGCTGCTTCGTTCTCTTGCATTAGTTTTTGGTTGCATAGCTATTGCATCTTTG.......................................................................................................................................................................GGATATACTGGTCTCCTCAATTTTATCGAGTATGCTGGTGGTTTCATACCTGTCTTTCTGTACAATAATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGCTTGTAACTGGATTCACAGCCATCGTGCTTTCCATCATCGCATCTTATTACAGATAGTCTACCTTCTACACTTGTTGAAGAAGAGATGCAGTTGCCTTGTGTTAGCTGTCAAATTTTGTAATTCTATTTGTTCCAGAAATTTGCCTTGTTTTGTCTATAGGATTTGATTGAGCAGCAGTTGTAAGGATGCACCAAGTTCTGAGGATTCTAGGATTAAACAAGACCACAATCTTTTCAAAATTGATGGATGTTAATGTGGAAATATAAATGATAATCAGGAGGAAAGGTTAGGGCGGATCAATCCTTCATTTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0YudIx/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321078" ref_strand="+" ref_description="SGN-U321078        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycogenin glucosyltransferase (glycogenin)-related, low similarity to glycogenin-1 from Mus musculus (SP:Q9R062), Rattus norvegicus (SP:O08730), Homo sapiens (SP:P46976); contains Pfam profile PF01501: Glycosyl transferase family 8 | chr5:6131211-6133885 REVERSE | Aliases: T28N17.3(evalue: 0, score=654) genbank/nr: gi|22326882|ref|NP_197349.2| glycogenin glucosyltransferase (glycogenin) - related [Arabidopsis thaliana] gi|26452906|dbj|BAC43531.1| unknown protein [Arabidopsis thaliana](evalue: 0, score=654)">
      <seq>ggacaaacaagactatgaacattgctatggagcaataaaaattcaagaatccatatgaactttgaagaattcaaaaaccccagttggaaatagatcccctttttcaatttcaatttgaaaaagagaaaaaaaaagtgatcttttttttttcttcactgtagggggatgaaaatcagttttttacgatttggggttttgttcttgttgggtaattgtttgattggagcttattgttccaaatctgatgaagcatatgtgacccttttgtatggcgatgagttcttgcttggggttcgagtacttggcaagtcgattagggatactggatcaaccaaagatatggtagttttggtctctgatggggtttctcaatatgccaaacatctactccaggcaaatggttggattgtggaaaaaattagcttactggcaaacccaaatcaagtgagaccgaaaaggttttggggcgtctacacaaagctaaaaatatttaacatgaccacttacaaaaaaggggggtatcttgacgctgatactattgttgttaaaagcattgaagatctgtttaaatgtgggaagttctgtgcaaatttaaaacattctgagagactgaattctggagtcatggtggttgagccatcagaaaaagtttttaatgatatgatgagcaaggtgaccactttgccttcttacactggaggtgatcaaggttttctcaactcctactatgttgggtttgctaatgctcaggtttatgagccaaatttgccgtcagatgtcttaaattccagaaaggttccagaaatggagagactttctactctttacaatgcagatgttggcctctacatgcttgctaacaagtggatggtggatgaaaaagaacttcgagttattcattacacacttggcccgcttaaaccgtgggattggtggacgtcttggctgttaaaacctgttgatgtctggcagaatgtcagggtacaacttcaagaatctctacctggaactagaggcggcaaaaattccagagatgaacttcttgtcaaatttctttatttgcttccattgcttctgatagcattttgttactatcggtcgttcttacagacacaatcactatggcaccatatcagacaaatgtactacaaggtcagaggaggtgtcctagcttatgcctctgttcctccatctgccatcagctccaaccagcagttcccaaatggtatgcagttgaagatgcctacttatctgggtgcggtatctgtctgtgtctgttttgctgctgctcttgtgtcccttggtcttccacttttaatcattccgcgccaagtaatgccatggactggtctcctccttatgtacgaatggacatttacacttttcttcctcttgttcggaagttatctgcacttagtttatcagtggggaagggttgcggcaaatcaacctggtcaatttccggctcatcctgtatctttggattatgaacctggaaaaggtcatcagcggcaacaatcatgttgtgacaatgaagcatggtactatgggttagggatggcatttcttgccattgcagccccagcattgcctggtgtttttggagtcacttctttgtttttgaggttaggtttgatggtcgtaggcggccttattttgacgtccttcatgacatatgcttcagagcatctatcgattagatcattcgcgaggggctttgaagaaaggaacacaccaaggagtaggagtgtgtgtttcttatgttgatcatgtcaatatttttggttttagcttaactacaagcaatcatcttcttgatctcatttgtaacttgttttgacatattcttcctagtgaaaatatgtagaatatgttgggaaatcatttatttactaatgtgatttttattttttttgttaaggttaaaaaggtgtatgttttctgtatatgcttcttaaattttttgattgatatggatgaggattattgatcaattctcaagtgtttggaacacttccatactggtagtcaatagtatatactcatttttgtagcttctttctcctttgatttatgtaaatatttatgataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-1z4Dz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="59528" stop="66904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59827" g_stop="60219" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60220" i_stop="61630" i_length="1411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61631" g_stop="61751" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="514" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61752" i_stop="62404" i_length="653">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62405" g_stop="62590" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="700" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62591" i_stop="62816" i_length="226">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62817" g_stop="62980" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="864" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62981" i_stop="63766" i_length="786">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63767" g_stop="63874" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="865" r_stop="972" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63875" i_stop="64124" i_length="250">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64125" g_stop="64262" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="973" r_stop="1110" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64263" i_stop="64340" i_length="78">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64341" g_stop="64445" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1111" r_stop="1215" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64446" i_stop="64679" i_length="234">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64680" g_stop="64965" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1216" r_stop="1501" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64966" i_stop="65056" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="65057" g_stop="65180" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1502" r_stop="1625" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="65181" i_stop="66138" i_length="958">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="66139" g_stop="66601" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1626" r_stop="2088" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2089" polyA_stop="2105"/>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-U321078" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2088</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59827" e_stop="60219"/>
          <exon e_start="61631" e_stop="61751"/>
          <exon e_start="62405" e_stop="62590"/>
          <exon e_start="62817" e_stop="62980"/>
          <exon e_start="63767" e_stop="63874"/>
          <exon e_start="64125" e_stop="64262"/>
          <exon e_start="64341" e_stop="64445"/>
          <exon e_start="64680" e_stop="64965"/>
          <exon e_start="65057" e_stop="65180"/>
          <exon e_start="66139" e_stop="66601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACAAACAAGACTATGAACATTGCTATGGAGCAATAAAAATTCAAGAATCCATATGAACTTTGAAGAATTCAAAAACCCCAGTTGGAAATAGATCCCCTTTTTCAATTTCAATTTGAAAAAGAGAAAAAAAAAGTGATCTTTTTTTTTTCTTCACTGTAGTGTGATGAGAATCAGTTTTTTACGATTTGGGGTTTTGTTCTTGTTGTGTAATTGTTTGATTGGAGCTTATTGTTCCAAATCTGATGAAGCATATGTGACCCTTTTGTATGGCGATGAGTTCTTGCTTGGGGTTCGAGTACTTGGCAAGTCGATTAGGGATACTGGATCAACCAAAGATATGGTAGTTTTGGTCTCTGATGGGGTTTCTCAATATGCCAAACATCTACTCCAGGTAGGTTTTGATTGTACTCTGATCAAAGTTATTTTTGAGTAATACTGAATAGTAGTACAAGAACATAAACCCCTTGATCCCGAACTAGTTGAGGTTGGCTGTATGAATCTTATTTTAATTTGTTTCATTTGGAGCCATATCAGAAACTCAATTATAGTTTTTTGATAAGATTGAGCTGGGAGATGTGAAGACCGTTGAATTGTTCTTGTTCTAGGACTAATGAATTCATTTTTTCGCCTTGTATGTGTTTGCTTATAAGAACATAAACCCCTTGATTCCAAACTAGTTGGGGTCAACTATATGAATTGTTTCGTTCTGTTTCGTTTGGATCCGTATGGGATACTCAATTATAGGAATAACTTCATTATACGGATGAAATGGTAGTTTTTTATAAGCTTGAGCTGGGAATTGTTAAGGCAGTTGATTTGTCATTGTTCTAGGAAAATATTTGCTTGCTTATTGAGGAATACTTAGTAATACTAGAAGAAAATAAACCCCTTGATCCCAAACTAGTTGGGGTCAACTACATGAATCCATTTCGTGCTGTTTCATTTGGATCCATTTTGGATATTCAACTACAGAGACATCTCTCTACCGTTTAAAGGTAGTGGTAAGGTCTGCACACATCTTACCAATCCCAGATCCCTCTAGGTATGTTGCTCTTGAGCTGGGAAATATAAAGCTAGCTGATTTGTTATTGTTGTTGAGCTGGGAAATGTAAAGTTAGCTGATTTGTTATTGTTTTAGGACCAATAAGTTCAACTTTTTATGTGCTTGCATGTTAAGAATAACTCAGTATTGAATCCAAGAGGATGACTCAGTGTTTGAGCCATAAGAGAAAAACCTGGTGATTCAGTGTGTAAGCCCATCTATCCAGCTTCCGTGAGCAGGTTTTTCCCATCACTTGAAATGTGGGTTTTAGCTGATTGCCTTGTGGATTAGTGAAAGTACACACAAGCTGAGCCATAAATATAAATTGTTAGAAAAAGAAAGTTCACTTCCTCATGGGTATTCTAGAGTGTAAATTGATGAATGTTAAGTCAATTGCTTTATTAGTGATCTAGGACTAGTATAAGTGAATATTAAAATCTAAGTCGAGTGCTGCTCAATTGTTAGAAGTAGTAAACTGGGTCTATCTTGAAGATATGTTCTTTTTTCTATTCCGAAACTAAATTACTTTGCACTCTTTCCAGTCGGTAAAAGCAAATTGTAAAAGTGGTACCCGTGAATTGTGGTTTACTTTGCCTGGGTGAAGTCCTATTATAGTCTTTGTTTTAGCTGTTATTCTTTATTGTAAAATTTATTCATAAATTAATTGTCAATCTTTTTGTTTATTATGTATAGCTATTTCTAAGCGGTGCTTACTTTCCTGCTAAAATGGTTGTTTTGATGTTTGGTTTCTTTCTTACAGGCAGATGGTTGGATTGTGGAGAAAATTAGCTTACTGGCAAACCCAAATCAAGTGAGACCGAAGAGGTTTTGGGGCGTCTACACAAAGCTAAAAATATTTAACATGACCACTTACAAGAAAGGTAATTCAATGTGTCAAACTTCAACCTAAATGCTAAAGAAAGAAAGGGATGTAAAATAGAACCTTGGATATTTCTTAGGTGTTTCTTAACTTTGGCTTGATGTAGTTATTGTGTTCTTGATGATTTCCGCCATTCTATGTCCTGTTATATAATGGATTGTATAAATGGTCTAATTTATTTCAGTTTTCTTCTTCCAATTATATTCCTTTACTTCAAACGTATCAGCCTGTTTTTTAAAAACTGATGTAGCTGCAAGTACATCTAGTATGTAATTGTACCAAGAGTAAAAAAAAAATAGGTGAATATATCTGAAGACTAAGAGAACCATGTTCGGCTTCTATAAAACTTTAGATGTAATGTGTCTTGAGCAATTGCAACAGCAACAATAACATACCCAGTGTAATCATAGGTGGCTCGAGCTATGCGTGTACTACCAGGCTCTAGGCTTTAGTACAATTAAGTCATCTCTTGTGTATGCTGTTTAAGGGAAAAGCGATGGGTATGTGAAAGATAGAGACCTAGCTTATTTCATTACCTGAATATTTCAAACAGATATCTCATTACTCCTGTAGTTCTCTTTTCTGCTAAGCATTATGCATATGGTTTTCTGACTTGTAGACCTTATTCTTGCCATTTCTCCCTTGTTTTGGCAGTGGTGTATCTTGACGCTGATACTATTGTTGTTAAAAGCATTGAAGATCTGTTTAAATGTGGGAAGTTCTGTGCAAATTTAAAACATTCTGAGAGACTGAATTCTGGAGTCATGGTGGTTGAGCCATCAGAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTCTTACACTGGAGGTACTGTTTAGCTGTGAACTGCTTTGGTTTTAAGGTTATATGTTGTCATCACATCTTTCTATAGTCCAACTTATGTTTCTATTGAAAGATTTTATCTTTTATCATCTAATAATTTTAGTGAGATATTTTACTAGTTCTGATAGTTCGTTGCACAGATTGTTTTTTCCATTGTCCTAATGGTGAAAATATTTGTGTTTGATAATTGTTGTTGATTCTCTTCTAACAGGTGATCAAGGTTTTCTCAACTCCTACTATGTTGGGTTTGCTAATGCTCAGGTTTATGAGCCAAATTTGCCGTCAGATGTCTTAAATTCCAGAAAGGTTCCAGAAATGGAGAGACTTTCTACTCTTTACAATGCAGATGTTGGCCTCTACATGCTTGCTAACAAGGTATGTTTAGGTGCAAGAGACTGTCCTTTCTTTGAGTGTGTTTTTAGTTGGTTGGTTTGTGGTGTGTAGGCTTTAGCATTTGATGAAATATGGACCAAATACAGTTAGTTTTTACACTCTTGGGCAAGCTTTAGTGCTTTCCTGGACCCCGCACACTGCGGGAGCGTTAATGCACCAGCCTGCCCCTTTACTCTTAAAAGGAAGGATTAAAGCTGCCATTTTTGTTAATATAGGAAAAGAAGAAAAAGTTGACTTTCATGGGATTGAAATATGCTGCTGTAGTATAGGCTATAGCAATTAGTTATCAACAATTAGTGAAATTTGATTGGTTCATACTATATATTTTATCCATAGAATAGTCTTTCCATGGAGAGAAGAATTTTAGAGAAAGCTGCACAAACTATTTAGGAGAACGTGCTGCTAAATGTGCATGGTATTAATAGAAGGTAGTCAATGAAGATATTTTGGATGGCCAGAGATAAGAGAGGAAAAGCCTAATGCTTGGTACCTTCCACCTCAAACCATAAAGTGGGAATGGATCATTGTCTGACTCTTGTTTTCTTTGGAGGACTGAACTCGTTGGTCTTGCCATGGGGCGTGTACCATATCCCAGAAAAAAAAGAGAAGATTTTCTTGGATTACGGGAAGTATTTTCCTGCTGAAACAAATGAGAAGGTTTCATATTAGATGAACATAGGCAATTGTTTGCAATAGATATTTTCGGAAGTGCATTAAATTTGCTTCCTTGTTTTGACCTTTATCTTTTCATAATTGATGTATCTGCAGTGGATGGTGGATGAAAAAGAACTTCGAGTTATTCATTACACACTTGGCCCGCTTAAACCGTGGGATTGGTGGACGTCTTGGCTGTTAAAACCTGTTGATGTCTGGCAGGTATTCTTGGTCTTCTCTCCTCCAGCTGTTGCTAGTGCTCTTTGCATTCTCCAAATGTGGTCGTCTTTTTCCTGCACTAGGATGCTCCCTGGTTCTATCCCACACCCATCATAAAAACCTTTTTTTGTGTCTTCGTGGAAGCTTTTTTTTCCATCTTGAAGATAAGGATGTCTTTAGATGTGGAAAAGGAGGACTTTTGTACTTGCCAATACAAGATTGTGTGACTTTCCTATGTTTGCCTATGCTGCAGAATGTCAGGGTACAACTTCAAGAATCTCTACCTGGAACTAGAGGCGGCAAAAATTCCAGAGATGAACTTCTTGTCAAATTTCTTTATTTGCTTCCATTGCTTCTGATAGCATTTTGTTACTATCGGTCGTTCTTACAGGTTGGTGATTTTAAAAAGAGTTAATTACTTAGCCATTAGTCAAAAATTTGAAATATTTCTAAAAGATGGCTTCTGCAGACACAATCACTATGGCACCATATCAGACAAATGTACTACAAGGTCAGAGGAGGTGTCCTAGCTTATGCCTCTGTTCCTCCATCTGCCATCAGCTCCAACCAGCAGGTACATCTCTCCTTCCTCTCAGTTGTTGAGTCTTCAACATCCTGATTAAGTTTTGCTCCTTCCTTTCACTATTCATAAATTGGTTATCTTAGAATGCAGAGGCCTTAAATTCTTGCCTTCATATTGACATATTTTGGCTGCTGAAATTAATGACCATATTTCTACCATAATATTGATTTACTTATTGATAAATTTATGTTGCTTTTTCTCACATAATCTTAAAATGATAAACAGTTCCCAAATGGTATGCAGTTGAAGATGCCTACTTATCTGGGTGCGGTATCTGTCTGTGTCTGTTTTGCTGCTGCTCTTGTGTCCCTTGGTCTTCCACTTTTAATCATTCCGCGCCAAGTAATGCCATGGACTGGTCTCCTCCTTATGTACGAATGGACATTTACACTTTTCTTCCTCTTGTTCGGAAGTTATCTGCACTTAGTTTATCAGTGGGGAAGGGTTGCGGCAAATCAACCTGGTCAATTTCCGGCTCATCCTGTATCTTTGGATTATGAACCTGGAAAAGGTTCGTTCATTTTACCAGATCACCGAATTCTATTTTACTAAATTTGTCGGTGCTTTTCTTCAGTGTTGCTGCCTACTTTTTTGCTTTGTAGGTCATCAGCGGCAACAATCATGTTGTGACAATGAAGCATGGTACTATGGGTTAGGGATGGCATTTCTTGCCATTGCAGCCCCAGCATTGCCTGGTGTTTTTGGAGTCACTTCTTTGTTTTTGAGGTACTCCCAACAGGATTTCTGCATTTCAATGAATTTTGTGTCATTTGGTTGTTGTCTATTCGAGCTGGATTTGAATTACGTGATAGCAGTTGGTGTCTACTTGCCATGTGGTTTCTTGGTTTCACCTATAAAACTAGAATCTCTCAAGTATCTATACATGTGTAGTTATAAGTTATATTGCAATATATATTTAAATGGACTCCTAATCACATCTTTAACTCATTCATGAATAAGAAAGAAATAATACGGGCGAGAAAAGACCAAGTAAATTCAGGCTTTTAAAGTTAATTCAGAATTTCGCATATGTTATATTTTGAAGGCCCAGTAAGCCTAAAAGAGGCTTTAGCAACCATTCTTATTAGACGACTGTCTCATATATTCCTCTTATGTTATCGTAGTGAATTGCTTTATATCCTATATTTTGCCGTCTTATTTTCTTATAAAATTGTGCTTCAAATTCTTCTTTTCTTTTGAACCGAGGGTCTATCGCAAACCACCTTTCTACCCACAAGGGTAGGGGTAGGATTTGCATACATCCTACCCTCCCCGACCATCCTCGTAGGATTGCACTGGATTTGTTAGCATAGTGTAGCTTCAACAACATTGCTGGGTTGTTATGTAAGCCATCTTCTATGACCGCGTAGCGTCACATATTCTGACAAATTCTATGAATCCTTAACTTTTTGGTGCTTGTTTTCTTTTATAGTTTCATCACTCAGGTAGAATTTCTTGGTGATGCTGTTGGCTTCTCCGAACGTCCAATTTCTCACCCTCTCCTTTGTTTTCTTGTCCGTCTTTACAAATACCTCTTGTTGTGATTAGGCACTAGAATATCTTTGACGTAAATAGTCAAAGAATATCTCCCGGGTAGACATTGGTTGAATACGAATATTCATATGATGTGATGGAAGTGAAACATCTACGGAACGTAACGTTTCGTTCTTATGTTTTTCCACAGGTTAGGTTTGATGGTCGTAGGCGGCCTTATTTTGACGTCCTTCATGACATATGCTTCAGAGCATCTATCGATTAGATCATTCGCGAGGGGCTTTGAAGAAAGGAACACACCAAGGAGTAGGAGTGTGTGTTTCTTATGTTGATCATGTCAATATTTTTGGTTTTAGCTTAACTACAAGCAATCATCTTCTTGATCTCATTTGTAACTTGTTTTGACATATTCTTCCTAGTGAAAATATGTAGAATATGTTGGGAAATCATTTATTTACTAATGTGATTTTTATTTTTTTTGTTAAGGTTAAAAAGGTGTATGTTTTCTGTATATGCTTCTTAAATTTTTTGATTGATATGGATGAGGATTATTGATCAATTCTCAAGTGTTTGGAACACTTCCATACTGGTAGTCAATAGTATATACTCATTTTTGTAGCTTCTTTCTCCTTTGATTTATGTAAATATTTATG</genome_strand>
        <mrna_strand>GGACAAACAAGACTATGAACATTGCTATGGAGCAATAAAAATTCAAGAATCCATATGAACTTTGAAGAATTCAAAAACCCCAGTTGGAAATAGATCCCCTTTTTCAATTTCAATTTGAAAAAGAGAAAAAAAAAGTGATCTTTTTTTTTTCTTCACTGTAGGGGGATGAAAATCAGTTTTTTACGATTTGGGGTTTTGTTCTTGTTGGGTAATTGTTTGATTGGAGCTTATTGTTCCAAATCTGATGAAGCATATGTGACCCTTTTGTATGGCGATGAGTTCTTGCTTGGGGTTCGAGTACTTGGCAAGTCGATTAGGGATACTGGATCAACCAAAGATATGGTAGTTTTGGTCTCTGATGGGGTTTCTCAATATGCCAAACATCTACTCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATGGTTGGATTGTGGAAAAAATTAGCTTACTGGCAAACCCAAATCAAGTGAGACCGAAAAGGTTTTGGGGCGTCTACACAAAGCTAAAAATATTTAACATGACCACTTACAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGTATCTTGACGCTGATACTATTGTTGTTAAAAGCATTGAAGATCTGTTTAAATGTGGGAAGTTCTGTGCAAATTTAAAACATTCTGAGAGACTGAATTCTGGAGTCATGGTGGTTGAGCCATCAGAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTCTTACACTGGAG..................................................................................................................................................................................................................................GTGATCAAGGTTTTCTCAACTCCTACTATGTTGGGTTTGCTAATGCTCAGGTTTATGAGCCAAATTTGCCGTCAGATGTCTTAAATTCCAGAAAGGTTCCAGAAATGGAGAGACTTTCTACTCTTTACAATGCAGATGTTGGCCTCTACATGCTTGCTAACAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGGTGGATGAAAAAGAACTTCGAGTTATTCATTACACACTTGGCCCGCTTAAACCGTGGGATTGGTGGACGTCTTGGCTGTTAAAACCTGTTGATGTCTGGCAG..........................................................................................................................................................................................................................................................AATGTCAGGGTACAACTTCAAGAATCTCTACCTGGAACTAGAGGCGGCAAAAATTCCAGAGATGAACTTCTTGTCAAATTTCTTTATTTGCTTCCATTGCTTCTGATAGCATTTTGTTACTATCGGTCGTTCTTACAG..............................................................................ACACAATCACTATGGCACCATATCAGACAAATGTACTACAAGGTCAGAGGAGGTGTCCTAGCTTATGCCTCTGTTCCTCCATCTGCCATCAGCTCCAACCAGCAG..........................................................................................................................................................................................................................................TTCCCAAATGGTATGCAGTTGAAGATGCCTACTTATCTGGGTGCGGTATCTGTCTGTGTCTGTTTTGCTGCTGCTCTTGTGTCCCTTGGTCTTCCACTTTTAATCATTCCGCGCCAAGTAATGCCATGGACTGGTCTCCTCCTTATGTACGAATGGACATTTACACTTTTCTTCCTCTTGTTCGGAAGTTATCTGCACTTAGTTTATCAGTGGGGAAGGGTTGCGGCAAATCAACCTGGTCAATTTCCGGCTCATCCTGTATCTTTGGATTATGAACCTGGAAAAG...........................................................................................GTCATCAGCGGCAACAATCATGTTGTGACAATGAAGCATGGTACTATGGGTTAGGGATGGCATTTCTTGCCATTGCAGCCCCAGCATTGCCTGGTGTTTTTGGAGTCACTTCTTTGTTTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGTTTGATGGTCGTAGGCGGCCTTATTTTGACGTCCTTCATGACATATGCTTCAGAGCATCTATCGATTAGATCATTCGCGAGGGGCTTTGAAGAAAGGAACACACCAAGGAGTAGGAGTGTGTGTTTCTTATGTTGATCATGTCAATATTTTTGGTTTTAGCTTAACTACAAGCAATCATCTTCTTGATCTCATTTGTAACTTGTTTTGACATATTCTTCCTAGTGAAAATATGTAGAATATGTTGGGAAATCATTTATTTACTAATGTGATTTTTATTTTTTTTGTTAAGGTTAAAAAGGTGTATGTTTTCTGTATATGCTTCTTAAATTTTTTGATTGATATGGATGAGGATTATTGATCAATTCTCAAGTGTTTGGAACACTTCCATACTGGTAGTCAATAGTATATACTCATTTTTGTAGCTTCTTTCTCCTTTGATTTATGTAAATATTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0YudIx/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334804" ref_strand="-" ref_description="SGN-U334804        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G08650.1 | Symbol: None | phosphoenolpyruvate carboxylase kinase, identical to phosphoenolpyruvate carboxylase kinase (Arabidopsis thaliana) gi:6318613:gb:AAF06968; contains protein kinase domain, Pfam:PF00069 | chr1:2752159-2753706 FORWARD | Aliases: None (evalue: 2e-44, score=176) genbank/nr: gi|33329262|gb|AAQ10031.1| PEPC kinase 1b [Solanum tuberosum] >gi|33329258|gb|AAQ10029.1| PEPC kinase 1b [Solanum tuberosum] (evalue: 2e-67, score=242)">
      <seq>tggggttgtgggtacgccgtattacgttgcgccggaggttttaatggggaaagagtataatgagaaagttgatgtgtggagtttgggggttattttgtatattatgctttctggggttcctcctttttacggtgaaacgccgactgaaacttttcaagctgttctcagagggaatctgaggtttccgacgaggaatttccggtcagtttcgcctgaagcgaaagatttgttgaggaagatgatatgtaaagatgtttccagaagattttcagctgaacaagtattgagacatccatgggtgcttaatggaggagaaacaagatcaatggttgattgaacttgaacaagatactaataaatactagtagcagtacaaattttgatgataaaaaagcttcttttaatgtgtttgtttgtgtatattgcaccaaaaaaataaaaataaaattatggtttgttatgttgtggagaagaatcttgtagatgataatgaatctcctactttatattataatataacaagaagaaaaaaaatttcaggctatataaaaagatccaagcttaccccacctttatatttattattattatttttaattataaagggttgagggagagagggatatatgtatgttttggtgctgtatcaaagttttgttgttgagtttactatgtaataaaaaaaatttctacttttgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-1z4Dz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="74190" stop="76068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74490" g_stop="74776" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74777" i_stop="75352" i_length="576">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75353" g_stop="75765" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="700" r_length="413" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="701" polyA_stop="716"/>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-U334804" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334804" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74490" e_stop="74776"/>
          <exon e_start="75353" e_stop="75765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAATCTGAGGTTTCCGACGAGGAATTTCCGGTCAGTTTCGCCTGAAGCGAAAGATTTGTTGAGGAAGATGATATGTAAAGATGTTTCCAGAAGATTTTCAGCTGAACAAGTATTGAGTAAGTTAAATTTAATATTTCTGTTCTCCATATCCGTATTCCGTATCGATATGCTTTATTTAAGACGAATTTATCAGAAATAGCCTCGTAGAATCTCTATCTTTAAATACGATTCATAGACATTCTATCCTTTCTAAACTTCACGTGTAGGATTAGTAATTGTTATGACATGAAATGAGCTTAAATAACGATTATTCATACTATTGAATCCCAACTTATTTAAGATTGAGACGTTGTCTTGTTTTAGTTAGTTTAGGAGCTTAGTTTCAATAAAAATTTGTTTCTTTTTTACCCCTTCATAGTGTGCTTTCTTGATGACTCGAACTTACGTAGAATACTTACCTAGAATTAGATGTGAGGGATGTTTACCATCCTAGCAACTCCCAGTCGTTCTTTTTTACCCCTTCATAGTGTGTTTCCTTGATAACTCGAACTTACGTAGAATTGAATGTGAGGGAGGCTTACCATCCCAGCAACTCCCAGTCGTTCGTTCAAAATATTTTCTTGATTGTTCAATTTAGTGTTTTCTCATTGATGAATATTATGTGATGTTGATGTTATTTTTGTTAAATACAGGACATCCATGGGTGCTTAATGGAGGAGAAACAAGATCAATGGTTGATTGAACTTGAACAAGATACTAATAAATACTAGTAGCAGTACAAATTTTGATGATAAAAAAGCTTCTTCTAATGTGTTTGTTTGTGTATATTGCACCAAAAAAATAAAAATAAAATTATGGTTTGTTATGTTGTGGAGAAGAATCTTGTAGATGATAATGAATCTCCTACTTTATATTATAATATAACAAGAAGAAAAAAAATTTCAGGCTATATAAAAAGATCCAAGCTTACCCCACCTTTATATTTATTATTATTATTTTTAATTATAAAGGGTTGAGGGAGAGAGGGATATATGTATGTTTTGGTGCTGTATCAAAGTTTTGTTGTTGAGTTTACTATGTAATAAAAAAAATTTCTACTTTTGTT</genome_strand>
        <mrna_strand>TGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAATCTGAGGTTTCCGACGAGGAATTTCCGGTCAGTTTCGCCTGAAGCGAAAGATTTGTTGAGGAAGATGATATGTAAAGATGTTTCCAGAAGATTTTCAGCTGAACAAGTATTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCCATGGGTGCTTAATGGAGGAGAAACAAGATCAATGGTTGATTGAACTTGAACAAGATACTAATAAATACTAGTAGCAGTACAAATTTTGATGATAAAAAAGCTTCTTTTAATGTGTTTGTTTGTGTATATTGCACCAAAAAAATAAAAATAAAATTATGGTTTGTTATGTTGTGGAGAAGAATCTTGTAGATGATAATGAATCTCCTACTTTATATTATAATATAACAAGAAGAAAAAAAATTTCAGGCTATATAAAAAGATCCAAGCTTACCCCACCTTTATATTTATTATTATTATTTTTAATTATAAAGGGTTGAGGGAGAGAGGGATATATGTATGTTTTGGTGCTGTATCAAAGTTTTGTTGTTGAGTTTACTATGTAATAAAAAAAATTTCTACTTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1149" PGL_stop="5136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1149" e_stop="1575"/>
            <exon e_start="1662" e_stop="1765"/>
            <exon e_start="2384" e_stop="2581"/>
            <exon e_start="2760" e_stop="3337"/>
            <exon e_start="5106" e_stop="5136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.913" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.717" acc_prob="0.836" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.971" e_score="0.993"/>
          <exon-only e_score="0.613"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1149" e_stop="1575" e_length="427"/>
          </exon>
          <intron i_serial="1" don_prob="0.913" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1576" i_stop="1661" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1662" e_stop="1765" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.717" acc_prob="0.836">
            <gDNA_intron_boundary i_start="1766" i_stop="2383" i_length="618"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2384" e_stop="2581" e_length="198"/>
          </exon>
          <intron i_serial="3" don_prob="0.916" acc_prob="0.890">
            <gDNA_intron_boundary i_start="2582" i_stop="2759" i_length="178"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="2760" e_stop="3337" e_length="578"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="3338" i_stop="5105" i_length="1768"/>
          </intron>
          <exon e_serial="5" e_score="0.613">
            <gDNA_exon_boundary e_start="5106" e_stop="5136" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1149" stop="1575"/>
              <exon start="1662" stop="1765"/>
              <exon start="2384" stop="2581"/>
              <exon start="2760" stop="3337"/>
              <exon start="5106" stop="5136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1677" stop="1765"/>
              <exon start="2384" stop="2581"/>
              <exon start="2760" stop="2903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCACTAAAGATGGAATTAATTGTTCACCTAGTTCAGAGAGCATGAAAGTTGAGGATAATTCAAAAGATGAAATACATCGTGGACCTAATCAAGATACTCATTCTTTCATTGGAGGTTCGTCTGTAAATATGGATATTGATAGACATGCCCAAGCCCCTCAGGTTGCAGATACTTGTCCTCAGTCCCGTCAACCATTCGACTGTAAACCAAATAAAGAAGGTAGCCAGAATAAGACCATGGAGTGTGCACAACCTTTATCAGGTGACTCTCCCGTCTCTCAAAACAATTTGGACAGAGGTTTTCGCCAGAAAGGTCCTCGGATTGCAAAAGTGGTGAGGAGACTCGCTTGTAATGTGGAACCTCTGGATTATGGAGTTATCCAGCCTGGGAAGTTATGGTGTGACAACCGGGTTATTTATCCCAAGG : GATTCAGGAGCCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATG : GTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAG : GCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAAGAAGGCAAACTGTGAAGAACTTCATGCATTGAACAATCTTCTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGACTCGACTTCTTAATGAAGAGATTGATAAGCGAGGTAGATGATTTTGATTTTCAGCCTCGTCGAGGCCTGGACTTCTCATAAGGAGTTAACCCTGTAAATGCTTAAGTCACATTCTAGTTTTAGGTTAAATTGCATTAGGTTAACCCCATTTCTTGAATTTTTGCACTGGCTCTTAACAGGAAGATGAAAAAAGGCTGGCACATAGTTACTTTTGGACTTTTGGTTCTTGAAATTCTTTTGAGGAAGGTTATTGAAAATAGAAAATACATTTTTCAATCTTTGTTATAGAAAAGTTCCTTAATTTATACTTGGAGATGTGAGTTTAAAA : AAACACAATTTATACAAACAGAAACGAGAAA</gDNA_template>
            <first_frame> V  T  K  D  G  I  N  C  S  P  S  S  E  S  M  K  V  E  D  N  S  K  D  E  I  H  R  G  P  N  Q  D  T  H  S  F  I  G  G  S  S  V  N  M  D  I  D  R  H  A  Q  A  P  Q  V  A  D  T  C  P  Q  S  R  Q  P  F  D  C  K  P  N  K  E  G  S  Q  N  K  T  M  E  C  A  Q  P  L  S  G  D  S  P  V  S  Q  N  N  L  D  R  G  F  R  Q  K  G  P  R  I  A  K  V  V  R  R  L  A  C  N  V  E  P  L  D  Y  G  V  I  Q  P  G  K  L  W  C  D  N  R  V  I  Y  P  K   : G  F  R  S  R  V  R  Y  I  D  V  L  D  P  T  N  M  S  H  Y  I  S  E  V  I  D  A  G  R  D  G  P  L  F  M  :  V  T  L  E  R  C  P  N  E  V  F  V  H  L  S  P  V  K  C  W  D  M  V  R  E  R  V  N  Q  E  I  L  K  Q  H  K  L  G  K  P  K  L  L  P  L  Q  P  P  G  S  V  E  G  M  E  M  F  G  F  S  T  T  E  I  V  Q  :  A  I  Q  D  M  D  I  N  R  V  C  S  E  F  W  K  S  K  P  L  M  Q  T  V  Q  S  S  L  V  V  D  R  S  K  L  N  I  K  S  E  I  S  N  D  P  T  R  A  D  I  V  L  S  G  L  L  K  K  A  N  C  E  E  L  H  A  L  N  N  L  L  K  T  N  N  L  T  P  N  Q  G  L  M  T  R  L  L  N  E  E  I  D  K  R  G  R  *  F  *  F  S  A  S  S  R  P  G  L  L  I  R  S  *  P  C  K  C  L  S  H  I  L  V  L  G  *  I  A  L  G  *  P  H  F  L  N  F  C  T  G  S  *  Q  E  D  E  K  R  L  A  H  S  Y  F  W  T  F  G  S  *  N  S  F  E  E  G  Y  *  K  *  K  I  H  F  S  I  F  V  I  E  K  F  L  N  L  Y  L  E  M  *  V  *  K :   N  T  I  Y  T  N  R  N  E  K </first_frame>
            <second_frame>  S  L  K  M  E  L  I  V  H  L  V  Q  R  A  *  K  L  R  I  I  Q  K  M  K  Y  I  V  D  L  I  K  I  L  I  L  S  L  E  V  R  L  *  I  W  I  L  I  D  M  P  K  P  L  R  L  Q  I  L  V  L  S  P  V  N  H  S  T  V  N  Q  I  K  K  V  A  R  I  R  P  W  S  V  H  N  L  Y  Q  V  T  L  P  S  L  K  T  I  W  T  E  V  F  A  R  K  V  L  G  L  Q  K  W  *  G  D  S  L  V  M  W  N  L  W  I  M  E  L  S  S  L  G  S  Y  G  V  T  T  G  L  F  I  P  R  :  D  S  G  A  G  S  D  T  L  M  F  *  I  Q  Q  I  C  L  T  I  F  L  K  L  *  M  Q  D  E  M  A  H  C  L  W :   L  H  L  S  V  V  P  M  K  C  L  F  T  C  P  L  L  N  A  G  I  W  S  A  R  E  *  I  K  K  F  *  S  N  I  S  W  E  S  Q  S  F  C  L  C  N  H  L  E  V  L  R  A  W  K  C  L  V  F  Q  Q  Q  R  L  Y  R :   P  F  K  I  W  I  *  T  G  Y  V  L  N  S  G  N  L  N  P  *  C  R  L  Y  N  L  P  *  L  W  T  V  Q  N  S  I  *  N  P  R  S  Q  M  I  L  L  E  L  I  *  F  *  V  A  Y  L  R  R  Q  T  V  K  N  F  M  H  *  T  I  F  S  K  P  I  I  *  P  L  I  K  V  *  *  L  D  F  L  M  K  R  L  I  S  E  V  D  D  F  D  F  Q  P  R  R  G  L  D  F  S  *  G  V  N  P  V  N  A  *  V  T  F  *  F  *  V  K  L  H  *  V  N  P  I  S  *  I  F  A  L  A  L  N  R  K  M  K  K  G  W  H  I  V  T  F  G  L  L  V  L  E  I  L  L  R  K  V  I  E  N  R  K  Y  I  F  Q  S  L  L  *  K  S  S  L  I  Y  T  W  R  C  E  F  K   : K  T  Q  F  I  Q  T  E  T  R   </second_frame>
            <third_frame>   H  *  R  W  N  *  L  F  T  *  F  R  E  H  E  S  *  G  *  F  K  R  *  N  T  S  W  T  *  S  R  Y  S  F  F  H  W  R  F  V  C  K  Y  G  Y  *  *  T  C  P  S  P  S  G  C  R  Y  L  S  S  V  P  S  T  I  R  L  *  T  K  *  R  R  *  P  E  *  D  H  G  V  C  T  T  F  I  R  *  L  S  R  L  S  K  Q  F  G  Q  R  F  S  P  E  R  S  S  D  C  K  S  G  E  E  T  R  L  *  C  G  T  S  G  L  W  S  Y  P  A  W  E  V  M  V  *  Q  P  G  Y  L  S  Q  G :   I  Q  E  P  G  Q  I  H  *  C  F  R  S  N  K  Y  V  S  L  Y  F  *  S  Y  R  C  R  T  R  W  P  T  V  Y   : G  Y  T  *  A  L  S  Q  *  S  V  C  S  L  V  P  C  *  M  L  G  Y  G  P  R  E  S  E  S  R  N  F  K  A  T  *  V  G  K  A  K  A  F  A  F  A  T  T  W  K  C  *  G  H  G  N  V  W  F  F  N  N  R  D  C  T   : G  H  S  R  Y  G  Y  K  P  G  M  F  *  I  L  E  I  *  T  L  D  A  D  C  T  I  F  P  S  C  G  P  F  K  T  Q  Y  K  I  R  D  L  K  *  S  Y  S  S  *  Y  S  S  E  W  P  T  *  E  G  K  L  *  R  T  S  C  I  E  Q  S  S  Q  N  Q  *  F  D  P  *  S  R  F  N  D  S  T  S  *  *  R  D  *  *  A  R  *  M  I  L  I  F  S  L  V  E  A  W  T  S  H  K  E  L  T  L  *  M  L  K  S  H  S  S  F  R  L  N  C  I  R  L  T  P  F  L  E  F  L  H  W  L  L  T  G  R  *  K  K  A  G  T  *  L  L  L  D  F  W  F  L  K  F  F  *  G  R  L  L  K  I  E  N  T  F  F  N  L  C  Y  R  K  V  P  *  F  I  L  G  D  V  S  L  K  :  K  H  N  L  Y  K  Q  K  R  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1149" stop="1575"/>
                    <exon start="1662" stop="1765"/>
                    <exon start="2384" stop="2581"/>
                    <exon start="2760" stop="3050"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTKDGINCSPSSESMKVEDNSKDEIHRGPNQDTHSFIGGSSVNMDIDRHAQAPQVADTCPQSRQPFDCKPNKEGSQNKTMECAQPLSGDSPVSQNNLDRGFRQKGPRIAKVVRRLACNVEPLDYGVIQPGKLWCDNRVIYPKGFRSRVRYIDVLDPTNMSHYISEVIDAGRDGPLFMVTLERCPNEVFVHLSPVKCWDMVRERVNQEILKQHKLGKPKLLPLQPPGSVEGMEMFGFSTTEIVQAIQDMDINRVCSEFWKSKPLMQTVQSSLVVDRSKLNIKSEISNDPTRADIVLSGLLKKANCEELHALNNLLKTNNLTPNQGLMTRLLNEEIDKRGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="13988" PGL_stop="13340"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13988" e_stop="13340"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="13988" e_stop="13340" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13988" stop="13340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTTGCTAAAAAAGGCAGAACGTCAGTTGGCAGACCATCAACTCTTGCTCTTCTCCCCTCCAGCGTCAACAACAATTCAACTAGTTCTGCTGCTAAGAAGAAGCAAAAACGAAAGAGATTATCAAGATTATGCTGATTGCTTGTGGAAGATGGACAAATTTCTCATATGGAACTTTGCATGGGTGCCAACTTTTTTCCCGGCAGCTACAGCCCTGGCCGTTTCATTTGCCAATGACTATTCCGCGCTTGATTCCTTGATCATATCCCATCAGTTGGTTCCCTGAATACCTAATATTCCCATTTGGTGCTGTTTTAACCAACATGATGTCGCCACCAACCAGACAGTCAGATCAATGCCAATCCTCGTGTATCAAGCAATTGACTGGTTTCAAGAAATGACCAGAGAAATTTGCTCATCCAGCAAGAAACTTACCGGTGAATGTGAAATCAGAGCTTCGTTGGTGTAGATGCAAGGTGATTTTGTGGCTACATCAGAAATTATCTGCGAGTATGTTCTCTTCTAGCTTGAGATTTTAGAAAAATTGACCTTTGAACCCGGTATGTTTTCACTTGTCCTAATCATCTACACAAATCTGGAAGCAGAAATTTTGTAGAAAATGAATGTTCATATGGATGATTCTCTTATTG</gDNA_template>
            <first_frame> G  L  L  K  K  A  E  R  Q  L  A  D  H  Q  L  L  L  F  S  P  P  A  S  T  T  I  Q  L  V  L  L  L  R  R  S  K  N  E  R  D  Y  Q  D  Y  A  D  C  L  W  K  M  D  K  F  L  I  W  N  F  A  W  V  P  T  F  F  P  A  A  T  A  L  A  V  S  F  A  N  D  Y  S  A  L  D  S  L  I  I  S  H  Q  L  V  P  *  I  P  N  I  P  I  W  C  C  F  N  Q  H  D  V  A  T  N  Q  T  V  R  S  M  P  I  L  V  Y  Q  A  I  D  W  F  Q  E  M  T  R  E  I  C  S  S  S  K  K  L  T  G  E  C  E  I  R  A  S  L  V  *  M  Q  G  D  F  V  A  T  S  E  I  I  C  E  Y  V  L  F  *  L  E  I  L  E  K  L  T  F  E  P  G  M  F  S  L  V  L  I  I  Y  T  N  L  E  A  E  I  L  *  K  M  N  V  H  M  D  D  S  L  I  </first_frame>
            <second_frame>  G  C  *  K  R  Q  N  V  S  W  Q  T  I  N  S  C  S  S  P  L  Q  R  Q  Q  Q  F  N  *  F  C  C  *  E  E  A  K  T  K  E  I  I  K  I  M  L  I  A  C  G  R  W  T  N  F  S  Y  G  T  L  H  G  C  Q  L  F  S  R  Q  L  Q  P  W  P  F  H  L  P  M  T  I  P  R  L  I  P  *  S  Y  P  I  S  W  F  P  E  Y  L  I  F  P  F  G  A  V  L  T  N  M  M  S  P  P  T  R  Q  S  D  Q  C  Q  S  S  C  I  K  Q  L  T  G  F  K  K  *  P  E  K  F  A  H  P  A  R  N  L  P  V  N  V  K  S  E  L  R  W  C  R  C  K  V  I  L  W  L  H  Q  K  L  S  A  S  M  F  S  S  S  L  R  F  *  K  N  *  P  L  N  P  V  C  F  H  L  S  *  S  S  T  Q  I  W  K  Q  K  F  C  R  K  *  M  F  I  W  M  I  L  L  L </second_frame>
            <third_frame>   V  A  K  K  G  R  T  S  V  G  R  P  S  T  L  A  L  L  P  S  S  V  N  N  N  S  T  S  S  A  A  K  K  K  Q  K  R  K  R  L  S  R  L  C  *  L  L  V  E  D  G  Q  I  S  H  M  E  L  C  M  G  A  N  F  F  P  G  S  Y  S  P  G  R  F  I  C  Q  *  L  F  R  A  *  F  L  D  H  I  P  S  V  G  S  L  N  T  *  Y  S  H  L  V  L  F  *  P  T  *  C  R  H  Q  P  D  S  Q  I  N  A  N  P  R  V  S  S  N  *  L  V  S  R  N  D  Q  R  N  L  L  I  Q  Q  E  T  Y  R  *  M  *  N  Q  S  F  V  G  V  D  A  R  *  F  C  G  Y  I  R  N  Y  L  R  V  C  S  L  L  A  *  D  F  R  K  I  D  L  *  T  R  Y  V  F  T  C  P  N  H  L  H  K  S  G  S  R  N  F  V  E  N  E  C  S  Y  G  *  F  S  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13988" stop="13704"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLLKKAERQLADHQLLLFSPPASTTIQLVLLLRRSKNERDYQDYADCLWKMDKFLIWNFAWVPTFFPAATALAVSFANDYSALDSLIISHQLVP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="20911" PGL_stop="15835"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20911" e_stop="20834"/>
            <exon e_start="18233" e_stop="17952"/>
            <exon e_start="16175" e_stop="15835"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20911" e_stop="20834" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.995">
            <gDNA_intron_boundary i_start="20833" i_stop="18234" i_length="2600"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18233" e_stop="17952" e_length="282"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17951" i_stop="16176" i_length="1776"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="16175" e_stop="15835" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20911" stop="20834"/>
              <exon start="18233" stop="17952"/>
              <exon start="16175" stop="15835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342292" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAGAAGAAGAAAGAATCTTTAATACTCTAATAATTTGCTTACTTCACCACAAGAACAAGAATTCTTCTTCTGGG : AATATTTTAGAAGATGGAGATAGTTGAGTCCATTCCTGATCTTGCCGTGCAAGATCCGCCTGGTGAAGACTTCTCGGCATCTGATTTGAGTTGGACCAAATTCGGAACTGAAGAACGACATGATGATGTTGCCCTTATTCATTATGATCGAGTTGATGCCTTTATCATTGGAGAGTGTTGTAATGTGGAATTCCCAACAAGGTTTCACATTGAGAGGGGAAGGAAAAGAAGCAAAGGCAGTTTAAAGGAGTACAAGCCTGATGAATATTTGGAGCACAGGCT : GTATTGGTGTTCCTTTGGCCCAGAAAATTACGGAGAAGGTGGTGGTATTTTACCAAGTCGACGATATAGGCTTAACACTCGAAACCGTGCCGCTAGACCCCAGTCAATGAGGGGCTGCACTTGTCATTTTATAGTGAAGCGTTTGTATGCCCGTCCATCTCTTGCACTTCTTATATATAACAACAGGCGTCATGTTAACAAGTCTGGTTTTGTATGCCATGGGCCACTTGATAGAGATGCTATTGGCCCTGGTGCAAAAAATATACCTTACATTTGCAATGAGATTCAACAGCAAACTATGTCTATGATCTATCTTGGCATTCCCGAGGAGAATGTTTTAG</gDNA_template>
            <first_frame> K  K  E  E  E  R  I  F  N  T  L  I  I  C  L  L  H  H  K  N  K  N  S  S  S  G  :  N  I  L  E  D  G  D  S  *  V  H  S  *  S  C  R  A  R  S  A  W  *  R  L  L  G  I  *  F  E  L  D  Q  I  R  N  *  R  T  T  *  *  C  C  P  Y  S  L  *  S  S  *  C  L  Y  H  W  R  V  L  *  C  G  I  P  N  K  V  S  H  *  E  G  K  E  K  K  Q  R  Q  F  K  G  V  Q  A  *  *  I  F  G  A  Q  A  :  V  L  V  F  L  W  P  R  K  L  R  R  R  W  W  Y  F  T  K  S  T  I  *  A  *  H  S  K  P  C  R  *  T  P  V  N  E  G  L  H  L  S  F  Y  S  E  A  F  V  C  P  S  I  S  C  T  S  Y  I  *  Q  Q  A  S  C  *  Q  V  W  F  C  M  P  W  A  T  *  *  R  C  Y  W  P  W  C  K  K  Y  T  L  H  L  Q  *  D  S  T  A  N  Y  V  Y  D  L  S  W  H  S  R  G  E  C  F   </first_frame>
            <second_frame>  K  K  K  K  K  E  S  L  I  L  *  *  F  A  Y  F  T  T  R  T  R  I  L  L  L  G :   I  F  *  K  M  E  I  V  E  S  I  P  D  L  A  V  Q  D  P  P  G  E  D  F  S  A  S  D  L  S  W  T  K  F  G  T  E  E  R  H  D  D  V  A  L  I  H  Y  D  R  V  D  A  F  I  I  G  E  C  C  N  V  E  F  P  T  R  F  H  I  E  R  G  R  K  R  S  K  G  S  L  K  E  Y  K  P  D  E  Y  L  E  H  R  L :   Y  W  C  S  F  G  P  E  N  Y  G  E  G  G  G  I  L  P  S  R  R  Y  R  L  N  T  R  N  R  A  A  R  P  Q  S  M  R  G  C  T  C  H  F  I  V  K  R  L  Y  A  R  P  S  L  A  L  L  I  Y  N  N  R  R  H  V  N  K  S  G  F  V  C  H  G  P  L  D  R  D  A  I  G  P  G  A  K  N  I  P  Y  I  C  N  E  I  Q  Q  Q  T  M  S  M  I  Y  L  G  I  P  E  E  N  V  L  </second_frame>
            <third_frame>   K  R  R  R  K  N  L  *  Y  S  N  N  L  L  T  S  P  Q  E  Q  E  F  F  F  W   : E  Y  F  R  R  W  R  *  L  S  P  F  L  I  L  P  C  K  I  R  L  V  K  T  S  R  H  L  I  *  V  G  P  N  S  E  L  K  N  D  M  M  M  L  P  L  F  I  M  I  E  L  M  P  L  S  L  E  S  V  V  M  W  N  S  Q  Q  G  F  T  L  R  G  E  G  K  E  A  K  A  V  *  R  S  T  S  L  M  N  I  W  S  T  G   : C  I  G  V  P  L  A  Q  K  I  T  E  K  V  V  V  F  Y  Q  V  D  D  I  G  L  T  L  E  T  V  P  L  D  P  S  Q  *  G  A  A  L  V  I  L  *  *  S  V  C  M  P  V  H  L  L  H  F  L  Y  I  T  T  G  V  M  L  T  S  L  V  L  Y  A  M  G  H  L  I  E  M  L  L  A  L  V  Q  K  I  Y  L  T  F  A  M  R  F  N  S  K  L  C  L  *  S  I  L  A  F  P  R  R  M  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18223" stop="17952"/>
                    <exon start="16175" stop="15836"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEIVESIPDLAVQDPPGEDFSASDLSWTKFGTEERHDDVALIHYDRVDAFIIGECCNVEFPTRFHIERGRKRSKGSLKEYKPDEYLEHRLYWCSFGPENYGEGGGILPSRRYRLNTRNRAARPQSMRGCTCHFIVKRLYARPSLALLIYNNRRHVNKSGFVCHGPLDRDAIGPGAKNIPYICNEIQQQTMSMIYLGIPEENVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="28137" PGL_stop="22403"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28137" e_stop="28052"/>
            <exon e_start="27614" e_stop="27553"/>
            <exon e_start="26366" e_stop="25914"/>
            <exon e_start="25476" e_stop="25365"/>
            <exon e_start="24847" e_stop="24797"/>
            <exon e_start="24579" e_stop="24508"/>
            <exon e_start="24435" e_stop="24303"/>
            <exon e_start="24227" e_stop="24169"/>
            <exon e_start="23519" e_stop="23419"/>
            <exon e_start="22812" e_stop="22746"/>
            <exon e_start="22659" e_stop="22403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.578" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.532" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.917" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28137" e_stop="28052" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="28051" i_stop="27615" i_length="437"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27614" e_stop="27553" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="27552" i_stop="26367" i_length="1186"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26366" e_stop="25914" e_length="453"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.578">
            <gDNA_intron_boundary i_start="25913" i_stop="25477" i_length="437"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25476" e_stop="25365" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25364" i_stop="24848" i_length="517"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24847" e_stop="24797" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.532">
            <gDNA_intron_boundary i_start="24796" i_stop="24580" i_length="217"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24579" e_stop="24508" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24507" i_stop="24436" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24435" e_stop="24303" e_length="133"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="24302" i_stop="24228" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24227" e_stop="24169" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24168" i_stop="23520" i_length="649"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="23519" e_stop="23419" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.978" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23418" i_stop="22813" i_length="606"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="22812" e_stop="22746" e_length="67"/>
          </exon>
          <intron i_serial="10" don_prob="0.981" acc_prob="0.917">
            <gDNA_intron_boundary i_start="22745" i_stop="22660" i_length="86"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="22659" e_stop="22403" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28137" stop="28052"/>
              <exon start="27614" stop="27553"/>
              <exon start="26366" stop="25914"/>
              <exon start="25476" stop="25365"/>
              <exon start="24847" stop="24797"/>
              <exon start="24579" stop="24508"/>
              <exon start="24435" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320165" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTGATAAAATCCAAAAAATTAAAATAAATTTGCATGCATGTAATTAAATGTGCTTATTTGCTGTCTCATACTCAGACCTAACAG : TTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAA : TTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCA : CTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTT : GCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCG : GTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTGCCAGG : GCCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAGGCTAAGATTTTGGCTG : CGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATT : GTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAG : AGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAG : CGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGAATGTTGGCTC</gDNA_template>
            <first_frame> L  *  *  N  P  K  N  *  N  K  F  A  C  M  *  L  N  V  L  I  C  C  L  I  L  R  P  N  S :   *  V  N  C  L  S  S  I  A  *  I  E  E  S  E  K  R  S  L  *   : I  Q  *  R  W  W  *  E  L  W  I  F  A  Q  T  P  S  L  D  Q  L  K  P  C  G  T  Q  W  R  M  L  K  W  M  M  M  S  *  V  M  I  Q  Q  P  N  A  L  K  Q  R  W  Q  G  *  R  A  R  K  Q  D  Y  L  F  L  L  A  L  W  V  T  L  S  V  C  *  L  I  A  K  S  G  A  V  R  L  F  S  V  I  I  P  I  S  I  F  M  K  M  E  A  F  P  P  L  E  V  F  I  Q  G  Q  *  R  T  M  K  M  V  R  W  I  L  I  *  L  K  L  R  F  E  I  L  A  L  K  Y  V  T  Q  P  L  G  *  S  A  W  R  I  R  K  L   : T  Q  G  A  D  A  F  L  R  S  T  Q  T  K  L  E  S  *  Q  R  S  M  V  *  S  S  T  L  M  E  L  V  Y  S  M  H  Q  L :   H  L  E  C  L  F  I  G  L  Y  R  Q  L  I  Q  F  R :   Y  A  Y  Q  K  V  L  V  L  Q  L  D  L  *  L  L  V  R  R  A  S  L  P  G :   P  K  S  *  G  R  L  *  A  V  E  *  G  K  L  E  S  F  A  L  L  L  L  P  L  Y  K  R  I  L  L  S  W  K  E  I  T  E  R  L  R  F  W  L  :  R  N  L  T  K  S  K  G  L  K  L  M  L  P  L  *  R  P  T  L :   Y  I  A  T  Y  *  R  G  Q  G  S  V  K  Q  S  W  S  R  L  W  N  N  M  V  Y  L  Y  Y  Q  K  A  H  *   : E  S  D  L  F  Y  T  T  R  F  Q  K  V  M  Y  T  M  Q  C  L  A  F  S :   E  L  *  Q  E  W  L  K  K  M  V  T  S  N  R  I  N  R  F  Q  T  *  S  L  S  V  R  N  C  S  K  C  L  H  G  R  E  T  S  F  I  F  K  F  *  S  N  L  *  T  S  H  F  M  S  F  *  *  S  K  D  F  V  C  S  S  Y  V  C  C  W  T  S  L  S  *  *  F  S  K  K  *  M  L  A  </first_frame>
            <second_frame>  F  D  K  I  Q  K  I  K  I  N  L  H  A  C  N  *  M  C  L  F  A  V  S  Y  S  D  L  T   : V  E  *  I  V  S  L  A  L  L  E  L  K  N  Q  R  R  E  A  Y  K  :  F  S  E  D  G  G  K  N  C  G  S  S  L  R  H  R  H  *  T  N  *  S  H  A  E  R  N  G  E  C  *  S  G  *  *  C  L  R  L  *  S  N  S  P  T  P  *  S  R  D  G  K  D  N  G  Q  G  S  R  I  I  C  S  F  W  H  Y  G  *  P  Y  Q  C  A  D  S  L  P  N  Q  G  Q  *  D  Y  S  R  *  L  F  P  Y  P  Y  L  *  K  W  R  H  F  H  P  W  R  C  S  S  K  D  S  E  E  Q  *  R  W  Y  D  G  S  *  S  D  *  S  C  D  S  R  S  *  L  *  N  M  L  P  N  H  *  A  D  L  L  G  E  F  A  S  S  :  L  R  G  Q  M  P  F  C  G  V  H  R  Q  S  W  R  A  S  K  E  V  W  S  E  A  P  H  *  W  S  S  Y  I  Q  C  I  S   : C  T  W  S  A  C  S  *  A  C  T  G  S  *  F  S  F   : G  M  L  I  K  R  S  W  C  S  S  W  I  C  D  C  W  F  E  E  L  H  C  Q   : G  Q  N  P  E  E  D  S  R  R  W  N  E  A  N  W  S  P  L  R  C  C  F  Y  R  F  T  R  E  S  C  *  A  G  R  R  S  Q  K  G  *  D  F  G  C :   G  T  *  Q  N  Q  R  A  *  S  *  C  C  H  C  R  D  Q  H   : C  I  L  R  H  T  E  G  V  K  D  Q  *  S  R  V  G  Q  D  F  G  T  I  W  F  T  Y  T  T  R  R  P  T  E  :  S  Q  I  C  S  T  P  P  D  F  R  K  *  C  T  L  C  S  V  L  H  S   : A  S  F  S  R  S  G  *  R  K  W  *  Q  V  T  G  *  I  G  F  R  H  D  L  F  L  L  E  T  V  P  N  V  Y  M  G  E  R  P  V  S  F  S  N  F  S  Q  I  F  K  L  L  I  S  C  P  F  N  D  Q  K  T  L  F  V  L  H  M  F  V  V  G  L  V  C  P  N  D  L  V  R  N  E  C  W  L </second_frame>
            <third_frame>   L  I  K  S  K  K  L  K  *  I  C  M  H  V  I  K  C  A  Y  L  L  S  H  T  Q  T  *  Q  :  L  S  E  L  S  L  *  H  C  L  N  *  R  I  R  E  E  K  L  I  N :   S  V  K  M  V  V  R  T  V  D  L  R  S  D  T  V  T  R  P  T  E  A  M  R  N  A  M  A  N  A  E  V  D  D  D  V  L  G  Y  D  P  T  A  Q  R  L  E  A  E  M  A  R  I  T  G  K  E  A  G  L  F  V  P  S  G  T  M  G  N  L  I  S  V  L  T  H  C  Q  I  R  G  S  E  I  I  L  G  D  Y  S  H  I  H  I  Y  E  N  G  G  I  S  T  L  G  G  V  H  P  R  T  V  K  N  N  E  D  G  T  M  D  L  D  L  I  E  A  A  I  R  D  P  S  F  E  I  C  Y  P  T  T  R  L  I  C  L  E  N  S  Q  A  H :   S  G  G  R  C  L  S  A  E  Y  T  D  K  V  G  E  L  A  K  K  Y  G  L  K  L  H  I  D  G  A  R  I  F  N  A  S  V  :  A  L  G  V  P  V  H  R  L  V  Q  A  A  D  S  V  S  :  V  C  L  S  K  G  L  G  A  P  V  G  S  V  I  V  G  S  K  S  F  I  A  R  :  A  K  I  L  R  K  T  L  G  G  G  M  R  Q  I  G  V  L  C  A  A  A  F  T  A  L  Q  E  N  L  V  K  L  E  G  D  H  R  K  A  K  I  L  A   : A  E  L  N  K  I  K  G  L  K  V  D  V  A  T  V  E  T  N  I  :  V  Y  C  D  I  L  K  G  S  R  I  S  E  A  E  L  V  K  T  L  E  Q  Y  G  L  L  I  L  P  E  G  P  L  R :   V  R  F  V  L  H  H  Q  I  S  E  S  D  V  H  Y  A  V  S  C  I  Q  :  R  A  L  A  G  V  A  E  E  N  G  D  K  *  P  D  K  S  V  S  D  M  I  S  F  C  *  K  L  F  Q  M  F  T  W  E  R  D  Q  F  H  F  Q  I  L  V  K  S  L  N  F  S  F  H  V  L  L  M  I  K  R  L  C  L  F  F  I  C  L  L  L  D  *  F  V  L  M  I  *  *  E  M  N  V  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27578" stop="27553"/>
                    <exon start="26366" stop="25914"/>
                    <exon start="25476" stop="25365"/>
                    <exon start="24847" stop="24797"/>
                    <exon start="24579" stop="24508"/>
                    <exon start="24435" stop="24303"/>
                    <exon start="24227" stop="24169"/>
                    <exon start="23519" stop="23419"/>
                    <exon start="22812" stop="22746"/>
                    <exon start="22659" stop="22618"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIREEKLINSVKMVVRTVDLRSDTVTRPTEAMRNAMANAEVDDDVLGYDPTAQRLEAEMARITGKEAGLFVPSGTMGNLISVLTHCQIRGSEIILGDYSHIHIYENGGISTLGGVHPRTVKNNEDGTMDLDLIEAAIRDPSFEICYPTTRLICLENSQAHSGGRCLSAEYTDKVGELAKKYGLKLHIDGARIFNASVALGVPVHRLVQAADSVSVCLSKGLGAPVGSVIVGSKSFIARAKILRKTLGGGMRQIGVLCAAAFTALQENLVKLEGDHRKAKILAAELNKIKGLKVDVATVETNIVYCDILKGSRISEAELVKTLEQYGLLILPEGPLRVRFVLHHQISESDVHYAVSCIQRALAGVAEENGDK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22609" stop="22403"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGFRHDLFLLETVPNVYMGERPVSFSNFSQIFKLLISCPFNDQKTLFVLHMFVVGLVCPNDLVRNECWL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="33105" PGL_stop="32754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33105" e_stop="32754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="33105" e_stop="32754" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33105" stop="32754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338416" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACGGTAAATTCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAGTCTTGCAGATCCTCTTACAAAGGCCTTAACAAGAGAAAAGGTTTGGAGCACATCGAGGGGGATGGGATTGAAGCCTACAAATTCTTAAGTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTCCCCTCCCTATGATGTGAGTGCATTATTTCCTGTAGTTTGTGAAGGTTGAGTTGATAAAAC</gDNA_template>
            <first_frame> N  G  K  F  R  P  I  R  R  K  H  S  N  V  R  S  Y  L  T  N  G  T  I  N  V  E  Y  V  K  S  C  D  S  L  A  D  P  L  T  K  A  L  T  R  E  K  V  W  S  T  S  R  G  M  G  L  K  P  T  N  S  *  V  I  Y  E  E  T  Q  P  G  D  *  R  S  Y  N  Q  V  Q  R  E  K  L  I  I  *  *  L  V  V  K  N  A  L  F  F  P  L  P  M  M  *  V  H  Y  F  L  *  F  V  K  V  E  L  I  K  </first_frame>
            <second_frame>  T  V  N  S  D  L  *  G  G  N  T  V  M  *  D  R  I  *  Q  M  V  P  L  M  L  S  M  S  N  L  V  I  V  L  Q  I  L  L  Q  R  P  *  Q  E  K  R  F  G  A  H  R  G  G  W  D  *  S  L  Q  I  L  K  S  Y  M  R  K  P  N  L  G  T  R  D  P  I  T  R  F  K  G  K  N  *  S  Y  D  D  L  L  *  K  M  H  Y  F  F  P  S  L  *  C  E  C  I  I  S  C  S  L  *  R  L  S  *  *  N </second_frame>
            <third_frame>   R  *  I  Q  T  Y  K  E  E  T  Q  *  C  K  I  V  F  D  K  W  Y  H  *  C  *  V  C  Q  I  L  *  *  S  C  R  S  S  Y  K  G  L  N  K  R  K  G  L  E  H  I  E  G  D  G  I  E  A  Y  K  F  L  S  H  I  *  G  N  P  T  W  G  L  E  I  L  *  P  G  S  K  G  K  T  N  H  M  M  T  C  C  E  K  C  T  I  F  S  P  P  Y  D  V  S  A  L  F  P  V  V  C  E  G  *  V  D  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0008H22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="45156" PGL_stop="39840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45156" e_stop="44769"/>
            <exon e_start="43821" e_stop="42127"/>
            <exon e_start="41378" e_stop="41097"/>
            <exon e_start="40842" e_stop="39840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.911" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45156" e_stop="44769" e_length="388"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44768" i_stop="43822" i_length="947"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43821" e_stop="42127" e_length="1695"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42126" i_stop="41379" i_length="748"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41378" e_stop="41097" e_length="282"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.911">
            <gDNA_intron_boundary i_start="41096" i_stop="40843" i_length="254"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40842" e_stop="39840" e_length="1003"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45156" stop="44769"/>
              <exon start="43821" stop="42127"/>
              <exon start="41378" stop="41097"/>
              <exon start="40842" stop="39840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCATCAGCTTCGGAGCTAAAAACCGATTCCGAAATATCTTCTCGTCGGAGCGGAAAAACGCCGCCGCGGCCTGAATCTACTCTACCGGAGACCGTCATTTCTCGCCGGCGTATAGATTTCAGCTCATTTACAGGCAAAATCTGAGGTATACTTATCCAAAACCCTAGATTTCTCGGAGTCTCCCTTGGGAGACTGAAATAGTTAGCAAACATGAGGATTATGATAAAGGGAGGAGTATGGAAGAACACGGAGGATGAGATTCTAAAGGCGGCGGTGATGAAGTATGGGAAGAATCAGTGGGCTCGTATTTCTTCTTTACTTGTTCGTAAATCTGCTAAGCAGTGTAAAGCTCGCTGGTATGAATGGCTCGATCCTTCAATTAAGAAG : ACTGAATGGACTAGAGAGGAGGATGAAAAACTACTTCACCTTGCAAAACTCATGCCTACCCAATGGAGGACAATTGCGCCAATCGTTGGCCGTACACCATCACAATGCCTTGAACGTTATGAGAAGCTTCTCGATGCAGCATGTACTAAGGATGAGAACTATGATCCTAATGATGATCCAAGAAAATTGAAGCCCGGAGAGATTGATCCTAACCCGGAATCAAAGCCTGCTCGTCCTGATCCTGTTGATATGGATGAGGACGAGAAAGAAATGCTTTCTGAAGCACGGGCTAGGTTGGCCAACACAAGAGGCAAGAAGGCTAAAAGGAAAGCCAGAGAAAAGCAGCTTGAAGAGGCGCGGAGGCTTGCTTCTTTACAGAAGAGGAGAGAACTGAAGGCTGCTGGAATAGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTAGAAGGTGAAAGGAGAGTCGATAAGGAAGCTCGCCTAAGGAAGCAGGATATTGCGAGGAACAAAATTGCAGAGAGACAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAGGAAGAGGTCGAAACTGAATCTTCCAGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATTGGGGGAGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACCTCAAAGAACCCCTTCAACTAAGCAAGACGCCATTATGATGGAAGCAGAAAATCAACGAAGATTGACTCAATCTCAAACACCATTACTTGGAGGAGATAATCCTTTGTTGCACCCCTCAGATTTCTCGGGTGTCACTCCTAAGAAAAGGGAGGTTCAAACTCCAAACCCACTTTTAACTCCTTCAGCGACTCCTGGAGCCACGAGCCTTACTCCTAGAATTGGCATGACACCTTCGAGAGATTCTTATGGGATGACACCCAAAGGAACTCCTATGAGGGACGAGCTACGCATTAATGAAGAAATGGATATGCATAGTAATGCTAAACTGGGGCAATTTAATTCAAAAAAAGAATTGCTTTCTGGTTTGAAAAGCCTTCCTCAGCCCAAGAATGAGTACCAGATTGTCATCCAACAACCTCCTGAAGAAAATGAAGAACCAGAAGAGAAGATCGAAGAAGACATGTCTGATAGGATTGCCAGGGAGAAGGCTGAAGAAGAAGCAAAGCGACAAGCATTACTCCGTAAAAGGTCAAAAGTATTGCAAAGGGAGCTCCCTAGACCTCCCATTGCTTCTCTAGAACTAATAAAGAGTTCCTTGATGAGAGCTGATGAGGACAAGAGCTCCTTTGTTCCTCCTACACTAATTGAGCAGGCTGATGAAATGATTAGAAAGGAACTTGTGTCCTTGCTAGAACATGATAATACCAAGTACCCTCTAGATGAGAAGCCAGAGAAGGAGAAGAAAAAGGGGGTCAAGCGAAAAATTGTTGCTGAACCTGCTATTGAGGATTTTGAGGAAGATGAATTAAAAGAG : GCCGATGGATTGATCAAGGATGAGGCTCACTTTCTTCGTGTGGCAATGGGACATGAGAGTGAATCTCTTGATGAATTTGTCGAAATACACAAAGCAACTTTGAATGATATCATGTACTTTCCTACCCGAAATGCTTATGGTCTCTCAAGTGTTGCTGGAAACATGGAAAAGCTTGCTGCTTTGCAGAACGAGTTTGAGAATGTGAAGAAAAAAATGGACGATGATACTAAGAAAGCAACAAAACTTGAGCAAAAGATCAAAGTTCTTACTAATGGATATCAG : ATGCGAGCTGGAAAGCTTTGGTCACAGATAGAGTCAACCTTCAAGAAAATGGACACAGCGGGTACAGAGCTTGAATGCTTCCGAGCATTACAAAAACAAGAGCAGCTAGCAGCATCCCACAGGATCAACAATATGTGGGAAGAAGTTCAGAAGCAAAAGGAGCTTGAGCGTACTTTACAGAAAAGGTACGGTGACCTCATAGCAGATACGCAAAAGATCCAGCATCTCATGGATGAGTATAGAATACAAGATCAAATGCAGGAAGAAGTTGCAGCAAAAAATCGTGCTCTTGAGTTGGCGAAGGCAGAAATGGCAGAAAAAGATAGTGTACCATCTGCTGATGATGTGGAACCTTCAGGTACCGGACAGAATTCCAATACAGAGGAAAATTCTGCTTCTGCCTCTCATGTGCCAATAGAAGCTGATGTGCATGTAGAGCCTTCAGGTACCAACCAGTGCTCTAATGCAGAGGAAAATTCTGCTTCTATTGAAGCTGATAATGTGCATGTGGAGCCCTCAGGTACTAGCCAGTGCCCCATTGCAGAGGAAACTTCTGCCTCCATCTCTCATGACACAACTCCTCGAGACGTTGATGGACAGGTGCAAGTGGCTGACGTTTCCACAATGGACTCTGAAGCCATAAGTGACCATGTACCTATGGAGGGTCAGCAAAACCCAGGAGAAGAGAGTAACACAGTTGTTACTAAAACAGAAGACTCTACAGTAGCAGCAGGTGACGTGGATGTTACTAAAACAGACGACTCTGGAGTAGTAGCAGGTGATGGTGAGGCTGATCCCAAAAACATGTAAGGTTCTACCGAGAAAGTGGTTGGTTGTTCAATAGTTCCTTAATCCTGTTTTCCTACATTTTTGGAACCAAGTTTTGCTTCATTTCAAGAATATGTTGTTTGGTTGGATGAAAATTCGAAATTCTCAAAATTTGTACTGTGGTTTAGCTACCTATGCTGGTATTTGCAAAATAATCAAAAACTGCATTTGCCTA</gDNA_template>
            <first_frame> L  I  S  F  G  A  K  N  R  F  R  N  I  F  S  S  E  R  K  N  A  A  A  A  *  I  Y  S  T  G  D  R  H  F  S  P  A  Y  R  F  Q  L  I  Y  R  Q  N  L  R  Y  T  Y  P  K  P  *  I  S  R  S  L  P  W  E  T  E  I  V  S  K  H  E  D  Y  D  K  G  R  S  M  E  E  H  G  G  *  D  S  K  G  G  G  D  E  V  W  E  E  S  V  G  S  Y  F  F  F  T  C  S  *  I  C  *  A  V  *  S  S  L  V  *  M  A  R  S  F  N  *  E   : D  *  M  D  *  R  G  G  *  K  T  T  S  P  C  K  T  H  A  Y  P  M  E  D  N  C  A  N  R  W  P  Y  T  I  T  M  P  *  T  L  *  E  A  S  R  C  S  M  Y  *  G  *  E  L  *  S  *  *  *  S  K  K  I  E  A  R  R  D  *  S  *  P  G  I  K  A  C  S  S  *  S  C  *  Y  G  *  G  R  E  R  N  A  F  *  S  T  G  *  V  G  Q  H  K  R  Q  E  G  *  K  E  S  Q  R  K  A  A  *  R  G  A  E  A  C  F  F  T  E  E  E  R  T  E  G  C  W  N  R  C  P  S  K  E  E  K  K  E  R  Y  *  L  Q  C  *  N  S  L  *  K  E  A  S  S  R  F  L  *  C  H  *  G  R  P  S  S  *  S  T  *  V  S  N  Y  H  *  G  T  R  R  *  K  E  S  R  *  G  S  S  P  K  E  A  G  Y  C  E  E  Q  N  C  R  E  T  G  C  P  Y  I  H  I  A  C  E  Q  T  *  *  S  R  S  S  E  E  E  V  E  T  E  S  S  S  T  T  D  S  R  S  *  I  G  G  H  S  K  D  R  Y  C  Q  *  S  N  W  G  R  *  T  V  R  R  E  C  C  N  A  C  S  S  C  K  L  C  P  D  T  T  T  C  Y  D  S  Y  A  N  T  S  K  N  P  F  N  *  A  R  R  H  Y  D  G  S  R  K  S  T  K  I  D  S  I  S  N  T  I  T  W  R  R  *  S  F  V  A  P  L  R  F  L  G  C  H  S  *  E  K  G  G  S  N  S  K  P  T  F  N  S  F  S  D  S  W  S  H  E  P  Y  S  *  N  W  H  D  T  F  E  R  F  L  W  D  D  T  Q  R  N  S  Y  E  G  R  A  T  H  *  *  R  N  G  Y  A  *  *  C  *  T  G  A  I  *  F  K  K  R  I  A  F  W  F  E  K  P  S  S  A  Q  E  *  V  P  D  C  H  P  T  T  S  *  R  K  *  R  T  R  R  E  D  R  R  R  H  V  *  *  D  C  Q  G  E  G  *  R  R  S  K  A  T  S  I  T  P  *  K  V  K  S  I  A  K  G  A  P  *  T  S  H  C  F  S  R  T  N  K  E  F  L  D  E  S  *  *  G  Q  E  L  L  C  S  S  Y  T  N  *  A  G  *  *  N  D  *  K  G  T  C  V  L  A  R  T  *  *  Y  Q  V  P  S  R  *  E  A  R  E  G  E  E  K  G  G  Q  A  K  N  C  C  *  T  C  Y  *  G  F  *  G  R  *  I  K  R   : G  R  W  I  D  Q  G  *  G  S  L  S  S  C  G  N  G  T  *  E  *  I  S  *  *  I  C  R  N  T  Q  S  N  F  E  *  Y  H  V  L  S  Y  P  K  C  L  W  S  L  K  C  C  W  K  H  G  K  A  C  C  F  A  E  R  V  *  E  C  E  E  K  N  G  R  *  Y  *  E  S  N  K  T  *  A  K  D  Q  S  S  Y  *  W  I  S   : D  A  S  W  K  A  L  V  T  D  R  V  N  L  Q  E  N  G  H  S  G  Y  R  A  *  M  L  P  S  I  T  K  T  R  A  A  S  S  I  P  Q  D  Q  Q  Y  V  G  R  S  S  E  A  K  G  A  *  A  Y  F  T  E  K  V  R  *  P  H  S  R  Y  A  K  D  P  A  S  H  G  *  V  *  N  T  R  S  N  A  G  R  S  C  S  K  K  S  C  S  *  V  G  E  G  R  N  G  R  K  R  *  C  T  I  C  *  *  C  G  T  F  R  Y  R  T  E  F  Q  Y  R  G  K  F  C  F  C  L  S  C  A  N  R  S  *  C  A  C  R  A  F  R  Y  Q  P  V  L  *  C  R  G  K  F  C  F  Y  *  S  *  *  C  A  C  G  A  L  R  Y  *  P  V  P  H  C  R  G  N  F  C  L  H  L  S  *  H  N  S  S  R  R  *  W  T  G  A  S  G  *  R  F  H  N  G  L  *  S  H  K  *  P  C  T  Y  G  G  S  A  K  P  R  R  R  E  *  H  S  C  Y  *  N  R  R  L  Y  S  S  S  R  *  R  G  C  Y  *  N  R  R  L  W  S  S  S  R  *  W  *  G  *  S  Q  K  H  V  R  F  Y  R  E  S  G  W  L  F  N  S  S  L  I  L  F  S  Y  I  F  G  T  K  F  C  F  I  S  R  I  C  C  L  V  G  *  K  F  E  I  L  K  I  C  T  V  V  *  L  P  M  L  V  F  A  K  *  S  K  T  A  F  A   </first_frame>
            <second_frame>  S  S  A  S  E  L  K  T  D  S  E  I  S  S  R  R  S  G  K  T  P  P  R  P  E  S  T  L  P  E  T  V  I  S  R  R  R  I  D  F  S  S  F  T  G  K  I  *  G  I  L  I  Q  N  P  R  F  L  G  V  S  L  G  R  L  K  *  L  A  N  M  R  I  M  I  K  G  G  V  W  K  N  T  E  D  E  I  L  K  A  A  V  M  K  Y  G  K  N  Q  W  A  R  I  S  S  L  L  V  R  K  S  A  K  Q  C  K  A  R  W  Y  E  W  L  D  P  S  I  K  K  :  T  E  W  T  R  E  E  D  E  K  L  L  H  L  A  K  L  M  P  T  Q  W  R  T  I  A  P  I  V  G  R  T  P  S  Q  C  L  E  R  Y  E  K  L  L  D  A  A  C  T  K  D  E  N  Y  D  P  N  D  D  P  R  K  L  K  P  G  E  I  D  P  N  P  E  S  K  P  A  R  P  D  P  V  D  M  D  E  D  E  K  E  M  L  S  E  A  R  A  R  L  A  N  T  R  G  K  K  A  K  R  K  A  R  E  K  Q  L  E  E  A  R  R  L  A  S  L  Q  K  R  R  E  L  K  A  A  G  I  D  V  R  Q  R  K  R  K  R  R  G  I  D  Y  N  A  E  I  P  F  E  K  K  P  P  P  G  F  Y  D  V  T  E  E  D  R  P  V  D  Q  P  K  F  P  T  T  I  E  E  L  E  G  E  R  R  V  D  K  E  A  R  L  R  K  Q  D  I  A  R  N  K  I  A  E  R  Q  D  A  P  T  S  I  L  H  A  N  K  L  N  D  P  E  A  V  R  K  R  S  K  L  N  L  P  A  P  Q  I  P  D  H  E  L  E  A  I  A  K  I  G  I  A  S  D  L  I  G  G  D  E  L  S  E  G  N  A  A  T  R  A  L  L  A  N  Y  A  Q  T  P  Q  H  A  M  T  P  M  R  T  P  Q  R  T  P  S  T  K  Q  D  A  I  M  M  E  A  E  N  Q  R  R  L  T  Q  S  Q  T  P  L  L  G  G  D  N  P  L  L  H  P  S  D  F  S  G  V  T  P  K  K  R  E  V  Q  T  P  N  P  L  L  T  P  S  A  T  P  G  A  T  S  L  T  P  R  I  G  M  T  P  S  R  D  S  Y  G  M  T  P  K  G  T  P  M  R  D  E  L  R  I  N  E  E  M  D  M  H  S  N  A  K  L  G  Q  F  N  S  K  K  E  L  L  S  G  L  K  S  L  P  Q  P  K  N  E  Y  Q  I  V  I  Q  Q  P  P  E  E  N  E  E  P  E  E  K  I  E  E  D  M  S  D  R  I  A  R  E  K  A  E  E  E  A  K  R  Q  A  L  L  R  K  R  S  K  V  L  Q  R  E  L  P  R  P  P  I  A  S  L  E  L  I  K  S  S  L  M  R  A  D  E  D  K  S  S  F  V  P  P  T  L  I  E  Q  A  D  E  M  I  R  K  E  L  V  S  L  L  E  H  D  N  T  K  Y  P  L  D  E  K  P  E  K  E  K  K  K  G  V  K  R  K  I  V  A  E  P  A  I  E  D  F  E  E  D  E  L  K  E  :  A  D  G  L  I  K  D  E  A  H  F  L  R  V  A  M  G  H  E  S  E  S  L  D  E  F  V  E  I  H  K  A  T  L  N  D  I  M  Y  F  P  T  R  N  A  Y  G  L  S  S  V  A  G  N  M  E  K  L  A  A  L  Q  N  E  F  E  N  V  K  K  K  M  D  D  D  T  K  K  A  T  K  L  E  Q  K  I  K  V  L  T  N  G  Y  Q  :  M  R  A  G  K  L  W  S  Q  I  E  S  T  F  K  K  M  D  T  A  G  T  E  L  E  C  F  R  A  L  Q  K  Q  E  Q  L  A  A  S  H  R  I  N  N  M  W  E  E  V  Q  K  Q  K  E  L  E  R  T  L  Q  K  R  Y  G  D  L  I  A  D  T  Q  K  I  Q  H  L  M  D  E  Y  R  I  Q  D  Q  M  Q  E  E  V  A  A  K  N  R  A  L  E  L  A  K  A  E  M  A  E  K  D  S  V  P  S  A  D  D  V  E  P  S  G  T  G  Q  N  S  N  T  E  E  N  S  A  S  A  S  H  V  P  I  E  A  D  V  H  V  E  P  S  G  T  N  Q  C  S  N  A  E  E  N  S  A  S  I  E  A  D  N  V  H  V  E  P  S  G  T  S  Q  C  P  I  A  E  E  T  S  A  S  I  S  H  D  T  T  P  R  D  V  D  G  Q  V  Q  V  A  D  V  S  T  M  D  S  E  A  I  S  D  H  V  P  M  E  G  Q  Q  N  P  G  E  E  S  N  T  V  V  T  K  T  E  D  S  T  V  A  A  G  D  V  D  V  T  K  T  D  D  S  G  V  V  A  G  D  G  E  A  D  P  K  N  M  *  G  S  T  E  K  V  V  G  C  S  I  V  P  *  S  C  F  P  T  F  L  E  P  S  F  A  S  F  Q  E  Y  V  V  W  L  D  E  N  S  K  F  S  K  F  V  L  W  F  S  Y  L  C  W  Y  L  Q  N  N  Q  K  L  H  L  P  </second_frame>
            <third_frame>   H  Q  L  R  S  *  K  P  I  P  K  Y  L  L  V  G  A  E  K  R  R  R  G  L  N  L  L  Y  R  R  P  S  F  L  A  G  V  *  I  S  A  H  L  Q  A  K  S  E  V  Y  L  S  K  T  L  D  F  S  E  S  P  L  G  D  *  N  S  *  Q  T  *  G  L  *  *  R  E  E  Y  G  R  T  R  R  M  R  F  *  R  R  R  *  *  S  M  G  R  I  S  G  L  V  F  L  L  Y  L  F  V  N  L  L  S  S  V  K  L  A  G  M  N  G  S  I  L  Q  L  R  R :   L  N  G  L  E  R  R  M  K  N  Y  F  T  L  Q  N  S  C  L  P  N  G  G  Q  L  R  Q  S  L  A  V  H  H  H  N  A  L  N  V  M  R  S  F  S  M  Q  H  V  L  R  M  R  T  M  I  L  M  M  I  Q  E  N  *  S  P  E  R  L  I  L  T  R  N  Q  S  L  L  V  L  I  L  L  I  W  M  R  T  R  K  K  C  F  L  K  H  G  L  G  W  P  T  Q  E  A  R  R  L  K  G  K  P  E  K  S  S  L  K  R  R  G  G  L  L  L  Y  R  R  G  E  N  *  R  L  L  E  *  M  S  V  K  G  R  E  K  G  E  V  L  I  T  M  L  K  F  P  L  K  R  S  L  L  Q  V  S  M  M  S  L  R  K  T  V  Q  L  I  N  L  S  F  Q  L  P  L  R  N  *  K  V  K  G  E  S  I  R  K  L  A  *  G  S  R  I  L  R  G  T  K  L  Q  R  D  R  M  P  L  H  P  Y  C  M  R  T  N  L  M  I  Q  K  Q  *  G  R  G  R  N  *  I  F  Q  H  H  R  F  Q  I  M  N  W  R  P  *  Q  R  *  V  L  P  V  I  *  L  G  E  M  N  C  P  K  G  M  L  Q  R  V  L  F  L  Q  I  M  P  R  H  H  N  M  L  *  L  L  C  E  H  L  K  E  P  L  Q  L  S  K  T  P  L  *  W  K  Q  K  I  N  E  D  *  L  N  L  K  H  H  Y  L  E  E  I  I  L  C  C  T  P  Q  I  S  R  V  S  L  L  R  K  G  R  F  K  L  Q  T  H  F  *  L  L  Q  R  L  L  E  P  R  A  L  L  L  E  L  A  *  H  L  R  E  I  L  M  G  *  H  P  K  E  L  L  *  G  T  S  Y  A  L  M  K  K  W  I  C  I  V  M  L  N  W  G  N  L  I  Q  K  K  N  C  F  L  V  *  K  A  F  L  S  P  R  M  S  T  R  L  S  S  N  N  L  L  K  K  M  K  N  Q  K  R  R  S  K  K  T  C  L  I  G  L  P  G  R  R  L  K  K  K  Q  S  D  K  H  Y  S  V  K  G  Q  K  Y  C  K  G  S  S  L  D  L  P  L  L  L  *  N  *  *  R  V  P  *  *  E  L  M  R  T  R  A  P  L  F  L  L  H  *  L  S  R  L  M  K  *  L  E  R  N  L  C  P  C  *  N  M  I  I  P  S  T  L  *  M  R  S  Q  R  R  R  R  K  R  G  S  S  E  K  L  L  L  N  L  L  L  R  I  L  R  K  M  N  *  K  R :   P  M  D  *  S  R  M  R  L  T  F  F  V  W  Q  W  D  M  R  V  N  L  L  M  N  L  S  K  Y  T  K  Q  L  *  M  I  S  C  T  F  L  P  E  M  L  M  V  S  Q  V  L  L  E  T  W  K  S  L  L  L  C  R  T  S  L  R  M  *  R  K  K  W  T  M  I  L  R  K  Q  Q  N  L  S  K  R  S  K  F  L  L  M  D  I  R :   C  E  L  E  S  F  G  H  R  *  S  Q  P  S  R  K  W  T  Q  R  V  Q  S  L  N  A  S  E  H  Y  K  N  K  S  S  *  Q  H  P  T  G  S  T  I  C  G  K  K  F  R  S  K  R  S  L  S  V  L  Y  R  K  G  T  V  T  S  *  Q  I  R  K  R  S  S  I  S  W  M  S  I  E  Y  K  I  K  C  R  K  K  L  Q  Q  K  I  V  L  L  S  W  R  R  Q  K  W  Q  K  K  I  V  Y  H  L  L  M  M  W  N  L  Q  V  P  D  R  I  P  I  Q  R  K  I  L  L  L  P  L  M  C  Q  *  K  L  M  C  M  *  S  L  Q  V  P  T  S  A  L  M  Q  R  K  I  L  L  L  L  K  L  I  M  C  M  W  S  P  Q  V  L  A  S  A  P  L  Q  R  K  L  L  P  P  S  L  M  T  Q  L  L  E  T  L  M  D  R  C  K  W  L  T  F  P  Q  W  T  L  K  P  *  V  T  M  Y  L  W  R  V  S  K  T  Q  E  K  R  V  T  Q  L  L  L  K  Q  K  T  L  Q  *  Q  Q  V  T  W  M  L  L  K  Q  T  T  L  E  *  *  Q  V  M  V  R  L  I  P  K  T  C  K  V  L  P  R  K  W  L  V  V  Q  *  F  L  N  P  V  F  L  H  F  W  N  Q  V  L  L  H  F  K  N  M  L  F  G  W  M  K  I  R  N  S  Q  N  L  Y  C  G  L  A  T  Y  A  G  I  C  K  I  I  K  N  C  I  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44954" stop="44769"/>
                    <exon start="43821" stop="42127"/>
                    <exon start="41378" stop="41097"/>
                    <exon start="40842" stop="40033"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2970</number_coding_nucleotides>
                  <number_encoded_amino_acids>990</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LANMRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACTKDENYDPNDDPRKLKPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDVRQRKRKRRGIDYNAEIPFEKKPPPGFYDVTEEDRPVDQPKFPTTIEELEGERRVDKEARLRKQDIARNKIAERQDAPTSILHANKLNDPEAVRKRSKLNLPAPQIPDHELEAIAKIGIASDLIGGDELSEGNAATRALLANYAQTPQHAMTPMRTPQRTPSTKQDAIMMEAENQRRLTQSQTPLLGGDNPLLHPSDFSGVTPKKREVQTPNPLLTPSATPGATSLTPRIGMTPSRDSYGMTPKGTPMRDELRINEEMDMHSNAKLGQFNSKKELLSGLKSLPQPKNEYQIVIQQPPEENEEPEEKIEEDMSDRIAREKAEEEAKRQALLRKRSKVLQRELPRPPIASLELIKSSLMRADEDKSSFVPPTLIEQADEMIRKELVSLLEHDNTKYPLDEKPEKEKKKGVKRKIVAEPAIEDFEEDELKEADGLIKDEAHFLRVAMGHESESLDEFVEIHKATLNDIMYFPTRNAYGLSSVAGNMEKLAALQNEFENVKKKMDDDTKKATKLEQKIKVLTNGYQMRAGKLWSQIESTFKKMDTAGTELECFRALQKQEQLAASHRINNMWEEVQKQKELERTLQKRYGDLIADTQKIQHLMDEYRIQDQMQEEVAAKNRALELAKAEMAEKDSVPSADDVEPSGTGQNSNTEENSASASHVPIEADVHVEPSGTNQCSNAEENSASIEADNVHVEPSGTSQCPIAEETSASISHDTTPRDVDGQVQVADVSTMDSEAISDHVPMEGQQNPGEESNTVVTKTEDSTVAAGDVDVTKTDDSGVVAGDGEADPKNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="51036" PGL_stop="46451"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51036" e_stop="50867"/>
            <exon e_start="50280" e_stop="50169"/>
            <exon e_start="50062" e_stop="49958"/>
            <exon e_start="49846" e_stop="49769"/>
            <exon e_start="49406" e_stop="49351"/>
            <exon e_start="48970" e_stop="48913"/>
            <exon e_start="47831" e_stop="47709"/>
            <exon e_start="47566" e_stop="47471"/>
            <exon e_start="47303" e_stop="47232"/>
            <exon e_start="46775" e_stop="46451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.737" acc_prob="0.601" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.897" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.826" acc_prob="0.977" e_score="0.990"/>
          <exon-intron don_prob="0.800" acc_prob="0.968" e_score="0.986"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51036" e_stop="50867" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.737" acc_prob="0.601">
            <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50280" e_stop="50169" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50062" e_stop="49958" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.949">
            <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49846" e_stop="49769" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.897" acc_prob="0.991">
            <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49406" e_stop="49351" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="48970" e_stop="48913" e_length="58"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.985">
            <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47831" e_stop="47709" e_length="123"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47708" i_stop="47567" i_length="142"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="47566" e_stop="47471" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.826" acc_prob="0.977">
            <gDNA_intron_boundary i_start="47470" i_stop="47304" i_length="167"/>
          </intron>
          <exon e_serial="9" e_score="0.986">
            <gDNA_exon_boundary e_start="47303" e_stop="47232" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.800" acc_prob="0.968">
            <gDNA_intron_boundary i_start="47231" i_stop="46776" i_length="456"/>
          </intron>
          <exon e_serial="10" e_score="0.988">
            <gDNA_exon_boundary e_start="46775" e_stop="46451" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51036" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49769"/>
              <exon start="49406" stop="49351"/>
              <exon start="48970" stop="48913"/>
              <exon start="47831" stop="47709"/>
              <exon start="47566" stop="47471"/>
              <exon start="47303" stop="47232"/>
              <exon start="46775" stop="46451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAG : ACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAG : GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAG : TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAG : GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACG : GTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTT : ATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTACA : GAGGAAGGCGAAGATGAAGGACGGATGATGAGGATGGGAAAAAGGCTGCTTCGTTCTCTTGCATTAGTTTTTGGTTGCATAGCTATTGCATCCTTG : GGATATACTGGTCTCCTCAATCTTATCGAGTATGCTGGTGGTTTCATACCTGTCTTTCTGTACAATAATCAG : GAATTGCTTGTAACTGGATTCACAGCCATCGTGCTTTCCATCATCGCATCTTATTACAGATAGTCTACCTTCTACACTTGTTGAAGAAGAGATGCAGTTGCCTTGTGTTAGCTGTCAAATTTTGTAATTCTATTTGTTCCAGAAATTTGCCTTGTTTTGTCTATAGGATTTGATTGAGCAGCACTTGTAAGGATGCACCAAGTTCTGAGGATTCTAGGATTAAACAAGACCACAATCTTTTCAAAATTGATGGATGTTAATGTGGAGATATAAATGATAATGAGGAGGAAAGGTTAGGGCGGATCAATCCTTCATTTGAAAAACA</gDNA_template>
            <first_frame> E  N  P  N  P  F  S  R  E  E  R  R  S  S  S  K  M  V  F  T  I  S  S  N  P  V  Q  F  T  H  T  T  S  L  N  A  R  P  N  C  Y  L  K  A  S  V  P  V  S  N  L  S  F  S  F  F  R :   H  E  Y  I  R  F  S  V  K  S  R  L  N  K  R  M  V  C  A  A  A  S  A  A  G  S  S  S  S  S  D  D  S  N  P  Y  E  :  V  L  G  V  N  P  I  E  G  F  D  M  V  K  A  A  Y  A  R  R  R  K  D  A  E  R  R  G  D  E  A  T  L  A  Q  :  L  E  K  A  Y  D  K  I  M  M  S  Q  L  T  K  R  K  Q  G  V  T  F  G  S  F  K  :  V  S  K  E  V  R  Y  A  D  K  Q  P  I  L  P  W  G  P  R :   F  T  K  S  D  D  K  D  I  K  I  N  L  A  I  S  A  V  F  :  I  A  W  V  F  I  N  R  N  A  E  W  K  P  L  Q  F  L  A  F  A  F  V  Y  R  I  F  E  K  L  K  A  F  E  P  P  T  P  T  F  T  :  E  E  G  E  D  E  G  R  M  M  R  M  G  K  R  L  L  R  S  L  A  L  V  F  G  C  I  A  I  A  S  L  :  G  Y  T  G  L  L  N  L  I  E  Y  A  G  G  F  I  P  V  F  L  Y  N  N  Q  :  E  L  L  V  T  G  F  T  A  I  V  L  S  I  I  A  S  Y  Y  R  *  S  T  F  Y  T  C  *  R  R  D  A  V  A  L  C  *  L  S  N  F  V  I  L  F  V  P  E  I  C  L  V  L  S  I  G  F  D  *  A  A  L  V  R  M  H  Q  V  L  R  I  L  G  L  N  K  T  T  I  F  S  K  L  M  D  V  N  V  E  I  *  M  I  M  R  R  K  G  *  G  G  S  I  L  H  L  K  N  </first_frame>
            <second_frame>  K  T  L  I  P  L  A  E  K  K  E  G  V  A  Q  K  W  C  L  Q  Y  H  Q  T  L  F  S  L  H  I  L  L  L  *  M  L  D  P  I  V  I  S  K  L  L  F  Q  F  Q  I  Y  R  F  L  S  S   : D  M  N  T  S  G  F  L  *  N  L  A  *  I  K  G  W  S  V  L  L  L  Q  L  L  E  V  L  V  L  A  M  T  Q  I  L  M  R :   F  W  V  *  T  L  L  R  D  L  T  W  L  R  Q  H  M  Q  G  E  G  K  M  L  S  G  G  V  M  K  Q  R  L  L  S :   W  R  R  L  M  T  K  S  *  C  H  S  *  Q  K  G  S  R  V  S  L  L  A  R  L  R :   Y  L  K  R  Y  D  M  L  I  S  S  L  F  C  H  G  V  H   : G  S  P  N  L  M  T  K  I  S  K  S  T  W  Q  F  Q  L  Y  L :   *  L  G  F  L  *  I  V  M  L  S  G  S  L  Y  S  F  W  P  S  P  L  Y  I  G  Y  L  R  N  *  K  H  L  S  L  Q  L  P  R  L  Q :   R  K  A  K  M  K  D  G  *  *  G  W  E  K  G  C  F  V  L  L  H  *  F  L  V  A  *  L  L  H  P  W :   D  I  L  V  S  S  I  L  S  S  M  L  V  V  S  Y  L  S  F  C  T  I  I  R :   N  C  L  *  L  D  S  Q  P  S  C  F  P  S  S  H  L  I  T  D  S  L  P  S  T  L  V  E  E  E  M  Q  L  P  C  V  S  C  Q  I  L  *  F  Y  L  F  Q  K  F  A  L  F  C  L  *  D  L  I  E  Q  H  L  *  G  C  T  K  F  *  G  F  *  D  *  T  R  P  Q  S  F  Q  N  *  W  M  L  M  W  R  Y  K  *  *  *  G  G  K  V  R  A  D  Q  S  F  I  *  K  T </second_frame>
            <third_frame>   K  P  *  S  L  *  Q  R  R  K  K  E  *  L  K  N  G  V  Y  N  I  I  K  P  C  S  V  Y  T  Y  Y  F  F  K  C  S  T  Q  L  L  S  Q  S  F  C  S  S  F  K  F  I  V  F  F  L  Q  :  T  *  I  H  Q  V  F  C  K  I  S  P  E  *  K  D  G  L  C  C  C  F  S  C  W  K  F  *  F  *  R  *  L  K  S  L  *   : G  S  G  C  K  P  Y  *  G  I  *  H  G  *  G  S  I  C  K  E  K  E  R  C  *  A  E  G  *  *  S  N  A  C  S   : V  G  E  G  L  *  Q  N  H  D  V  T  V  N  K  K  E  A  G  C  H  F  W  L  V  *   : G  I  *  R  G  T  I  C  *  *  A  A  Y  F  A  M  G  S  T  :  V  H  Q  I  *  *  Q  R  Y  Q  N  Q  L  G  N  F  S  C  I   : Y  S  L  G  F  Y  K  S  *  C  *  V  E  A  F  T  V  F  G  L  R  L  C  I  *  D  I  *  E  I  K  S  I  *  A  S  N  S  H  V  Y   : R  G  R  R  R  *  R  T  D  D  E  D  G  K  K  A  A  S  F  S  C  I  S  F  W  L  H  S  Y  C  I  L   : G  I  Y  W  S  P  Q  S  Y  R  V  C  W  W  F  H  T  C  L  S  V  Q  *  S   : G  I  A  C  N  W  I  H  S  H  R  A  F  H  H  R  I  L  L  Q  I  V  Y  L  L  H  L  L  K  K  R  C  S  C  L  V  L  A  V  K  F  C  N  S  I  C  S  R  N  L  P  C  F  V  Y  R  I  *  L  S  S  T  C  K  D  A  P  S  S  E  D  S  R  I  K  Q  D  H  N  L  F  K  I  D  G  C  *  C  G  D  I  N  D  N  E  E  E  R  L  G  R  I  N  P  S  F  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51036" stop="50867"/>
                    <exon start="50280" stop="50169"/>
                    <exon start="50062" stop="49958"/>
                    <exon start="49846" stop="49769"/>
                    <exon start="49406" stop="49351"/>
                    <exon start="48970" stop="48913"/>
                    <exon start="47831" stop="47709"/>
                    <exon start="47566" stop="47471"/>
                    <exon start="47303" stop="47232"/>
                    <exon start="46775" stop="46713"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>930</number_coding_nucleotides>
                  <number_encoded_amino_acids>310</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENPNPFSREERRSSSKMVFTISSNPVQFTHTTSLNARPNCYLKASVPVSNLSFSFFRHEYIRFSVKSRLNKRMVCAAASAAGSSSSSDDSNPYEVLGVNPIEGFDMVKAAYARRRKDAERRGDEATLAQLEKAYDKIMMSQLTKRKQGVTFGSFKVSKEVRYADKQPILPWGPRFTKSDDKDIKINLAISAVFIAWVFINRNAEWKPLQFLAFAFVYRIFEKLKAFEPPTPTFTEEGEDEGRMMRMGKRLLRSLALVFGCIAIASLGYTGLLNLIEYAGGFIPVFLYNNQELLVTGFTAIVLSIIASYYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="59827" PGL_stop="66601"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59827" e_stop="60219"/>
            <exon e_start="61631" e_stop="61751"/>
            <exon e_start="62405" e_stop="62590"/>
            <exon e_start="62817" e_stop="62980"/>
            <exon e_start="63767" e_stop="63874"/>
            <exon e_start="64125" e_stop="64262"/>
            <exon e_start="64341" e_stop="64445"/>
            <exon e_start="64680" e_stop="64965"/>
            <exon e_start="65057" e_stop="65180"/>
            <exon e_start="66139" e_stop="66601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.945" acc_prob="0.971" e_score="0.967"/>
          <exon-intron don_prob="0.937" acc_prob="0.997" e_score="0.989"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.855" acc_prob="0.792" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.791" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="59827" e_stop="60219" e_length="393"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60220" i_stop="61630" i_length="1411"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="61631" e_stop="61751" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="0.971">
            <gDNA_intron_boundary i_start="61752" i_stop="62404" i_length="653"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="62405" e_stop="62590" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.937" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62591" i_stop="62816" i_length="226"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62817" e_stop="62980" e_length="164"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62981" i_stop="63766" i_length="786"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63767" e_stop="63874" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.937" acc_prob="0.995">
            <gDNA_intron_boundary i_start="63875" i_stop="64124" i_length="250"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64125" e_stop="64262" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.855" acc_prob="0.792">
            <gDNA_intron_boundary i_start="64263" i_stop="64340" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="64341" e_stop="64445" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="64446" i_stop="64679" i_length="234"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="64680" e_stop="64965" e_length="286"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64966" i_stop="65056" i_length="91"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="65057" e_stop="65180" e_length="124"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.791">
            <gDNA_intron_boundary i_start="65181" i_stop="66138" i_length="958"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="66139" e_stop="66601" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59827" stop="60219"/>
              <exon start="61631" stop="61751"/>
              <exon start="62405" stop="62590"/>
              <exon start="62817" stop="62980"/>
              <exon start="63767" stop="63874"/>
              <exon start="64125" stop="64262"/>
              <exon start="64341" stop="64445"/>
              <exon start="64680" stop="64965"/>
              <exon start="65057" stop="65180"/>
              <exon start="66139" stop="66601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGACAAACAAGACTATGAACATTGCTATGGAGCAATAAAAATTCAAGAATCCATATGAACTTTGAAGAATTCAAAAACCCCAGTTGGAAATAGATCCCCTTTTTCAATTTCAATTTGAAAAAGAGAAAAAAAAAGTGATCTTTTTTTTTTCTTCACTGTAGTGTGATGAGAATCAGTTTTTTACGATTTGGGGTTTTGTTCTTGTTGTGTAATTGTTTGATTGGAGCTTATTGTTCCAAATCTGATGAAGCATATGTGACCCTTTTGTATGGCGATGAGTTCTTGCTTGGGGTTCGAGTACTTGGCAAGTCGATTAGGGATACTGGATCAACCAAAGATATGGTAGTTTTGGTCTCTGATGGGGTTTCTCAATATGCCAAACATCTACTCCAG : GCAGATGGTTGGATTGTGGAGAAAATTAGCTTACTGGCAAACCCAAATCAAGTGAGACCGAAGAGGTTTTGGGGCGTCTACACAAAGCTAAAAATATTTAACATGACCACTTACAAGAAAG : TGGTGTATCTTGACGCTGATACTATTGTTGTTAAAAGCATTGAAGATCTGTTTAAATGTGGGAAGTTCTGTGCAAATTTAAAACATTCTGAGAGACTGAATTCTGGAGTCATGGTGGTTGAGCCATCAGAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTCTTACACTGGAG : GTGATCAAGGTTTTCTCAACTCCTACTATGTTGGGTTTGCTAATGCTCAGGTTTATGAGCCAAATTTGCCGTCAGATGTCTTAAATTCCAGAAAGGTTCCAGAAATGGAGAGACTTTCTACTCTTTACAATGCAGATGTTGGCCTCTACATGCTTGCTAACAAG : TGGATGGTGGATGAAAAAGAACTTCGAGTTATTCATTACACACTTGGCCCGCTTAAACCGTGGGATTGGTGGACGTCTTGGCTGTTAAAACCTGTTGATGTCTGGCAG : AATGTCAGGGTACAACTTCAAGAATCTCTACCTGGAACTAGAGGCGGCAAAAATTCCAGAGATGAACTTCTTGTCAAATTTCTTTATTTGCTTCCATTGCTTCTGATAGCATTTTGTTACTATCGGTCGTTCTTACAG : ACACAATCACTATGGCACCATATCAGACAAATGTACTACAAGGTCAGAGGAGGTGTCCTAGCTTATGCCTCTGTTCCTCCATCTGCCATCAGCTCCAACCAGCAG : TTCCCAAATGGTATGCAGTTGAAGATGCCTACTTATCTGGGTGCGGTATCTGTCTGTGTCTGTTTTGCTGCTGCTCTTGTGTCCCTTGGTCTTCCACTTTTAATCATTCCGCGCCAAGTAATGCCATGGACTGGTCTCCTCCTTATGTACGAATGGACATTTACACTTTTCTTCCTCTTGTTCGGAAGTTATCTGCACTTAGTTTATCAGTGGGGAAGGGTTGCGGCAAATCAACCTGGTCAATTTCCGGCTCATCCTGTATCTTTGGATTATGAACCTGGAAAAG : GTCATCAGCGGCAACAATCATGTTGTGACAATGAAGCATGGTACTATGGGTTAGGGATGGCATTTCTTGCCATTGCAGCCCCAGCATTGCCTGGTGTTTTTGGAGTCACTTCTTTGTTTTTGAG : GTTAGGTTTGATGGTCGTAGGCGGCCTTATTTTGACGTCCTTCATGACATATGCTTCAGAGCATCTATCGATTAGATCATTCGCGAGGGGCTTTGAAGAAAGGAACACACCAAGGAGTAGGAGTGTGTGTTTCTTATGTTGATCATGTCAATATTTTTGGTTTTAGCTTAACTACAAGCAATCATCTTCTTGATCTCATTTGTAACTTGTTTTGACATATTCTTCCTAGTGAAAATATGTAGAATATGTTGGGAAATCATTTATTTACTAATGTGATTTTTATTTTTTTTGTTAAGGTTAAAAAGGTGTATGTTTTCTGTATATGCTTCTTAAATTTTTTGATTGATATGGATGAGGATTATTGATCAATTCTCAAGTGTTTGGAACACTTCCATACTGGTAGTCAATAGTATATACTCATTTTTGTAGCTTCTTTCTCCTTTGATTTATGTAAATATTTATG</gDNA_template>
            <first_frame> R  Q  T  R  L  *  T  L  L  W  S  N  K  N  S  R  I  H  M  N  F  E  E  F  K  N  P  S  W  K  *  I  P  F  F  N  F  N  L  K  K  R  K  K  K  *  S  F  F  F  L  H  C  S  V  M  R  I  S  F  L  R  F  G  V  L  F  L  L  C  N  C  L  I  G  A  Y  C  S  K  S  D  E  A  Y  V  T  L  L  Y  G  D  E  F  L  L  G  V  R  V  L  G  K  S  I  R  D  T  G  S  T  K  D  M  V  V  L  V  S  D  G  V  S  Q  Y  A  K  H  L  L  Q  :  A  D  G  W  I  V  E  K  I  S  L  L  A  N  P  N  Q  V  R  P  K  R  F  W  G  V  Y  T  K  L  K  I  F  N  M  T  T  Y  K  K   : V  V  Y  L  D  A  D  T  I  V  V  K  S  I  E  D  L  F  K  C  G  K  F  C  A  N  L  K  H  S  E  R  L  N  S  G  V  M  V  V  E  P  S  E  K  V  F  N  D  M  M  S  K  V  T  T  L  P  S  Y  T  G   : G  D  Q  G  F  L  N  S  Y  Y  V  G  F  A  N  A  Q  V  Y  E  P  N  L  P  S  D  V  L  N  S  R  K  V  P  E  M  E  R  L  S  T  L  Y  N  A  D  V  G  L  Y  M  L  A  N  K  :  W  M  V  D  E  K  E  L  R  V  I  H  Y  T  L  G  P  L  K  P  W  D  W  W  T  S  W  L  L  K  P  V  D  V  W  Q  :  N  V  R  V  Q  L  Q  E  S  L  P  G  T  R  G  G  K  N  S  R  D  E  L  L  V  K  F  L  Y  L  L  P  L  L  L  I  A  F  C  Y  Y  R  S  F  L  Q  :  T  Q  S  L  W  H  H  I  R  Q  M  Y  Y  K  V  R  G  G  V  L  A  Y  A  S  V  P  P  S  A  I  S  S  N  Q  Q  :  F  P  N  G  M  Q  L  K  M  P  T  Y  L  G  A  V  S  V  C  V  C  F  A  A  A  L  V  S  L  G  L  P  L  L  I  I  P  R  Q  V  M  P  W  T  G  L  L  L  M  Y  E  W  T  F  T  L  F  F  L  L  F  G  S  Y  L  H  L  V  Y  Q  W  G  R  V  A  A  N  Q  P  G  Q  F  P  A  H  P  V  S  L  D  Y  E  P  G  K   : G  H  Q  R  Q  Q  S  C  C  D  N  E  A  W  Y  Y  G  L  G  M  A  F  L  A  I  A  A  P  A  L  P  G  V  F  G  V  T  S  L  F  L  R :   L  G  L  M  V  V  G  G  L  I  L  T  S  F  M  T  Y  A  S  E  H  L  S  I  R  S  F  A  R  G  F  E  E  R  N  T  P  R  S  R  S  V  C  F  L  C  *  S  C  Q  Y  F  W  F  *  L  N  Y  K  Q  S  S  S  *  S  H  L  *  L  V  L  T  Y  S  S  *  *  K  Y  V  E  Y  V  G  K  S  F  I  Y  *  C  D  F  Y  F  F  C  *  G  *  K  G  V  C  F  L  Y  M  L  L  K  F  F  D  *  Y  G  *  G  L  L  I  N  S  Q  V  F  G  T  L  P  Y  W  *  S  I  V  Y  T  H  F  C  S  F  F  L  L  *  F  M  *  I  F  M </first_frame>
            <second_frame>  D  K  Q  D  Y  E  H  C  Y  G  A  I  K  I  Q  E  S  I  *  T  L  K  N  S  K  T  P  V  G  N  R  S  P  F  S  I  S  I  *  K  R  E  K  K  S  D  L  F  F  F  F  T  V  V  *  *  E  S  V  F  Y  D  L  G  F  C  S  C  C  V  I  V  *  L  E  L  I  V  P  N  L  M  K  H  M  *  P  F  C  M  A  M  S  S  C  L  G  F  E  Y  L  A  S  R  L  G  I  L  D  Q  P  K  I  W  *  F  W  S  L  M  G  F  L  N  M  P  N  I  Y  S  R :   Q  M  V  G  L  W  R  K  L  A  Y  W  Q  T  Q  I  K  *  D  R  R  G  F  G  A  S  T  Q  S  *  K  Y  L  T  *  P  L  T  R  K  :  W  C  I  L  T  L  I  L  L  L  L  K  A  L  K  I  C  L  N  V  G  S  S  V  Q  I  *  N  I  L  R  D  *  I  L  E  S  W  W  L  S  H  Q  K  K  F  L  M  I  *  *  A  R  *  P  L  C  L  L  T  L  E  :  V  I  K  V  F  S  T  P  T  M  L  G  L  L  M  L  R  F  M  S  Q  I  C  R  Q  M  S  *  I  P  E  R  F  Q  K  W  R  D  F  L  L  F  T  M  Q  M  L  A  S  T  C  L  L  T  S :   G  W  W  M  K  K  N  F  E  L  F  I  T  H  L  A  R  L  N  R  G  I  G  G  R  L  G  C  *  N  L  L  M  S  G  R :   M  S  G  Y  N  F  K  N  L  Y  L  E  L  E  A  A  K  I  P  E  M  N  F  L  S  N  F  F  I  C  F  H  C  F  *  *  H  F  V  T  I  G  R  S  Y  R :   H  N  H  Y  G  T  I  S  D  K  C  T  T  R  S  E  E  V  S  *  L  M  P  L  F  L  H  L  P  S  A  P  T  S  S :   S  Q  M  V  C  S  *  R  C  L  L  I  W  V  R  Y  L  S  V  S  V  L  L  L  L  L  C  P  L  V  F  H  F  *  S  F  R  A  K  *  C  H  G  L  V  S  S  L  C  T  N  G  H  L  H  F  S  S  S  C  S  E  V  I  C  T  *  F  I  S  G  E  G  L  R  Q  I  N  L  V  N  F  R  L  I  L  Y  L  W  I  M  N  L  E  K  :  V  I  S  G  N  N  H  V  V  T  M  K  H  G  T  M  G  *  G  W  H  F  L  P  L  Q  P  Q  H  C  L  V  F  L  E  S  L  L  C  F  *   : G  *  V  *  W  S  *  A  A  L  F  *  R  P  S  *  H  M  L  Q  S  I  Y  R  L  D  H  S  R  G  A  L  K  K  G  T  H  Q  G  V  G  V  C  V  S  Y  V  D  H  V  N  I  F  G  F  S  L  T  T  S  N  H  L  L  D  L  I  C  N  L  F  *  H  I  L  P  S  E  N  M  *  N  M  L  G  N  H  L  F  T  N  V  I  F  I  F  F  V  K  V  K  K  V  Y  V  F  C  I  C  F  L  N  F  L  I  D  M  D  E  D  Y  *  S  I  L  K  C  L  E  H  F  H  T  G  S  Q  *  Y  I  L  I  F  V  A  S  F  S  F  D  L  C  K  Y  L   </second_frame>
            <third_frame>   T  N  K  T  M  N  I  A  M  E  Q  *  K  F  K  N  P  Y  E  L  *  R  I  Q  K  P  Q  L  E  I  D  P  L  F  Q  F  Q  F  E  K  E  K  K  K  V  I  F  F  F  S  S  L  *  C  D  E  N  Q  F  F  T  I  W  G  F  V  L  V  V  *  L  F  D  W  S  L  L  F  Q  I  *  *  S  I  C  D  P  F  V  W  R  *  V  L  A  W  G  S  S  T  W  Q  V  D  *  G  Y  W  I  N  Q  R  Y  G  S  F  G  L  *  W  G  F  S  I  C  Q  T  S  T  P   : G  R  W  L  D  C  G  E  N  *  L  T  G  K  P  K  S  S  E  T  E  E  V  L  G  R  L  H  K  A  K  N  I  *  H  D  H  L  Q  E  S :   G  V  S  *  R  *  Y  Y  C  C  *  K  H  *  R  S  V  *  M  W  E  V  L  C  K  F  K  T  F  *  E  T  E  F  W  S  H  G  G  *  A  I  R  K  S  F  *  *  Y  D  E  Q  G  D  H  F  A  F  L  H  W  R :   *  S  R  F  S  Q  L  L  L  C  W  V  C  *  C  S  G  L  *  A  K  F  A  V  R  C  L  K  F  Q  K  G  S  R  N  G  E  T  F  Y  S  L  Q  C  R  C  W  P  L  H  A  C  *  Q   : V  D  G  G  *  K  R  T  S  S  Y  S  L  H  T  W  P  A  *  T  V  G  L  V  D  V  L  A  V  K  T  C  *  C  L  A   : E  C  Q  G  T  T  S  R  I  S  T  W  N  *  R  R  Q  K  F  Q  R  *  T  S  C  Q  I  S  L  F  A  S  I  A  S  D  S  I  L  L  L  S  V  V  L  T   : D  T  I  T  M  A  P  Y  Q  T  N  V  L  Q  G  Q  R  R  C  P  S  L  C  L  C  S  S  I  C  H  Q  L  Q  P  A   : V  P  K  W  Y  A  V  E  D  A  Y  L  S  G  C  G  I  C  L  C  L  F  C  C  C  S  C  V  P  W  S  S  T  F  N  H  S  A  P  S  N  A  M  D  W  S  P  P  Y  V  R  M  D  I  Y  T  F  L  P  L  V  R  K  L  S  A  L  S  L  S  V  G  K  G  C  G  K  S  T  W  S  I  S  G  S  S  C  I  F  G  L  *  T  W  K  R :   S  S  A  A  T  I  M  L  *  Q  *  S  M  V  L  W  V  R  D  G  I  S  C  H  C  S  P  S  I  A  W  C  F  W  S  H  F  F  V  F  E  :  V  R  F  D  G  R  R  R  P  Y  F  D  V  L  H  D  I  C  F  R  A  S  I  D  *  I  I  R  E  G  L  *  R  K  E  H  T  K  E  *  E  C  V  F  L  M  L  I  M  S  I  F  L  V  L  A  *  L  Q  A  I  I  F  L  I  S  F  V  T  C  F  D  I  F  F  L  V  K  I  C  R  I  C  W  E  I  I  Y  L  L  M  *  F  L  F  F  L  L  R  L  K  R  C  M  F  S  V  Y  A  S  *  I  F  *  L  I  W  M  R  I  I  D  Q  F  S  S  V  W  N  T  S  I  L  V  V  N  S  I  Y  S  F  L  *  L  L  S  P  L  I  Y  V  N  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59965" stop="60219"/>
                    <exon start="61631" stop="61751"/>
                    <exon start="62405" stop="62590"/>
                    <exon start="62817" stop="62980"/>
                    <exon start="63767" stop="63874"/>
                    <exon start="64125" stop="64262"/>
                    <exon start="64341" stop="64445"/>
                    <exon start="64680" stop="64965"/>
                    <exon start="65057" stop="65180"/>
                    <exon start="66139" stop="66280"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1626</number_coding_nucleotides>
                  <number_encoded_amino_acids>542</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFFLHCSVMRISFLRFGVLFLLCNCLIGAYCSKSDEAYVTLLYGDEFLLGVRVLGKSIRDTGSTKDMVVLVSDGVSQYAKHLLQADGWIVEKISLLANPNQVRPKRFWGVYTKLKIFNMTTYKKVVYLDADTIVVKSIEDLFKCGKFCANLKHSERLNSGVMVVEPSEKVFNDMMSKVTTLPSYTGGDQGFLNSYYVGFANAQVYEPNLPSDVLNSRKVPEMERLSTLYNADVGLYMLANKWMVDEKELRVIHYTLGPLKPWDWWTSWLLKPVDVWQNVRVQLQESLPGTRGGKNSRDELLVKFLYLLPLLLIAFCYYRSFLQTQSLWHHIRQMYYKVRGGVLAYASVPPSAISSNQQFPNGMQLKMPTYLGAVSVCVCFAAALVSLGLPLLIIPRQVMPWTGLLLMYEWTFTLFFLLFGSYLHLVYQWGRVAANQPGQFPAHPVSLDYEPGKGHQRQQSCCDNEAWYYGLGMAFLAIAAPALPGVFGVTSLFLRLGLMVVGGLILTSFMTYASEHLSIRSFARGFEERNTPRSRSVCFLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="74490" PGL_stop="75765"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74490" e_stop="74776"/>
            <exon e_start="75353" e_stop="75765"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.912" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74490" e_stop="74776" e_length="287"/>
          </exon>
          <intron i_serial="1" don_prob="0.912" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74777" i_stop="75352" i_length="576"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="75353" e_stop="75765" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74490" stop="74776"/>
              <exon start="75353" stop="75765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334804" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAATCTGAGGTTTCCGACGAGGAATTTCCGGTCAGTTTCGCCTGAAGCGAAAGATTTGTTGAGGAAGATGATATGTAAAGATGTTTCCAGAAGATTTTCAGCTGAACAAGTATTGA : GACATCCATGGGTGCTTAATGGAGGAGAAACAAGATCAATGGTTGATTGAACTTGAACAAGATACTAATAAATACTAGTAGCAGTACAAATTTTGATGATAAAAAAGCTTCTTCTAATGTGTTTGTTTGTGTATATTGCACCAAAAAAATAAAAATAAAATTATGGTTTGTTATGTTGTGGAGAAGAATCTTGTAGATGATAATGAATCTCCTACTTTATATTATAATATAACAAGAAGAAAAAAAATTTCAGGCTATATAAAAAGATCCAAGCTTACCCCACCTTTATATTTATTATTATTATTTTTAATTATAAAGGGTTGAGGGAGAGAGGGATATATGTATGTTTTGGTGCTGTATCAAAGTTTTGTTGTTGAGTTTACTATGTAATAAAAAAAATTTCTACTTTTGTT</gDNA_template>
            <first_frame> W  G  C  G  Y  A  V  L  R  C  A  G  G  F  N  G  E  R  V  *  *  E  S  *  C  V  E  F  G  G  Y  F  V  Y  Y  A  F  W  G  S  S  F  L  R  *  N  A  D  *  N  F  S  S  C  S  Q  R  E  S  E  V  S  D  E  E  F  P  V  S  F  A  *  S  E  R  F  V  E  E  D  D  M  *  R  C  F  Q  K  I  F  S  *  T  S  I  E :   T  S  M  G  A  *  W  R  R  N  K  I  N  G  *  L  N  L  N  K  I  L  I  N  T  S  S  S  T  N  F  D  D  K  K  A  S  S  N  V  F  V  C  V  Y  C  T  K  K  I  K  I  K  L  W  F  V  M  L  W  R  R  I  L  *  M  I  M  N  L  L  L  Y  I  I  I  *  Q  E  E  K  K  F  Q  A  I  *  K  D  P  S  L  P  H  L  Y  I  Y  Y  Y  Y  F  *  L  *  R  V  E  G  E  R  D  I  C  M  F  W  C  C  I  K  V  L  L  L  S  L  L  C  N  K  K  N  F  Y  F  C  </first_frame>
            <second_frame>  G  V  V  G  T  P  Y  Y  V  A  P  E  V  L  M  G  K  E  Y  N  E  K  V  D  V  W  S  L  G  V  I  L  Y  I  M  L  S  G  V  P  P  F  Y  G  E  T  P  T  E  T  F  Q  A  V  L  R  G  N  L  R  F  P  T  R  N  F  R  S  V  S  P  E  A  K  D  L  L  R  K  M  I  C  K  D  V  S  R  R  F  S  A  E  Q  V  L   : R  H  P  W  V  L  N  G  G  E  T  R  S  M  V  D  *  T  *  T  R  Y  *  *  I  L  V  A  V  Q  I  L  M  I  K  K  L  L  L  M  C  L  F  V  Y  I  A  P  K  K  *  K  *  N  Y  G  L  L  C  C  G  E  E  S  C  R  *  *  *  I  S  Y  F  I  L  *  Y  N  K  K  K  K  N  F  R  L  Y  K  K  I  Q  A  Y  P  T  F  I  F  I  I  I  I  F  N  Y  K  G  L  R  E  R  G  I  Y  V  C  F  G  A  V  S  K  F  C  C  *  V  Y  Y  V  I  K  K  I  S  T  F  V </second_frame>
            <third_frame>   G  L  W  V  R  R  I  T  L  R  R  R  F  *  W  G  K  S  I  M  R  K  L  M  C  G  V  W  G  L  F  C  I  L  C  F  L  G  F  L  L  F  T  V  K  R  R  L  K  L  F  K  L  F  S  E  G  I  *  G  F  R  R  G  I  S  G  Q  F  R  L  K  R  K  I  C  *  G  R  *  Y  V  K  M  F  P  E  D  F  Q  L  N  K  Y  *  :  D  I  H  G  C  L  M  E  E  K  Q  D  Q  W  L  I  E  L  E  Q  D  T  N  K  Y  *  *  Q  Y  K  F  *  *  *  K  S  F  F  *  C  V  C  L  C  I  L  H  Q  K  N  K  N  K  I  M  V  C  Y  V  V  E  K  N  L  V  D  D  N  E  S  P  T  L  Y  Y  N  I  T  R  R  K  K  I  S  G  Y  I  K  R  S  K  L  T  P  P  L  Y  L  L  L  L  F  L  I  I  K  G  *  G  R  E  G  Y  M  Y  V  L  V  L  Y  Q  S  F  V  V  E  F  T  M  *  *  K  K  F  L  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74491" stop="74776"/>
                    <exon start="75353" stop="75402"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVVGTPYYVAPEVLMGKEYNEKVDVWSLGVILYIMLSGVPPFYGETPTETFQAVLRGNLRFPTRNFRSVSPEAKDLLRKMICKDVSRRFSAEQVLRHPWVLNGGETRSMVD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75470" stop="75676"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVCLCILHQKNKNKIMVCYVVEKNLVDDNESPTLYYNITRRKKISGYIKRSKLTPPLYLLLLFLIIKG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 22 chains have been computed
$ 
$ memory statistics:
$ 157376 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 15737 bytes was the average size of a spliced alignment
$ 16152 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1794 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 29 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-10 03:41:18
-->
