<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-21 02:05:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549727" ref_strand="+" ref_description="SGN-E549727 [TUS-6-I17]">
      <seq>aaagttactgcggattttgtcacgccggagaggaggaaggtttctgcgaattttgtcacgccggagaggaagaaagctacagcggatttttatacacctggagaggagtaaagttgcggcggaattgagcacaccagcgagagatcggactgagaatgtcaagacaagtgatcagcataggtggccagggaggtcaaagtcactaaattcaagttttctgacacgaagcatggattgtggttctattgacaagcctaaatttggatccggaagtgtcactagttcgtcaatgaagtcggtgattgatatatatcatagagctagaattgaagctaaattgaaacctcaaagtgataatgatgaggtcgatatgaagtcagcttatggatcagctatgtctgctgatacattggcttcagatagtgaaagtgtctcttcagggagtacttcaggtgtccatgatggtccgagtgttattcatggacgaggaggtccccgtggtatagttgtgcctgctaggttttggcaagagactaacaacagaatcagacgagggccagaacttggttcttctatggacaatggcaatttgaaaacagtggcttcttctaagcaaatgggaaacaagaagtttctgactgatagccccagaacatcagcccgggttgtcccagcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="7713" stop="6436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7413" g_stop="6736" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E549727" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7413" e_stop="6736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTACTGCGGATTTTGTCACGCCGGAGAGGAGGAAGGTTTCTGCGAATTTTGTCACGCCGGAGAGGAAGAAAGCTACAGCGGATTTTTATACACC-GGAGAGGAGTAAAGTTGCGGCGGAATTGAGCACACCAGCGAGAGATCGGACTGAGAATGTCAAGACAAGTGATCAGCATAGGTGGCCAGGGAGGTCAAAGTCACTAAATTCAAGTTTTCTGACACGAAGCATGGATTGTGGTTCTATTGACAAGCCTAAATTTGGATCCGGAAGTGTCACTAGTTCGTCAATGAAGTCGGTGATTGATATATATCATAGAGCTAGAATTGAAGCTAAATTGAAACCTCAAAGTGATAATGATGAGGTCGATATGAAGTCAGCTTATGGATCAGCTATGTCTGCTGATACATTGGCTTCAGATAGTGAAAGTGTCTCTTCAGGGAGTACTTCAGGTGTCCATGATGGTCCGAGTGTTATTCATGGACGAGGAGGTCCCCGTGGTATAGTTGTGCCTGCTAGGTTTTGGCAAGAGACTAACAACAGAATCAGACGAGGGCCAGAACTTGGTTCTTCTATGGACAATGGCAATTTGAAAACAGTGGCTTCTTCTAAGCAAATGGGAAACAAGAAGTTTCTGACTGATAGCCCCAGAACATCAGCCCGGGTTGTCCCAGCTTCT</genome_strand>
        <mrna_strand>AAAGTTACTGCGGATTTTGTCACGCCGGAGAGGAGGAAGGTTTCTGCGAATTTTGTCACGCCGGAGAGGAAGAAAGCTACAGCGGATTTTTATACACCTGGAGAGGAGTAAAGTTGCGGCGGAATTGAGCACACCAGCGAGAGATCGGACTGAGAATGTCAAGACAAGTGATCAGCATAGGTGGCCAGGGAGGTCAAAGTCACTAAATTCAAGTTTTCTGACACGAAGCATGGATTGTGGTTCTATTGACAAGCCTAAATTTGGATCCGGAAGTGTCACTAGTTCGTCAATGAAGTCGGTGATTGATATATATCATAGAGCTAGAATTGAAGCTAAATTGAAACCTCAAAGTGATAATGATGAGGTCGATATGAAGTCAGCTTATGGATCAGCTATGTCTGCTGATACATTGGCTTCAGATAGTGAAAGTGTCTCTTCAGGGAGTACTTCAGGTGTCCATGATGGTCCGAGTGTTATTCATGGACGAGGAGGTCCCCGTGGTATAGTTGTGCCTGCTAGGTTTTGGCAAGAGACTAACAACAGAATCAGACGAGGGCCAGAACTTGGTTCTTCTATGGACAATGGCAATTTGAAAACAGTGGCTTCTTCTAAGCAAATGGGAAACAAGAAGTTTCTGACTGATAGCCCCAGAACATCAGCCCGGGTTGTCCCAGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243876" ref_strand="+" ref_description="SGN-E243876 [cLED-35-G16]">
      <seq>aagttactgcggattttgtcacgccggagaggaggaaggtttctgcgaattttgtcacgccggagaggaagaaagctacagcggatttttatacaccggagaggagtaaagttgcggcggaattgagcacaccagcgagagatcggactgagaatgtcaagacaagtgatcagcataggtggccagggaggtcaaagtcactaaattcaagttttctgacacgaagcatggattgtggttctattgacaagcctaaatttggatccggaagtgtcactagttcgtcaatgaagtcggtgattgatatatatcatagagctagaattgaagctaaattgaaacctcaaagtgataatgatgaggtcgatatgaagtcagcttatggatcagctatgtctgctgatacattggcttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="7712" stop="6696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7412" g_stop="6996" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E243876" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7412" e_stop="6996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTACTGCGGATTTTGTCACGCCGGAGAGGAGGAAGGTTTCTGCGAATTTTGTCACGCCGGAGAGGAAGAAAGCTACAGCGGATTTTTATACACCGGAGAGGAGTAAAGTTGCGGCGGAATTGAGCACACCAGCGAGAGATCGGACTGAGAATGTCAAGACAAGTGATCAGCATAGGTGGCCAGGGAGGTCAAAGTCACTAAATTCAAGTTTTCTGACACGAAGCATGGATTGTGGTTCTATTGACAAGCCTAAATTTGGATCCGGAAGTGTCACTAGTTCGTCAATGAAGTCGGTGATTGATATATATCATAGAGCTAGAATTGAAGCTAAATTGAAACCTCAAAGTGATAATGATGAGGTCGATATGAAGTCAGCTTATGGATCAGCTATGTCTGCTGATACATTGGCTTCAG</genome_strand>
        <mrna_strand>AAGTTACTGCGGATTTTGTCACGCCGGAGAGGAGGAAGGTTTCTGCGAATTTTGTCACGCCGGAGAGGAAGAAAGCTACAGCGGATTTTTATACACCGGAGAGGAGTAAAGTTGCGGCGGAATTGAGCACACCAGCGAGAGATCGGACTGAGAATGTCAAGACAAGTGATCAGCATAGGTGGCCAGGGAGGTCAAAGTCACTAAATTCAAGTTTTCTGACACGAAGCATGGATTGTGGTTCTATTGACAAGCCTAAATTTGGATCCGGAAGTGTCACTAGTTCGTCAATGAAGTCGGTGATTGATATATATCATAGAGCTAGAATTGAAGCTAAATTGAAACCTCAAAGTGATAATGATGAGGTCGATATGAAGTCAGCTTATGGATCAGCTATGTCTGCTGATACATTGGCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427379" ref_strand="+" ref_description="SGN-E427379 [STM-48-I6]">
      <seq>cagaatccgaaaaggccgccattgttgccttcagaagctcagaatggaccttctagaaaaccgaaatctagagaggttacttctaggtacctttcgacttcttcttcgtcttctgtctcaacaacgtcgtcttcgaatacttcgactacttactcttcatcgtctaattcgattgcctcactgaggactccatcgccgatggggactaggacggttcgacctgctgcaacgccggttcagaattccggttcagttaaacggtcccagtctgtggaccggagacgaccggtgacgccagcgtctacggagaagtctgctgcggcgaagcagctgttgaattccagtaggagtttatccgtttcctttcaaggtcagtctttctctatacctgttagtaaggcaaaaccccctcctgcgacgaacaatattggaagtgtgaggaaaggtacgccggagaggaggaaagttactgcggaatttgtcacgccggagaggaagaaggttactgcggaatttgtcacgccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="8175" stop="7050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7875" g_stop="7350" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E427379" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7875" e_stop="7350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCCGAAAAGACCGCCATTGTTGCCTTCAGAAGCTCAGAATGGACCTTCTAGAAAACCGAAATCTAGAGAGGTTACTTCAAGGTATCTTTCGACTTCTTCTTCATCTTCTGTCTCAACGACGTCGTCTTCGAATACTTCGACTACTTACTCTTCATCGTCTAATACGATTGCCTCACTGAGGACTCCATCGCCGATGGGGACTAGGACGGTTCGACCTGCTGCGACGCCGGTTCAAAATTCCGGTTCAGTTAAACGGTCACAGTCGGTGGACCGGAGACGACCGGTAACGCCAGCGTCTACGGAGAAGTCTGCTGCGGCGAAGCAGCTGTTGAATTCCAGTAGGAGTTTATCCGTTTCCTTTCAAGGTCAGTCTTTCTCTATACCTGTTAGTAAGGCAAAGCCCCCTCCTGCGACGAACAATATTGGAAATGTGAGGAGGGGTACGCCGGAGAGGAGGAAAGTTACTGCGGATTTTGTCACGCCGGAGAGGAGGAAGGTTTCTGCGAATTTTGTCACGCCGG</genome_strand>
        <mrna_strand>CAGAATCCGAAAAGGCCGCCATTGTTGCCTTCAGAAGCTCAGAATGGACCTTCTAGAAAACCGAAATCTAGAGAGGTTACTTCTAGGTACCTTTCGACTTCTTCTTCGTCTTCTGTCTCAACAACGTCGTCTTCGAATACTTCGACTACTTACTCTTCATCGTCTAATTCGATTGCCTCACTGAGGACTCCATCGCCGATGGGGACTAGGACGGTTCGACCTGCTGCAACGCCGGTTCAGAATTCCGGTTCAGTTAAACGGTCCCAGTCTGTGGACCGGAGACGACCGGTGACGCCAGCGTCTACGGAGAAGTCTGCTGCGGCGAAGCAGCTGTTGAATTCCAGTAGGAGTTTATCCGTTTCCTTTCAAGGTCAGTCTTTCTCTATACCTGTTAGTAAGGCAAAACCCCCTCCTGCGACGAACAATATTGGAAGTGTGAGGAAAGGTACGCCGGAGAGGAGGAAAGTTACTGCGGAATTTGTCACGCCGGAGAGGAAGAAGGTTACTGCGGAATTTGTCACGCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333224" ref_strand="+" ref_description="SGN-E333224 [cTOD-20-O22]">
      <seq>agttatgctcgcaaatatttccttcaggtcccactttctctctcctctttctttctcctccgcgtatattgctcgccggcgttcgtaacggtcatatttccgggtttttgagagggtgaatttttcggagagatgtgaagaattgtgagaagtggcaatggtggctgcagtatcaacaacaaagcccaatcagaaggtcacatctaatggtttgagttaccagaatccgaaaagaccgccattgttgccttcagaagctcagaatggaccttctagaaaaccgaaatctagagaggttacttcaaggtatctttcgacttcttcttcatcttctgtctcaacgacgtcgtcttcgaatacttcgactacttactcttcatcgtctaatacgattgcctcactgaggactccatcgccgatggggactaggacggttcgacctgctgcgacgccggttcaaaattccggttcagttaaacggtcacagtcggtggaccggagacgaccggtaacgccagcgtctacggagaagtctgctgcggcgaagcagctgttgaattccagtaggagtttatccgtttcctttcaaggtcagtctttctctatacctgttagtaaggcaaagccccctcctgcgacgaacaatattggaaatgtgaggaggggtacgccggagaggaagaaagttactgcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="8551" stop="7100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8251" g_stop="8150" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8149" i_stop="7994" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7993" g_stop="7400" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="696" r_length="594" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E333224" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8251" e_stop="8150"/>
          <exon e_start="7993" e_stop="7400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTATGCTCGCAAATATTTCCTTCAGGTCCCACTTTCTCTCTCCTCTTTCTTTCTCCTCCGCGTATATTGCTCGCCGGCGTTCGTAACGGTCATATTTCCGGTATGTTTCTCTCTCTAAAAATTACAAAGTAAAAAATCTCTACATTAATACAGGCATTATTAATACACATACTATTAATTTCAGATTGTAGTAGTAATCTCTTCGTATTTTGCACTTTATTACTCTATAAATTCAGCTGAATTTCTGGTGAATTAGGGTTTTTGAGAGGGTGAATTTTTCGGAGAGATGTGAAGAATTGTGAGAAGTGGCAATGGTGGCTGCAGTATCAACAACAAAGCCCAATCAGAAGGTCACATCTAATGGTTTGAGTTACCAGAATCCGAAAAGACCGCCATTGTTGCCTTCAGAAGCTCAGAATGGACCTTCTAGAAAACCGAAATCTAGAGAGGTTACTTCAAGGTATCTTTCGACTTCTTCTTCATCTTCTGTCTCAACGACGTCGTCTTCGAATACTTCGACTACTTACTCTTCATCGTCTAATACGATTGCCTCACTGAGGACTCCATCGCCGATGGGGACTAGGACGGTTCGACCTGCTGCGACGCCGGTTCAAAATTCCGGTTCAGTTAAACGGTCACAGTCGGTGGACCGGAGACGACCGGTAACGCCAGCGTCTACGGAGAAGTCTGCTGCGGCGAAGCAGCTGTTGAATTCCAGTAGGAGTTTATCCGTTTCCTTTCAAGGTCAGTCTTTCTCTATACCTGTTAGTAAGGCAAAGCCCCCTCCTGCGACGAACAATATTGGAAATGTGAGGAGGGGTACGCCGGAGAGGAGGAAAGTTACTGCGGA</genome_strand>
        <mrna_strand>AGTTATGCTCGCAAATATTTCCTTCAGGTCCCACTTTCTCTCTCCTCTTTCTTTCTCCTCCGCGTATATTGCTCGCCGGCGTTCGTAACGGTCATATTTCCG............................................................................................................................................................GGTTTTTGAGAGGGTGAATTTTTCGGAGAGATGTGAAGAATTGTGAGAAGTGGCAATGGTGGCTGCAGTATCAACAACAAAGCCCAATCAGAAGGTCACATCTAATGGTTTGAGTTACCAGAATCCGAAAAGACCGCCATTGTTGCCTTCAGAAGCTCAGAATGGACCTTCTAGAAAACCGAAATCTAGAGAGGTTACTTCAAGGTATCTTTCGACTTCTTCTTCATCTTCTGTCTCAACGACGTCGTCTTCGAATACTTCGACTACTTACTCTTCATCGTCTAATACGATTGCCTCACTGAGGACTCCATCGCCGATGGGGACTAGGACGGTTCGACCTGCTGCGACGCCGGTTCAAAATTCCGGTTCAGTTAAACGGTCACAGTCGGTGGACCGGAGACGACCGGTAACGCCAGCGTCTACGGAGAAGTCTGCTGCGGCGAAGCAGCTGTTGAATTCCAGTAGGAGTTTATCCGTTTCCTTTCAAGGTCAGTCTTTCTCTATACCTGTTAGTAAGGCAAAGCCCCCTCCTGCGACGAACAATATTGGAAATGTGAGGAGGGGTACGCCGGAGAGGAAGAAAGTTACTGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689408" ref_strand="+" ref_description="SGN-E689408 [t3_tus_84_J19]">
      <seq>ccctttaatatgctcgcaaatatttccttcaggtcccacttcctttctactctttctttctcctccgcgtatattgctcgccggcgttcgtaacggtcatatttccgggtttttgacagggtgaatttttcggagagatgtgaagaattgtgagaagtggcaatggtggctgcagtatcaacaacaaagcccaatcagaaggtcacatctaatggtttgagttaccagaatccgaaaagaccgccattgttgccttcagaagctcagaatggaccttctagaaaaccgaaatctagagaggttacttcaaggtatctttcgacttcttcttcatcttctgtctcaacgacgtcgtcttcgaatacttcgactacttactcttcatcgtctaatacgattgcctcactgaggactccatcgccgatggggactaggacggttcgacctgctgcgacgccggttcaaaattccggttcagttaaacggtcacagtcggtggaccggagacgaccggtaacgccagcgtctacggagaagtctgctgcggcgaatcagctgttgaattccagtaggagtttatccgtttcctttcaaggtcagtctttctctatacctgttagtaaggcaaagccccctcctgcgaccaacaatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="8548" stop="7146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8249" g_stop="8150" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="107" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8149" i_stop="7994" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7993" g_stop="7446" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="655" r_length="548" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E689408" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8249" e_stop="8150"/>
          <exon e_start="7993" e_stop="7446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGCTCGCAAATATTTCCTTCAGGTCCCACTTTCTCTCTCCTCTTTCTTTCTCCTCCGCGTATATTGCTCGCCGGCGTTCGTAACGGTCATATTTCCGGTATGTTTCTCTCTCTAAAAATTACAAAGTAAAAAATCTCTACATTAATACAGGCATTATTAATACACATACTATTAATTTCAGATTGTAGTAGTAATCTCTTCGTATTTTGCACTTTATTACTCTATAAATTCAGCTGAATTTCTGGTGAATTAGGGTTTTTGAGAGGGTGAATTTTTCGGAGAGATGTGAAGAATTGTGAGAAGTGGCAATGGTGGCTGCAGTATCAACAACAAAGCCCAATCAGAAGGTCACATCTAATGGTTTGAGTTACCAGAATCCGAAAAGACCGCCATTGTTGCCTTCAGAAGCTCAGAATGGACCTTCTAGAAAACCGAAATCTAGAGAGGTTACTTCAAGGTATCTTTCGACTTCTTCTTCATCTTCTGTCTCAACGACGTCGTCTTCGAATACTTCGACTACTTACTCTTCATCGTCTAATACGATTGCCTCACTGAGGACTCCATCGCCGATGGGGACTAGGACGGTTCGACCTGCTGCGACGCCGGTTCAAAATTCCGGTTCAGTTAAACGGTCACAGTCGGTGGACCGGAGACGACCGGTAACGCCAGCGTCTACGGAGAAGTCTGCTGCGGCGAAGCAGCTGTTGAATTCCAGTAGGAGTTTATCCGTTTCCTTTCAAGGTCAGTCTTTCTCTATACCTGTTAGTAAGGCAAAGCCCCCTCCTGCGACGAACAATATTG</genome_strand>
        <mrna_strand>ATATGCTCGCAAATATTTCCTTCAGGTCCCACTTCCTTTCTACTCTTTCTTTCTCCTCCGCGTATATTGCTCGCCGGCGTTCGTAACGGTCATATTTCCG............................................................................................................................................................GGTTTTTGACAGGGTGAATTTTTCGGAGAGATGTGAAGAATTGTGAGAAGTGGCAATGGTGGCTGCAGTATCAACAACAAAGCCCAATCAGAAGGTCACATCTAATGGTTTGAGTTACCAGAATCCGAAAAGACCGCCATTGTTGCCTTCAGAAGCTCAGAATGGACCTTCTAGAAAACCGAAATCTAGAGAGGTTACTTCAAGGTATCTTTCGACTTCTTCTTCATCTTCTGTCTCAACGACGTCGTCTTCGAATACTTCGACTACTTACTCTTCATCGTCTAATACGATTGCCTCACTGAGGACTCCATCGCCGATGGGGACTAGGACGGTTCGACCTGCTGCGACGCCGGTTCAAAATTCCGGTTCAGTTAAACGGTCACAGTCGGTGGACCGGAGACGACCGGTAACGCCAGCGTCTACGGAGAAGTCTGCTGCGGCGAATCAGCTGTTGAATTCCAGTAGGAGTTTATCCGTTTCCTTTCAAGGTCAGTCTTTCTCTATACCTGTTAGTAAGGCAAAGCCCCCTCCTGCGACCAACAATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736054" ref_strand="+" ref_description="SGN-E736054 [LC04AF11]">
      <seq>ttcgcgtatccatccgatagggatgctataaacaataaaacaaagagaatcatcactttttttcactgtataattttccagagactggaaattttgctactcttcttccttaatcgttcgaaaaattaattagtacattcatggaaacctagaaatacatcaactaacggatctcccattttttcctttttgaaacgaatcaattgctgcaatatacggttatatataaccatttttcaaatttctgaatcaatggatccgtctatcatgaagctccttgaagaagacgaggatgaaacaatgcattcgggggcggatgtggaggcattcactgctgccctaaacagggatatcggtggagataattcacaatctcagccttcggattccgatagcgtgccattgtctcaaggaagcagttatacctcaaatcagtttgccccatggcaaactgctaaccatgacgaaaatgccagtcgttgtaaccttcaagattcagagaccatccagccaaaggaggaaaatgtgtctgatatgcagttgaagagacttgatacagattctcagaatcagcagcaaaaaaatgattcatcacaggagatcaattcccttcccgtgcagcatatatcccaggacagttatcaaaccacagaggttgaacaggacacacttcattcttctagagcagtgaatatgccgaatcctgaaaagaatacgcaaaatccagaatctccacatctgaatttacagggaacaaataatttacagcccatgcagagtttgacaacaggaactagtagtctgccacgtgtggcaacagtggcaagtaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="33398" stop="37567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33676" g_stop="33966" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33967" i_stop="34094" i_length="128">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34095" g_stop="34200" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="397" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34201" i_stop="36831" i_length="2631">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36832" g_stop="37267" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="833" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E736054" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33676" e_stop="33966"/>
          <exon e_start="34095" e_stop="34200"/>
          <exon e_start="36832" e_stop="37267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCGTATTCATTAGAAATTTATGCTATAAACAATAAAACAAAGAGAATCATCAAATTTTTTCACTGTATAATTTTCCAGAGACTGGAAATTTTGCTACTCTTCTTCCTTAATCGTTCGAAAAATTAATTCGTACATTCATGGAAACCTAGAAATACATCAACTAACGGATCTCCCATTTTTTCCTTTTTGAAACGAATTAATTGCTGCAATATACGGTTATATATAACCATTTTTCAAATTTCTGAATCAATGGATCCGTCTATCATGAAGCTCCTTGAAGAAGACGAGGTTGGTACTTTTTTTTTTTTTTCGAATTAGCCCTTTTCATGTTCTGGGTGACAGATATGTATGTTTGTTGGGTGATAGATATATATGTTTATGGTGAAATGGTGGATTTATGTGAATTTTGGATATAGGATGAAACAATGCATTCGGGGGCGGATGTGGAGGCATTCACTGCTGCCCTAAACAGGGATATCGGTGGAGATAATTCACAATCTCAGCCTTCGGATTCCGATAGCGGTAATATTATCACTATTTAGCAATTGAATTTTTCAATTTCACTATAGATTGTCATTCAACTAAGTTTATTGCCAACTGTATAGATTAGGCTAAATTATGGTCGTTAGATGTATATGATATGTTGGCGTTACTAACATGGGAAAATAAGTAGTAGGGAGGCTTATAGGGTTAGTAATTGCTAATGGAAGGGTAGAAGTAGGGGAAGTTGTAATTGTTGTCAAGAATTTGGAGGGGAGAAAGTGTGGGTACTTTATGGCACCTCTGGAATTTTTGTGGTGGAGAGAAGCTAAAATATGGCAAAGTTGTTGGGTGTGCACTGTGCATGGGGTGGTATGGAACCATGAAGGTCTATGTATTAGATGTCAACTATTTTATAGAGGAGCTTTAGAATTTTTACGTCAAAATAGGTTCTATAAGTAGTATCGGGATTTAGTTGACACGGGGCTTATTAATCTAACTGAATTATTGTTATTTCAATTCTTTTTTTCATATGATTATTGCGATTGATTATTGTTATTTTTCTATTATTACGTGTACATCTGTTCCTATTGTGCATTTCCTAGAACACACTTAAATTCACTTGGTGCTTGAAGCCAGAACCTTGGTGCCTTCTAGCTTTTCATCTTTGAACACTGAATTATACTAATAAAGTTTTTCCCTACTCAAAAAAGCAGTATTTACGGTGCTACTTTCTTTTTCTTTTTTTTTTTGAAATAAGTAACTTTGTATTATATCACAAAAGAGTATATGGGTTGTACTGAAACATAATACACAGATGTCTCCTATTCCACTGGTTTCACTCTATATTGAGTCTAAAACATCTGTTACTGATACAGTGTCATTGGAGTGTACTTGATTACTCCAAAAACATAACAATTAAATGCAGTTTAATGACTTTCTGAACATCATTCGCTATGCTCTCAAAACACCTAGAATTCCTTTCTTTTCAAATAGTCCACCATATACTCGCAGGGACAATTCTCATATGTTTCTGACCTTTGCATTCACCCCTGCTGCCTCCCAACTCTTGAAAGCCTCTGATACCTTACTAGGCATGATCCAGGAGATACCTTTGAGGTTCAAAAAAATCCTCCATAGTTGTTGGGTATACTTGCAGTGTAGGAACAGATGGTTCACCGTCTCTAATGCCTCCCCACAAAGGAAACAACTATAGCATAACCTTATCCCTCTTTTCTTCAACTTATCGTGATGTTACGATGTTTTAGAAAAGGTCAAAGTTCCTTTTTTTCTTCTTTTAATGTAGGTCAACCCATTTCAGTATTAACAGTGATACTCTCTTATAATAATGTTTCCGGATCCGTCTATTACATTTTGCCTCTGTTGCTTTAGTATCATCCTCCTATTATCTCATTCTTCGATTTCTTATTAGCATATGTTATTTTTTTTGCTTTCGGCTGTTGTATTATTTGCTATTGATACTGTTTTCTTCTTCATTATGGTATTTCCTTTTCAAAATTGCTTTAAACTGCTTTATTTGAGCTGAAAATCTTTTGGAAACAACTCCGTTACCTCCACAAGTTGGGGATGCGATATGTCACCCTCCTGAGACCCCACTTATGGACACACTAGGTATGTTGTTGTTGTTGTAATGTATGTCAAACCTCCTCAAGCAGGAGTCAAACAATGGTTTTTCCTGCTTTGTCCTCTTGATGACTCGAACCTTTAACCCTCAATAACATCTTTTCCTATTTATCCACAAGTATACTACATCAAAGTAGCCATCTATTACAAACTAGACTGACTCCATCTGTGCTTTTTGTCATAAATAGTCTATAACATCAAAAAGTTCTTCTGCCTGTACTAAAACTTCTGTTTACACCAAAAATATACAATTCATCTTAAAATTCTGCAAATTGTTCTTCTTGCCCTCAAAACATCTTTGATTCCTTTCTTTCCACACTGTCCACCATATACAAGCTGGGACAATCCTCCATCTCTCCTCCTTAATTGTAGTATTGCCTATATTGATCTAACAATTTAGGAGTTGTGCTATGTTTCTTGGTTTCACCCAAATGATCTTCCTAAGGCTGCTGAATATTCTCCATAATTGATCTGTCCATTTGCAATGCAGGAAGAGATGGTTGACTATCTCTGCCTCTGTTCCTCACACAAAAAGCATCTTGAACATAGTTGAAACTTCCTCTTCTTTATATTTTTTTGTGTCATCACTGCTTCCTTTGCTAGTAACCATGTGAAACAGTTTACCTTGTATGGGATTTTAGGTTTCCATATCATCTGCCATGGCCAGAGCTCCTTCCTGTCATTTGAATTTGAATGATTGAGGTCTTTGTAAGCTGACTTGACACTGAAAACCCCTTTGCTGTAAGGGTCCTTTTGACTAAGCTATCCTTCCCTTGCCTTAACAAAGAGAATTTTTTCCCCAGTTTGCCAATTCATCTGTGTTTCATATAGCAGCAGAGTAAACATTTCAGAGTTGCATGAGAATATCTAAGCTGAAAGAGTTTTGATGTGAAGACAATTTGTGATTGTGGTCGGAACTTGGTCTTAGAAAGCTACTGTATCTTCATCACTTGCATACTCTGTCTTCTTTCAGTATTCTGTTTCTCCTTCCTTGGGAACAATCTTATCTTTTGCATAATTTACAAACAGTGCCATTGTCTCAAGGAAGCAGTTATACCTCAAATCAGTTTGCCCCATGGCAAACTGCTAACCATGACGAAAATGCCAGTCGTTGTAACCTTCAAGATTCAGAGACCATCCAGCCAAAGGAGGAAAATGTGTCTGATATGCAGTTGAAGAGACTTGATACAGATTCTCAGAATCAGCAGCAAAAAAATGATTCATCACAGGAGATCAATTCCCTTCCCGTGCAGCATATATCCCAGGACAGTTATCAAACCACAGAGGTTGAACAGGACACACTTCATTCTTCTAGAGCAGTGAATATGCCGAATCCTGAAAAGAATACGCAAAATCCAGAATCTCCACATCTGAATTTACAGGGAACAAATAATTTACAGCCCATGCAGAGTTTGACAACAGGAACTAGTAGTCTGCCACGTGTGGCAACAGTGGCAAGTAATCA</genome_strand>
        <mrna_strand>TTCGCGTATCCATCCGATAGGGATGCTATAAACAATAAAACAAAGAGAATCATCACTTTTTTTCACTGTATAATTTTCCAGAGACTGGAAATTTTGCTACTCTTCTTCCTTAATCGTTCGAAAAATTAATTAGTACATTCATGGAAACCTAGAAATACATCAACTAACGGATCTCCCATTTTTTCCTTTTTGAAACGAATCAATTGCTGCAATATACGGTTATATATAACCATTTTTCAAATTTCTGAATCAATGGATCCGTCTATCATGAAGCTCCTTGAAGAAGACGAG................................................................................................................................GATGAAACAATGCATTCGGGGGCGGATGTGGAGGCATTCACTGCTGCCCTAAACAGGGATATCGGTGGAGATAATTCACAATCTCAGCCTTCGGATTCCGATAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATTGTCTCAAGGAAGCAGTTATACCTCAAATCAGTTTGCCCCATGGCAAACTGCTAACCATGACGAAAATGCCAGTCGTTGTAACCTTCAAGATTCAGAGACCATCCAGCCAAAGGAGGAAAATGTGTCTGATATGCAGTTGAAGAGACTTGATACAGATTCTCAGAATCAGCAGCAAAAAAATGATTCATCACAGGAGATCAATTCCCTTCCCGTGCAGCATATATCCCAGGACAGTTATCAAACCACAGAGGTTGAACAGGACACACTTCATTCTTCTAGAGCAGTGAATATGCCGAATCCTGAAAAGAATACGCAAAATCCAGAATCTCCACATCTGAATTTACAGGGAACAAATAATTTACAGCCCATGCAGAGTTTGACAACAGGAACTAGTAGTCTGCCACGTGTGGCAACAGTGGCAAGTAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480540" ref_strand="+" ref_description="SGN-E480540 [cSTD-14-E8]">
      <seq>aatgccagttggtgtagccttcaacattcatgacaccatgcaggcaaaggaggaaaatttgtctgatatgcagttgaagagacttgatacagattctcagaatcagcagccaaaagatgattcatcacatgagatcaattcccttcctttgcagcatatatcccacgacagttatcacaccacagaggttgaacaggacacacttcattcttctagagcagcgagtatgcacaatcctgaaaagaatacgcaaaatccagaatctccacatctaaatttacagggggtaaataatctacaatccatgcagtctttgactacaggaactagtggtctgccacgtgtggcaacagtggcaagtaatcagtctgaatctgcaactgggtcgagcagccaagcagcaatgaatatagctaaacagggaacacaagttccttttgccatgcttttccctcacatacaaccccaacttgatagggacagggcagcgcaactccagacactttatgttaaactcaaaaaaaatgaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="36603" stop="37731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36903" g_stop="37421" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37422" i_stop="37503" i_length="82">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.711" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37504" g_stop="37516" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="533" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E480540" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36903" e_stop="37421"/>
          <exon e_start="37504" e_stop="37516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCCAGTCGTTGTAACCTTCAAGATTCA-GAGACCATCCAGCCAAAGGAGGAAAATGTGTCTGATATGCAGTTGAAGAGACTTGATACAGATTCTCAGAATCAGCAGCAAAAAAATGATTCATCACAGGAGATCAATTCCCTTCCCGTGCAGCATATATCCCAGGACAGTTATCAAACCACAGAGGTTGAACAGGACACACTTCATTCTTCTAGAGCAGTGAATATGCCGAATCCTGAAAAGAATACGCAAAATCCAGAATCTCCACATCTGAATTTACAGGGAACAAATAATTTACAGCCCATGCAGAGTTTGACAACAGGAACTAGTAGTCTGCCACGTGTGGCAACAGTGGCAAGTAATCAGTCAGAATCTGCAACTGGGTCGATCAGCCAAGCAGCAATGAATATAGCTAAACAGGGAAAACAAGTTCCTTTTGCGATGCTTTTCCCTCACATACAACCCCAACTTGATAAGGACAGGGCAGCGCAGCTCCAGACACTTTACGTTAAACTCAAAGTAATGTTATAGCTGACTTTTTTGTGCTCATTTTGCCTTCTCTGTTATGTTAGTTTTGTCATCAATTGGAAAATGTATACAGAAAAATGAAATTT</genome_strand>
        <mrna_strand>AATGCCAGTTGGTGTAGCCTTCAACATTCATGACACCATGCAGGCAAAGGAGGAAAATTTGTCTGATATGCAGTTGAAGAGACTTGATACAGATTCTCAGAATCAGCAGCCAAAAGATGATTCATCACATGAGATCAATTCCCTTCCTTTGCAGCATATATCCCACGACAGTTATCACACCACAGAGGTTGAACAGGACACACTTCATTCTTCTAGAGCAGCGAGTATGCACAATCCTGAAAAGAATACGCAAAATCCAGAATCTCCACATCTAAATTTACAGGGGGTAAATAATCTACAATCCATGCAGTCTTTGACTACAGGAACTAGTGGTCTGCCACGTGTGGCAACAGTGGCAAGTAATCAGTCTGAATCTGCAACTGGGTCGAGCAGCCAAGCAGCAATGAATATAGCTAAACAGGGAACACAAGTTCCTTTTGCCATGCTTTTCCCTCACATACAACCCCAACTTGATAGGGACAGGGCAGCGCAACTCCAGACACTTTATGTTAAACTCAAA..................................................................................AAAAATGAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422012" ref_strand="+" ref_description="SGN-E422012 [STM-33-N20]">
      <seq>agaatctgcaactgggtcgagcagccaagcagcaatgaatttagctaaacagggaaaacaagttccttttgccatgcttttccctcacatacaaccccaacttgataaggacagggcagcgcaactccagacactttacgttaaactcaaagtaatgttatagctgacttttttgtgctcattttgccttttctgttatgttagttttgtcaacaattggaatgtgtatacagaaaaatgaaatttccaaggaaagttttgtaaggaacatgagaagtataattggtgaccagatgctcaaaatggctgtatataaatttcaatctcaggcatcgaaaaactcacagtctgttcccggtcaatttcctcagtctcaggcttcacagcagcaacattcgcttatgccagccgatgattctagcaatatggcaattgagagtaaagctcaaaagttgcacgaggtggaaagccaagccgatctgcgtggagcccaaggaagccagatgccttcttctagtttaactgctgtaaaacaagaaagggatcacacaccatttccaattcagggacttaacagacaactgcaacaacatttacacttctcgcaggtatcttttnccacatttgcaaatgcagggaacaattacagtgcatattctgcatctaatgtcaactcttcaacaacacaacctcttaaacagcaatctgatgatgcacaaatgagacaatttcagttcaacagaaacagaatgcaactcagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="36971" stop="38520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37271" g_stop="37599" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37600" i_stop="37685" i_length="86">
            <donor d_prob="0.708" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37686" g_stop="37770" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="414" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37771" i_stop="37869" i_length="99">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37870" g_stop="38220" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="764" r_length="350" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E422012" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37271" e_stop="37599"/>
          <exon e_start="37686" e_stop="37770"/>
          <exon e_start="37870" e_stop="38220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCTGCAACTGGGTCGATCAGCCAAGCAGCAATGAATATAGCTAAACAGGGAAAACAAGTTCCTTTTGCGATGCTTTTCCCTCACATACAACCCCAACTTGATAAGGACAGGGCAGCGCAGCTCCAGACACTTTACGTTAAACTCAAAGTAATGTTATAGCTGACTTTTTTGTGCTCATTTTGCCTTCTCTGTTATGTTAGTTTTGTCATCAATTGGAAAATGTATACAGAAAAATGAAATTTCCAAGGAAAGTTTTGTAAGGAACATGAGAAGTATAATTGGTGACCAGATGCTCAAAATGGCTGTATATAAATTTCAATCTCAGGTAGATGAAGCAGCACTTTCAGTTGTTACATCAGTAATGAAATTCTCAATCATTGTGTATTAACTCTATATGAAAGTTTAATTCAGGCATCGAAAAACTCACAGTCCGTTCCCGGTCAATTTCCTCAGTCTCAGGCTTCACAGCAGCAACATTCGCTTATGCCAGCCGATGGTACCTTTGTTCTCTGAATCTCTTTGATTTGTTCTAATCCGGTTCGAGCTTATTTCTGACCTTACTTCTCTACTGTTGCTCCTATTCAAATATGGACAGATTCTAGCAATATGGCAATTGAGAGTAAAGCTCAAAAGTTGCACGAGGTGGAAAACCAAGCCGATCTGCGTGGAGCCCAAGGAAGCCAGATGTCTTCTTCTAGTTTGACTGCTGTAAAACAAGAAAGGGATCACACACCATTTCCAATTCAGGGACTTAACAGACAACAGCAACAACATTTACACTTCTCACAGGCATCTTTTCCCACATTTGCAAATGCAGGGAACAATTACAGTGCATATTCTGCATCTAATGTCAACTCTTCAACAACACAACCTCTTAAACAGCAATCTGATGATGCACAAATGAGACAAATTTCAGTTCAACAGAACAGAAATGCAACTCAGTTTG</genome_strand>
        <mrna_strand>AGAATCTGCAACTGGGTCGAGCAGCCAAGCAGCAATGAATTTAGCTAAACAGGGAAAACAAGTTCCTTTTGCCATGCTTTTCCCTCACATACAACCCCAACTTGATAAGGACAGGGCAGCGCAACTCCAGACACTTTACGTTAAACTCAAAGTAATGTTATAGCTGACTTTTTTGTGCTCATTTTGCCTTTTCTGTTATGTTAGTTTTGTCAACAATTGGAATGTGTATACAGAAAAATGAAATTTCCAAGGAAAGTTTTGTAAGGAACATGAGAAGTATAATTGGTGACCAGATGCTCAAAATGGCTGTATATAAATTTCAATCTCAG......................................................................................GCATCGAAAAACTCACAGTCTGTTCCCGGTCAATTTCCTCAGTCTCAGGCTTCACAGCAGCAACATTCGCTTATGCCAGCCGATG...................................................................................................ATTCTAGCAATATGGCAATTGAGAGTAAAGCTCAAAAGTTGCACGAGGTGGAAAGCCAAGCCGATCTGCGTGGAGCCCAAGGAAGCCAGATGCCTTCTTCTAGTTTAACTGCTGTAAAACAAGAAAGGGATCACACACCATTTCCAATTCAGGGACTTAACAGACAACTGCAACAACATTTACACTTCTCGCAGGTATCTTTTNCCACATTTGCAAATGCAGGGAACAATTACAGTGCATATTCTGCATCTAATGTCAACTCTTCAACAACACAACCTCTTAAACAGCAATCTGATGATGCACAAATGAGAC-AATTTCAGTTCAACAGAAACAGAATGCAACTCAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407130" ref_strand="+" ref_description="SGN-E407130 [PPI-6-G23]">
      <seq>agaatctgcacctgggtcgagcagccaagcagcaatgaatttagctaaacagggaaaacaagttccttttgccatgcttttccctcacatacaaccccaacttgataaggacagggcagcgcaactccagacactttacgttaaactcaaagtaatgttatagctgacttttttgtgctcattttgccttttctgttatgttagttttgtcaacaattggaatgtgtatacagaaaaatgaaatttccaaggaaagttttgtaaggaacatgagaagtataattggtgaccagatgctcaaaatggctgtatataaatttcaatctcaggcatcgaaaaactcacagtctgttcccggtcaatttcctcagtctcaggcttcacagcagcaacattcgcttatgccagccgatgattctagcaatatggcaattgagagtaaagctcaaaagttgcacgaggtggaaagccaatccgatctgcgtggagcccaatgaagccagatgccttcttctagtttaactgctgtaaaacaagaaagggatcacacaccatttccaattcacggacttaacagacaactgcaacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="36971" stop="38347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37271" g_stop="37599" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37600" i_stop="37685" i_length="86">
            <donor d_prob="0.708" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37686" g_stop="37770" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="414" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37771" i_stop="37869" i_length="99">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37870" g_stop="38047" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="592" r_length="178" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E407130" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37271" e_stop="37599"/>
          <exon e_start="37686" e_stop="37770"/>
          <exon e_start="37870" e_stop="38047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCTGCAACTGGGTCGATCAGCCAAGCAGCAATGAATATAGCTAAACAGGGAAAACAAGTTCCTTTTGCGATGCTTTTCCCTCACATACAACCCCAACTTGATAAGGACAGGGCAGCGCAGCTCCAGACACTTTACGTTAAACTCAAAGTAATGTTATAGCTGACTTTTTTGTGCTCATTTTGCCTTCTCTGTTATGTTAGTTTTGTCATCAATTGGAAAATGTATACAGAAAAATGAAATTTCCAAGGAAAGTTTTGTAAGGAACATGAGAAGTATAATTGGTGACCAGATGCTCAAAATGGCTGTATATAAATTTCAATCTCAGGTAGATGAAGCAGCACTTTCAGTTGTTACATCAGTAATGAAATTCTCAATCATTGTGTATTAACTCTATATGAAAGTTTAATTCAGGCATCGAAAAACTCACAGTCCGTTCCCGGTCAATTTCCTCAGTCTCAGGCTTCACAGCAGCAACATTCGCTTATGCCAGCCGATGGTACCTTTGTTCTCTGAATCTCTTTGATTTGTTCTAATCCGGTTCGAGCTTATTTCTGACCTTACTTCTCTACTGTTGCTCCTATTCAAATATGGACAGATTCTAGCAATATGGCAATTGAGAGTAAAGCTCAAAAGTTGCACGAGGTGGAAAACCAAGCCGATCTGCGTGGAGCCCAAGGAAGCCAGATGTCTTCTTCTAGTTTGACTGCTGTAAAACAAGAAAGGGATCACACACCATTTCCAATTCAGGGACTTAACAGACAACAGCAACAACA</genome_strand>
        <mrna_strand>AGAATCTGCACCTGGGTCGAGCAGCCAAGCAGCAATGAATTTAGCTAAACAGGGAAAACAAGTTCCTTTTGCCATGCTTTTCCCTCACATACAACCCCAACTTGATAAGGACAGGGCAGCGCAACTCCAGACACTTTACGTTAAACTCAAAGTAATGTTATAGCTGACTTTTTTGTGCTCATTTTGCCTTTTCTGTTATGTTAGTTTTGTCAACAATTGGAATGTGTATACAGAAAAATGAAATTTCCAAGGAAAGTTTTGTAAGGAACATGAGAAGTATAATTGGTGACCAGATGCTCAAAATGGCTGTATATAAATTTCAATCTCAG......................................................................................GCATCGAAAAACTCACAGTCTGTTCCCGGTCAATTTCCTCAGTCTCAGGCTTCACAGCAGCAACATTCGCTTATGCCAGCCGATG...................................................................................................ATTCTAGCAATATGGCAATTGAGAGTAAAGCTCAAAAGTTGCACGAGGTGGAAAGCCAATCCGATCTGCGTGGAGCCCAATGAAGCCAGATGCCTTCTTCTAGTTTAACTGCTGTAAAACAAGAAAGGGATCACACACCATTTCCAATTCACGGACTTAACAGACAACTGCAACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407282" ref_strand="+" ref_description="SGN-E407282 [PPI-6-H23]">
      <seq>agaatctgcaactgggtcgagcagccaagcagcaatgaatttagctaaacagggaaaacaagttccttttgccatgcttttccctcacatacaaccccaacttgataaggacagggcagcgcaactccagacactttacgttaaactcaaagtaatgttatagctgacttttttgtgctcattttgccttttctgttatgttagttttgtcaacaattggaatgtgtatacagaaaaatgaaatttccaaggaaagttttgtaaggaacatgagaagtataattggtgaccagatgctcaaaatggctgtatataaatttcaatctcaggcatcgaaaaactcacagtctgttcccggtcaatttcctcagtctcaggcttcacagcagcaacattcgcttatgccagccgatgattctagcaatatggcaattgagagtaaagctcanaagttgcacgaagtggaaagccaagccgatctgcgtggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="36971" stop="38246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37271" g_stop="37599" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37600" i_stop="37685" i_length="86">
            <donor d_prob="0.708" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37686" g_stop="37770" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="414" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37771" i_stop="37869" i_length="99">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37870" g_stop="37946" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="491" r_length="77" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E407282" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37271" e_stop="37599"/>
          <exon e_start="37686" e_stop="37770"/>
          <exon e_start="37870" e_stop="37946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCTGCAACTGGGTCGATCAGCCAAGCAGCAATGAATATAGCTAAACAGGGAAAACAAGTTCCTTTTGCGATGCTTTTCCCTCACATACAACCCCAACTTGATAAGGACAGGGCAGCGCAGCTCCAGACACTTTACGTTAAACTCAAAGTAATGTTATAGCTGACTTTTTTGTGCTCATTTTGCCTTCTCTGTTATGTTAGTTTTGTCATCAATTGGAAAATGTATACAGAAAAATGAAATTTCCAAGGAAAGTTTTGTAAGGAACATGAGAAGTATAATTGGTGACCAGATGCTCAAAATGGCTGTATATAAATTTCAATCTCAGGTAGATGAAGCAGCACTTTCAGTTGTTACATCAGTAATGAAATTCTCAATCATTGTGTATTAACTCTATATGAAAGTTTAATTCAGGCATCGAAAAACTCACAGTCCGTTCCCGGTCAATTTCCTCAGTCTCAGGCTTCACAGCAGCAACATTCGCTTATGCCAGCCGATGGTACCTTTGTTCTCTGAATCTCTTTGATTTGTTCTAATCCGGTTCGAGCTTATTTCTGACCTTACTTCTCTACTGTTGCTCCTATTCAAATATGGACAGATTCTAGCAATATGGCAATTGAGAGTAAAGCTCAAAAGTTGCACGAGGTGGAAAACCAAGCCGATCTGCGTGGAGCC</genome_strand>
        <mrna_strand>AGAATCTGCAACTGGGTCGAGCAGCCAAGCAGCAATGAATTTAGCTAAACAGGGAAAACAAGTTCCTTTTGCCATGCTTTTCCCTCACATACAACCCCAACTTGATAAGGACAGGGCAGCGCAACTCCAGACACTTTACGTTAAACTCAAAGTAATGTTATAGCTGACTTTTTTGTGCTCATTTTGCCTTTTCTGTTATGTTAGTTTTGTCAACAATTGGAATGTGTATACAGAAAAATGAAATTTCCAAGGAAAGTTTTGTAAGGAACATGAGAAGTATAATTGGTGACCAGATGCTCAAAATGGCTGTATATAAATTTCAATCTCAG......................................................................................GCATCGAAAAACTCACAGTCTGTTCCCGGTCAATTTCCTCAGTCTCAGGCTTCACAGCAGCAACATTCGCTTATGCCAGCCGATG...................................................................................................ATTCTAGCAATATGGCAATTGAGAGTAAAGCTCANAAGTTGCACGAAGTGGAAAGCCAAGCCGATCTGCGTGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486444" ref_strand="+" ref_description="SGN-E486444 [cSTE-22-M15]">
      <seq>cgaggtggaaaaccaagccgatctgcgtggagcccaaggaagccagatgccttcttctggtttgacttctgtaaaacaagaaagggatcacacaccatttccaattcagggacttaacagacaacagcaacaacatttacacttctcacaggcatcttttcccacatttgcaaatgcagggaacaattacagtgcatattctgcatctaatgtcaactcttcaactacacaacctcttaaacagcaatctgatgatgcacaaatgagacaaatttcagttcaacagaacagaaatgcaactcagtttggagtgccaacacaggccatgggaataatgagtgcccctaagtttgaaaagcaaaacacttttggcgaagccaaaagattacctggtgggggtcttaatatttcaagtacttcaagaatccagcagacctcagttcagtggaaaccctctgccaataaagagcagaaaagtattctttcatcaccaatgaccaatccaaagcctgaaccaattgatcatttccatgaccagctacatagatcccagttatcgcccttctcctctgttcaagtggatcaaggaaattccacttcggaaagttcaagggatgaatctattgaacagatctccagaattggtttatcatcaacgactagcatgaaacccttcaattcagcctcgtcttccatgtcatctcatatggacactagcacgttgttaacttctcggacactttctgtgacatctccgcttgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="37613" stop="42239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37913" g_stop="38636" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38637" i_stop="41898" i_length="3262">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41899" g_stop="41939" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="765" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E486444" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37913" e_stop="38636"/>
          <exon e_start="41899" e_stop="41939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGTGGAAAACCAAGCCGATCTGCGTGGAGCCCAAGGAAGCCAGATGTCTTCTTCTAGTTTGACTGCTGTAAAACAAGAAAGGGATCACACACCATTTCCAATTCAGGGACTTAACAGACAACAGCAACAACATTTACACTTCTCACAGGCATCTTTTCCCACATTTGCAAATGCAGGGAACAATTACAGTGCATATTCTGCATCTAATGTCAACTCTTCAACAACACAACCTCTTAAACAGCAATCTGATGATGCACAAATGAGACAAATTTCAGTTCAACAGAACAGAAATGCAACTCAGTTTGGAGTGCCAGCACAAGCCATGGGAATAATGAGTGCCCCTAAGTTTGAAAAGCAAAACACTTTTGGCGAAGCCAAAAGATTACCTGGTGGGGGTCTTAATATGTCAAGTACTTCAAGAATCCAGCAGACCTCAGTGCAGTGGCAACCCTCTGCCAATAAAGAGCAGAAAAGCATTCTTTCATCACCAATGACCAATCCAAAGCCTGAACCAATTGATCATTTCCATGACCAGCTACAAAGATCCCAGTTATCGCCCTTCTCCTCTGTTCAAGTGGATCAAGGAAATTCCACTTCGGAAAGTTCAAGGGATGAATCTATTGAACAGACCTCCAGAATTGGTTTATCATCAACGACTAGCATGAAACCTTCAAATTCAGCCTCGTCTTCCATGTCATCTCATATGGACACTAGCACATTGGTAATTTTCTTGGTTTGCAACTTTTCATCCTGACTTGATTTATTGACTTCTGAAGTGAGGATATATCATATATTGTAGAAGTATAAGAGCATGTCTTTTTATACATGCATGCATACGTACATACATATATGTATTTATATTTATACATAGATATATTTCTAGAAATGCATTTTTTTTAAAAAAAAAATCTGTGTCAGTATTTTTTGGCTGACTTTTCCCCCTCTGCTCTATGAATTGACTGTTTCATTATTGAACTATAACTTATGAAACTCCTCTAGAAAAGAAATTTGAAAAGCTTGTCGATGTGAGAACTCTCTATGTTTTACAGAAAAGCTGCTCATGTCACTACCCAAGATTATGAATGTACTGTCTACTTTGGCCCTACGGACCTCAGGGATTCGTCCCTATGACTACACCTTCAGGAAAAGGAGAAGGGAAAAATGGAGAGGGTAGAGTTCACTTTTTGCTTTTGAATTGATTTTACGGAGTGATAGGAAGGGAGAAGGGAAGAGAGGGAGGAATAAGGTTATGAACAAGTGATAAAGTTTATATCTGTCCAAAAGTGAGCAGAAAATGAGAGAAGCTGACCTCTTTTAATGAGAATCCTTTAGTGCCAAAAAAAAAAAAATACAATCTTACTAACAGTTGAAATACTTCATTAAGGGCTGGCATCAAGTAACAACAATCCATTTTTCTCCCTCATTATTTATCCAATATCTTATAAAATCCCTCTTTCAGCTCTCCTTCTTTCTTCCACATGGTCTTCCTTTCTATCTTATTCTTTCTTTCAATCCAAAACATTTGTAAAAAGACAGATCTCTATCACTTTGAAGCAATTGTTGACTTGTTTATTCTTTTGCTAAATTTGGTTTTCAATCTTGCATTCATTTTCTCTAACTTTGAGCCTGTTTGGATTGGCTTATGTTAGGTGTTTTTAAGCCTAAATAACTTTTATGCAGTTTTTGTAGTGTTTGGATAAAACAAAAAAGTGCTTTTAAGCCAAAAACAAAAATAAGCCAAAATCCATTAGTTAGAAATTCTTTTTTTTTTTTACACTAATAACATTGTATTTCAGTCAGTACATAGGTAGTACTGAAAAACCATATTTACAAAAACAAGAAAAAGATTAAAGTCCTTCCAATGCTAAACCAGGAACTAGATGGACCCTAAACCATGTATGATTGACTCAGTCTCGTTGGAGTAGACATTGTACACCAAAAACAGAACAACAAAATATATTTAAGCTTGACTTCCTGAAGGTTGTTTTCCCTATTTCCAGAACATCTATCATTTCTCTCTCTCCATATAGTCCACCATATACAAGCAGGTATTATCCTCTATCTTTCTGTTTATGCCCCAACTCCAGCTTCCTCCCAACTCCCAACTGAAGAGTCTCAGCAATCTTACTAGGCACACTCCAGGAAATGCCTCTGAGATTAAGGAAAATCTGTCACAGTTTAACAGTGAAATTGCAGTGTAGAAAGAGGTGTTTTACAGTCTCTGTATCCTTACCACATAAGGAGCATCTGTTGCATAGATATGTACCTCTCTTGGCCACATTGTCCAATGTCAGAACTGCTTCATTGGCTAGCCAGGTGAAGCATGCCACTTTTTGTGGCACTTAGTTATAAATTCTAACTTATGACATTTGGCTTATAAGCCCATCCAAACAGGCTCCTAATCCACTTTATCCTTATTATTTTTGGTAACTTAAATAATTCTTATTTCTGTTCTTATAACTTTTTAGAGCCGTGTTACCGCCATAACAGCTTGGTCTTACATTTGTTCATCAACACGATATCATGGAACTCATTCCTACCTTCAAGAATGGACAAACACTTTCTAATCATTTTATCATAATGGAACTAAAAACAAAAGCATTACTTTGAAAAACTGTTCAAATCTTAACTTGTAGTAAGTATTTTATCTTCCATCTCAAAATGATGAGGAAATAGCTTTGAAGAGAGCTGCAATATGGTAGTACAGGTTGATGCCATTAAGTCCACTTTAACATATTTCAGAATTTGTAATATGTATTCTTCAAGTTAACAAGGAGGGAAGCAATCGTTTTATGCTATTACATTTAACAAAGATAAATACATTTCATCATTTTTTATCTTTAGGATAATGGACTCTATGGTAGAAACCCGACCTGAACTGTTAGTTGTTCTTCTATAGGAGTATTTTCTCTCTTTCTGTTTTTTGAAAGAAAACCAATGGCATTTAAACAGAAATATACGACTGGTTAAAGTAGAAAGTACAGATTTTTTCCCACAAAGCCCTCACTGCAGAGGGTCAAAGTGAACGCAGAAAGTTTTTGGCAACATGAGATCTGTTTCTGGCAGCACTTTGGTAGTCATCGTATATCTTATTTCTCACTTACAATATTTTTGATTGCATGTCTCTTGAGCTTGCTAAAATATTTATATTTTGTCTTGCATTCAGTGTTCTCAAAAATGTTTTTGGGGTGAGTCGGGTGCGGCGTACCAAAAACACTCCGGGTCGCAAATTGAAGGCGTTACATCAATAGGGCGTAAATCCTAAAATTTTGGGGCATAAGTCTCGAGCATAAAAACCTAAATCCTAGGTGTTAAACATACGCCCCAAGCGTTATTTTTTTTAAAACCGTTTTTGTTTAAATCATATATTTTATGTTTGCTGTGATGATACTTATATTTTATGCTATCGTGTTTTATCATGTTGTAGTGATTTTTGCTAAAATGGATAAATAAACTCTCATAGAAAATGACATTATTGTAAATAGTTTTTTAGATAATTGTGTCTGAAATTGATAGGATATAGCTTTCATAGCACTATGTTCCTGAGACAACTTTATTCATTTTTTTAATTTCTTCTACACTCTTTATCCTTTTCTTCTTTAAGATATATAAATAATAATCCGTGCGAATATTAATTGAGAGTGTAAGGACTAGTAAATGTGAAGATGGACGATAATTTCATTTTAAAGATTATTTTTCCCTATACTATTGGCTATTTATTAAAACTTATTTGTAAAATAAAATTTTACTTGCTTATAAAATTAAAAAATTAAATATACATGAGATGTACGTCCGTTAGATCAATGGGACTTGCGCCCTGTGTTTCGGGGCTTATGTCGCACGCCCCATGCTGCATAAAATTCCTCGCCTCGCGCTCACGCCTTTTATAACACTCCTTGCATTATTTCTTATGTTTGAAGTTGTGGATTATAGATGCATGCTTCTCACTGTCACTTTTCTTATTTCACTTTTTGTTACTTCAGTTAACTTCTCGGACACTTTCTGTGACATCTCCGCTTGGGCT</genome_strand>
        <mrna_strand>CGAGGTGGAAAACCAAGCCGATCTGCGTGGAGCCCAAGGAAGCCAGATGCCTTCTTCTGGTTTGACTTCTGTAAAACAAGAAAGGGATCACACACCATTTCCAATTCAGGGACTTAACAGACAACAGCAACAACATTTACACTTCTCACAGGCATCTTTTCCCACATTTGCAAATGCAGGGAACAATTACAGTGCATATTCTGCATCTAATGTCAACTCTTCAACTACACAACCTCTTAAACAGCAATCTGATGATGCACAAATGAGACAAATTTCAGTTCAACAGAACAGAAATGCAACTCAGTTTGGAGTGCCAACACAGGCCATGGGAATAATGAGTGCCCCTAAGTTTGAAAAGCAAAACACTTTTGGCGAAGCCAAAAGATTACCTGGTGGGGGTCTTAATATTTCAAGTACTTCAAGAATCCAGCAGACCTCAGTTCAGTGGAAACCCTCTGCCAATAAAGAGCAGAAAAGTATTCTTTCATCACCAATGACCAATCCAAAGCCTGAACCAATTGATCATTTCCATGACCAGCTACATAGATCCCAGTTATCGCCCTTCTCCTCTGTTCAAGTGGATCAAGGAAATTCCACTTCGGAAAGTTCAAGGGATGAATCTATTGAACAGATCTCCAGAATTGGTTTATCATCAACGACTAGCATGAAACCCTTCAATTCAGCCTCGTCTTCCATGTCATCTCATATGGACACTAGCACGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTTCTCGGACACTTTCTGTGACATCTCCGCTTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454629" ref_strand="+" ref_description="SGN-E454629 [cSTS-23-L22]">
      <seq>caaagatcccagttatcgcccttctcctctgttcaagtggatcaaggaaattccacttcggaaagttcaagggatgaatctattgaacagacctccagaattggtttatcatcaacgactagcatgaaaccttcaaattcagcctcgtcttccatgtcatctcatatggacactagcacattgttaagttctcggacactttctgtgacatctccacttgggccaggaaacaatggaaagactcctgtgaaaaagccttccattggacagaagaagccccttgatgcgctaggttcctcacctccaccttcgggaaagaagcaaaaggtgtcgggaggttttttagatcagagcattgaacaacttaatgatgttactgctgttagtggagttaatctaagggaagaggaagagcaactattttctgggcccaaggaggacagtcgagtttctgaagcatctcgtcgagttgtgcaagaagaagaggaaaggctgattttgcagaaaattccacttcagaagaaattgacagaaatcatggcaaaatgtggtttaaagaatatgagcagtgatgtggaacgatgcttgtcgttgtgtgtggaggaaagaatgcgtggactcataagtagtctcatcagactgtcaaaacagagagttgacattgagaagtcaagacacagaacaattgtcacctcagaatgttcgtgaagaaatcatgtcaatcaatcgaaaagcccggggagaaatgggaaaagaacaggctgatgtggaaaaactccaaaaggcaaatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="38154" stop="43331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38454" g_stop="38636" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38637" i_stop="41898" i_length="3262">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41899" g_stop="42029" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="314" r_length="131" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42030" i_stop="42140" i_length="111">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42141" g_stop="42228" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="402" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42229" i_stop="42349" i_length="121">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42350" g_stop="42485" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="538" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42486" i_stop="42614" i_length="129">
            <donor d_prob="0.874" d_score="0.98"/>
            <acceptor a_prob="0.908" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42615" g_stop="42670" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="594" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42671" i_stop="42754" i_length="84">
            <donor d_prob="0.386" d_score="0.94"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42755" g_stop="42811" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="651" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42812" i_stop="42890" i_length="79">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42891" g_stop="43031" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="793" r_length="142" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E454629" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38454" e_stop="38636"/>
          <exon e_start="41899" e_stop="42029"/>
          <exon e_start="42141" e_stop="42228"/>
          <exon e_start="42350" e_stop="42485"/>
          <exon e_start="42615" e_stop="42670"/>
          <exon e_start="42755" e_stop="42811"/>
          <exon e_start="42891" e_stop="43031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATCCCAGTTATCGCCCTTCTCCTCTGTTCAAGTGGATCAAGGAAATTCCACTTCGGAAAGTTCAAGGGATGAATCTATTGAACAGACCTCCAGAATTGGTTTATCATCAACGACTAGCATGAAACCTTCAAATTCAGCCTCGTCTTCCATGTCATCTCATATGGACACTAGCACATTGGTAATTTTCTTGGTTTGCAACTTTTCATCCTGACTTGATTTATTGACTTCTGAAGTGAGGATATATCATATATTGTAGAAGTATAAGAGCATGTCTTTTTATACATGCATGCATACGTACATACATATATGTATTTATATTTATACATAGATATATTTCTAGAAATGCATTTTTTTTAAAAAAAAAATCTGTGTCAGTATTTTTTGGCTGACTTTTCCCCCTCTGCTCTATGAATTGACTGTTTCATTATTGAACTATAACTTATGAAACTCCTCTAGAAAAGAAATTTGAAAAGCTTGTCGATGTGAGAACTCTCTATGTTTTACAGAAAAGCTGCTCATGTCACTACCCAAGATTATGAATGTACTGTCTACTTTGGCCCTACGGACCTCAGGGATTCGTCCCTATGACTACACCTTCAGGAAAAGGAGAAGGGAAAAATGGAGAGGGTAGAGTTCACTTTTTGCTTTTGAATTGATTTTACGGAGTGATAGGAAGGGAGAAGGGAAGAGAGGGAGGAATAAGGTTATGAACAAGTGATAAAGTTTATATCTGTCCAAAAGTGAGCAGAAAATGAGAGAAGCTGACCTCTTTTAATGAGAATCCTTTAGTGCCAAAAAAAAAAAAATACAATCTTACTAACAGTTGAAATACTTCATTAAGGGCTGGCATCAAGTAACAACAATCCATTTTTCTCCCTCATTATTTATCCAATATCTTATAAAATCCCTCTTTCAGCTCTCCTTCTTTCTTCCACATGGTCTTCCTTTCTATCTTATTCTTTCTTTCAATCCAAAACATTTGTAAAAAGACAGATCTCTATCACTTTGAAGCAATTGTTGACTTGTTTATTCTTTTGCTAAATTTGGTTTTCAATCTTGCATTCATTTTCTCTAACTTTGAGCCTGTTTGGATTGGCTTATGTTAGGTGTTTTTAAGCCTAAATAACTTTTATGCAGTTTTTGTAGTGTTTGGATAAAACAAAAAAGTGCTTTTAAGCCAAAAACAAAAATAAGCCAAAATCCATTAGTTAGAAATTCTTTTTTTTTTTTACACTAATAACATTGTATTTCAGTCAGTACATAGGTAGTACTGAAAAACCATATTTACAAAAACAAGAAAAAGATTAAAGTCCTTCCAATGCTAAACCAGGAACTAGATGGACCCTAAACCATGTATGATTGACTCAGTCTCGTTGGAGTAGACATTGTACACCAAAAACAGAACAACAAAATATATTTAAGCTTGACTTCCTGAAGGTTGTTTTCCCTATTTCCAGAACATCTATCATTTCTCTCTCTCCATATAGTCCACCATATACAAGCAGGTATTATCCTCTATCTTTCTGTTTATGCCCCAACTCCAGCTTCCTCCCAACTCCCAACTGAAGAGTCTCAGCAATCTTACTAGGCACACTCCAGGAAATGCCTCTGAGATTAAGGAAAATCTGTCACAGTTTAACAGTGAAATTGCAGTGTAGAAAGAGGTGTTTTACAGTCTCTGTATCCTTACCACATAAGGAGCATCTGTTGCATAGATATGTACCTCTCTTGGCCACATTGTCCAATGTCAGAACTGCTTCATTGGCTAGCCAGGTGAAGCATGCCACTTTTTGTGGCACTTAGTTATAAATTCTAACTTATGACATTTGGCTTATAAGCCCATCCAAACAGGCTCCTAATCCACTTTATCCTTATTATTTTTGGTAACTTAAATAATTCTTATTTCTGTTCTTATAACTTTTTAGAGCCGTGTTACCGCCATAACAGCTTGGTCTTACATTTGTTCATCAACACGATATCATGGAACTCATTCCTACCTTCAAGAATGGACAAACACTTTCTAATCATTTTATCATAATGGAACTAAAAACAAAAGCATTACTTTGAAAAACTGTTCAAATCTTAACTTGTAGTAAGTATTTTATCTTCCATCTCAAAATGATGAGGAAATAGCTTTGAAGAGAGCTGCAATATGGTAGTACAGGTTGATGCCATTAAGTCCACTTTAACATATTTCAGAATTTGTAATATGTATTCTTCAAGTTAACAAGGAGGGAAGCAATCGTTTTATGCTATTACATTTAACAAAGATAAATACATTTCATCATTTTTTATCTTTAGGATAATGGACTCTATGGTAGAAACCCGACCTGAACTGTTAGTTGTTCTTCTATAGGAGTATTTTCTCTCTTTCTGTTTTTTGAAAGAAAACCAATGGCATTTAAACAGAAATATACGACTGGTTAAAGTAGAAAGTACAGATTTTTTCCCACAAAGCCCTCACTGCAGAGGGTCAAAGTGAACGCAGAAAGTTTTTGGCAACATGAGATCTGTTTCTGGCAGCACTTTGGTAGTCATCGTATATCTTATTTCTCACTTACAATATTTTTGATTGCATGTCTCTTGAGCTTGCTAAAATATTTATATTTTGTCTTGCATTCAGTGTTCTCAAAAATGTTTTTGGGGTGAGTCGGGTGCGGCGTACCAAAAACACTCCGGGTCGCAAATTGAAGGCGTTACATCAATAGGGCGTAAATCCTAAAATTTTGGGGCATAAGTCTCGAGCATAAAAACCTAAATCCTAGGTGTTAAACATACGCCCCAAGCGTTATTTTTTTTAAAACCGTTTTTGTTTAAATCATATATTTTATGTTTGCTGTGATGATACTTATATTTTATGCTATCGTGTTTTATCATGTTGTAGTGATTTTTGCTAAAATGGATAAATAAACTCTCATAGAAAATGACATTATTGTAAATAGTTTTTTAGATAATTGTGTCTGAAATTGATAGGATATAGCTTTCATAGCACTATGTTCCTGAGACAACTTTATTCATTTTTTTAATTTCTTCTACACTCTTTATCCTTTTCTTCTTTAAGATATATAAATAATAATCCGTGCGAATATTAATTGAGAGTGTAAGGACTAGTAAATGTGAAGATGGACGATAATTTCATTTTAAAGATTATTTTTCCCTATACTATTGGCTATTTATTAAAACTTATTTGTAAAATAAAATTTTACTTGCTTATAAAATTAAAAAATTAAATATACATGAGATGTACGTCCGTTAGATCAATGGGACTTGCGCCCTGTGTTTCGGGGCTTATGTCGCACGCCCCATGCTGCATAAAATTCCTCGCCTCGCGCTCACGCCTTTTATAACACTCCTTGCATTATTTCTTATGTTTGAAGTTGTGGATTATAGATGCATGCTTCTCACTGTCACTTTTCTTATTTCACTTTTTGTTACTTCAGTTAACTTCTCGGACACTTTCTGTGACATCTCCGCTTGGGCTAGGAAACAACGGAAAGACTCCTGTGAAAAAGCCTTCCATTGGACAGAAGAAGCCCCTTGATGCGCTAGGTTCCTCACCTCCACCTTCGGGGTACACTATTCTGAGCACCTTTACTATGATATTTTGCTGGTATAGTGTCTCAATATTTTGTGTGTTGTATTGATTCCATTTTGTATTGTTTTATCCCTTCACATTTCACAGAAAGAAGCAAAAGGTGTCGGGAGGTTTCCTAGATCAGAGCATTGAACAACTTAATGATGTTACTGCTGTTAGTGGGGTTAATCTAAGGGTAATACCTTCTTCGATGCCCAACAGTGGAATGTATATTGTGCTCATCATTAGTTGTTTAAAGCATTTAATCAGAAGTATTGGGAAGTAGTTTGATATTTTTTTGTAATGCATAAAAACAGGAAGAGGAAGAGCAACTATTTTCTGGGCCCAAGGAGGACAGTCGAGTTTCTGAAGCATCTCGTCGAGTTGTGCAAGAAGAAGAGGAAAGGTTGATTTTGCAGAAAATTCCACTTCAGAAGAAATTGACAGAAATCAGTTAAATCCCTTTTTTAGATCTTCCCTTTGTTTTTGATGTGCAACTTGTTATTATATAATACATGATAGAGTATGTCAGCTTCCTAACTAAATTGCATGTTTTCTTGCTTACCTGATACTGTCTGACAGTGGCAAAATGTGGTTTAAAGAGTATGAGCAGTGATGTCGAACGGTGCTTGTCGTTGGTGAGATATGATCTTTTTCTGTTTGTTTGACTCTTCTTTTTGGGAGATTCTTGTGCCACTGAACTTTGAACTTTCAACTTCCAGTGTGTGGAGGAAAGAATGCGTGGACTCATAAGTAGTCTCATCAGACTGTCAAAACAGGTTAATATTTTGCTTGGTCTCTGTGAAAAGCTTATAGTATTCTTCTTATGAACCTGAGATAGAGGTCTTCTTTCTGTAGAGAGTTGACATTGAGAAGTCAAGACACAGAACAATTGTCACCTCAG-ATGTTCGTGAAGAAATCATGTCAATCAATCGAAAAGCCCGGGAAG-AATGGGAAAGGAAACAAGCTGATGTGGAGAAACTCCAAAAGGCAAATGAA</genome_strand>
        <mrna_strand>CAAAGATCCCAGTTATCGCCCTTCTCCTCTGTTCAAGTGGATCAAGGAAATTCCACTTCGGAAAGTTCAAGGGATGAATCTATTGAACAGACCTCCAGAATTGGTTTATCATCAACGACTAGCATGAAACCTTCAAATTCAGCCTCGTCTTCCATGTCATCTCATATGGACACTAGCACATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGTTCTCGGACACTTTCTGTGACATCTCCACTTGGGCCAGGAAACAATGGAAAGACTCCTGTGAAAAAGCCTTCCATTGGACAGAAGAAGCCCCTTGATGCGCTAGGTTCCTCACCTCCACCTTCGGG...............................................................................................................AAAGAAGCAAAAGGTGTCGGGAGGTTTTTTAGATCAGAGCATTGAACAACTTAATGATGTTACTGCTGTTAGTGGAGTTAATCTAAGG.........................................................................................................................GAAGAGGAAGAGCAACTATTTTCTGGGCCCAAGGAGGACAGTCGAGTTTCTGAAGCATCTCGTCGAGTTGTGCAAGAAGAAGAGGAAAGGCTGATTTTGCAGAAAATTCCACTTCAGAAGAAATTGACAGAAATCA.................................................................................................................................TGGCAAAATGTGGTTTAAAGAATATGAGCAGTGATGTGGAACGATGCTTGTCGTTG....................................................................................TGTGTGGAGGAAAGAATGCGTGGACTCATAAGTAGTCTCATCAGACTGTCAAAACAG...............................................................................AGAGTTGACATTGAGAAGTCAAGACACAGAACAATTGTCACCTCAGAATGTTCGTGAAGAAATCATGTCAATCAATCGAAAAGCCCGGGGAGAAATGGGAAAAG-AACAGGCTGATGTGGAAAAACTCCAAAAGGCAAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271618" ref_strand="+" ref_description="SGN-E271618 [cLEM-23-P14]">
      <seq>tttcctacatcagagcattggacaacttaaggacgttactgctgatatatggggttaatctcagggaagaggaaaatcaactattttctgggcccaaggaggacagtcgagtttctgaagcatctcgtcgagttgtgcaagaagaagaggaaaggttgattttgcataaaattccacttcaaaagaaattgacagaaatcatggcaaaatgtggtttaaagagtatgagcagtgatgtcgaacggtgcttgtcgttgtgtgtggaggaaagaatgcgtggactcataagtagtctcatcagactgtctaaacagagagttgacattgagaagtcaagacacagaacaattgtcacctcacatgttcgtgaagaaatcatgtcaatcaatcgaaaagcccgggaagaatgggaaaggaaacaagctgatgtggacaaactccaaaaggcaaatgaaccttgaagtagtactggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="42047" stop="43331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42165" g_stop="42228" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.859"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42229" i_stop="42349" i_length="121">
            <donor d_prob="0.959" d_score="0.84"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42350" g_stop="42485" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="201" r_length="136" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42486" i_stop="42614" i_length="129">
            <donor d_prob="0.874" d_score="0.96"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42615" g_stop="42670" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="257" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42671" i_stop="42754" i_length="84">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42755" g_stop="42811" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="314" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42812" i_stop="42890" i_length="79">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42891" g_stop="43031" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="455" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43032" i_stop="43166" i_length="135">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43167" g_stop="43186" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="475" r_length="20" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E271618" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42165" e_stop="42228"/>
          <exon e_start="42350" e_stop="42485"/>
          <exon e_start="42615" e_stop="42670"/>
          <exon e_start="42755" e_stop="42811"/>
          <exon e_start="42891" e_stop="43031"/>
          <exon e_start="43167" e_stop="43186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTAGATCAGAGCATTGAACAACTTAATGATGTTACTGCTGTTA-GTGGGGTTAATCTAAGGGTAATACCTTCTTCGATGCCCAACAGTGGAATGTATATTGTGCTCATCATTAGTTGTTTAAAGCATTTAATCAGAAGTATTGGGAAGTAGTTTGATATTTTTTTGTAATGCATAAAAACAGGAAGAGGAAGAGCAACTATTTTCTGGGCCCAAGGAGGACAGTCGAGTTTCTGAAGCATCTCGTCGAGTTGTGCAAGAAGAAGAGGAAAGGTTGATTTTGCAGAAAATTCCACTTCAGAAGAAATTGACAGAAATCAGTTAAATCCCTTTTTTAGATCTTCCCTTTGTTTTTGATGTGCAACTTGTTATTATATAATACATGATAGAGTATGTCAGCTTCCTAACTAAATTGCATGTTTTCTTGCTTACCTGATACTGTCTGACAGTGGCAAAATGTGGTTTAAAGAGTATGAGCAGTGATGTCGAACGGTGCTTGTCGTTGGTGAGATATGATCTTTTTCTGTTTGTTTGACTCTTCTTTTTGGGAGATTCTTGTGCCACTGAACTTTGAACTTTCAACTTCCAGTGTGTGGAGGAAAGAATGCGTGGACTCATAAGTAGTCTCATCAGACTGTCAAAACAGGTTAATATTTTGCTTGGTCTCTGTGAAAAGCTTATAGTATTCTTCTTATGAACCTGAGATAGAGGTCTTCTTTCTGTAGAGAGTTGACATTGAGAAGTCAAGACACAGAACAATTGTCACCTCAGATGTTCGTGAAGAAATCATGTCAATCAATCGAAAAGCCCGGGAAGAATGGGAAAGGAAACAAGCTGATGTGGAGAAACTCCAAAAGGCAAATGAAGTGAGTTATCTTTCTTTCCACTTTGAGCGTTCTTCAACTAAGTTTCTACTGGTCAATGTTCATATGGAATATTATGTTATCTGCTCCAAAAAATGACAATATGGAAAATTGTTAACTTAATGACTTGGATATCAGCCTGAAGGTAGTACTGGAGT</genome_strand>
        <mrna_strand>TTTCCTACATCAGAGCATTGGACAACTTAAGGACGTTACTGCTGATATATGGGGTTAATCTCAGG.........................................................................................................................GAAGAGGAAAATCAACTATTTTCTGGGCCCAAGGAGGACAGTCGAGTTTCTGAAGCATCTCGTCGAGTTGTGCAAGAAGAAGAGGAAAGGTTGATTTTGCATAAAATTCCACTTCAAAAGAAATTGACAGAAATCA.................................................................................................................................TGGCAAAATGTGGTTTAAAGAGTATGAGCAGTGATGTCGAACGGTGCTTGTCGTTG....................................................................................TGTGTGGAGGAAAGAATGCGTGGACTCATAAGTAGTCTCATCAGACTGTCTAAACAG...............................................................................AGAGTTGACATTGAGAAGTCAAGACACAGAACAATTGTCACCTCACATGTTCGTGAAGAAATCATGTCAATCAATCGAAAAGCCCGGGAAGAATGGGAAAGGAAACAAGCTGATGTGGACAAACTCCAAAAGGCAAATGAA.......................................................................................................................................CCTTGAAGTAGTACTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714065" ref_strand="+" ref_description="SGN-E714065 [FB10BF11]">
      <seq>aatttgtacaggaaatatcaaagaacaaactaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgatatatgctatagacttgtcgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannccggggggggggggggggacccctttccccccaaagggggggcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54358" stop="33668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54058" g_stop="53950" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="150" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51023" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="467" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51022" i_stop="49629" i_length="1394">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49628" g_stop="49592" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="504" r_length="37" r_score="0.649"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49591" i_stop="49464" i_length="128">
            <donor d_prob="0.049" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49463" g_stop="49446" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="522" r_length="18" r_score="0.611"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49445" i_stop="48920" i_length="526">
            <donor d_prob="0.591" d_score="0.00"/>
            <acceptor a_prob="0.797" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48919" g_stop="48908" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="534" r_length="12" r_score="0.667"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48907" i_stop="48204" i_length="704">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48203" g_stop="48182" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="556" r_length="22" r_score="0.591"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48181" i_stop="47569" i_length="613">
            <donor d_prob="0.323" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47568" g_stop="47540" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="585" r_length="29" r_score="0.586"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E714065" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54058" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51023"/>
          <exon e_start="49628" e_stop="49592"/>
          <exon e_start="49463" e_stop="49446"/>
          <exon e_start="48919" e_stop="48908"/>
          <exon e_start="48203" e_stop="48182"/>
          <exon e_start="47568" e_stop="47540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTTGTCGAGCGTAATGCTTTACCTTCTCAATGCCTGATTGAGTATTTACTATTGCTTGTTTTAAACATCCACCACCAAATATTTGGTGGGGTAGAAGGTATCGTTTGTCCTTGACTAGAGGTTTTGGGTTTGAGGTCTGAGAATCGAGTTGCTTTTCATAGGGAGTTTTATGCCCCAAAGTAGAACCTTTTCGGCACGATTCTATGTTAATCGGGGTTGGAAAGCGGGCACCAGACACTGATGGGAAACCCATAAAGGGTTCTAATCATTTAGATTGTGATGTGATAGCATTCAAGTCTATCATTGTGGTCTGACCTTATCTTCTATGTCTTATCTTCTTTTTAAGTCTTCATTGAGGAAGAGAAGAAATCACTGCTGTATTGTTTTGGAAAAAGATTATAGTAGGAATGCTGATTGTTGGAAATCAGAGGTTTAACTGCCCATGTTCAAAACTGGAATCGAAGTTAGGTGCGAAATTTAAGTACGCTCAATTGGTTGACTATCTATAATTTCCAAACTCTAACTACTTATTTGCTAGAATATGACGTATATTATGAAACAAAAACAATTTTGTAACAAATTTAGTAGGAGTAGACATGATTTTCCCCCCAACGGATTCAAATTCTAGTAGAAGTAAATACTATAGGTTATCTTTTCCATTTATTCTAGTTTTGATGGATAAAGTTAGTTGATATTTGTTGGAAGTGAGAAGCAACATGTATTCGGTGAAATTAATTAAAGTACGCGCAAGACAAATTGGACACCATTGTCCTAGGCTTCTGATTTTACTTAATTGGTAATCACATAAAGCAGACGATATTTTAGTCAATTTGCATCAAGATCAAACTTTCTTCTTGCGTCCCTCCCTCACACCCCCAACCCCACCCCCACCCCAAGAAGCACACACTATAATATGAGGTAAATTTTAATTGACAGCGTGTTCAATCAAACGGATGATTTTCTCTCCGATTACAAACCCCATACTAACCCTATAAACTGAAAATTCATAACCCCAATTGTTATTTTCTTAAGCATCTCTTTGTACGTATTTTCAACTTCTTATCTGAACCAATAACGTATACGTTTCAAAATTAGTGACATTGAACCCACTTTAATTTGTATAAACAAATACGTAATTGTCTTGTAATTTAAAAGAAAATATTCTTTTTCACGTAACAATTTCTTATTACTGAAAAAGGGAAAGAAATTTTTAAAATCATTTTAAGTGCTTAAATTGATTTTCTTGTACCATACTATACTGATTGTGATGAATGAAAACAACACTACAATCACGTTAGCAAACTAAACATGTCTCTAGTAAGTAAGTCACACTTTAATTCTTCCAAATGTGGATTATTTTATTTGTAAAAATATATTCCTTCATCCATAAAATAAAGGTTGAAAATGAAAACAAAAATTAAATGCTAACAATTAGCTAGCATACTTCTGTTCAATTATGTACTGTAAATATCTTTCTAAAAAACAATACTATTTGTATAAAAATGAGTCAGTACCATTTGATAATTATTCAGTGAATGACAATAATTTCAATCCTGAACCAGAAACGCAGGATACAAAAAGTTTGATAAGAAACTGACTAAACTAACGGAGTATAAGTATCTTTTACTTTCAATCTTAATATTATGAGTCCGAGTAATTAAAAAAAAACCGGAATCTCTAGGAAGAAAGGAGAGAAAAACTTCATAGGTCTCCAAGCAAAGGTTAACCATCTCATCAAAAATTAAACTTTATAATAAAAGCTTAACTTTATTTTTTAACTAACTCCGACTTAGACCCCTCGTGAGTCTTGCCATAAACAAAATGTTTGACATAACTCAAATTGTGTCGATAAAGGATATCATTATTCACACACAAAAAAAAATTGCATATGTAACTGCATGTTGCAACGCCTAATCAGTGACCATGAACTGCATGAGTATGGGCGGAGTTACAAAGGGGCACAAGTTTCATATACATTTGCTTTTTTGAATTTCGTGAAAATTCTGATTCTATCGCTGCTTCGAAAGGCAATATTATACAATTTTTTTAAAGTAAAAATCAGTTGCATGATAAGAGAAGTTAATCGGATGGTAATATTCTATTCAGAATAACAAAAAGGTCAAAGCTCGTAGCGAGAAAAAACCGATTGCACATATATTTTTATTTACATGCCTAAACTGCGATTCCGATGACTATTTTACACTGATTTTCCCCAAATTTTCGATCGTCATAAAGCCAAAAAAACAGATAGAAAAATTCGATCCAAAACAATTTACATACTTACAGTGAGTTAAAATCACTCGATTTTCACTTATCTTTACCGCTAGCGAGGGTGGTGCTGAGGAAGCCGGAACCGAAACTGCGACGCCGGAGATCTAACAGCAACGCCGTGCCAACATATACCACCTCTACACAACTCATCGGAATGATGACGTGGCTGATTCCGATTCAGAGTAAGATGACGATCGCGTGTCAAAGCACACCTAGTAACCTTACGTGACACATCCCACGTCAAACTCAAAATCAACACAGTACCTACAACAGCTGTTGACACAATCAGCACAAAAACTCCGCCGTAGCTCCGTCCTGTCATCAATCCGTACGCCTTCATTGCCGCTATCACTAACAGGTACAACGTCGTTAAATTCCCCACTACAGTATCCGAAATCGCCATTTTTATCGGTCTTCTAAGATCAAAATCAAGTTGAAATTTTGGTAAAATTTTAGTCTAAAGTAGGTAGTGAACTGATATTAGAGGGTTTTAAAAGGGTATTATGGTATGGAGTGAGAATTACGAAATTTTGGATTTTGGGTTGGGGTAGGGGGTGGTGGGTGGGGGGGGGTGTAAGATAATGCTATGGGTTCTGAGCTTATCTTCTTTTTATTTTCAGTATTTTGAGGAAAGGGAAAGGTAGCAGTGTATCTGATTCAGTATTCCAACTATAGGAGACTCATCCATTGGCTCATAATTACTTTTTTTCGTTTTGCGTTACTCCTTTGTTTAAAAAAAAAAAAACCCTTATATATTTTCTAATCTGTTTAAAAAAATAATTTTTTATAATATTTTAATTTTTCACGTGACATATTTAAAATTATAAAATTTAAGAATATTTTAATACATTTGACATAACTTTAATTTAGAATCACAAAATTAAAATTTTTTCATTCTTTTATTAAATATCATTCTAAATCAAATTAAATCATATTTTTAAAAAGGAGGGATTACTTTTTTATACTTTTAAAATCGAGGTAGCAGTGCTAGCTAACTTTCAAATAACATGTTTACTAATATTCTATTTATTTTTATTTACTTGTCAAATATTTTTAATTTGATTTTCCTTTCTACTTATCATTTTTAATAGATAAACAAAGGATGATTTTCTTTTTTCTATTATATTTTTAATTTATTTACACTGAGTTAAGGTCTTTAAAAAATATTACGAGTATATTGATTATTATTTTCTCAAACAAGTGTGACAAATTAAA</genome_strand>
        <mrna_strand>AATTTGTACAGGAAATATCAAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA................................................................................................................................AAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAANN................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGGGGGGGGGGGGGGGACCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCCCCCCAAAGGGGGGGCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436189" ref_strand="+" ref_description="SGN-E436189 [STM-62-L17]">
      <seq>ctgaaaataaaaagaagataagctcagaacccatagcattatcttacacccccctacccctaccccaaccccaaatcgaaaatttcgtaattctcactccataccataatccctttttaaaaccctttattatcagttcactacctgctgcagactcaaaatttaccaaatttcaacttaattttgatcttagaagaccaataattatggcgatttcggatactgtagtggggaatttaacgacgttgtacctgttagtgatagcggcaatgaaggcgtacggattgatgactggacggagctacggcggagtttttgtactgattgtatcaacagctgttgtaggaagtgtattgattttgagtttgacgtgggatgtgtcacgtaaggttactaggtgtgcttttacacgcgatcgttatcttactcagaatcggaatcagccacgtcatcattccgatgagttgtgtagaggtggtatatgttggcacggcgttgctgttagatctccggcgtcgcagtttcgggttcggctttctcagcaccaccctcgctagcggttaagaaaagtgaaaatcgagtgattttaattcactgtaagtatgtaaattagttttggatcgaatttttctatctgtttttgggcttttgacgattggaaaagtggggaaaatcagtgtaaaatagtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="47835" stop="49138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48135" g_stop="48838" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E436189" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48135" e_stop="48838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAATAAAAAGAAGATAAGCTCAGAACCCATAGCATTATCTTACACCCCCCCCCACCCACCACCCCCTACCCCAACCCAAAATCCAAAATTTCGTAATTCTCACTCCATACCATAATACCCTTTTAAAACCCTCTAATATCAGTTCACTACCTACTTTAGACTAAAATTTTACCAAAATTTCAACTTGATTTTGATCTTAGAAGACCGATAAAAATGGCGATTTCGGATACTGTAGTGGGGAATTTAACGACGTTGTACCTGTTAGTGATAGCGGCAATGAAGGCGTACGGATTGATGACAGGACGGAGCTACGGCGGAGTTTTTGTGCTGATTGTGTCAACAGCTGTTGTAGGTACTGTGTTGATTTTGAGTTTGACGTGGGATGTGTCACGTAAGGTTACTAGGTGTGCTTTGACACGCGATCGTCATCTTACTCTGAATCGGAATCAGCCACGTCATCATTCCGATGAGTTGTGTAGAGGTGGTATATGTTGGCACGGCGTTGCTGTTAGATCTCCGGCGTCGCAGTTTCGGTTCCGGCTTCCTCAGCACCACCCTCGCTAGCGGTAAAGATAAGTGAAAATCGAGTGATTTTAACTCACTGTAAGTATGTAAATT-GTTTTGGATCGAATTTTTCTATCTGTTTTTTTGGCTTTATGACGATCGAAAATTTGGGGAAAATCAGTGTAAAATAGTCATC</genome_strand>
        <mrna_strand>CTGAAAATAAAAAGAAGATAAGCTCAGAACCCATAGCATTATCTTACA-------CC-CCC-CTA-CCCCTACCCCAACCCCAAATCGAAAATTTCGTAATTCTCACTCCATACCATAATCCCTTTTTAAAACCCTTTATTATCAGTTCACTACCTGCTGCAGACTCAAAATTTACC-AAATTTCAACTTAATTTTGATCTTAGAAGACCAATAATTATGGCGATTTCGGATACTGTAGTGGGGAATTTAACGACGTTGTACCTGTTAGTGATAGCGGCAATGAAGGCGTACGGATTGATGACTGGACGGAGCTACGGCGGAGTTTTTGTACTGATTGTATCAACAGCTGTTGTAGGAAGTGTATTGATTTTGAGTTTGACGTGGGATGTGTCACGTAAGGTTACTAGGTGTGCTTTTACACGCGATCGTTATCTTACTCAGAATCGGAATCAGCCACGTCATCATTCCGATGAGTTGTGTAGAGGTGGTATATGTTGGCACGGCGTTGCTGTTAGATCTCCGGCGTCGCAGTTTCGGGTTCGGCTTTCTCAGCACCACCCTCGCTAGCGGTTAAGAAAAGTGAAAATCGAGTGATTTTAATTCACTGTAAGTATGTAAATTAGTTTTGGATCGAATTTTTCTATCTG-TTTTTGGGCTTT-TGACGATTGGAAAAGTGGGGAAAATCAGTGTAAAATAGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460288" ref_strand="+" ref_description="SGN-E460288 [cPRO-30-F5]">
      <seq>ctgaaaataaaaagaagataagctcagaacccatagcattatcttacacccccctacccctaccccaaccccaaatcgaaaatttcgtaattctcactccataccataatccctttttaaaaccctttattatcagttcactacctgctgcagactcaaaatttaccaaatttcaacttaattttgatcttagaagaccaataattatggcgatttcggatactgtagtggggaatttaacgacgttgtacctgttagtgatagcggcaatgaaggcgtacggattgatgactggacggagctacggcggagtttttgtactgattgtatcaacagctgttgtaggaagtgtattgattttgagtttgacgtgggatgtgtcacgtaaggttactaggtgtgcttttacacgcgatcgttatcttactcagaatcggaatcagccacgtcatcattccgatgagttgtgtagaggtggtatatgttggcacggcgttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="47835" stop="48946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48135" g_stop="48646" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E460288" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48135" e_stop="48646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAATAAAAAGAAGATAAGCTCAGAACCCATAGCATTATCTTACACCCCCCCCCACCCACCACCCCCTACCCCAACCCAAAATCCAAAATTTCGTAATTCTCACTCCATACCATAATACCCTTTTAAAACCCTCTAATATCAGTTCACTACCTACTTTAGACTAAAATTTTACCAAAATTTCAACTTGATTTTGATCTTAGAAGACCGATAAAAATGGCGATTTCGGATACTGTAGTGGGGAATTTAACGACGTTGTACCTGTTAGTGATAGCGGCAATGAAGGCGTACGGATTGATGACAGGACGGAGCTACGGCGGAGTTTTTGTGCTGATTGTGTCAACAGCTGTTGTAGGTACTGTGTTGATTTTGAGTTTGACGTGGGATGTGTCACGTAAGGTTACTAGGTGTGCTTTGACACGCGATCGTCATCTTACTCTGAATCGGAATCAGCCACGTCATCATTCCGATGAGTTGTGTAGAGGTGGTATATGTTGGCACGGCGTTGCTG</genome_strand>
        <mrna_strand>CTGAAAATAAAAAGAAGATAAGCTCAGAACCCATAGCATTATCTTACA-------CC-CCC-CTA-CCCCTACCCCAACCCCAAATCGAAAATTTCGTAATTCTCACTCCATACCATAATCCCTTTTTAAAACCCTTTATTATCAGTTCACTACCTGCTGCAGACTCAAAATTTACC-AAATTTCAACTTAATTTTGATCTTAGAAGACCAATAATTATGGCGATTTCGGATACTGTAGTGGGGAATTTAACGACGTTGTACCTGTTAGTGATAGCGGCAATGAAGGCGTACGGATTGATGACTGGACGGAGCTACGGCGGAGTTTTTGTACTGATTGTATCAACAGCTGTTGTAGGAAGTGTATTGATTTTGAGTTTGACGTGGGATGTGTCACGTAAGGTTACTAGGTGTGCTTTTACACGCGATCGTTATCTTACTCAGAATCGGAATCAGCCACGTCATCATTCCGATGAGTTGTGTAGAGGTGGTATATGTTGGCACGGCGTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436190" ref_strand="+" ref_description="SGN-E436190 [STM-62-L17]">
      <seq>ttttttttttagcgagaaaaaactgattgcacatatatttttatttacatgcctaaactgtaattccgatgactattttacactgattttccccaactttccaatcgtcaaaaagccaaaaacagatagaaaaattcgatccaaaactaatttacatacttacagtgaattaaaatcactcgattttcacttttcttaaccgctagcgagggtggtgctgaggaagccggaaccgaaactgcgacgccggagatctaacagcaacgccgtgccaacatataccacctctacacaactcatcggaatgatgacgtggctgattccgattctgagtaagataacgatcgcgtgtaaaagcacacctagtaaccttacgtgacacatcccacgtcaaactcaaaatcaatacacttcctacaacagctgttgatacaatcagtacaaaaactccgccgtagctccgtccagtcatcaatccgtacgccttcattgccgctatcactaacaggtacaacgtcgttaaattccccactacagtatccgaaatcgccataattattggtcttctaagatcaaaattaagttgaaaatttggtaaattttgagtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="49196" stop="47996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48905" g_stop="48295" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E436190" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48905" e_stop="48295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCTCGTAGCGAGAAAAAACCGATTGCACATATATTTTTATTTACATGCCTAAACTGCGATTCCGATGACTATTTTACACTGATTTTCCCCAAATTTTCGATCGTCATAAAGCCAAAAAAACAGATAGAAAAATTCGATCCAAAAC-AATTTACATACTTACAGTGAGTTAAAATCACTCGATTTTCACTTATCTTTACCGCTAGCGAGGGTGGTGCTGAGGAAGCCGGAACCGAAACTGCGACGCCGGAGATCTAACAGCAACGCCGTGCCAACATATACCACCTCTACACAACTCATCGGAATGATGACGTGGCTGATTCCGATTCAGAGTAAGATGACGATCGCGTGTCAAAGCACACCTAGTAACCTTACGTGACACATCCCACGTCAAACTCAAAATCAACACAGTACCTACAACAGCTGTTGACACAATCAGCACAAAAACTCCGCCGTAGCTCCGTCCTGTCATCAATCCGTACGCCTTCATTGCCGCTATCACTAACAGGTACAACGTCGTTAAATTCCCCACTACAGTATCCGAAATCGCCATTTTTATCGGTCTTCTAAGATCAAAATCAAGTTGAAATTTTGGTAAAATTTTAGTCTA</genome_strand>
        <mrna_strand>TTTTTTTTTTAGCGAGAAAAAACTGATTGCACATATATTTTTATTTACATGCCTAAACTGTAATTCCGATGACTATTTTACACTGATTTTCCCCAACTTTCCAATCGTCAAAAAGCC--AAAAACAGATAGAAAAATTCGATCCAAAACTAATTTACATACTTACAGTGAATTAAAATCACTCGATTTTCACTTTTCTTAACCGCTAGCGAGGGTGGTGCTGAGGAAGCCGGAACCGAAACTGCGACGCCGGAGATCTAACAGCAACGCCGTGCCAACATATACCACCTCTACACAACTCATCGGAATGATGACGTGGCTGATTCCGATTCTGAGTAAGATAACGATCGCGTGTAAAAGCACACCTAGTAACCTTACGTGACACATCCCACGTCAAACTCAAAATCAATACACTTCCTACAACAGCTGTTGATACAATCAGTACAAAAACTCCGCCGTAGCTCCGTCCAGTCATCAATCCGTACGCCTTCATTGCCGCTATCACTAACAGGTACAACGTCGTTAAATTCCCCACTACAGTATCCGAAATCGCCATAATTATTGGTCTTCTAAGATCAAAATTAAGTTGAAAATTTGGTAAATTTTGAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284767" ref_strand="+" ref_description="SGN-E284767 [cLES-3-B11]">
      <seq>ttttttcctccaatttgtacaggaaatatcgaagaacaaactaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgatatatgctatagacttgtcgagcgtaatgctttaccttctcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54369" stop="50696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54069" g_stop="53950" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="161" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="50991" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="510" r_length="349" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E284767" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54069" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="50991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTTGTCGAGCGTAATGCTTTACCTTCTCAATGCCT</genome_strand>
        <mrna_strand>TTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTTGTCGAGCGTAATGCTTTACCTTCTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734583" ref_strand="+" ref_description="SGN-E734583 [LB13AC01]">
      <seq>caattttttcctccaatttgtacaggaaatatcaaagaacaaactaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgatatatgctatagacttgtcgagcgtaatgctttaccttctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54372" stop="50696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54072" g_stop="53950" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="164" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="50997" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="507" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="524"/>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E734583" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54072" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="50997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTTGTCGAGCGTAATGCTTTACCTTCTCA</genome_strand>
        <mrna_strand>CAATTTTTTCCTCCAATTTGTACAGGAAATATCAAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTTGTCGAGCGTAATGCTTTACCTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732271" ref_strand="+" ref_description="SGN-E732271 [LB01CH08]">
      <seq>tttcctccaatttgtacaggaaatatcgaagaacaaactaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgatatatgctatagacttgtcgagcgtaatgctttaccttctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54366" stop="50696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54066" g_stop="53950" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="158" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="50997" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="501" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="511"/>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E732271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54066" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="50997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTTGTCGAGCGTAATGCTTTACCTTCTCA</genome_strand>
        <mrna_strand>TTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTTGTCGAGCGTAATGCTTTACCTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351138" ref_strand="+" ref_description="SGN-E351138 [cTOS-6-N6]">
      <seq>aatttgtacaggaaatatcgaagaacaaactaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgatatatgctatagacttgtcgagcgtaatgctttaccttctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54358" stop="50696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54058" g_stop="53950" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="150" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="50997" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="493" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="509"/>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E351138" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54058" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="50997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTTGTCGAGCGTAATGCTTTACCTTCTCA</genome_strand>
        <mrna_strand>AATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTTGTCGAGCGTAATGCTTTACCTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308411" ref_strand="+" ref_description="SGN-E308411 [cLEY-25-E10]">
      <seq>gaagaagaaactaacccatgggtggaggcaatggacaaaaggcaaatatgggtcgtgagaagaacattgaaaatatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcatacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgtgcaaaaactgttgctccgttatgctataaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgatatatgctatacacttgtcgagcgtaatgctttaccttctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54339" stop="50696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54039" g_stop="53950" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="131" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="50997" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="474" r_length="343" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E308411" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54039" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="50997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTTGTCGAGCGTAATGCTTTACCTTCTCA</genome_strand>
        <mrna_strand>GAAGAAGAAACTAACCCATGGGTGGAGGCAATGGACAAAAGGCAAATATGGGTCGTGAGAAGAACATTGAAAATATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCATACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTGCAAAAACTGTTGCTCCGTTATGCTATAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATACACTTGTCGAGCGTAATGCTTTACCTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723617" ref_strand="+" ref_description="SGN-E723617 [FC21AC05]">
      <seq>gacttccttaaaaacccacttttttcctccaatttgtacaggaaatatcgaagaacaaactaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcaaagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgaaatatgctataaacttgtcgagcgtaatgctttacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54388" stop="50701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54089" g_stop="53950" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="180" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51001" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="519" r_length="339" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E723617" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54089" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCCTTAAAAAACCCAATTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTTGTCGAGCGTAATGCTTTACCTT</genome_strand>
        <mrna_strand>GACTTCCTT-AAAAACCCACTTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAAAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGAAATATGCTATAAACTTGTCGAGCGTAATGCTTTACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218538" ref_strand="+" ref_description="SGN-E218538 [cLEL-18-D14](-)">
      <seq>aaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgatatatgctatagacttgtcgagcgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54270" stop="50712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53970" g_stop="53950" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="62" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51013" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="389" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="417"/>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E218538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53970" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTTGTCGAGCGTA</genome_strand>
        <mrna_strand>AAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTTGTCGAGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218950" ref_strand="+" ref_description="SGN-E218950 [cLEL-18-D14](-)">
      <seq>gaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgatatatgctatagacttgtcgagcgttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54168" stop="50712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53963" g_stop="53950" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="55" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51016" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="379" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="383" polyA_stop="410"/>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E218950" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53963" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTTGTCGAGC</genome_strand>
        <mrna_strand>GAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTTGTCGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732115" ref_strand="+" ref_description="SGN-E732115 [LB01BC07]">
      <seq>agaaacccaattttttcctccaatttgtacaggaaatatcaaagaacaaactaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54379" stop="50735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54079" g_stop="53950" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="171" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51026" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="485" r_length="314" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E732115" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54079" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCCAATTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGA</genome_strand>
        <mrna_strand>AGAAACCCAATTTTTTCCTCCAATTTGTACAGGAAATATCAAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715924" ref_strand="+" ref_description="SGN-E715924 [FB15CF01]">
      <seq>gaaacccaattttttcctccaatttgtacaggaaatatcaaagaacaaactaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54377" stop="50735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54078" g_stop="53950" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="170" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51027" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="483" r_length="313" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E715924" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54078" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCAATTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAG</genome_strand>
        <mrna_strand>GAAACCCAATTTTTTCCTCCAATTTGTACAGGAAATATCAAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732856" ref_strand="+" ref_description="SGN-E732856 [LB03BC12]">
      <seq>cgccaatttgtacaggaaatatcaaagaacaaactaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54362" stop="50735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54062" g_stop="53950" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="154" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51027" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="467" r_length="313" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E732856" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54062" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAG</genome_strand>
        <mrna_strand>CGCCAATTTGTACAGGAAATATCAAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712926" ref_strand="+" ref_description="SGN-E712926 [FB06AH03]">
      <seq>attttttcctccaatttgtacaggaaatatcaaagaacaaactaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54370" stop="50735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54070" g_stop="53950" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="162" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51028" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="474" r_length="312" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E712926" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54070" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATA</genome_strand>
        <mrna_strand>ATTTTTTCCTCCAATTTGTACAGGAAATATCAAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732787" ref_strand="+" ref_description="SGN-E732787 [LB03AF02]">
      <seq>cccattttttcctccaatttgtacaggaaatatcaaagaacaaactaatccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcacagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttactttggaactgtgtgaaatatatgtctataataactgcctccttttggattgatatatgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54374" stop="50729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54073" g_stop="53950" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="165" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51029" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="476" r_length="311" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E732787" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54073" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTAT</genome_strand>
        <mrna_strand>CCCATTTTTTCCTCCAATTTGTACAGGAAATATCAAAGAACAAACTAATCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCACAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTACTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354770" ref_strand="+" ref_description="SGN-E354770 [cTOS-19-I9]">
      <seq>caatttgtacaggaaatatcgaagaacaaactaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgatataaaaaaccnnaaaaaaaaanaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54359" stop="50735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54059" g_stop="53950" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="151" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51036" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="455" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="482"/>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E354770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54059" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATAT</genome_strand>
        <mrna_strand>CAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352680" ref_strand="+" ref_description="SGN-E352680 [cTOS-11-E18]">
      <seq>caatttgtacaggaaatatcgaagaacaaactaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgataaaaannnnaanaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54359" stop="50735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54059" g_stop="53950" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="151" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51038" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="453" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="463" polyA_stop="474"/>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E352680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54059" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGAT</genome_strand>
        <mrna_strand>CAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216128" ref_strand="+" ref_description="SGN-E216128 [cLEL-13-K3](-)">
      <seq>gaacaaactaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaaaatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagatgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54336" stop="50735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54036" g_stop="53950" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="128" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51038" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="430" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="449"/>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E216128" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54036" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGAT</genome_strand>
        <mrna_strand>GAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAAATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGATGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216259" ref_strand="+" ref_description="SGN-E216259 [cLEL-13-K3](-)">
      <seq>aaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagcttgaatctgttctaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggattgataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="51561" stop="50735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51261" g_stop="51038" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="226" polyA_stop="244"/>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E216259" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51261" e_stop="51038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTC-AAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGAT</genome_strand>
        <mrna_strand>AAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGCTTGAATCTGTTCTAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295313" ref_strand="+" ref_description="SGN-E295313 [cLET-20-F22]">
      <seq>tccaatttgtacattaaatatctaagaacaaactaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcacagtctgggctgatggttgtttcccaactatgtttcgggattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataactgcctccttttggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54361" stop="50741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54061" g_stop="53950" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="153" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51041" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="452" r_length="299" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E295313" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54061" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATT</genome_strand>
        <mrna_strand>TCCAATTTGTACATTAAATATCTAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCACAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCGGGATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220367" ref_strand="+" ref_description="SGN-E220367 [cLEL-12-M2](-)">
      <seq>ccagtgcaaggtgtgcttgcagacattcatttgcaccacttctgaagtcaagtgcagagaccatgctgtggcgaagcatcccaaatctgatgtctatgcgtgtttccctcatctcaagtaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttagccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaacctgttgatggcacttagtttggccctgtgtcccaaaaatgtccccccatagctgcctccttttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="51642" stop="50778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51343" g_stop="51043" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E220367" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51343" e_stop="51043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGT-CTATAATAACTGCCTCCTTTTGGA</genome_strand>
        <mrna_strand>CCAGTGCAAGGTGTGCTTGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGACCATGCTGTGGCGAAGCATCCCAAATCTGATGTCTATGCGTGTTTCCCTCATCTCAAGTAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAGCCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAACCTGTTGATGGCACTTAGTTTGGCCCTGTGTCCCAAAAATGTCCCCCCATAGCTGCCTCCTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417537" ref_strand="+" ref_description="SGN-E417537 [STM-25-J13]">
      <seq>ttttttttcctccaatttgtacaggaaagatcaaagaacaaaccaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaacatggaaaagatgaaaggccaaaagggaagtcagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagttaagtgcagagaacacgctgaggcgaaacatcccaaatctgatgtcaatgcatgtttccctcatctcaagaaatgattcacatatcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgcttcgttctgcttcaaactgttgatggctacttagtttggaactctgtgtgaaatatatgtctataataactgcctcctcttggnttcnnnannaaaaaaaaaaaannaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54369" stop="50741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54071" g_stop="53950" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="163" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51044" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="462" r_length="299" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="485"/>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E417537" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54071" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGC-ACTTAGTTTGGAA--CTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGG</genome_strand>
        <mrna_strand>TTTTTTTTCCTCCAATTTGTACAGGAAAGATCAAAGAACAAACCAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAACATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGTCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTTAAGTGCAGAGAACACGCTGAGGCGAAACATCCCAAATCTGATGTCAATGCATGTTTCCCTCATCTCAAGAAATGATTCACATATCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTTCGTTCTGCTTCAAACTGTTGATGGCTACTTAGTTTGGAACTCTGTGTGAAATATATGTCTATAATAACTGCCTCCTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622123" ref_strand="-" ref_description="SGN-E622123 [72487]">
      <seq>cctccaatttgtacaggaaagatcaacaaaccaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaacatggaaaagatgaaaggccaaaagggaagtcagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagttaagtgcagagaacatgctgaggcgaaacatcccaaatctgatgtctatgcatgtttccctaatctcaagaaatgattcacatatcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgcttcgttctgcttcaaactgttgatgggctacttagtttggaactctgtgtgaaatatatgtctataataattgcctcctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54348" stop="50747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54063" g_stop="53950" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="151" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51046" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="449" r_length="298" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E622123" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622123" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54063" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGAT-GGC-ACTTAGTTTGGAA--CTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTT</genome_strand>
        <mrna_strand>CCTCCAATTTGTACAGGAAAGATC----AACAAACCAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAACATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGTCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTTAAGTGCAGAGAACATGCTGAGGCGAAACATCCCAAATCTGATGTCTATGCATGTTTCCCTAATCTCAAGAAATGATTCACATATCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTTCGTTCTGCTTCAAACTGTTGATGGGCTACTTAGTTTGGAACTCTGTGTGAAATATATGTCTATAATAATTGCCTCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615026" ref_strand="+" ref_description="SGN-E615026 [64820]">
      <seq>aggcaatggacagaaggcaaagatggctcgtgagaagaacatggaaaagatgaaaggccaaaagggaagtcagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagttaagtgcagagaacacgctgaggcgaaacatcccaaatctgatgtcaatgcatgtttccctcatctcaagaaatgattcacatatcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgcttcgttctgcttcaaactgttgatggctacttagtttggaactctgtgtgaaatatatgtctataataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54314" stop="50758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54014" g_stop="53950" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="106" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51054" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="395" r_length="289" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E615026" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54014" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGC-ACTTAGTTTGGAA--CTGTGTGAAATATATGTCTATAATAACTGC</genome_strand>
        <mrna_strand>AGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAACATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGTCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTTAAGTGCAGAGAACACGCTGAGGCGAAACATCCCAAATCTGATGTCAATGCATGTTTCCCTCATCTCAAGAAATGATTCACATATCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTTCGTTCTGCTTCAAACTGTTGATGGCTACTTAGTTTGGAACTCTGTGTGAAATATATGTCTATAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608037" ref_strand="-" ref_description="SGN-E608037 [24016]">
      <seq>atttttcttcctccaatttgtacaggaaagatcaacaaaccaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaacatggaaaagatgaaaggccaaaagggaagtcagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagttaagtgcagagaacatgctgaggcgaaacatcccaaatctgatgtctatgcatgtttccctaataaaaagaaatgattcacatatcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgcttcgttctgcttcaaactgttgatgggctacttagtttggaactctgtgtgaaatatatgtctataataacttgcgtaacaagcgttttgtcgtttttagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54348" stop="50752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54071" g_stop="53950" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="160" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51056" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="448" r_length="288" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E608037" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608037" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54071" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTT-TTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGAT-GGC-ACTTAGTTTGGAA--CTGTGTGAAATATATGTCTATAATAACT</genome_strand>
        <mrna_strand>ATTTTTCTTCCTCCAATTTGTACAGGAAAGATC----AACAAACCAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAACATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGTCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTTAAGTGCAGAGAACATGCTGAGGCGAAACATCCCAAATCTGATGTCTATGCATGTTTCCCTAATAAAAAGAAATGATTCACATATCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTTCGTTCTGCTTCAAACTGTTGATGGGCTACTTAGTTTGGAACTCTGTGTGAAATATATGTCTATAATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461995" ref_strand="+" ref_description="SGN-E461995 [cPRO-10-A24]">
      <seq>caccacccaactaccctaatttctcacttttacactgtatatatatacaataaaagggtttctcttaaagccactactaaaaaaaaaaacccaattttttttcctccaatttgtacaggaaagatcaaagaacaaaccaagccatgggtggaggcaatggacagaaggcaaagatggctctgtgagaagaacatggaaaagatgaaaggccaaaagggaagtcagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagttaagtgcagagaacacgctgaggcgaaacatcccaaatctgatgtcaatgcatgtttccctcatctcaagaaatgattcacatatcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgcttcgttctgcttcaaactgttgatggctacttagtttggaactctgtgtgaaatatatgtctataataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54778" stop="50758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54478" g_stop="54447" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54446" i_stop="54129" i_length="318">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54128" g_stop="53950" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="217" r_length="185" r_score="0.849"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="258" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51339" g_stop="51058" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="543" r_length="285" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E461995" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54478" e_stop="54447"/>
          <exon e_start="54128" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCCAACTACCCTAATTTCTCACTTTTTGCTCTATATATATTATACTTTCTTCGTTCCGTATTATTTGTTATGTTGTATTTTTTAAAAATTAATTTAATTAATTTTCAAAACAATATTATTGTACTTTTAAAAAATTAATTTAATTAATTTTTAAAATTAAATTAAATCACATTAATTTGATATAAAAAATAGATATTCTAAAATTATAAAAAAATATTATAAAATTACAATTTTTTACATATTAATATGATAAAAAATATATTTTAAATTGTTAGTCAAAATTTTTTAAGTTTGACTCTAAAAATAGAATTTATAGAATTTATGACAAATAATAACGGACGAATGGAATGTATATATATATATGTAAAGGGTTTCTCTCAAAGCCACT--T-CCTTAAAAAACCCAA--TTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTC-GTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGC-ACTTAGTTTGGAA--CTGTGTGAAATATATGTCTATAATAA</genome_strand>
        <mrna_strand>CACCACCCAACTACCCTAATTTCTCACTTTTA..............................................................................................................................................................................................................................................................................................................................CACTGTATATATATACAATAAAAGGGTTTCTCTTAAAGCCACTACTAAAAAAAAAAACCCAATTTTTTTTCCTCCAATTTGTACAGGAAAGATCAAAGAACAAACCAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCTGTGAGAAGAACATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGTCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTTAAGTGCAGAGAACACGCTGAGGCGAAACATCCCAAATCTGATGTCAATGCATGTTTCCCTCATCTCAAGAAATGATTCACATATCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTTCGTTCTGCTTCAAACTGTTGATGGCTACTTAGTTTGGAACTCTGTGTGAAATATATGTCTATAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714318" ref_strand="+" ref_description="SGN-E714318 [FB11AE03]">
      <seq>aagaaacccaattttttcctccaatttgtacaggaaatatcaaagaacaaactaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttggaactgtgtgaaatatatgtctataataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54380" stop="50758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54080" g_stop="53950" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="172" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51058" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="454" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="465"/>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E714318" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54080" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACCCAATTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAA</genome_strand>
        <mrna_strand>AAGAAACCCAATTTTTTCCTCCAATTTGTACAGGAAATATCAAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586361" ref_strand="-" ref_description="SGN-E586361 [60416]">
      <seq>aacaaaccaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaacatggaaaagatgaaaggccaaaagggaagtcagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagttaagtgcagagaacacgctgaggcgaaacatcccaaatctgatgtcaatgcatgtttccctcatctcaagaaatgattcacatatcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgcttcgttctgcttcaaactgttgatggctacttagtttggaactctgtgtgaaatatatgtctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54335" stop="50762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54035" g_stop="53950" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="127" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51062" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="408" r_length="281" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E586361" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586361" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54035" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGC-ACTTAGTTTGGAA--CTGTGTGAAATATATGTCTATA</genome_strand>
        <mrna_strand>AACAAACCAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAACATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGTCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTTAAGTGCAGAGAACACGCTGAGGCGAAACATCCCAAATCTGATGTCAATGCATGTTTCCCTCATCTCAAGAAATGATTCACATATCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTTCGTTCTGCTTCAAACTGTTGATGGCTACTTAGTTTGGAACTCTGTGTGAAATATATGTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446310" ref_strand="+" ref_description="SGN-E446310 [cSTA-20-N13]">
      <seq>ttttttttcctccaatttgtacaggaaagatcaaagaacaaaccaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaacatggaaaagatgaaaggccaaaagggaagtcagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagttaagtgcagagaacacgctgaggcgaaacatcccaaatctgatgtcaatgcatgtttccctcatctcaagaaatgattcacatatcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgcttcgttctgcttcaaactgttgatggctacttagtttggaactctgtgtgaaatatatgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54369" stop="50762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54071" g_stop="53950" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="163" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51064" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="442" r_length="279" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E446310" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54071" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGC-ACTTAGTTTGGAA--CTGTGTGAAATATATGTCTA</genome_strand>
        <mrna_strand>TTTTTTTTCCTCCAATTTGTACAGGAAAGATCAAAGAACAAACCAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAACATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGTCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTTAAGTGCAGAGAACACGCTGAGGCGAAACATCCCAAATCTGATGTCAATGCATGTTTCCCTCATCTCAAGAAATGATTCACATATCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTTCGTTCTGCTTCAAACTGTTGATGGCTACTTAGTTTGGAACTCTGTGTGAAATATATGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338182" ref_strand="+" ref_description="SGN-E338182 [cTOE-13-D24]">
      <seq>ttttttcctccaatttgtacaggaaatatcgaagaacaaactaagccatgggtggaggcaatggacagaaggcaaagatggctcgtgagaagaatatggaaaagatgaaaggccaaaagggaagccagcttgaggctaacaagaaggctatgaatatccagtgcaaggtgtgcatgcagacattcatttgcaccacttctgaagtcaagtgcagagaacatgctgaggcgaagcatcccaaatctgatgtctatgcatgtttccctcatctcaagaaatgattcacatttcagagtctgggctgatggttgtttcccaactatgtttctaaattctgttaaccatgataaagtttgaatctgttcaaaagttgttgctccgttctgcttcaaactgttgatggcacttagtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="54369" stop="50786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54069" g_stop="53950" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53864" g_stop="53824" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="161" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51086" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="415" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E338182" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54069" e_stop="53950"/>
          <exon e_start="53864" e_stop="53824"/>
          <exon e_start="51339" e_stop="51086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGGGTAGGGATATCTAAGTTTGTTTATAATTTTGGATTTTTTTTTCGAAGAAAGATTGGAGTTTTAGCTAATTATGGTGTATGTACAGGAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAGGTTTTTGTTGTTTCCACTTAAATTTATCTTCTTTCTTCATACCCAGTTCCTTTATCTGTAGAATTCTTTTCAACCAGCTGAAAATTTTATAATTTAGGGTTTCAATTGGGTTTTTTTTATTCTATATATTTGTTTGGGGATACACCAAAGGGTTTTAACTAAGTTTTGGAGTTTTTAATTGGATATCTGGAGTTCTTGAAGTTTTTTGTTGTGTAGACTGATAATTTAGTCAGATCTCTGTGTCTACGAGCTAAAGGGGATGATTTTAGGTGCTGCAATTTGTTAATCTCTTGTTACTCTAATCTAATTGATCGGATGATGAAGAATCTGGATTATATAATTTGGAAAATTGATTTTGATATCTCGAACAAATAACAACAATATTATACACAGTTTAATCCTATGAGTGGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAACTTGTTAGAAAGAGTACTTCATATAATATTCGGACATACTACCTTGTTTGCATAAATTATTTGATCTAGTTGAGCAGGAGAAAATTCATCGTGTTTTGAATCTCTTAGTATAAAGAGCAGAGAAATTATGTTTCTGCGATGATGTTTCACCTTTGGAACATCAGGGAAGTGTTAGGCAAAGTTATACGCAGGTGAATTAGAAATAGTAGCAGGAGACGTTTGTGCAAACAGGAAGACCACTGGTATTTCAGTAACAGTAGTAGATTGATTGTTTCCATGATCGGGGACAACAGAATAAAAGAAATATCCTTGAGAATATTGTAAAAACAATTGAATTAACAAGGAAATGGGAGGAACATCCTTTTAGCTTGAGATATGTACGGCACACCCTTTAGGATATTTGATCGATGAAGGTGTATCCCTCATGGCTTAACAAACTCTTCTAGTATAATTTATGATCAGAAAAAACAGAGAATAAACAAAAGAATCTCGCACTACAAAAGAAAAGGATCTCGCACTACAAAAAAAATCATTTTTCTAACATGTCTACATGCTATGCTACTGCCTCACAGCTATAAAGAGAAGCTGAAATAGGTGTCATCTGGAATATATTTTCCCCCATTCCAAACACATTAGTGGCAAAGTGAGTTTGTTTTGTTGAAGTTTTGAAAGATACAAAAGCTGAAGTCATGCTTGTTAAAGAGGGATAGATTGAGAAAAGTGAATTAGAGACACATGACGTATGTTTTTTGATTTAGATGTAAGAATAAATTGTGGGCGAGTCAACAATTGTGTACCTGTAAATGCAGAGGAAGATTCGTTGAACTCACCACCAAAAGAATTGCCTGCCTCTATGTCAAACTTTGAATCTCATGGTAACAAAGTTAGAAATTATCACAAACTAAATATCTTTGCTTTGCTGCGTGTTTTCGAAAGAAACTAGAGAAATATCTCTGTTGAAGTAAAATGAGTTGTTCTATTTTTTATATTCATAGAGAAGTTGTATATATTTCTCTTACAGAAAAACCGATCACATCCACCAGTTCTTTTTTTTAGTCATGTGGTGGTTTAGTTTTAGATAACTTAAATCTTTATCTCTGTCAACGGGTTGGGTCGGGTCAGCCCACACAGGAGATCCGATATCCAACAGTACTGTGCCATTTGGTATCTAGTTTTCAAGATTTTCTTCATGGAACTAGAACTTGGGATTTATTGCTCAGAAAATTAATGGTCCTCTGCCCAATCCAAGAACTATAATTCTTGCTGAACTGTTATCTATTTGTCCTGATTGTTGCTAGTTTTCAAATGCAGTGGAATAAGAAATAGGGCGGTAAACGAGGAAAACGGTTTCTAAACAATGTTATGCACTTGTTTTAGTGTGTGCTAATTGTCAAAAATGTAGTGTAATAAGAAACAAGATCATAAACAAGGAAAACAATCTCTAAACAATGTAATTCATCTGTCTAGTTTTTGCTACTTTGTCAGAAAACTAGACAGCAACAAGAAAGAAGCTATGCAAAACTGTTATCTAGTTATTTTGAAACAAAACCTGTTATCCATTTTTCTTAACATTTGCTAATTGTTAAATGCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGG</genome_strand>
        <mrna_strand>TTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG.....................................................................................GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273044" ref_strand="+" ref_description="SGN-E273044 [cLEM-25-F6]">
      <seq>ctcgtgccgggaggatagtgtgtacgctgcgatactcctatccttggaaaggaagtgttcaagttcgtgtatagatttattctcttaatatcttgttaatgagtctttaataggataattattttcttacaattctgacattagcttttaaaacataactgaccatttgagtagtttttgtattcaatttgtgcaattgtgacatattttttaatagctttgaatagtggtttttacattgttatgtatttggatgttacaagctattagatgtgaagcgtctgtccactcctttgcctaggtatgctcctatgcattggcttgggaagtgtggaaaaagtggacgtaatcttctcctttataatgtcatatacacgtcaagattaaaaaaggagaaaattttcataccattttcgtgattattttagcaagtagcaagtccgaaattttctttgtttttatcagaacaatatatgttgaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="53707" stop="52631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53415" g_stop="52931" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E273044" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53415" e_stop="52931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAAC</genome_strand>
        <mrna_strand>CTCGTGCCGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272924" ref_strand="+" ref_description="SGN-E272924 [cLEM-25-F16]">
      <seq>ctcgtgccgggaggatagtgtgtacgctgcgatactcctagcgttggaaaggaagtgttcaagctcctgtatagatttatgctcttaatatcttgtctatgaatctttaatacgataattattttcttacaattctgacattatctttttaaacataactgaccatttgagtagtttttgtgttcaatttgtgcaattgtgacatattttttaatagctttgaatagtggtttttacattgttatgtatttggatgtcacaagctattagatgtgaagcgtctgtccactcctttgcctaggtatgctcctatgcattggcttgggaagtgtggaaaaagtggacgtaatcttctcctttataatgtcatatacacgtccagattaaaaaaggagaaaattttgataccattttcgtgattattttagcgagtagcaagtccggaattttctttgttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="53707" stop="52655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53415" g_stop="52955" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E272924" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53415" e_stop="52955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTA</genome_strand>
        <mrna_strand>CTCGTGCCGGGAGGATAGTGTGTACGCTGCGATACTCCTAGCGTTGGAAAGGAAGTGTTCAAGCTCCTGTATAGATTTATGCTCTTAATATCTTGTCTATGAATCTTTAATACGATAATTATTTTCTTACAATTCTGACATTATCTTTTTAAACATAACTGACCATTTGAGTAGTTTTTGTGTTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTCACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCCAGATTAAAAAAGGAGAAAATTTTGATACCATTTTCGTGATTATTTTAGCGAGTAGCAAGTCCGGAATTTTCTTTGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704892" ref_strand="+" ref_description="SGN-E704892 [FA25CC07]">
      <seq>agaaaattgagggtgttttagagaaagatgatgactttacggtagaaaaggtttgtgaaaatcttgatttgaataagcactgtggtggtgaaagtgatgatcatgatgatgcagatgtgtgtagcaaaattgagttgatggaggaaaaggatgaggttaagaagattgatgagttgcttgttgtgaaggttaaagataccgcgaatgctgtggttgttgatgaagtcaaagtaggtgaaaatgaggtggttgaggtaggaggtgggttgagtaaaggggatgatgagaagacggataagatggcgatggatgaagatattgatgatgattgggagggaattgagagaagtgaattggaggaggaatttgctaaagctgttaactttgtggatgggggaaatggaaagaatagtggtatggagaatatggggagtgaattgatgatgcaattgtatggactccagaaaattgcaatcgaaggaccttgttacgaacctcaaccaatggcattgaaagtctatgcccgtgccaaatggaatgcgtggcagaaaatgggaagcatgaatcaggaggtggccatggagcagtatattaagcttttgccagaccatgtccccaattggacacatcatagtaagactgattgcgaagtagggtcttcagaaactaaaatgcctggagatccagatccaattcctgattcttctaatgatacaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="72756" stop="74890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73096" g_stop="73617" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="535" r_length="522" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73618" i_stop="74314" i_length="697">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74315" g_stop="74417" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="638" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74418" i_stop="74509" i_length="92">
            <donor d_prob="0.767" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74510" g_stop="74590" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="719" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E704892" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73096" e_stop="73617"/>
          <exon e_start="74315" e_stop="74417"/>
          <exon e_start="74510" e_stop="74590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGAAAAGGAAGATGATGACTTTACGGTCGAAAAGGTTTGTGAAAATCTTGATTTGAATAAGCACTGTGGTGGTGAAAGTGATGATCATGATGATGCAGATGTGTGCAGCAAAATTGAGTTGATGGAGGAAAAGGATGAGGTTAAGAAGATTGATGAGTTGCTTGTTGTGAAGGAGAAAGATACCGCGAATGCTGTGGTTGTTGATGAAGTCAAAGTAGGTGAAAATGAGGTGGTTGAGGTAGGAGGTGGGTTGAGTAAAGGGGATGATGAGAAGACGGATAAGATGGCGATGGATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTAGGAGAGGACACAATCAATATATACTAAAGAAGATTAGAAGGAACACTGCTGAAAATGGGGAAGATAAATCACCATCTCACATATAGTTTGATCGACTTTGAGTTTAATCATTCACGATTGAATTCCTTAACGTTGTTGTATGATCTGATCTAAAGTAGCTTTCCCCTTGCATAGTAGAACTAGCATTTATTCTTTACTTTTTTTCATCAGATCTACCGTATCCTGGTTTTACCAGAGAATAGTTTGACCAGAAACTAGAATAGATATCTATAGCCTAAATTTCGTAGTTAAATTGAGAGGACGGAGTCAGGAAACTAAACATGATATTTAGTACATTTATATCATAAGAAACTTGTGTTAGAATTTAGAAAAAGATACCTAGCATAAATTCAATAAGCAGTAAAGGACAGACCTTCAAACTACTTTCGGGTGTAGTTTGATTGCTAGTTATACAACAGGAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAGGTTGTTAAATATTTTCCTAAAAATTTTTTTTGGATAGATTACTGAAAGATTTTCTTGAAACGTTACTCCAAATGGTTGATTTACTGTTGCAGAATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGC</genome_strand>
        <mrna_strand>TGTTTTAGAGAAAGATGATGACTTTACGGTAGAAAAGGTTTGTGAAAATCTTGATTTGAATAAGCACTGTGGTGGTGAAAGTGATGATCATGATGATGCAGATGTGTGTAGCAAAATTGAGTTGATGGAGGAAAAGGATGAGGTTAAGAAGATTGATGAGTTGCTTGTTGTGAAGGTTAAAGATACCGCGAATGCTGTGGTTGTTGATGAAGTCAAAGTAGGTGAAAATGAGGTGGTTGAGGTAGGAGGTGGGTTGAGTAAAGGGGATGATGAGAAGACGGATAAGATGGCGATGGATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGCCAGACCATGTCCCCAATTGGACACATCATAGTAAG............................................................................................ACTGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268434" ref_strand="+" ref_description="SGN-E268434 [cLEI-13-D4]">
      <seq>atgatgactttacggtcgaaaaggtttgtgaaaatcttgatttgaataagcactgtggtggtgaaagtgatgatcatgatgatgcagatgtgtgcagcaaaattgagttgatggaggaaaaggatgaggttaagaagattgatgagttgcttgttgtgaaggagaaagataccgcgaatgctgtggttgttgatgaagtcaaagtaggtgaaaatgaggtggttgaggtaggaggtgggttgagtaaaggggatgatgagaagacggataagatggcgatggatgaagatattgatgatgattgggagggaattgagagaagtgaattggaggaggaatttgctaaagctgttaactttgtggatgggggaaatggaaagaatagtggtatggagaatatggggagtgaattgatgatgcaattgtatggactccagaaaattgcaatcgaaggaccttgttacgaacctcaaccaatggcattgaaagactatgcccgtgccaaatggtataacctcatactccaaaaaatatgagctttatcatattgttttgtactctatttcaattgcattaattttttaaaatgttctttgatttgtttgaaccaagaaaaagtaatttctgtatcgaatgcttgcgtttatctacttagttggatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="72810" stop="74073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73110" g_stop="73773" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E268434" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73110" e_stop="73773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGACTTTACGGTCGAAAAGGTTTGTGAAAATCTTGATTTGAATAAGCACTGTGGTGGTGAAAGTGATGATCATGATGATGCAGATGTGTGCAGCAAAATTGAGTTGATGGAGGAAAAGGATGAGGTTAAGAAGATTGATGAGTTGCTTGTTGTGAAGGAGAAAGATACCGCGAATGCTGTGGTTGTTGATGAAGTCAAAGTAGGTGAAAATGAGGTGGTTGAGGTAGGAGGTGGGTTGAGTAAAGGGGATGATGAGAAGACGGATAAGATGGCGATGGATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAA-AAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTT</genome_strand>
        <mrna_strand>ATGATGACTTTACGGTCGAAAAGGTTTGTGAAAATCTTGATTTGAATAAGCACTGTGGTGGTGAAAGTGATGATCATGATGATGCAGATGTGTGCAGCAAAATTGAGTTGATGGAGGAAAAGGATGAGGTTAAGAAGATTGATGAGTTGCTTGTTGTGAAGGAGAAAGATACCGCGAATGCTGTGGTTGTTGATGAAGTCAAAGTAGGTGAAAATGAGGTGGTTGAGGTAGGAGGTGGGTTGAGTAAAGGGGATGATGAGAAGACGGATAAGATGGCGATGGATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGACTATGCCCGTGCCAAATGGTATAACCTCATACTCCAAAAAATATGAGCTTTATCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAGAAAAAGTAATTTCTGTATCGAATGCTTGCGTTTATCTACTTAGTTGGATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207671" ref_strand="+" ref_description="SGN-E207671 [cLEC-32-D10]">
      <seq>aggaggtgggttgagtaaaggggatgatgagaagacggataagatggcgatggatgaagatattgatgatgattgggagggaattgagagaagtgaattggaggaggaatttgctaaagctgttaactttgtggatgggggaaatggaaagaatagtggtatggagaatatggggagtgaattgatgatgcaattgtatggactccagaaaattgcaatcgaaggaccttgttacgaacctcaaccaatggcattgaaagtctatgcccgtgccaaatggtataacctcatactccaaaaaatatgagctttagcatattgttttgtactctatttcaattgcattaattttttaaaatgttctttgatttgtttgaaccaaaaaaagtaatttctgtagcgaatgcttgcgtttatctagttagttggatatttgtgattattggattagtagaagcttttgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="73039" stop="74105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73339" g_stop="73805" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E207671" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73339" e_stop="73805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGGTGGGTTGAGTAAAGGGGATGATGAGAAGACGGATAAGATGGCGATGGATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTAGG</genome_strand>
        <mrna_strand>AGGAGGTGGGTTGAGTAAAGGGGATGATGAGAAGACGGATAAGATGGCGATGGATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719239" ref_strand="+" ref_description="SGN-E719239 [FC07AG09]">
      <seq>ggataagatggcgatggatgaagatattgatgctgattgggagggaattgagagaagtgaattggaggaggaatttgctaaagctgttaactttgtggatgggggaaatggaaagaatagtggtatggagaatatggggagtgaattgatgatgcaattgtatggactccagaaaattgcaatcgaaggaccttgttacgaacctcaaccaatggcattgaaagtctatgcccgtgccaaatggaatgcgtggcagaaaatgggaagcatgaatcaggaggtggccatggagcagtatattaagcttttgtcagaccatgtccccaattggacacatcatagtaagaatgattgcgaagtagggtcttcagaaactaaaatgcctggagatccagatccaattcctgattcttctaatgatacaggcaaagatgaaaggacacaggaaacgaaccgtgctgcagaaggagataaaggtgaaaaggaataggtatgagaactcaccagcaggcataatgcaggtactgcttcaagaatttcaggtccttgcagctcataacacaacttggttctccctattgttcccttatcagattattatgcatctactctgcatatgtatatagttatttccgctaaataaaaacgacactatatttagagaaacaatgatctccttgtttcaatgactttttattatatgaagtgaatgataatctcattggttattattattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="73075" stop="77222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73375" g_stop="73617" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73618" i_stop="74314" i_length="697">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74315" g_stop="74417" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="346" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74418" i_stop="74509" i_length="92">
            <donor d_prob="0.767" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74510" g_stop="74601" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="438" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74602" i_stop="74720" i_length="119">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74721" g_stop="74766" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="484" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74767" i_stop="76667" i_length="1901">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76668" g_stop="76922" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="739" r_length="255" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E719239" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73375" e_stop="73617"/>
          <exon e_start="74315" e_stop="74417"/>
          <exon e_start="74510" e_stop="74601"/>
          <exon e_start="74721" e_stop="74766"/>
          <exon e_start="76668" e_stop="76922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATAAGATGGCGATGGATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTAGGAGAGGACACAATCAATATATACTAAAGAAGATTAGAAGGAACACTGCTGAAAATGGGGAAGATAAATCACCATCTCACATATAGTTTGATCGACTTTGAGTTTAATCATTCACGATTGAATTCCTTAACGTTGTTGTATGATCTGATCTAAAGTAGCTTTCCCCTTGCATAGTAGAACTAGCATTTATTCTTTACTTTTTTTCATCAGATCTACCGTATCCTGGTTTTACCAGAGAATAGTTTGACCAGAAACTAGAATAGATATCTATAGCCTAAATTTCGTAGTTAAATTGAGAGGACGGAGTCAGGAAACTAAACATGATATTTAGTACATTTATATCATAAGAAACTTGTGTTAGAATTTAGAAAAAGATACCTAGCATAAATTCAATAAGCAGTAAAGGACAGACCTTCAAACTACTTTCGGGTGTAGTTTGATTGCTAGTTATACAACAGGAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAGGTTGTTAAATATTTTCCTAAAAATTTTTTTTGGATAGATTACTGAAAGATTTTCTTGAAACGTTACTCCAAATGGTTGATTTACTGTTGCAGAATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAGGTACTTCTATTTCACTTTCCTCATTATGTCCTCTGAAAGTTCCCACTGTATCGTTTCATTCGACTCTTGATTATTTTTGCTTATCTGCCTTTCTCACTAGCTTTTGCATGTATCTACAGGACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAGGTGATTCATACAATTTTCGGACTTTTGATTCTGTAGTGATGTTCACTTGTTTGGAGAATCCAAAGGATTTATGTTCCATGTTGAAACTTGGCCCTAAACCTGCTGTTGGTTGAATTTCAACTTCAAAGCTAGTAAAATATTCAACGTCGCATTGAACTTTTTATTAATCCTCTTGTTGCCAAAAAAAAATAAAAAAATCACTCCACATGATTGAAATTTCCTTGGGTAATTGCAAGTTAAACGATGCAACTGTTAACATCTAGGACAAGAACATAATGATCTAGTTAATATAAACATTTGCTGTTAATGCTAGATTCTGTGAGGTTTTGTCTCTTAGGTCGGACATCCTTTTAGGAGAATCCTAGTCTAAATTTTTGAGATTTGTCCTTTTGTCTATGAGGAACTTTTATAAGACATACTTTATATAATATCTGTGCTTTAATTGCATCTCAAAGAATATCATTCAAGAACATACTCACTACTTGACACTCTGTTATGTTAAACTCGTGAAGATCAGTCACATCAGTGTAGTTGGCTTCTTGTAACAGAACTATTAATCTTACAATTTGTATCACTCTGCCTAGTTATATGCAGTAATTAAGCCAGTTTACTGTAGACCGGTGCTACATCTTATGATCTCTATTTCCTTTCCTCGAGTAGTTATTTACATTTGACTGTTTACCATTTTCATCTATAGCCTGATAATTGAAGCTTTCTGGAATCTATGACAGCTTAAAAGAGTTGCTTCATTTTTCATTCTAATTCAGGCCTGATAAGTGGAGTTGTTTGAACATAACATAATTTTATAATTGGCTCCTTTTACTCTAGAGGTTTTATCTTTTGAATTCTTTTTAAATATAGGAACCAAGGATGTAAACTATTTATCTGTACTATGACATTACAAATCCATCGATTTATATCTGTTGTATTGATAATAACAGACTCATACAAGCACCCGAGAGAAAACACAAGATCCTGCTTTTGGTTCTGTAGAAGGTTCAGGAAGTAGGATGCTTGAGTTTATGATCTCAAAATCTCTTTCGTTTATTCTGGAAGAATGCTTCTACAACGCTCATCTTTTATACCACTTTATCAATTTTATGCAGGTTTTTGATAATGATAAGTAGTAGCGTTAGCTATTCAATGTCAAATTAATCCCAACTTTAGAGTTAGTAATGGCTCTGGGCCCTTAATATTTTTGGTGTTCAAGAACCATTTCTCCATCGAAATCAGTGTAAAGGAGAATTGGTTCTTGATTCTAGAAAGCCAAAATTACTGTCCACTATGATCCTAAAGACAAGTTTATTAAAAAAACTATGTAGGTGTTAAGGACGAGAACTTATTTTGGTAATTTTGGTCCAGCAAGAATTCAGTTTCTGTATGAAACAGATGTATATGCTTTGCAAGATAATGGCCATATAAAGACTAGGGGTCAAACTTGAGCCAAAGTAGAAGATATAGGATCTTCCCAGATTGTTCAAGTTTAATATGAAGGCTATGAGCATGAGGGTGTGGTTAATAGAAGCGATAGATGTCTTGGTTAATGATTGGACAACATTAAGATGCGAACATTCTCAAAGTTTAAGGGTGACTCGGAAGTTCGATTGAGAAGTATCTTGGGGCCTCTGATGCACTTTTAACTTTACTCCAATGACCTGTTCTTTTCACAACTTCGAATGGAATGTTACCTTATACATGAGCTAATTTCTACTTGGCTTTTATGATTGTTCATTTAGTAGGTATCTGAATGCTTTGTAATTTTCCCTCTTAGAGGTCAGATATGGAATATGTTTATAGTTCTTTAGTAATTCTTATATTGATGTTATGTTTGAATAAATCGATAGATAATTGTAGCAGAGATAAAACTTTGGTTTATAGCGATTTTCATGTGTTTCTTTCAGGAATAGGTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCGTTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGTTATTTCCGCTAAATAAAAACGACACTATATTTAGAGAAACAATGATCTCCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCATTGGTTATTATTATTATT</genome_strand>
        <mrna_strand>GGATAAGATGGCGATGGATGAAGATATTGATGCTGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAG............................................................................................AATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAG.......................................................................................................................GACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAGGTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCCTTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGTTATTTCCGCTAAATAAAAACGACACTATATTTAGAGAAACAATGATCTCCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCATTGGTTATTATTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298762" ref_strand="+" ref_description="SGN-E298762 [cLET-44-E7]">
      <seq>gatgaagatattgatgatgattgggagggaattgagagaactgaattggaggaggaatttgctaaagctgttaactttgtggatgggggaaatggaaagaatagtggtatggagaatatggggagtgaattgatgatgcaattgtatggactccacaaaattgcaatcgaaggaccttgttacgaacctcaaccaatggcattgaaagcctatgcccgtgccaaatggaatgaaagctgctttctgtaagtgatggaggacaataattccattgtgcaccgaatgcgtggcagaaaatgggaagcatgaatcagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="73091" stop="74650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73391" g_stop="73617" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73618" i_stop="74261" i_length="644">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.048" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74262" g_stop="74350" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="316" r_length="89" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E298762" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73391" e_stop="73617"/>
          <exon e_start="74262" e_stop="74350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTAGGAGAGGACACAATCAATATATACTAAAGAAGATTAGAAGGAACACTGCTGAAAATGGGGAAGATAAATCACCATCTCACATATAGTTTGATCGACTTTGAGTTTAATCATTCACGATTGAATTCCTTAACGTTGTTGTATGATCTGATCTAAAGTAGCTTTCCCCTTGCATAGTAGAACTAGCATTTATTCTTTACTTTTTTTCATCAGATCTACCGTATCCTGGTTTTACCAGAGAATAGTTTGACCAGAAACTAGAATAGATATCTATAGCCTAAATTTCGTAGTTAAATTGAGAGGACGGAGTCAGGAAACTAAACATGATATTTAGTACATTTATATCATAAGAAACTTGTGTTAGAATTTAGAAAAAGATACCTAGCATAAATTCAATAAGCAGTAAAGGACAGACCTTCAAACTACTTTCGGGTGTAGTTTGATTGCTAGTTATACAACAGGAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGA</genome_strand>
        <mrna_strand>GATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAACTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCACAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGCCTATGCCCGTGCCAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCACCGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348779" ref_strand="+" ref_description="SGN-E348779 [cTOF-29-G10]">
      <seq>ggaaatggaaagaatagtggtatggagaatatggggagtgaattgatgatgcaattgtatggactccagaaaattgcaatcgaaggaccttgttacgaacctcaaccaatggcattgaaagtctatgcccgtgccaaatggaatgaaagctgctttctgtaagtgatggaggacaataattccattgtgcaaggaatgcgtggcagaaaatgggaagcatgaatcaggaggtggccatggagcagtatattaagcttttgtcagaccatgtccccaattggacacatcatagtaagaatgattgcgaagtagggtcttcagaaactaaaatgcctggagatccagatccaattcctgattcttctaatgatacaggcaaagatgaaaggacacaggaaacgaaccgtgctgcagaaggagataaaggtgaaaaggaataggtatgagaactcaccagcaggcataatgcaggtactgcttcaagaatttcaggtcattgcagctcataacacaacttggttctccctattgttcccttatcagattattatgcatctactctgcatatgtatatagntatttccgctaaataaaaacgacactatatttagagaacaatgatctncttgtttcaatgactttttattatatgaagtgaatgataatctcattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="73178" stop="77209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73478" g_stop="73617" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73618" i_stop="74261" i_length="644">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.048" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74262" g_stop="74417" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="296" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74418" i_stop="74509" i_length="92">
            <donor d_prob="0.767" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74510" g_stop="74601" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="388" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74602" i_stop="74720" i_length="119">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74721" g_stop="74766" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="434" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74767" i_stop="76667" i_length="1901">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76668" g_stop="76909" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="675" r_length="241" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E348779" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73478" e_stop="73617"/>
          <exon e_start="74262" e_stop="74417"/>
          <exon e_start="74510" e_stop="74601"/>
          <exon e_start="74721" e_stop="74766"/>
          <exon e_start="76668" e_stop="76909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTAGGAGAGGACACAATCAATATATACTAAAGAAGATTAGAAGGAACACTGCTGAAAATGGGGAAGATAAATCACCATCTCACATATAGTTTGATCGACTTTGAGTTTAATCATTCACGATTGAATTCCTTAACGTTGTTGTATGATCTGATCTAAAGTAGCTTTCCCCTTGCATAGTAGAACTAGCATTTATTCTTTACTTTTTTTCATCAGATCTACCGTATCCTGGTTTTACCAGAGAATAGTTTGACCAGAAACTAGAATAGATATCTATAGCCTAAATTTCGTAGTTAAATTGAGAGGACGGAGTCAGGAAACTAAACATGATATTTAGTACATTTATATCATAAGAAACTTGTGTTAGAATTTAGAAAAAGATACCTAGCATAAATTCAATAAGCAGTAAAGGACAGACCTTCAAACTACTTTCGGGTGTAGTTTGATTGCTAGTTATACAACAGGAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAGGTTGTTAAATATTTTCCTAAAAATTTTTTTTGGATAGATTACTGAAAGATTTTCTTGAAACGTTACTCCAAATGGTTGATTTACTGTTGCAGAATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAGGTACTTCTATTTCACTTTCCTCATTATGTCCTCTGAAAGTTCCCACTGTATCGTTTCATTCGACTCTTGATTATTTTTGCTTATCTGCCTTTCTCACTAGCTTTTGCATGTATCTACAGGACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAGGTGATTCATACAATTTTCGGACTTTTGATTCTGTAGTGATGTTCACTTGTTTGGAGAATCCAAAGGATTTATGTTCCATGTTGAAACTTGGCCCTAAACCTGCTGTTGGTTGAATTTCAACTTCAAAGCTAGTAAAATATTCAACGTCGCATTGAACTTTTTATTAATCCTCTTGTTGCCAAAAAAAAATAAAAAAATCACTCCACATGATTGAAATTTCCTTGGGTAATTGCAAGTTAAACGATGCAACTGTTAACATCTAGGACAAGAACATAATGATCTAGTTAATATAAACATTTGCTGTTAATGCTAGATTCTGTGAGGTTTTGTCTCTTAGGTCGGACATCCTTTTAGGAGAATCCTAGTCTAAATTTTTGAGATTTGTCCTTTTGTCTATGAGGAACTTTTATAAGACATACTTTATATAATATCTGTGCTTTAATTGCATCTCAAAGAATATCATTCAAGAACATACTCACTACTTGACACTCTGTTATGTTAAACTCGTGAAGATCAGTCACATCAGTGTAGTTGGCTTCTTGTAACAGAACTATTAATCTTACAATTTGTATCACTCTGCCTAGTTATATGCAGTAATTAAGCCAGTTTACTGTAGACCGGTGCTACATCTTATGATCTCTATTTCCTTTCCTCGAGTAGTTATTTACATTTGACTGTTTACCATTTTCATCTATAGCCTGATAATTGAAGCTTTCTGGAATCTATGACAGCTTAAAAGAGTTGCTTCATTTTTCATTCTAATTCAGGCCTGATAAGTGGAGTTGTTTGAACATAACATAATTTTATAATTGGCTCCTTTTACTCTAGAGGTTTTATCTTTTGAATTCTTTTTAAATATAGGAACCAAGGATGTAAACTATTTATCTGTACTATGACATTACAAATCCATCGATTTATATCTGTTGTATTGATAATAACAGACTCATACAAGCACCCGAGAGAAAACACAAGATCCTGCTTTTGGTTCTGTAGAAGGTTCAGGAAGTAGGATGCTTGAGTTTATGATCTCAAAATCTCTTTCGTTTATTCTGGAAGAATGCTTCTACAACGCTCATCTTTTATACCACTTTATCAATTTTATGCAGGTTTTTGATAATGATAAGTAGTAGCGTTAGCTATTCAATGTCAAATTAATCCCAACTTTAGAGTTAGTAATGGCTCTGGGCCCTTAATATTTTTGGTGTTCAAGAACCATTTCTCCATCGAAATCAGTGTAAAGGAGAATTGGTTCTTGATTCTAGAAAGCCAAAATTACTGTCCACTATGATCCTAAAGACAAGTTTATTAAAAAAACTATGTAGGTGTTAAGGACGAGAACTTATTTTGGTAATTTTGGTCCAGCAAGAATTCAGTTTCTGTATGAAACAGATGTATATGCTTTGCAAGATAATGGCCATATAAAGACTAGGGGTCAAACTTGAGCCAAAGTAGAAGATATAGGATCTTCCCAGATTGTTCAAGTTTAATATGAAGGCTATGAGCATGAGGGTGTGGTTAATAGAAGCGATAGATGTCTTGGTTAATGATTGGACAACATTAAGATGCGAACATTCTCAAAGTTTAAGGGTGACTCGGAAGTTCGATTGAGAAGTATCTTGGGGCCTCTGATGCACTTTTAACTTTACTCCAATGACCTGTTCTTTTCACAACTTCGAATGGAATGTTACCTTATACATGAGCTAATTTCTACTTGGCTTTTATGATTGTTCATTTAGTAGGTATCTGAATGCTTTGTAATTTTCCCTCTTAGAGGTCAGATATGGAATATGTTTATAGTTCTTTAGTAATTCTTATATTGATGTTATGTTTGAATAAATCGATAGATAATTGTAGCAGAGATAAAACTTTGGTTTATAGCGATTTTCATGTGTTTCTTTCAGGAATAGGTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCGTTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGTTATTTCCGCTAAATAAAAACGACACTATATTTAGAGAAACAATGATCTCCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCATTGGT</genome_strand>
        <mrna_strand>GGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAG............................................................................................AATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAG.......................................................................................................................GACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAGGTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCATTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGNTATTTCCGCTAAATAAAAACGACACTATATTTAGAG-AACAATGATCTNCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349126" ref_strand="+" ref_description="SGN-E349126 [cTOS-2-B4]">
      <seq>cgaacctcaaccaatggcattgaaagtctatgcccgtgccaaatggaatgaaagctgctttctgtaagtgatggaggacaataattccattgtgcaaggaatgcgtggcagaaaatgggaagcatgaatcaggaggtggccatggagcagtatattaagcttttgtcagaccatgtccccaattggacacatcatagtaagaatgattgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="73273" stop="74723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73573" g_stop="73617" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73618" i_stop="74261" i_length="644">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.048" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74262" g_stop="74417" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="201" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74418" i_stop="74509" i_length="92">
            <donor d_prob="0.767" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74510" g_stop="74519" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="211" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E349126" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73573" e_stop="73617"/>
          <exon e_start="74262" e_stop="74417"/>
          <exon e_start="74510" e_stop="74519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTAGGAGAGGACACAATCAATATATACTAAAGAAGATTAGAAGGAACACTGCTGAAAATGGGGAAGATAAATCACCATCTCACATATAGTTTGATCGACTTTGAGTTTAATCATTCACGATTGAATTCCTTAACGTTGTTGTATGATCTGATCTAAAGTAGCTTTCCCCTTGCATAGTAGAACTAGCATTTATTCTTTACTTTTTTTCATCAGATCTACCGTATCCTGGTTTTACCAGAGAATAGTTTGACCAGAAACTAGAATAGATATCTATAGCCTAAATTTCGTAGTTAAATTGAGAGGACGGAGTCAGGAAACTAAACATGATATTTAGTACATTTATATCATAAGAAACTTGTGTTAGAATTTAGAAAAAGATACCTAGCATAAATTCAATAAGCAGTAAAGGACAGACCTTCAAACTACTTTCGGGTGTAGTTTGATTGCTAGTTATACAACAGGAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAGGTTGTTAAATATTTTCCTAAAAATTTTTTTTGGATAGATTACTGAAAGATTTTCTTGAAACGTTACTCCAAATGGTTGATTTACTGTTGCAGAATGATTGCG</genome_strand>
        <mrna_strand>CGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAG............................................................................................AATGATTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369106" ref_strand="+" ref_description="SGN-E369106 [TUS-23-I4]">
      <seq>aatggtataacctcatactccaaaaaatatgagctttagcatattgttttgtactctatttcaattgcattaattttttaaaatgttctttgatttgtttgaaccaaaaaaagtaatttctgtagcgaatgcttgcgtttatctagttagttggatatttgtgattattggattagtagaagcttttgtaggagaggacacaatcaatatatactaaagaagattagaaggaacactgctgaaaatggggaagataaatcaccatctcacatatagtttgatcgactttgagtttaatcattcacgattgaattccttaacgttgttgtatgatctgatctaaagtagctttccccttgcatagtagaactagcatttattctttactttttttcatcagatctaccgtatcctggttttaccagagaatagtttgaccagaaactagaatagatatctatagcctaaatttcgtagttaaattgagaggacggagtcaggaaactaaacatgatatttagtacatttatatcataagaaacttgtgttagaatttagaaaaagatacctagcataaattcaataagcagtaaaggacagaccttcaaactacttttcggtgtagtttgattgctagttatacaacaggaatgaaagctgctttctgtaagtgatggaggacaataattccattgtgcaaggaatgcgtggcaaaaaatgggaaccatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="73314" stop="74643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73614" g_stop="74343" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E369106" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73614" e_stop="74343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTAGGAGAGGACACAATCAATATATACTAAAGAAGATTAGAAGGAACACTGCTGAAAATGGGGAAGATAAATCACCATCTCACATATAGTTTGATCGACTTTGAGTTTAATCATTCACGATTGAATTCCTTAACGTTGTTGTATGATCTGATCTAAAGTAGCTTTCCCCTTGCATAGTAGAACTAGCATTTATTCTTTACTTTTTTTCATCAGATCTACCGTATCCTGGTTTTACCAGAGAATAGTTTGACCAGAAACTAGAATAGATATCTATAGCCTAAATTTCGTAGTTAAATTGAGAGGACGGAGTCAGGAAACTAAACATGATATTTAGTACATTTATATCATAAGAAACTTGTGTTAGAATTTAGAAAAAGATACCTAGCATAAATTCAATAAGCAGTAAAGGACAGACCTTCAAACTACTTTCGGGTGTAGTTTGATTGCTAGTTATACAACAGGAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGA</genome_strand>
        <mrna_strand>AATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTAGGAGAGGACACAATCAATATATACTAAAGAAGATTAGAAGGAACACTGCTGAAAATGGGGAAGATAAATCACCATCTCACATATAGTTTGATCGACTTTGAGTTTAATCATTCACGATTGAATTCCTTAACGTTGTTGTATGATCTGATCTAAAGTAGCTTTCCCCTTGCATAGTAGAACTAGCATTTATTCTTTACTTTTTTTCATCAGATCTACCGTATCCTGGTTTTACCAGAGAATAGTTTGACCAGAAACTAGAATAGATATCTATAGCCTAAATTTCGTAGTTAAATTGAGAGGACGGAGTCAGGAAACTAAACATGATATTTAGTACATTTATATCATAAGAAACTTGTGTTAGAATTTAGAAAAAGATACCTAGCATAAATTCAATAAGCAGTAAAGGACAGACCTTCAAACTACTTTTCGGTGTAGTTTGATTGCTAGTTATACAACAGGAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAAAAAATGGGAACCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243659" ref_strand="+" ref_description="SGN-E243659 [cLED-34-P9]">
      <seq>aatggtataacctcatactccaaaaaatatgagctttagcatattgttttgtactctatttcaattgcattaattttttaaaatgttctttgatttgtttgaaccaaaaaaagtaatttctgtagcgaatgcttgcgtttatctagttagttggatatttgtgattattggattagtagaagcttttgtaggagaggacacagtcaatatatactaaagaagattagaaggaacactgctgaaaatggggaagataaatcaccatctcacatatagtttgatcgactttgagtttaatcattcacgattgaattccttaacgttgttgtatgatctgatctaaagtagctttccccttgcatagtagaactagcattaattctttactttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="73314" stop="74306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73614" g_stop="74006" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E243659" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73614" e_stop="74006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTAGGAGAGGACACAATCAATATATACTAAAGAAGATTAGAAGGAACACTGCTGAAAATGGGGAAGATAAATCACCATCTCACATATAGTTTGATCGACTTTGAGTTTAATCATTCACGATTGAATTCCTTAACGTTGTTGTATGATCTGATCTAAAGTAGCTTTCCCCTTGCATAGTAGAACTAGCATTTATTCTTTACTTTTTT</genome_strand>
        <mrna_strand>AATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTAGGAGAGGACACAGTCAATATATACTAAAGAAGATTAGAAGGAACACTGCTGAAAATGGGGAAGATAAATCACCATCTCACATATAGTTTGATCGACTTTGAGTTTAATCATTCACGATTGAATTCCTTAACGTTGTTGTATGATCTGATCTAAAGTAGCTTTCCCCTTGCATAGTAGAACTAGCATTAATTCTTTACTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369105" ref_strand="+" ref_description="SGN-E369105 [TUS-23-I4](-)">
      <seq>tcaggaaactaaacatgatatttagtacatttatatcataagaaacttgtgttagaatttagaaaaagatacctagcataaattcaataagcagtaaaggacagaccttcaaactactttcgggtgtagtttgattgctagttatacaacaggaatgaaagctgctttctgtaagtgatggaggacaataattccattgtgcaaggaatgcgtggcagaaaatgggaagcatgaatcaggaggtggccatggagcagtatattaagcttttgtcagaccatgtccccaattggacacatcatagtaagaatgattgcgaagtagggtcttcagaaactaaaatgcctggagatccagatccaattcctgattcttctaatgatacaggcaaagatgaaaggacacaggaaacgaaccgtgctgcagaaggagataaaggtgaaaaggaataggtatgagaactcaccagcaggcataatgcaggtactgcttcaagaatttcaggtccttgcagctcataacacaacttggttctccctattgttcccttatcagattattatgcatctactctgcatatgtatatagttatttccgctaaataaaaacgacactatatttagagaaacaatgatctccttgtttcaatgactttttattatatgaagtgaatgataatctcattggttattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="73810" stop="77225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74110" g_stop="74417" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74418" i_stop="74509" i_length="92">
            <donor d_prob="0.767" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74510" g_stop="74601" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="400" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74602" i_stop="74720" i_length="119">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74721" g_stop="74766" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="446" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74767" i_stop="76667" i_length="1901">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76668" g_stop="76922" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="701" r_length="255" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E369105" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74110" e_stop="74417"/>
          <exon e_start="74510" e_stop="74601"/>
          <exon e_start="74721" e_stop="74766"/>
          <exon e_start="76668" e_stop="76922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGAAACTAAACATGATATTTAGTACATTTATATCATAAGAAACTTGTGTTAGAATTTAGAAAAAGATACCTAGCATAAATTCAATAAGCAGTAAAGGACAGACCTTCAAACTACTTTCGGGTGTAGTTTGATTGCTAGTTATACAACAGGAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAGGTTGTTAAATATTTTCCTAAAAATTTTTTTTGGATAGATTACTGAAAGATTTTCTTGAAACGTTACTCCAAATGGTTGATTTACTGTTGCAGAATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAGGTACTTCTATTTCACTTTCCTCATTATGTCCTCTGAAAGTTCCCACTGTATCGTTTCATTCGACTCTTGATTATTTTTGCTTATCTGCCTTTCTCACTAGCTTTTGCATGTATCTACAGGACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAGGTGATTCATACAATTTTCGGACTTTTGATTCTGTAGTGATGTTCACTTGTTTGGAGAATCCAAAGGATTTATGTTCCATGTTGAAACTTGGCCCTAAACCTGCTGTTGGTTGAATTTCAACTTCAAAGCTAGTAAAATATTCAACGTCGCATTGAACTTTTTATTAATCCTCTTGTTGCCAAAAAAAAATAAAAAAATCACTCCACATGATTGAAATTTCCTTGGGTAATTGCAAGTTAAACGATGCAACTGTTAACATCTAGGACAAGAACATAATGATCTAGTTAATATAAACATTTGCTGTTAATGCTAGATTCTGTGAGGTTTTGTCTCTTAGGTCGGACATCCTTTTAGGAGAATCCTAGTCTAAATTTTTGAGATTTGTCCTTTTGTCTATGAGGAACTTTTATAAGACATACTTTATATAATATCTGTGCTTTAATTGCATCTCAAAGAATATCATTCAAGAACATACTCACTACTTGACACTCTGTTATGTTAAACTCGTGAAGATCAGTCACATCAGTGTAGTTGGCTTCTTGTAACAGAACTATTAATCTTACAATTTGTATCACTCTGCCTAGTTATATGCAGTAATTAAGCCAGTTTACTGTAGACCGGTGCTACATCTTATGATCTCTATTTCCTTTCCTCGAGTAGTTATTTACATTTGACTGTTTACCATTTTCATCTATAGCCTGATAATTGAAGCTTTCTGGAATCTATGACAGCTTAAAAGAGTTGCTTCATTTTTCATTCTAATTCAGGCCTGATAAGTGGAGTTGTTTGAACATAACATAATTTTATAATTGGCTCCTTTTACTCTAGAGGTTTTATCTTTTGAATTCTTTTTAAATATAGGAACCAAGGATGTAAACTATTTATCTGTACTATGACATTACAAATCCATCGATTTATATCTGTTGTATTGATAATAACAGACTCATACAAGCACCCGAGAGAAAACACAAGATCCTGCTTTTGGTTCTGTAGAAGGTTCAGGAAGTAGGATGCTTGAGTTTATGATCTCAAAATCTCTTTCGTTTATTCTGGAAGAATGCTTCTACAACGCTCATCTTTTATACCACTTTATCAATTTTATGCAGGTTTTTGATAATGATAAGTAGTAGCGTTAGCTATTCAATGTCAAATTAATCCCAACTTTAGAGTTAGTAATGGCTCTGGGCCCTTAATATTTTTGGTGTTCAAGAACCATTTCTCCATCGAAATCAGTGTAAAGGAGAATTGGTTCTTGATTCTAGAAAGCCAAAATTACTGTCCACTATGATCCTAAAGACAAGTTTATTAAAAAAACTATGTAGGTGTTAAGGACGAGAACTTATTTTGGTAATTTTGGTCCAGCAAGAATTCAGTTTCTGTATGAAACAGATGTATATGCTTTGCAAGATAATGGCCATATAAAGACTAGGGGTCAAACTTGAGCCAAAGTAGAAGATATAGGATCTTCCCAGATTGTTCAAGTTTAATATGAAGGCTATGAGCATGAGGGTGTGGTTAATAGAAGCGATAGATGTCTTGGTTAATGATTGGACAACATTAAGATGCGAACATTCTCAAAGTTTAAGGGTGACTCGGAAGTTCGATTGAGAAGTATCTTGGGGCCTCTGATGCACTTTTAACTTTACTCCAATGACCTGTTCTTTTCACAACTTCGAATGGAATGTTACCTTATACATGAGCTAATTTCTACTTGGCTTTTATGATTGTTCATTTAGTAGGTATCTGAATGCTTTGTAATTTTCCCTCTTAGAGGTCAGATATGGAATATGTTTATAGTTCTTTAGTAATTCTTATATTGATGTTATGTTTGAATAAATCGATAGATAATTGTAGCAGAGATAAAACTTTGGTTTATAGCGATTTTCATGTGTTTCTTTCAGGAATAGGTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCGTTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGTTATTTCCGCTAAATAAAAACGACACTATATTTAGAGAAACAATGATCTCCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCATTGGTTATTATTATTATT</genome_strand>
        <mrna_strand>TCAGGAAACTAAACATGATATTTAGTACATTTATATCATAAGAAACTTGTGTTAGAATTTAGAAAAAGATACCTAGCATAAATTCAATAAGCAGTAAAGGACAGACCTTCAAACTACTTTCGGGTGTAGTTTGATTGCTAGTTATACAACAGGAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAG............................................................................................AATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAG.......................................................................................................................GACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAGGTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCCTTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGTTATTTCCGCTAAATAAAAACGACACTATATTTAGAGAAACAATGATCTCCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCATTGGTTATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574101" ref_strand="-" ref_description="SGN-E574101 [33516]">
      <seq>ggacacatccatagtaaggatgattgtgaagtaggttcttcagaaactaaattgcatggagatccagatcccgtttcagattcttctaatgatacaggcaaagatgaaagggcacatgaaatgaaccgtgctgcagaaggagatgaaggtgaaaaggaataagaatgagaagaactcaccagcaggcatactgcaagatctgcttcaagaatttgaggtccttgcagctcataacacaacttggttctccctaatgttcccttatcagattattatgcatctactctgcatatgtatatagttatttccgccaaataaaaacgacactatatttagataaacaatgatctccttgtttcagtgactttctattatatgaagtgaataataatctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="74208" stop="77206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74401" g_stop="74417" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74418" i_stop="74509" i_length="92">
            <donor d_prob="0.767" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74510" g_stop="74601" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="110" r_length="92" r_score="0.902"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74602" i_stop="74720" i_length="119">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74721" g_stop="74766" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="156" r_length="46" r_score="0.913"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74767" i_stop="75627" i_length="861">
            <donor d_prob="0.998" d_score="0.91"/>
            <acceptor a_prob="0.511" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75628" g_stop="75638" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="166" r_length="10" r_score="0.727"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75639" i_stop="76673" i_length="1035">
            <donor d_prob="0.085" d_score="0.00"/>
            <acceptor a_prob="0.893" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76674" g_stop="76905" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="397" r_length="231" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E574101" ref_strand="-">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574101" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74401" e_stop="74417"/>
          <exon e_start="74510" e_stop="74601"/>
          <exon e_start="74721" e_stop="74766"/>
          <exon e_start="75628" e_stop="75638"/>
          <exon e_start="76674" e_stop="76905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACACAT-CATAGTAAGGTTGTTAAATATTTTCCTAAAAATTTTTTTTGGATAGATTACTGAAAGATTTTCTTGAAACGTTACTCCAAATGGTTGATTTACTGTTGCAGAATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAGGTACTTCTATTTCACTTTCCTCATTATGTCCTCTGAAAGTTCCCACTGTATCGTTTCATTCGACTCTTGATTATTTTTGCTTATCTGCCTTTCTCACTAGCTTTTGCATGTATCTACAGGACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAGGTGATTCATACAATTTTCGGACTTTTGATTCTGTAGTGATGTTCACTTGTTTGGAGAATCCAAAGGATTTATGTTCCATGTTGAAACTTGGCCCTAAACCTGCTGTTGGTTGAATTTCAACTTCAAAGCTAGTAAAATATTCAACGTCGCATTGAACTTTTTATTAATCCTCTTGTTGCCAAAAAAAAATAAAAAAATCACTCCACATGATTGAAATTTCCTTGGGTAATTGCAAGTTAAACGATGCAACTGTTAACATCTAGGACAAGAACATAATGATCTAGTTAATATAAACATTTGCTGTTAATGCTAGATTCTGTGAGGTTTTGTCTCTTAGGTCGGACATCCTTTTAGGAGAATCCTAGTCTAAATTTTTGAGATTTGTCCTTTTGTCTATGAGGAACTTTTATAAGACATACTTTATATAATATCTGTGCTTTAATTGCATCTCAAAGAATATCATTCAAGAACATACTCACTACTTGACACTCTGTTATGTTAAACTCGTGAAGATCAGTCACATCAGTGTAGTTGGCTTCTTGTAACAGAACTATTAATCTTACAATTTGTATCACTCTGCCTAGTTATATGCAGTAATTAAGCCAGTTTACTGTAGACCGGTGCTACATCTTATGATCTCTATTTCCTTTCCTCGAGTAGTTATTTACATTTGACTGTTTACCATTTTCATCTATAGCCTGATAATTGAAGCTTTCTGGAATCTATGACAGCTTAAAAGAGTTGCTTCATTTTTCATTCTAATTCAGGCCTGATAAGTGGAGTTGTTTGAACATAACATAATTTTATAATTGGCTCCTTTTACTCTAGAGGTTTTATCTTTTGAATTCTTTTTAAATATAGGAACCAAGGATGTAAACTATTTATCTGTACTATGACATTACAAATCCATCGATTTATATCTGTTGTATTGATAATAACAGACTCATACAAGCACCCGAGAGAAAACACAAGATCCTGCTTTTGGTTCTGTAGAAGGTTCAGGAAGTAGGATGCTTGAGTTTATGATCTCAAAATCTCTTTCGTTTATTCTGGAAGAATGCTTCTACAACGCTCATCTTTTATACCACTTTATCAATTTTATGCAGGTTTTTGATAATGATAAGTAGTAGCGTTAGCTATTCAATGTCAAATTAATCCCAACTTTAGAGTTAGTAATGGCTCTGGGCCCTTAATATTTTTGGTGTTCAAGAACCATTTCTCCATCGAAATCAGTGTAAAGGAGAATTGGTTCTTGATTCTAGAAAGCCAAAATTACTGTCCACTATGATCCTAAAGACAAGTTTATTAAAAAAACTATGTAGGTGTTAAGGACGAGAACTTATTTTGGTAATTTTGGTCCAGCAAGAATTCAGTTTCTGTATGAAACAGATGTATATGCTTTGCAAGATAATGGCCATATAAAGACTAGGGGTCAAACTTGAGCCAAAGTAGAAGATATAGGATCTTCCCAGATTGTTCAAGTTTAATATGAAGGCTATGAGCATGAGGGTGTGGTTAATAGAAGCGATAGATGTCTTGGTTAATGATTGGACAACATTAAGATGCGAACATTCTCAAAGTTTAAGGGTGACTCGGAAGTTCGATTGAGAAGTATCTTGGGGCCTCTGATGCACTTTTAACTTTACTCCAATGACCTGTTCTTTTCACAACTTCGAATGGAATGTTACCTTATACATGAGCTAATTTCTACTTGGCTTTTATGATTGTTCATTTAGTAGGTATCTGAATGCTTTGTAATTTTCCCTCTTAGAGGTCAGATATGGAATATGTTTATAGTTCTTTAGTAATTCTTATATTGATGTTATGTTTGAATAAATCGATAGATAATTGTAGCAGAGATAAAACTTTGGTTTATAGCGATTTTCATGTGTTTCTTTCAGGAATAGGTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCGTTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGTTATTTCCGCTAAATAAAAACGACACTATATTTAGAGAAACAATGATCTCCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCAT</genome_strand>
        <mrna_strand>GGACACATCCATAGTAAG............................................................................................GATGATTGTGAAGTAGGTTCTTCAGAAACTAAATTGCATGGAGATCCAGATCCCGTTTCAGATTCTTCTAATGATACAGGCAAAGATGAAAG.......................................................................................................................GGCACATGAAATGAACCGTGCTGCAGAAGGAGATGAAGGTGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-TAAGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AGAAGAACTCACCAGCAGGCATACTGCAAGATCTGCTTCAAGAATTTGAGGTCCTTGCAGCTCATAACACAACTTGGTTCTCCCTAATGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGTTATTTCCGCCAAATAAAAACGACACTATATTTAGATAAACAATGATCTCCTTGTTTCAGTGACTTTCTATTATATGAAGTGAATAATAATCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222478" ref_strand="+" ref_description="SGN-E222478 [cLEL-16-N19](-)">
      <seq>ggcacgagattccccaagtgtctgcagggaggaggaactaagaaggaacaatactggtatctcatgtaaaataaggacaatctttactactaaagttagtttaccttacacaattgtaagcaacaaagtaggtccagacccataaaggatataataataataataaccaatgagattatcattcccttcatataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="77368" stop="70090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77074" g_stop="76865" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E222478" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77074" e_stop="76865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTAATATTCCACAAGTGTCTGCAGGGAGGAGGAACTAAGAAGGAACAATACTGGTATCTCATGTAAAATAAGGACAATCTTTACTACTAAAGTTAGTTTACCTTACACAATTGTAAGCAACAAAGTAGGTCCAGAACCATAAAGGATATAATAATAATAATAACCAATGAGATTATCATTCACTTCATATAATAAAAAGTCATTGAA</genome_strand>
        <mrna_strand>GGCACGAGATTCCCCAAGTGTCTGCAGGGAGGAGGAACTAAGAAGGAACAATACTGGTATCTCATGTAAAATAAGGACAATCTTTACTACTAAAGTTAGTTTACCTTACACAATTGTAAGCAACAAAGTAGGTCCAGACCCATAAAGGATATAATAATAATAATAACCAATGAGATTATCATTCCCTTCATATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222408" ref_strand="+" ref_description="SGN-E222408 [cLEL-16-N21](-)">
      <seq>ggcacgagattccacaagtgtctgcagggaggaggaactaagaaggaacaatactggtatctcatgtaaaataaggacaatctttactactaaagttagtttaccttacacaattgtaagcaacaaagtaggtccagaaccataaaggatataataataataataaccaatgagattatcattcccttcatataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="77368" stop="70090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77074" g_stop="76865" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E222408" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77074" e_stop="76865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTAATATTCCACAAGTGTCTGCAGGGAGGAGGAACTAAGAAGGAACAATACTGGTATCTCATGTAAAATAAGGACAATCTTTACTACTAAAGTTAGTTTACCTTACACAATTGTAAGCAACAAAGTAGGTCCAGAACCATAAAGGATATAATAATAATAATAACCAATGAGATTATCATTCACTTCATATAATAAAAAGTCATTGAA</genome_strand>
        <mrna_strand>GGCACGAGATTCCACAAGTGTCTGCAGGGAGGAGGAACTAAGAAGGAACAATACTGGTATCTCATGTAAAATAAGGACAATCTTTACTACTAAAGTTAGTTTACCTTACACAATTGTAAGCAACAAAGTAGGTCCAGAACCATAAAGGATATAATAATAATAATAACCAATGAGATTATCATTCCCTTCATATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222569" ref_strand="+" ref_description="SGN-E222569 [cLEL-16-N19](-)">
      <seq>ggcacgagattccacaagtgtctgcagggaggaggaactaagaaggaacaatactggtatctcatgtaaaataaggacaatctttactactaaagttagtttaccttacacaattgtaagcaacaaagtaggtccagaaccataaaggatataataataataataaccaatgagattatcattcccttcatataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="77368" stop="70090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77074" g_stop="76865" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E222569" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77074" e_stop="76865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTAATATTCCACAAGTGTCTGCAGGGAGGAGGAACTAAGAAGGAACAATACTGGTATCTCATGTAAAATAAGGACAATCTTTACTACTAAAGTTAGTTTACCTTACACAATTGTAAGCAACAAAGTAGGTCCAGAACCATAAAGGATATAATAATAATAATAACCAATGAGATTATCATTCACTTCATATAATAAAAAGTCATTGAA</genome_strand>
        <mrna_strand>GGCACGAGATTCCACAAGTGTCTGCAGGGAGGAGGAACTAAGAAGGAACAATACTGGTATCTCATGTAAAATAAGGACAATCTTTACTACTAAAGTTAGTTTACCTTACACAATTGTAAGCAACAAAGTAGGTCCAGAACCATAAAGGATATAATAATAATAATAACCAATGAGATTATCATTCCCTTCATATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744672" ref_strand="+" ref_description="SGN-E744672 [GI|1771159]">
      <seq>ctagcattacatatcatagtcagttagagcctatcactcaaaactccagcccatctccaccacaggaggaaaaaaaaaaaagcttttcttttcagtagagatttaactttcaccttcgacactaagaactcacataaagatggaaagactcaggctcatgtttcttttaatactaatggtagtgttgtttcatgtgtttgttgatgcaagacagaaccagaagaagacttatataattcacatggacaagttcaacatgcctgctgattttgatgatcatactcagtggtatgactcatcattgaagtcagtatccaagagcgccaacatgctttacacctacaacagtgtcatccatggctactcaacacagctaacagctgatgaagccaaagcacttgcacagcaaccgggaattctcttggtccacgaggaagtgatatacgagcttcacaccactcgatcccctacgtttctgggacttgaaggacgtgaaagtagatcattctttcctcagactgaagcaaggagtgaggtcattattggtgtgctggacacaggtgtttggcctgaatcaaaaagttttgatgacactggactaggtcaagtccctgcgagctggaagggtaagtgtcaaactggcaagaacttcgacgcatcaagctgtaatcggaaacttattggtgcgaggtttttctcacaaggttatgaagcagcttttggggcaatcgatgagaccattgaatccaagtcaccaagggacgatgaaggccatggcacacacactgcaactacagcagctggctcggttgtaaccggagctagcctcttgggttatgcaactggtacagcacgtgggatggcttcacacgcaagggtggcagcgtacaaggtatgttggaccggaggatgttttagcagcgacatactggcagggatggaccaggctgtcatagatggtgtaaatgtgctctcactgtcccttggtggcacaatttctgattatcatagggacatagttgcaatcggagcattttctgcagcatctcaagggatctttgtctcatgctcagcggggaatggtggtccaagctctgggacgctatccaacgttgcaccatggataactactgtaggtgctggaaccatggaccgtgaatttccagcatacattggcattggaaatgggaaaaaactcaatggagtatcactttacagtggaaaggcattgcctagttctgtgatgccactggtgtatgctggaaatgtcagccaatcatctaatggaaatttatgcaccagtggtagtctaattccagaaaaagttgctggaaaaattgtcgtctgtgaccgggggatgaatgcaagggcacaaaagggtttggttgtgaaggatgctggtggaatagggatgattctggcaaacacagacacttacggagatgagttggttgctgatgcacacctcatacctacagctgcagttggtcaaactgcgggcaacttgatcaagcagtacatagcttctaacagcaatccaactgccacaattgcatttggaggaaccaagttgggtgttcaaccatcgccagttgttgcagcttttagttccagagggccaaacccaatcacaccagatgtactcaaacctgatttgatagcaccaggtgtcaatattcttgctggctggacagggaaagttggaccaactggcttgcaagaagacaccaggaatgtaggcttcaacatcatctctggaacttccatgtcatgtccccatgtaagtgggctagcagcactactcaaagctgcccatccagaatggagtccagcagctataaggtcagcactgatgactacaagttatagcacatacaaaaacggaaaaacaatcgaggatgttgcaacaggaatgtcatctacaccatttgattatggtgctggacatgtgaatccaacagcagctgtcagtcctggtttagtgtatgatctaacagttgatgactatataaactttctatgtgccttggactacagcccgagtatgatcaaggtcattgcaaaaagagacatctcctgtgacgaaaataaggagtatagagttgctgatcttaattacccatctttttccattcctatggaaacggcctggggtgaacatgcagatagtagtacccccaccgtgaccagatacacaaggactctaacaaatgtgggaaacccagctacatacaaggcctcagtctcttctgaaacacaggacgtgaagattctggttgagccacaaacacttactttcagccgaaagaacgaaaagaaaacctacactgtgacattcactgctacttccaagccatcaggcacaaccagcttcgctcgactggagtggtcagatggacaacacgttgttgcaagcccaattgctttcagctggacatgattctgctagttctaagtcattcaccacaaatgtacaagtgctaatagtcctttttaaataattactagtgtgcagcagttactcctctaatatttcaccaactgaacaagtatcctgacctataattaagaagcctaggcaattctaggcaatgttggttgatttgcccagcaaaaggctggtgctgtatttgccagatataattatgtactgaaccacacaatacaggtggatattatttggcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="82541" stop="85830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82841" g_stop="85529" g_length="2689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2689" r_length="2689" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E744672" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82841" e_stop="85529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCATTACATATCATAGTCAGTTAGAGCCTATCACTCAAAACTCCAGCCCATCTCCACCACAGGAGGAAAAAAAAAAAAGCTTTTCTTTTCAGTAGAGATTTAACTTTCACCTTCGACACTAAGAACTCACATAAAGATGGAAAGACTCAGGCTCATGTTTCTTTTAATACTAATGGTAGTGTTGTTTCATGTGTTTGTTGATGCAAGACAGAACCAGAAGAAGACTTATATAATTCACATGGACAAGTTCAACATGCCTGCTGATTTTGATGATCATACTCAGTGGTATGACTCATCATTGAAGTCAGTATCCAAGAGCGCCAACATGCTTTACACCTACAACAGTGTCATCCATGGCTACTCAACACAGCTAACAGCTGATGAAGCCAAAGCACTTGCACAGCAACCGGGAATTCTCTTGGTCCACGAGGAAGTGATATACGAGCTTCACACCACTCGATCCCCTACGTTTCTGGGACTTGAAGGACGTGAAAGTAGATCATTCTTTCCTCAGACTGAAGCAAGGAGTGAGGTCATTATTGGTGTGCTGGACACAGGTGTTTGGCCTGAATCAAAAAGTTTTGATGACACTGGACTAGGTCCAGTCCCTGCGAGCTGGAAGGGTAAGTGTCAAACTGGCAAGAACTTCGACGCATCAAGCTGTAATCGGAAACTTATTGGTGCGAGGTTTTTCTCACAAGGTTATGAAGCAGCTTTTGGGGCAATCGATGAGACCATTGAATCCAAGTCACCAAGGGACGATGAAGGCCATGGCACACACACTGCAACTACAGCAGCTGGCTCGGTTGTAACCGGAGCTAGCCTCTTGGGTTATGCAACTGGTACAGCACGTGGGATGGCTTCACACGCAAGGGTGGCAGCGTACAAGGTATGTTGGACCGGAGGATGTTTTAGCAGCGACATACTGGCAGGGATGGACCAGGCTGTCATAGATGGTGTAAATGTGCTCTCACTGTCCCTTGGTGGCACAATTTCTGATTATCATAGGGACATAGTTGCAATCGGAGCATTTTCTGCAGCATCTCAAGGGATCTTTGTCTCATGCTCAGCGGGGAATGGTGGTCCAAGCTCTGGGACGCTATCCAACGTTGCACCATGGATAACTACTGTAGGTGCTGGAACCATGGACCGTGAATTTCCAGCATACATTGGCATTGGAAATGGGAAAAAACTCAATGGAGTATCACTTTACAGTGGAAAGGCATTGCCTAGTTCTGTGATGCCACTGGTGTATGCTGGAAATGTCAGCCAATCATCTAATGGAAATTTATGCACCAGTGGTAGTCTAATTCCAGAAAAAGTTGCTGGAAAAATTGTCGTCTGTGACCGGGGGATGAATGCAAGGGCACAAAAGGGTTTGGTTGTGAAGGATGCTGGTGGAATAGGGATGATTCTGGCAAACACAGACACTTACGGAGATGAGTTGGTTGCTGATGCACACCTCATACCTACAGCTGCAGTTGGTCAAACTGCGGGCAACTTGATCAAGCAGTACATAGCTTCTAACAGCAATCCAACTGCCACAATTGCATTTGGAGGAACCAAGTTGGGTGTTCAACCATCGCCAGTTGTTGCAGCTTTTAGTTCCAGAGGGCCAAACCCAATCACACCAGATGTACTCAAACCTGATTTGATAGCACCAGGTGTCAATATTCTTGCTGGCTGGACAGGGAAAGTTGGACCAACTGGCTTGCAAGAAGACACCAGGAATGTAGGCTTCAACATCATCTCTGGAACTTCCATGTCATGTCCCCATGTAAGTGGGCTAGCAGCACTACTCAAAGCTACCCATCCAGAATGGAGTCCAGCAGCTATAAGGTCAGCACTGATGACTACAAGTTATAGCACATACAAAAACGGAAAAACAATCGAGGATGTTGCAACAGGAATGTCATCTACACCATTTGATTATGGTGCTGGACATGTGAATCCAACAGCAGCTGTCAGTCCTGGTTTAGTGTATGATCTAACAGTTGATGACTATATAAACTTTCTATGTGCCTTGGACTACAGCCCGAGTATGATCAAGGTCATTGCAAAAAGAGACATCTCCTGTGACGAAAATAAGGAGTATAGAGTTGCTGATCTTAATTACCCATCTTTTTCCATTCCTATGGAAACGGCCTGGGGTGAACATGCAGATAGTAGTACCCCCACCGTGACCAGATACACAAGGACTCTAACAAATGTGGGAAACCCAGCTACATACAAGGCCTCAGTCTCTTCTGAAACACAGGACGTGAAGATTCTGGTTGAGCCACAAACACTTACTTTCAGCCGAAAGAACGAAAAGAAAACCTACACTGTGACATTCACTGCTACTTCCAAGCCATCAGGCACAACCAGCTTCGCTCGACTGGAGTGGTCAGATGGACAACACGTTGTTGCAAGCCCAATTGCTTTCAGCTGGACATGATTCTGCTAGTTCTAAGTCATTCACCACAAATGTACAAGTGCTAATAGTCCTTTTTAAATAATTACTAGTGTGCAGCAGTTACTCCTCTAATATTTCACCAACTGAACAAGTATCCTGACCTATAATTAAGAAGCCTAGGCAATTCTAGGCAATGTTGGTTGATTTGCCCAGCAAAAGGCTGGTGCTGTATTTGCCAGATATAATTATGTACTGAACCACACAATACAGGTGGATATTATTTGGCTTTAT</genome_strand>
        <mrna_strand>CTAGCATTACATATCATAGTCAGTTAGAGCCTATCACTCAAAACTCCAGCCCATCTCCACCACAGGAGGAAAAAAAAAAAAGCTTTTCTTTTCAGTAGAGATTTAACTTTCACCTTCGACACTAAGAACTCACATAAAGATGGAAAGACTCAGGCTCATGTTTCTTTTAATACTAATGGTAGTGTTGTTTCATGTGTTTGTTGATGCAAGACAGAACCAGAAGAAGACTTATATAATTCACATGGACAAGTTCAACATGCCTGCTGATTTTGATGATCATACTCAGTGGTATGACTCATCATTGAAGTCAGTATCCAAGAGCGCCAACATGCTTTACACCTACAACAGTGTCATCCATGGCTACTCAACACAGCTAACAGCTGATGAAGCCAAAGCACTTGCACAGCAACCGGGAATTCTCTTGGTCCACGAGGAAGTGATATACGAGCTTCACACCACTCGATCCCCTACGTTTCTGGGACTTGAAGGACGTGAAAGTAGATCATTCTTTCCTCAGACTGAAGCAAGGAGTGAGGTCATTATTGGTGTGCTGGACACAGGTGTTTGGCCTGAATCAAAAAGTTTTGATGACACTGGACTAGGTCAAGTCCCTGCGAGCTGGAAGGGTAAGTGTCAAACTGGCAAGAACTTCGACGCATCAAGCTGTAATCGGAAACTTATTGGTGCGAGGTTTTTCTCACAAGGTTATGAAGCAGCTTTTGGGGCAATCGATGAGACCATTGAATCCAAGTCACCAAGGGACGATGAAGGCCATGGCACACACACTGCAACTACAGCAGCTGGCTCGGTTGTAACCGGAGCTAGCCTCTTGGGTTATGCAACTGGTACAGCACGTGGGATGGCTTCACACGCAAGGGTGGCAGCGTACAAGGTATGTTGGACCGGAGGATGTTTTAGCAGCGACATACTGGCAGGGATGGACCAGGCTGTCATAGATGGTGTAAATGTGCTCTCACTGTCCCTTGGTGGCACAATTTCTGATTATCATAGGGACATAGTTGCAATCGGAGCATTTTCTGCAGCATCTCAAGGGATCTTTGTCTCATGCTCAGCGGGGAATGGTGGTCCAAGCTCTGGGACGCTATCCAACGTTGCACCATGGATAACTACTGTAGGTGCTGGAACCATGGACCGTGAATTTCCAGCATACATTGGCATTGGAAATGGGAAAAAACTCAATGGAGTATCACTTTACAGTGGAAAGGCATTGCCTAGTTCTGTGATGCCACTGGTGTATGCTGGAAATGTCAGCCAATCATCTAATGGAAATTTATGCACCAGTGGTAGTCTAATTCCAGAAAAAGTTGCTGGAAAAATTGTCGTCTGTGACCGGGGGATGAATGCAAGGGCACAAAAGGGTTTGGTTGTGAAGGATGCTGGTGGAATAGGGATGATTCTGGCAAACACAGACACTTACGGAGATGAGTTGGTTGCTGATGCACACCTCATACCTACAGCTGCAGTTGGTCAAACTGCGGGCAACTTGATCAAGCAGTACATAGCTTCTAACAGCAATCCAACTGCCACAATTGCATTTGGAGGAACCAAGTTGGGTGTTCAACCATCGCCAGTTGTTGCAGCTTTTAGTTCCAGAGGGCCAAACCCAATCACACCAGATGTACTCAAACCTGATTTGATAGCACCAGGTGTCAATATTCTTGCTGGCTGGACAGGGAAAGTTGGACCAACTGGCTTGCAAGAAGACACCAGGAATGTAGGCTTCAACATCATCTCTGGAACTTCCATGTCATGTCCCCATGTAAGTGGGCTAGCAGCACTACTCAAAGCTGCCCATCCAGAATGGAGTCCAGCAGCTATAAGGTCAGCACTGATGACTACAAGTTATAGCACATACAAAAACGGAAAAACAATCGAGGATGTTGCAACAGGAATGTCATCTACACCATTTGATTATGGTGCTGGACATGTGAATCCAACAGCAGCTGTCAGTCCTGGTTTAGTGTATGATCTAACAGTTGATGACTATATAAACTTTCTATGTGCCTTGGACTACAGCCCGAGTATGATCAAGGTCATTGCAAAAAGAGACATCTCCTGTGACGAAAATAAGGAGTATAGAGTTGCTGATCTTAATTACCCATCTTTTTCCATTCCTATGGAAACGGCCTGGGGTGAACATGCAGATAGTAGTACCCCCACCGTGACCAGATACACAAGGACTCTAACAAATGTGGGAAACCCAGCTACATACAAGGCCTCAGTCTCTTCTGAAACACAGGACGTGAAGATTCTGGTTGAGCCACAAACACTTACTTTCAGCCGAAAGAACGAAAAGAAAACCTACACTGTGACATTCACTGCTACTTCCAAGCCATCAGGCACAACCAGCTTCGCTCGACTGGAGTGGTCAGATGGACAACACGTTGTTGCAAGCCCAATTGCTTTCAGCTGGACATGATTCTGCTAGTTCTAAGTCATTCACCACAAATGTACAAGTGCTAATAGTCCTTTTTAAATAATTACTAGTGTGCAGCAGTTACTCCTCTAATATTTCACCAACTGAACAAGTATCCTGACCTATAATTAAGAAGCCTAGGCAATTCTAGGCAATGTTGGTTGATTTGCCCAGCAAAAGGCTGGTGCTGTATTTGCCAGATATAATTATGTACTGAACCACACAATACAGGTGGATATTATTTGGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740312" ref_strand="+" ref_description="SGN-E740312 [LC20DG01]">
      <seq>ctctggctcatgtttcttttaatactaatggtagtgttgtttcatgtgtttgttgatgcaagacagaaccagaagaagacttatataattcacatggataagttcaacatgcctgctgattttgatgatcatactcagtggtatgactcctcattgaagtcagtatccaagagcgccaacatgctttacacctacaacagtgtcatccatggctactcaacacagctaacagctgatgaagccaaagcacttgcacagcaaccgggaattctctcggtccacgaggaagtgatatacgagcttcacaccactcgatcccctacgtttctgggacttgaaggacgtgaaagtagatcattctttcctcagactgaagcaaggagtgaggtcattattggtgtgctggacacaggtgtttggcctgaatcaaaaagttttgatgacactggactaggtccagtccctgcgagctggaagggtaagtgtcaaactggcaagaatttcgacgcatcaagctgtaatcggaaacttattggtgcgaggtttttctcacaaggttatgaagcagcttttggggcaatcgatgagaccatcgaatccaagtcaccaagggacgatgaaggccatggcacacacactgcaactacagcagctggctcggttgtaaccggagctagcctcttgggttatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="82689" stop="83981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82989" g_stop="83681" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E740312" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82989" e_stop="83681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGCTCATGTTTCTTTTAATACTAATGGTAGTGTTGTTTCATGTGTTTGTTGATGCAAGACAGAACCAGAAGAAGACTTATATAATTCACATGGACAAGTTCAACATGCCTGCTGATTTTGATGATCATACTCAGTGGTATGACTCATCATTGAAGTCAGTATCCAAGAGCGCCAACATGCTTTACACCTACAACAGTGTCATCCATGGCTACTCAACACAGCTAACAGCTGATGAAGCCAAAGCACTTGCACAGCAACCGGGAATTCTCTTGGTCCACGAGGAAGTGATATACGAGCTTCACACCACTCGATCCCCTACGTTTCTGGGACTTGAAGGACGTGAAAGTAGATCATTCTTTCCTCAGACTGAAGCAAGGAGTGAGGTCATTATTGGTGTGCTGGACACAGGTGTTTGGCCTGAATCAAAAAGTTTTGATGACACTGGACTAGGTCCAGTCCCTGCGAGCTGGAAGGGTAAGTGTCAAACTGGCAAGAACTTCGACGCATCAAGCTGTAATCGGAAACTTATTGGTGCGAGGTTTTTCTCACAAGGTTATGAAGCAGCTTTTGGGGCAATCGATGAGACCATTGAATCCAAGTCACCAAGGGACGATGAAGGCCATGGCACACACACTGCAACTACAGCAGCTGGCTCGGTTGTAACCGGAGCTAGCCTCTTGGGTTATGCA</genome_strand>
        <mrna_strand>CTCTGGCTCATGTTTCTTTTAATACTAATGGTAGTGTTGTTTCATGTGTTTGTTGATGCAAGACAGAACCAGAAGAAGACTTATATAATTCACATGGATAAGTTCAACATGCCTGCTGATTTTGATGATCATACTCAGTGGTATGACTCCTCATTGAAGTCAGTATCCAAGAGCGCCAACATGCTTTACACCTACAACAGTGTCATCCATGGCTACTCAACACAGCTAACAGCTGATGAAGCCAAAGCACTTGCACAGCAACCGGGAATTCTCTCGGTCCACGAGGAAGTGATATACGAGCTTCACACCACTCGATCCCCTACGTTTCTGGGACTTGAAGGACGTGAAAGTAGATCATTCTTTCCTCAGACTGAAGCAAGGAGTGAGGTCATTATTGGTGTGCTGGACACAGGTGTTTGGCCTGAATCAAAAAGTTTTGATGACACTGGACTAGGTCCAGTCCCTGCGAGCTGGAAGGGTAAGTGTCAAACTGGCAAGAATTTCGACGCATCAAGCTGTAATCGGAAACTTATTGGTGCGAGGTTTTTCTCACAAGGTTATGAAGCAGCTTTTGGGGCAATCGATGAGACCATCGAATCCAAGTCACCAAGGGACGATGAAGGCCATGGCACACACACTGCAACTACAGCAGCTGGCTCGGTTGTAACCGGAGCTAGCCTCTTGGGTTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740714" ref_strand="+" ref_description="SGN-E740714 [LC22CC11]">
      <seq>ctcaggctcatgtttcttttaatactaatggtagtgttgtttcatgtgtttgttgatgcaagacagaaccagaagaagacttatataattcacatggataagttcaacatgcctgctgattttgatgatcatactcagtggtatgactcctcattgaagtcagtatccaagagcgccaacatgctttacacctacaacagtgtcatccatggctactcaacacagctaacagctgatgaagccaaagcacttgcacagcaaccgggaattctctcggtccacgaggaagtgatatacgagcttcacaccactcgatcccctacgtttctgggacttgaaggacgtgaaagtagatcattctttcctcagactgaagcaaggagtgaggtcattattggtgtgctggacacaggtgtttggcctgaatcaaaaagttttgatgacactggactaggtccagtccctgcgagctggaagggtaagtgtcaaactggcaagaatttcgacgcatcaagctgtaatcggaaacttattggtgcgaggtttttctcacaaggttatgaagcagcttttggggcaatcgatgagaccatcgaatccaagtcaccaagggacgatgaaggccatggcacacacactgcaactacagcagctggctcggttgtaaccggagctagcctcttgggttatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="82689" stop="83981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82989" g_stop="83681" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E740714" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82989" e_stop="83681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGCTCATGTTTCTTTTAATACTAATGGTAGTGTTGTTTCATGTGTTTGTTGATGCAAGACAGAACCAGAAGAAGACTTATATAATTCACATGGACAAGTTCAACATGCCTGCTGATTTTGATGATCATACTCAGTGGTATGACTCATCATTGAAGTCAGTATCCAAGAGCGCCAACATGCTTTACACCTACAACAGTGTCATCCATGGCTACTCAACACAGCTAACAGCTGATGAAGCCAAAGCACTTGCACAGCAACCGGGAATTCTCTTGGTCCACGAGGAAGTGATATACGAGCTTCACACCACTCGATCCCCTACGTTTCTGGGACTTGAAGGACGTGAAAGTAGATCATTCTTTCCTCAGACTGAAGCAAGGAGTGAGGTCATTATTGGTGTGCTGGACACAGGTGTTTGGCCTGAATCAAAAAGTTTTGATGACACTGGACTAGGTCCAGTCCCTGCGAGCTGGAAGGGTAAGTGTCAAACTGGCAAGAACTTCGACGCATCAAGCTGTAATCGGAAACTTATTGGTGCGAGGTTTTTCTCACAAGGTTATGAAGCAGCTTTTGGGGCAATCGATGAGACCATTGAATCCAAGTCACCAAGGGACGATGAAGGCCATGGCACACACACTGCAACTACAGCAGCTGGCTCGGTTGTAACCGGAGCTAGCCTCTTGGGTTATGCA</genome_strand>
        <mrna_strand>CTCAGGCTCATGTTTCTTTTAATACTAATGGTAGTGTTGTTTCATGTGTTTGTTGATGCAAGACAGAACCAGAAGAAGACTTATATAATTCACATGGATAAGTTCAACATGCCTGCTGATTTTGATGATCATACTCAGTGGTATGACTCCTCATTGAAGTCAGTATCCAAGAGCGCCAACATGCTTTACACCTACAACAGTGTCATCCATGGCTACTCAACACAGCTAACAGCTGATGAAGCCAAAGCACTTGCACAGCAACCGGGAATTCTCTCGGTCCACGAGGAAGTGATATACGAGCTTCACACCACTCGATCCCCTACGTTTCTGGGACTTGAAGGACGTGAAAGTAGATCATTCTTTCCTCAGACTGAAGCAAGGAGTGAGGTCATTATTGGTGTGCTGGACACAGGTGTTTGGCCTGAATCAAAAAGTTTTGATGACACTGGACTAGGTCCAGTCCCTGCGAGCTGGAAGGGTAAGTGTCAAACTGGCAAGAATTTCGACGCATCAAGCTGTAATCGGAAACTTATTGGTGCGAGGTTTTTCTCACAAGGTTATGAAGCAGCTTTTGGGGCAATCGATGAGACCATCGAATCCAAGTCACCAAGGGACGATGAAGGCCATGGCACACACACTGCAACTACAGCAGCTGGCTCGGTTGTAACCGGAGCTAGCCTCTTGGGTTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487588" ref_strand="+" ref_description="SGN-E487588 [cSTE-26-C19]">
      <seq>agaagacttacataattcacatggacaagttcaacatgcctgctgattttgatgatcatacacagtggtatgactcatcgttgaagtcagtatccaagagtgccaatgtgctttacacctacaacagtgtcatccatggctactcaacacagctaacagctgatgaagccaaagcacttgaacagcaaccaggaattctctcggtccacgaggaagtgatatacgagcttcacaccactcgatcccctacgtttctgggacttgaagggcacaaaagtagatcattctttcctcagactgaagcaaggagtgaggtcattattggtgtgctggacacaggtgtttggcctgaatcgaaaagttttgatgacactggactaggtccagtccctgcgagctggaagggcaagtgtcaaactggcaagaacttcgacgcatcaagctgtaatcggaaactcattggtgcgaggtttttctcacaaggttatgaagcagcttttggggcaatcgatgagaccattgaatccaagtcaccaagggacgatgaaggccatggcacacacactgcaactacagcagcaggctcggttgtcaccggagctagcctcttgggttatgccaccggtacagcacgtgggatggcttcacatgcaagagtggctgcatacaaggtatgttggaccggaggatgttttagcagcgacatactggcagggatggaccaggccgtcatagatggtgtaaatgtgctctcactgtcccttggtggcacaatttctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="82762" stop="84144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83062" g_stop="83844" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="783" r_length="783" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E487588" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83062" e_stop="83844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGACTTATATAATTCACATGGACAAGTTCAACATGCCTGCTGATTTTGATGATCATACTCAGTGGTATGACTCATCATTGAAGTCAGTATCCAAGAGCGCCAACATGCTTTACACCTACAACAGTGTCATCCATGGCTACTCAACACAGCTAACAGCTGATGAAGCCAAAGCACTTGCACAGCAACCGGGAATTCTCTTGGTCCACGAGGAAGTGATATACGAGCTTCACACCACTCGATCCCCTACGTTTCTGGGACTTGAAGGACGTGAAAGTAGATCATTCTTTCCTCAGACTGAAGCAAGGAGTGAGGTCATTATTGGTGTGCTGGACACAGGTGTTTGGCCTGAATCAAAAAGTTTTGATGACACTGGACTAGGTCCAGTCCCTGCGAGCTGGAAGGGTAAGTGTCAAACTGGCAAGAACTTCGACGCATCAAGCTGTAATCGGAAACTTATTGGTGCGAGGTTTTTCTCACAAGGTTATGAAGCAGCTTTTGGGGCAATCGATGAGACCATTGAATCCAAGTCACCAAGGGACGATGAAGGCCATGGCACACACACTGCAACTACAGCAGCTGGCTCGGTTGTAACCGGAGCTAGCCTCTTGGGTTATGCAACTGGTACAGCACGTGGGATGGCTTCACACGCAAGGGTGGCAGCGTACAAGGTATGTTGGACCGGAGGATGTTTTAGCAGCGACATACTGGCAGGGATGGACCAGGCTGTCATAGATGGTGTAAATGTGCTCTCACTGTCCCTTGGTGGCACAATTTCTGATT</genome_strand>
        <mrna_strand>AGAAGACTTACATAATTCACATGGACAAGTTCAACATGCCTGCTGATTTTGATGATCATACACAGTGGTATGACTCATCGTTGAAGTCAGTATCCAAGAGTGCCAATGTGCTTTACACCTACAACAGTGTCATCCATGGCTACTCAACACAGCTAACAGCTGATGAAGCCAAAGCACTTGAACAGCAACCAGGAATTCTCTCGGTCCACGAGGAAGTGATATACGAGCTTCACACCACTCGATCCCCTACGTTTCTGGGACTTGAAGGGCACAAAAGTAGATCATTCTTTCCTCAGACTGAAGCAAGGAGTGAGGTCATTATTGGTGTGCTGGACACAGGTGTTTGGCCTGAATCGAAAAGTTTTGATGACACTGGACTAGGTCCAGTCCCTGCGAGCTGGAAGGGCAAGTGTCAAACTGGCAAGAACTTCGACGCATCAAGCTGTAATCGGAAACTCATTGGTGCGAGGTTTTTCTCACAAGGTTATGAAGCAGCTTTTGGGGCAATCGATGAGACCATTGAATCCAAGTCACCAAGGGACGATGAAGGCCATGGCACACACACTGCAACTACAGCAGCAGGCTCGGTTGTCACCGGAGCTAGCCTCTTGGGTTATGCCACCGGTACAGCACGTGGGATGGCTTCACATGCAAGAGTGGCTGCATACAAGGTATGTTGGACCGGAGGATGTTTTAGCAGCGACATACTGGCAGGGATGGACCAGGCCGTCATAGATGGTGTAAATGTGCTCTCACTGTCCCTTGGTGGCACAATTTCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427585" ref_strand="+" ref_description="SGN-E427585 [STM-48-B24]">
      <seq>agaagacttacataattcacatggacaagttcaacatgcctgctgattttgatgatcatacacagtggtatgactcatcgttgaagtcagtatccaagagtgccaatgtgctttacacctacaacagtgtcatccatggctactcaacacagctaacagctgatgaagccaaagcacttgaacagcaaccaggaattctctcggtccacgaggaagtgatatacgagcttcacaccactcgatcccctacgtttctgggacttgaagggcacaaaagtagatcattctttcctcagactgaagcaaggagtgaggtcattattggtgtgctggacacaggtgtttggcctgaatcgaaaagttttgatgacactggactaggtccagtccctgcgagctggaagggcaagtgtcaaactggcaagaacttcgacgcatcaagctgtaatcggaaactcattggtgcgaggtttttctcacaaggttatgaagcagcttttggggcaatcgatgagaccattgaatccaagtcaccaagggacgatgaaggccatggcacacacactgcaactacagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="82762" stop="83941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83062" g_stop="83641" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E427585" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83062" e_stop="83641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGACTTATATAATTCACATGGACAAGTTCAACATGCCTGCTGATTTTGATGATCATACTCAGTGGTATGACTCATCATTGAAGTCAGTATCCAAGAGCGCCAACATGCTTTACACCTACAACAGTGTCATCCATGGCTACTCAACACAGCTAACAGCTGATGAAGCCAAAGCACTTGCACAGCAACCGGGAATTCTCTTGGTCCACGAGGAAGTGATATACGAGCTTCACACCACTCGATCCCCTACGTTTCTGGGACTTGAAGGACGTGAAAGTAGATCATTCTTTCCTCAGACTGAAGCAAGGAGTGAGGTCATTATTGGTGTGCTGGACACAGGTGTTTGGCCTGAATCAAAAAGTTTTGATGACACTGGACTAGGTCCAGTCCCTGCGAGCTGGAAGGGTAAGTGTCAAACTGGCAAGAACTTCGACGCATCAAGCTGTAATCGGAAACTTATTGGTGCGAGGTTTTTCTCACAAGGTTATGAAGCAGCTTTTGGGGCAATCGATGAGACCATTGAATCCAAGTCACCAAGGGACGATGAAGGCCATGGCACACACACTGCAACTACAGCAGC</genome_strand>
        <mrna_strand>AGAAGACTTACATAATTCACATGGACAAGTTCAACATGCCTGCTGATTTTGATGATCATACACAGTGGTATGACTCATCGTTGAAGTCAGTATCCAAGAGTGCCAATGTGCTTTACACCTACAACAGTGTCATCCATGGCTACTCAACACAGCTAACAGCTGATGAAGCCAAAGCACTTGAACAGCAACCAGGAATTCTCTCGGTCCACGAGGAAGTGATATACGAGCTTCACACCACTCGATCCCCTACGTTTCTGGGACTTGAAGGGCACAAAAGTAGATCATTCTTTCCTCAGACTGAAGCAAGGAGTGAGGTCATTATTGGTGTGCTGGACACAGGTGTTTGGCCTGAATCGAAAAGTTTTGATGACACTGGACTAGGTCCAGTCCCTGCGAGCTGGAAGGGCAAGTGTCAAACTGGCAAGAACTTCGACGCATCAAGCTGTAATCGGAAACTCATTGGTGCGAGGTTTTTCTCACAAGGTTATGAAGCAGCTTTTGGGGCAATCGATGAGACCATTGAATCCAAGTCACCAAGGGACGATGAAGGCCATGGCACACACACTGCAACTACAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558979" ref_strand="+" ref_description="SGN-E558979 [18404]">
      <seq>caagaacttcgacgcatcaagctgtaatcggaaactcattggtgcgaggtttttctcacaaggttatgaagcagcttttggggcaatcgatgagaccatcgaatccaagtcaccaagggacgatgaaggccatggcacacacactgcaactacagcagctggctcagttgtaaccggagctagcctcttgggttatgccactggtacagcacgtgggatggcttcacacgcaagagtggctgcatacaaggtatgttggaccggaggatgttttagcagcgacatacttgcagggcatggaccaggctgtcatagatggtgtaaatgtgctctcactgtcccttggtggcacaatttctgattatcatagggacatagttgcaattggagcattttctgcagcttctcaaggaatctttgtttcatgctcagcggggaatggcggtccaagctctgggaccctatccaacgttgcaccatggataactactgtaggtgcaggaaccatggaccgtgaatttccagcatacattggcattggaaatggggaaaaactcaatggaggtatcactttacagtggaaaggcattgcttagttctgtgatgccactgggtgtaatgctggcaaatgtcagccaattcatcaaatggaaatttatgcacaagtggtagtctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="83183" stop="84453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83483" g_stop="84153" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E558979" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83483" e_stop="84153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAACTTCGACGCATCAAGCTGTAATCGGAAACTTATTGGTGCGAGGTTTTTCTCACAAGGTTATGAAGCAGCTTTTGGGGCAATCGATGAGACCATTGAATCCAAGTCACCAAGGGACGATGAAGGCCATGGCACACACACTGCAACTACAGCAGCTGGCTCGGTTGTAACCGGAGCTAGCCTCTTGGGTTATGCAACTGGTACAGCACGTGGGATGGCTTCACACGCAAGGGTGGCAGCGTACAAGGTATGTTGGACCGGAGGATGTTTTAGCAGCGACATACTGGCAGGG-ATGGACCAGGCTGTCATAGATGGTGTAAATGTGCTCTCACTGTCCCTTGGTGGCACAATTTCTGATTATCATAGGGACATAGTTGCAATCGGAGCATTTTCTGCAGCATCTCAAGGGATCTTTGTCTCATGCTCAGCGGGGAATGGTGGTCCAAGCTCTGGGACGCTATCCAACGTTGCACCATGGATAACTACTGTAGGTGCTGGAACCATGGACCGTGAATTTCCAGCATACATTGGCATTGGAAATGGGAAAAAACTCAATGGA-GTATCACTTTACAGTGGAAAGGCATTGCCTAGTTCTGTGATGCCACT-GGTGT-ATGCTGG-AAATGTCAGCCAA-TCATCTAATGGAAATTTATGCACCAGTGGTAGTCTAA</genome_strand>
        <mrna_strand>CAAGAACTTCGACGCATCAAGCTGTAATCGGAAACTCATTGGTGCGAGGTTTTTCTCACAAGGTTATGAAGCAGCTTTTGGGGCAATCGATGAGACCATCGAATCCAAGTCACCAAGGGACGATGAAGGCCATGGCACACACACTGCAACTACAGCAGCTGGCTCAGTTGTAACCGGAGCTAGCCTCTTGGGTTATGCCACTGGTACAGCACGTGGGATGGCTTCACACGCAAGAGTGGCTGCATACAAGGTATGTTGGACCGGAGGATGTTTTAGCAGCGACATACTTGCAGGGCATGGACCAGGCTGTCATAGATGGTGTAAATGTGCTCTCACTGTCCCTTGGTGGCACAATTTCTGATTATCATAGGGACATAGTTGCAATTGGAGCATTTTCTGCAGCTTCTCAAGGAATCTTTGTTTCATGCTCAGCGGGGAATGGCGGTCCAAGCTCTGGGACCCTATCCAACGTTGCACCATGGATAACTACTGTAGGTGCAGGAACCATGGACCGTGAATTTCCAGCATACATTGGCATTGGAAATGGGGAAAAACTCAATGGAGGTATCACTTTACAGTGGAAAGGCATTGCTTAGTTCTGTGATGCCACTGGGTGTAATGCTGGCAAATGTCAGCCAATTCATCAAATGGAAATTTATGCACAAGTGGTAGTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552092" ref_strand="+" ref_description="SGN-E552092 [cTSB-2-M8]">
      <seq>ctcaaacctgatttgatagcaccaggtgtcaatattcttgctggctggacagggaaagttggaccaactggcttgcaagaagacaccaggaatgtaggcttcaacatcatctctggaacttccatgtcatgtccccatgtaagtgggctagcagcactactcaaagctgcccatccagaatggagtccagcagctataaggtcagcactgatgactacaagttatagcacatacaaaaacggaaaaacaatcgaggatgttgcaacaggaatgtcatctacaccatttgattatggtgctggacatgtgaatccaacagcagctgtcagtcctggtttagtgtatgatctaacagttgatgactatataaactttctatgtgccttggactacagcccgagtatgatcaaggtcattgcaaaaagagacatctcctgtgacgaaaataaggagtatagagttgctgatcttaattacccatctttttccattcctatggaaacggcctggggtgaacatgcagatagtagtacccccaccgtgaccagatacacaaggactctaacaaatgtgggaaacccagctacatacaaggcctcagtctcttctgaaacacaggacgtgaagattctggttgagccacaaacacttactttcagccgaaagaacgaaaagaaaacctacactgtgacattcactgctacttccaagccatcaggcacaaccagcttcgctcgactggagtggtcagatggacaacacgttgttgcaagcccaattgctttcagctggacatgattctgctagttctaaatcattcaccacaaaggtacaagtgctaatagtcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="84183" stop="85634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84483" g_stop="85334" g_length="852"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="852" r_length="852" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E552092" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84483" e_stop="85334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAACCTGATTTGATAGCACCAGGTGTCAATATTCTTGCTGGCTGGACAGGGAAAGTTGGACCAACTGGCTTGCAAGAAGACACCAGGAATGTAGGCTTCAACATCATCTCTGGAACTTCCATGTCATGTCCCCATGTAAGTGGGCTAGCAGCACTACTCAAAGCTACCCATCCAGAATGGAGTCCAGCAGCTATAAGGTCAGCACTGATGACTACAAGTTATAGCACATACAAAAACGGAAAAACAATCGAGGATGTTGCAACAGGAATGTCATCTACACCATTTGATTATGGTGCTGGACATGTGAATCCAACAGCAGCTGTCAGTCCTGGTTTAGTGTATGATCTAACAGTTGATGACTATATAAACTTTCTATGTGCCTTGGACTACAGCCCGAGTATGATCAAGGTCATTGCAAAAAGAGACATCTCCTGTGACGAAAATAAGGAGTATAGAGTTGCTGATCTTAATTACCCATCTTTTTCCATTCCTATGGAAACGGCCTGGGGTGAACATGCAGATAGTAGTACCCCCACCGTGACCAGATACACAAGGACTCTAACAAATGTGGGAAACCCAGCTACATACAAGGCCTCAGTCTCTTCTGAAACACAGGACGTGAAGATTCTGGTTGAGCCACAAACACTTACTTTCAGCCGAAAGAACGAAAAGAAAACCTACACTGTGACATTCACTGCTACTTCCAAGCCATCAGGCACAACCAGCTTCGCTCGACTGGAGTGGTCAGATGGACAACACGTTGTTGCAAGCCCAATTGCTTTCAGCTGGACATGATTCTGCTAGTTCTAAGTCATTCACCACAAATGTACAAGTGCTAATAGTCCTTTT</genome_strand>
        <mrna_strand>CTCAAACCTGATTTGATAGCACCAGGTGTCAATATTCTTGCTGGCTGGACAGGGAAAGTTGGACCAACTGGCTTGCAAGAAGACACCAGGAATGTAGGCTTCAACATCATCTCTGGAACTTCCATGTCATGTCCCCATGTAAGTGGGCTAGCAGCACTACTCAAAGCTGCCCATCCAGAATGGAGTCCAGCAGCTATAAGGTCAGCACTGATGACTACAAGTTATAGCACATACAAAAACGGAAAAACAATCGAGGATGTTGCAACAGGAATGTCATCTACACCATTTGATTATGGTGCTGGACATGTGAATCCAACAGCAGCTGTCAGTCCTGGTTTAGTGTATGATCTAACAGTTGATGACTATATAAACTTTCTATGTGCCTTGGACTACAGCCCGAGTATGATCAAGGTCATTGCAAAAAGAGACATCTCCTGTGACGAAAATAAGGAGTATAGAGTTGCTGATCTTAATTACCCATCTTTTTCCATTCCTATGGAAACGGCCTGGGGTGAACATGCAGATAGTAGTACCCCCACCGTGACCAGATACACAAGGACTCTAACAAATGTGGGAAACCCAGCTACATACAAGGCCTCAGTCTCTTCTGAAACACAGGACGTGAAGATTCTGGTTGAGCCACAAACACTTACTTTCAGCCGAAAGAACGAAAAGAAAACCTACACTGTGACATTCACTGCTACTTCCAAGCCATCAGGCACAACCAGCTTCGCTCGACTGGAGTGGTCAGATGGACAACACGTTGTTGCAAGCCCAATTGCTTTCAGCTGGACATGATTCTGCTAGTTCTAAATCATTCACCACAAAGGTACAAGTGCTAATAGTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552089" ref_strand="+" ref_description="SGN-E552089 [cTSB-2-M5]">
      <seq>ctcaaacctgatttgatagcaccaggtgtcaatattcttgctggctggacagggaaagttggaccaactggcttgcaagaagacaccaggaatgtaggcttcaacatcatctctggaacttccatgtcatgtccccatgtaagtgggctagcagcactactcaaagctgcccatccagaatggagtccagcagctataaggtcagcactgatgactacaagttatagcacatacaaaaacggaaaaacaatcgaggatgttgcaacaggaatgtcatctacaccatttgattatggtgctggacatgtgaatccaacagcagctgtcagtcctggtttagtgtatgatctaacagttgatgactatataaactttctatgtgccttggactacagcccgagtatgatcaaggtcattgcaaaaagagacatctcctgtgacgaaaataaggagtatagagttgctgatcttaattacccatctttttccattcctatggaaacggcctggggtgaacatgcagatagtagtacccccaccgtgaccagatacacaaggactctaacaaatgtgggaaacccagctacatacaaggcctcagtctcttctgaaacacaggacgtgaagattctggttgagccacaaacacttactttcagccgaaagaacgaaaagaaaacctacactgtgacattcactgctacttccaagccatcaggcacaaccagcttcgctcgactggagtggtcagatggacaaccacttgttgcaagcccaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="84183" stop="85564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84483" g_stop="85264" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E552089" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84483" e_stop="85264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAACCTGATTTGATAGCACCAGGTGTCAATATTCTTGCTGGCTGGACAGGGAAAGTTGGACCAACTGGCTTGCAAGAAGACACCAGGAATGTAGGCTTCAACATCATCTCTGGAACTTCCATGTCATGTCCCCATGTAAGTGGGCTAGCAGCACTACTCAAAGCTACCCATCCAGAATGGAGTCCAGCAGCTATAAGGTCAGCACTGATGACTACAAGTTATAGCACATACAAAAACGGAAAAACAATCGAGGATGTTGCAACAGGAATGTCATCTACACCATTTGATTATGGTGCTGGACATGTGAATCCAACAGCAGCTGTCAGTCCTGGTTTAGTGTATGATCTAACAGTTGATGACTATATAAACTTTCTATGTGCCTTGGACTACAGCCCGAGTATGATCAAGGTCATTGCAAAAAGAGACATCTCCTGTGACGAAAATAAGGAGTATAGAGTTGCTGATCTTAATTACCCATCTTTTTCCATTCCTATGGAAACGGCCTGGGGTGAACATGCAGATAGTAGTACCCCCACCGTGACCAGATACACAAGGACTCTAACAAATGTGGGAAACCCAGCTACATACAAGGCCTCAGTCTCTTCTGAAACACAGGACGTGAAGATTCTGGTTGAGCCACAAACACTTACTTTCAGCCGAAAGAACGAAAAGAAAACCTACACTGTGACATTCACTGCTACTTCCAAGCCATCAGGCACAACCAGCTTCGCTCGACTGGAGTGGTCAGATGGACAACACGTTGTTGCAAGCCCAATTGC</genome_strand>
        <mrna_strand>CTCAAACCTGATTTGATAGCACCAGGTGTCAATATTCTTGCTGGCTGGACAGGGAAAGTTGGACCAACTGGCTTGCAAGAAGACACCAGGAATGTAGGCTTCAACATCATCTCTGGAACTTCCATGTCATGTCCCCATGTAAGTGGGCTAGCAGCACTACTCAAAGCTGCCCATCCAGAATGGAGTCCAGCAGCTATAAGGTCAGCACTGATGACTACAAGTTATAGCACATACAAAAACGGAAAAACAATCGAGGATGTTGCAACAGGAATGTCATCTACACCATTTGATTATGGTGCTGGACATGTGAATCCAACAGCAGCTGTCAGTCCTGGTTTAGTGTATGATCTAACAGTTGATGACTATATAAACTTTCTATGTGCCTTGGACTACAGCCCGAGTATGATCAAGGTCATTGCAAAAAGAGACATCTCCTGTGACGAAAATAAGGAGTATAGAGTTGCTGATCTTAATTACCCATCTTTTTCCATTCCTATGGAAACGGCCTGGGGTGAACATGCAGATAGTAGTACCCCCACCGTGACCAGATACACAAGGACTCTAACAAATGTGGGAAACCCAGCTACATACAAGGCCTCAGTCTCTTCTGAAACACAGGACGTGAAGATTCTGGTTGAGCCACAAACACTTACTTTCAGCCGAAAGAACGAAAAGAAAACCTACACTGTGACATTCACTGCTACTTCCAAGCCATCAGGCACAACCAGCTTCGCTCGACTGGAGTGGTCAGATGGACAACCACTTGTTGCAAGCCCAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596048" ref_strand="+" ref_description="SGN-E596048 [39333]">
      <seq>gttacagcacatacaaaaatggaaaaacaattgaggagtatttcaacaggaatgtcatctacaccatttgattatggtgctggacatgtgaatccaacagcagctgtcaatcctggtttagtgtatgatctaacagttgatgactatataaacttcctatgtgccttggactacagcccgagtatgatcaaggtcattgcaaagagagacatctcctgtgacaaaaataaggagtatagagttgctgatcttaattacccatctttttccattcctatggaaacggcctggggtgaacatgcagatagtagtacacccaccgtgaccagatacacaaggactctaacaaatgtgggaaacccagctacatacaaggcctcagtctcttctgaaacacaggaagtgaagattctggttgagccacaaacacttactttcagccgaaagaacgaaaagaaaacctacactgtgaccttcactgctagttccaagccatcaggcacaactagcttcgctcgactggagtggtcagatggacaacacgttgttgctagcccaattgctttcagctggacatgattctgctagttctaagtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="84403" stop="85601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84703" g_stop="85301" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E596048" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84703" e_stop="85301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATAGCACATACAAAAACGGAAAAACAATCGAGGA-TGTTGCAACAGGAATGTCATCTACACCATTTGATTATGGTGCTGGACATGTGAATCCAACAGCAGCTGTCAGTCCTGGTTTAGTGTATGATCTAACAGTTGATGACTATATAAACTTTCTATGTGCCTTGGACTACAGCCCGAGTATGATCAAGGTCATTGCAAAAAGAGACATCTCCTGTGACGAAAATAAGGAGTATAGAGTTGCTGATCTTAATTACCCATCTTTTTCCATTCCTATGGAAACGGCCTGGGGTGAACATGCAGATAGTAGTACCCCCACCGTGACCAGATACACAAGGACTCTAACAAATGTGGGAAACCCAGCTACATACAAGGCCTCAGTCTCTTCTGAAACACAGGACGTGAAGATTCTGGTTGAGCCACAAACACTTACTTTCAGCCGAAAGAACGAAAAGAAAACCTACACTGTGACATTCACTGCTACTTCCAAGCCATCAGGCACAACCAGCTTCGCTCGACTGGAGTGGTCAGATGGACAACACGTTGTTGCAAGCCCAATTGCTTTCAGCTGGACATGATTCTGCTAGTTCTAAGTCATT</genome_strand>
        <mrna_strand>GTTACAGCACATACAAAAATGGAAAAACAATTGAGGAGTATTTCAACAGGAATGTCATCTACACCATTTGATTATGGTGCTGGACATGTGAATCCAACAGCAGCTGTCAATCCTGGTTTAGTGTATGATCTAACAGTTGATGACTATATAAACTTCCTATGTGCCTTGGACTACAGCCCGAGTATGATCAAGGTCATTGCAAAGAGAGACATCTCCTGTGACAAAAATAAGGAGTATAGAGTTGCTGATCTTAATTACCCATCTTTTTCCATTCCTATGGAAACGGCCTGGGGTGAACATGCAGATAGTAGTACACCCACCGTGACCAGATACACAAGGACTCTAACAAATGTGGGAAACCCAGCTACATACAAGGCCTCAGTCTCTTCTGAAACACAGGAAGTGAAGATTCTGGTTGAGCCACAAACACTTACTTTCAGCCGAAAGAACGAAAAGAAAACCTACACTGTGACCTTCACTGCTAGTTCCAAGCCATCAGGCACAACTAGCTTCGCTCGACTGGAGTGGTCAGATGGACAACACGTTGTTGCTAGCCCAATTGCTTTCAGCTGGACATGATTCTGCTAGTTCTAAGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427586" ref_strand="+" ref_description="SGN-E427586 [STM-48-B24]">
      <seq>aatacagcaccagccttttgctgggcaaatcccataacatttccttgcctagaattgcctaggtttcttaattataggtcagggatacttgttcagttggtgaaatattagaggagtaactgctgcacactagtaattattttaaaaggactattagcacttgtacatttgtggtgaatgacttagaactagcagaatcatgtccagctgaaagcaattgggctagcaacaacgtgttgtccatctgaccattccagtcgagcgaagctagttgtgcctgatggcttggaactagcagtgaatgtcacagtgtaggttttcttttcgttctttcggctgaaagttagtgtttgtggctcaaccagaatcttcacttcctgtgtttcagaagagaccgaggccttgtatgtagctgggtttcccatatttgttagagtccttgtgtatctggtcacggtaggtgtactactatctgcatgttcaccccaggccgtttccaaaggaatggaaaaagatgggtaattaagatcagcaactctatactccttatttttgtcacaggagatgtctctctttgcaatgaccttgatcatacttgggctgtagtccaaggcacaaagaaagtttatatagtcatcaactgttagatcatatactaatccaggattgacagctgctgtcggattcacatgtccagcaccataatcaaatggtgtagatgacattcctgttgcaacatcctcaattgtttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="85771" stop="84424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85471" g_stop="84724" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="754" r_length="754" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E427586" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85471" e_stop="84724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACAGCACCAGCCTTTTGCTGGGCAAAT--CA-ACCA--ACATTGCCTAGAATTGCCTAGGCTTCTTAATTATAGGTCA-GGATACTTGTTCAGTTGGTGAAATATTAGAGGAGTAACTGCTGCACACTAGTAATTATTTAAAAAGGACTATTAGCACTTGTACATTTGTGGTGAATGACTTAGAACTAGCAGAATCATGTCCAGCTGAAAGCAATTGGGCTTGCAACAACGTGTTGTCCATCTGACCACTCCAGTCGAGCGAAGCTGGTTGTGCCTGATGGCTTGGAAGTAGCAGTGAATGTCACAGTGTAGGTTTTCTTTTCGTTCTTTCGGCTGAAAGTAAGTGTTTGTGGCTCAACCAGAATCTTCACGTCCTGTGTTTCAGAAGAGACTGAGGCCTTGTATGTAGCTGGGTTTCCCACATTTGTTAGAGTCCTTGTGTATCTGGTCACGGTGGGGGTACTACTATCTGCATGTTCACCCCAGGCCGTTTCCATAGGAATGGAAAAAGATGGGTAATTAAGATCAGCAACTCTATACTCCTTATTTTCGTCACAGGAGATGTCTCTTTTTGCAATGACCTTGATCATACTCGGGCTGTAGTCCAAGGCACATAGAAAGTTTATATAGTCATCAACTGTTAGATCATACACTAAACCAGGACTGACAGCTGCTGTTGGATTCACATGTCCAGCACCATAATCAAATGGTGTAGATGACATTCCTGTTGCAACATCCTCGATTGTTTTTC</genome_strand>
        <mrna_strand>AATACAGCACCAGCCTTTTGCTGGGCAAATCCCATAACATTTCCTTGCCTAGAATTGCCTAGGTTTCTTAATTATAGGTCAGGGATACTTGTTCAGTTGGTGAAATATTAGAGGAGTAACTGCTGCACACTAGTAATTATTTTAAAAGGACTATTAGCACTTGTACATTTGTGGTGAATGACTTAGAACTAGCAGAATCATGTCCAGCTGAAAGCAATTGGGCTAGCAACAACGTGTTGTCCATCTGACCATTCCAGTCGAGCGAAGCTAGTTGTGCCTGATGGCTTGGAACTAGCAGTGAATGTCACAGTGTAGGTTTTCTTTTCGTTCTTTCGGCTGAAAGTTAGTGTTTGTGGCTCAACCAGAATCTTCACTTCCTGTGTTTCAGAAGAGACCGAGGCCTTGTATGTAGCTGGGTTTCCCATATTTGTTAGAGTCCTTGTGTATCTGGTCACGGTAGGTGTACTACTATCTGCATGTTCACCCCAGGCCGTTTCCAAAGGAATGGAAAAAGATGGGTAATTAAGATCAGCAACTCTATACTCCTTATTTTTGTCACAGGAGATGTCTCTCTTTGCAATGACCTTGATCATACTTGGGCTGTAGTCCAAGGCACAAAGAAAGTTTATATAGTCATCAACTGTTAGATCATATACTAATCCAGGATTGACAGCTGCTGTCGGATTCACATGTCCAGCACCATAATCAAATGGTGTAGATGACATTCCTGTTGCAACATCCTCAATTGTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616472" ref_strand="+" ref_description="SGN-E616472 [66282]">
      <seq>aaactttctttgtgccttggactacagcccaagtatgatcaaggtcattgcaaagagagacatctcctgtgacaaaaataaggagtatagagttgctgatcttaattacccatctttttccattcctttggaaacggcctggggtgaacatgcagatagtagtacacctaccgtgaccagatacacaaggactctaacaaatgtgggaaacccagctacatacaaggcctcggtctcttctgaaacacaggaagtgaagattctggttgagccacaaacactaactttcagccgaaagaacgaaaagaaaacctacactgtgacattcactgctagttccaagccatcaggcacaactagcttcgctcgactggaatggtcagatggacaacacgttgttgctagcccaattgctttcagctggacatgattctgctagttctaagtcattcaccacaaatgtacaagtgctaatagtcctttttaaataattactagtgtgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="84551" stop="85655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84851" g_stop="85355" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E616472" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84851" e_stop="85355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTCTATGTGCCTTGGACTACAGCCCGAGTATGATCAAGGTCATTGCAAAAAGAGACATCTCCTGTGACGAAAATAAGGAGTATAGAGTTGCTGATCTTAATTACCCATCTTTTTCCATTCCTATGGAAACGGCCTGGGGTGAACATGCAGATAGTAGTACCCCCACCGTGACCAGATACACAAGGACTCTAACAAATGTGGGAAACCCAGCTACATACAAGGCCTCAGTCTCTTCTGAAACACAGGACGTGAAGATTCTGGTTGAGCCACAAACACTTACTTTCAGCCGAAAGAACGAAAAGAAAACCTACACTGTGACATTCACTGCTACTTCCAAGCCATCAGGCACAACCAGCTTCGCTCGACTGGAGTGGTCAGATGGACAACACGTTGTTGCAAGCCCAATTGCTTTCAGCTGGACATGATTCTGCTAGTTCTAAGTCATTCACCACAAATGTACAAGTGCTAATAGTCCTTTTTAAATAATTACTAGTGTGCAG</genome_strand>
        <mrna_strand>AAACTTTCTTTGTGCCTTGGACTACAGCCCAAGTATGATCAAGGTCATTGCAAAGAGAGACATCTCCTGTGACAAAAATAAGGAGTATAGAGTTGCTGATCTTAATTACCCATCTTTTTCCATTCCTTTGGAAACGGCCTGGGGTGAACATGCAGATAGTAGTACACCTACCGTGACCAGATACACAAGGACTCTAACAAATGTGGGAAACCCAGCTACATACAAGGCCTCGGTCTCTTCTGAAACACAGGAAGTGAAGATTCTGGTTGAGCCACAAACACTAACTTTCAGCCGAAAGAACGAAAAGAAAACCTACACTGTGACATTCACTGCTAGTTCCAAGCCATCAGGCACAACTAGCTTCGCTCGACTGGAATGGTCAGATGGACAACACGTTGTTGCTAGCCCAATTGCTTTCAGCTGGACATGATTCTGCTAGTTCTAAGTCATTCACCACAAATGTACAAGTGCTAATAGTCCTTTTTAAATAATTACTAGTGTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581464" ref_strand="+" ref_description="SGN-E581464 [6680]">
      <seq>tgtggttcagtacataattatatctggcaaatacagcaccagccttttgctgggcaaatcaaccaacatttccttggcctagaattgcctaggcttcttaattataggtcagggattgttcagttggtgaaatattagaggagtaactactgcacactagtaattatttaaaaaggactattagcacttgtacatttgtggtgaatgacttagaactagcagaatcatgtccagctgaaagcaattgggctagcaacaacgtgttgtccatctgaccactccagtcgagcgaagctagttgtgcctgatggcttggaactagcagtgaaggtcacagtgtaggttttcttttcgttctttcggctgaaagtaagtgtttgtggctcaaccagaatcttcacttcctgtgtttcagaagagactgaggccttgtatgtagctgggtttcccacatttgttagagtccttggtgtatctggtcacggtgggtgtactactatctgcatgttcaccccaggccgtttccataggaatggaaaaagatgggtaattaagatcagaactctatactccttatttttgtcacaggagatgtctctctttgcaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="85800" stop="84594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85500" g_stop="84894" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E581464" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85500" e_stop="84894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGTTCAGTACATAATTATATCTGGCAAATACAGCACCAGCCTTTTGCTGGGCAAATCAACCAACATT------GCCTAGAATTGCCTAGGCTTCTTAATTATAGGTCAGGATACTTGTTCAGTTGGTGAAATATTAGAGGAGTAACTGCTGCACACTAGTAATTATTTAAAAAGGACTATTAGCACTTGTACATTTGTGGTGAATGACTTAGAACTAGCAGAATCATGTCCAGCTGAAAGCAATTGGGCTTGCAACAACGTGTTGTCCATCTGACCACTCCAGTCGAGCGAAGCTGGTTGTGCCTGATGGCTTGGAAGTAGCAGTGAATGTCACAGTGTAGGTTTTCTTTTCGTTCTTTCGGCTGAAAGTAAGTGTTTGTGGCTCAACCAGAATCTTCACGTCCTGTGTTTCAGAAGAGACTGAGGCCTTGTATGTAGCTGGGTTTCCCACATTTGTTAGAGTCCTT-GTGTATCTGGTCACGGTGGGGGTACTACTATCTGCATGTTCACCCCAGGCCGTTTCCATAGGAATGGAAAAAGATGGGTAATTAAGATCAGCAACTCTATACTCCTTATTTTCGTCACAGGAGATGTCTCTTTTTGCAATGAC</genome_strand>
        <mrna_strand>TGTGGTTCAGTACATAATTATATCTGGCAAATACAGCACCAGCCTTTTGCTGGGCAAATCAACCAACATTTCCTTGGCCTAGAATTGCCTAGGCTTCTTAATTATAGGTCAGG-GA-TTGTTCAGTTGGTGAAATATTAGAGGAGTAACTACTGCACACTAGTAATTATTTAAAAAGGACTATTAGCACTTGTACATTTGTGGTGAATGACTTAGAACTAGCAGAATCATGTCCAGCTGAAAGCAATTGGGCTAGCAACAACGTGTTGTCCATCTGACCACTCCAGTCGAGCGAAGCTAGTTGTGCCTGATGGCTTGGAACTAGCAGTGAAGGTCACAGTGTAGGTTTTCTTTTCGTTCTTTCGGCTGAAAGTAAGTGTTTGTGGCTCAACCAGAATCTTCACTTCCTGTGTTTCAGAAGAGACTGAGGCCTTGTATGTAGCTGGGTTTCCCACATTTGTTAGAGTCCTTGGTGTATCTGGTCACGGTGGGTGTACTACTATCTGCATGTTCACCCCAGGCCGTTTCCATAGGAATGGAAAAAGATGGGTAATTAAGATCAG-AACTCTATACTCCTTATTTTTGTCACAGGAGATGTCTCTCTTTGCAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581463" ref_strand="+" ref_description="SGN-E581463 [6680]">
      <seq>atatccacctgtattgtgtggttcagtacataattatatctggcaaatacagcaccagccttttgctgggcaaatcaaccaacatttccttggcctagaattgcctaggcttcttaattataggtcagggattgttcagttggtgaaatattagaggagtaactactgcacactagtaattatttaaaaaggactattagcacttgtacatttgtggtgaatgacttagaactagcagaatcatgtccagctgaaagcaattgggctagcaacaacgtgttgtccatctgaccactccagtcgagcgaagctagttgtgcctgatggcttggaactagcagtgaaggtcacagtgtaggttttcttttcgttctttcggctgaaagtaagtgtttgtggctcaaccagaatcttcacttcctgtgtttcagaagagactgaggccttgtatgtagctgggtttcccacatttgttagagtccttgtgtatctggtcacggtgggtgtactactatctgcatgttcaccccaggccgtttccataggaatggaaaaagatgggtaacttacgatcagcaactctatactcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="85816" stop="84630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85516" g_stop="84930" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E581463" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85516" e_stop="84930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCACCTGTATTGTGTGGTTCAGTACATAATTATATCTGGCAAATACAGCACCAGCCTTTTGCTGGGCAAATCAACCAACA-TT-----GCCTAGAATTGCCTAGGCTTCTTAATTATAGGTCAGGATACTTGTTCAGTTGGTGAAATATTAGAGGAGTAACTGCTGCACACTAGTAATTATTTAAAAAGGACTATTAGCACTTGTACATTTGTGGTGAATGACTTAGAACTAGCAGAATCATGTCCAGCTGAAAGCAATTGGGCTTGCAACAACGTGTTGTCCATCTGACCACTCCAGTCGAGCGAAGCTGGTTGTGCCTGATGGCTTGGAAGTAGCAGTGAATGTCACAGTGTAGGTTTTCTTTTCGTTCTTTCGGCTGAAAGTAAGTGTTTGTGGCTCAACCAGAATCTTCACGTCCTGTGTTTCAGAAGAGACTGAGGCCTTGTATGTAGCTGGGTTTCCCACATTTGTTAGAGTCCTTGTGTATCTGGTCACGGTGGGGGTACTACTATCTGCATGTTCACCCCAGGCCGTTTCCATAGGAATGGAAAAAGATGGGTAA-TTAAGATCAGCAACTCTATACTCCTT</genome_strand>
        <mrna_strand>ATATCCACCTGTATTGTGTGGTTCAGTACATAATTATATCTGGCAAATACAGCACCAGCCTTTTGCTGGGCAAATCAACCAACATTTCCTTGGCCTAGAATTGCCTAGGCTTCTTAATTATAGGTCAGG-GA-TTGTTCAGTTGGTGAAATATTAGAGGAGTAACTACTGCACACTAGTAATTATTTAAAAAGGACTATTAGCACTTGTACATTTGTGGTGAATGACTTAGAACTAGCAGAATCATGTCCAGCTGAAAGCAATTGGGCTAGCAACAACGTGTTGTCCATCTGACCACTCCAGTCGAGCGAAGCTAGTTGTGCCTGATGGCTTGGAACTAGCAGTGAAGGTCACAGTGTAGGTTTTCTTTTCGTTCTTTCGGCTGAAAGTAAGTGTTTGTGGCTCAACCAGAATCTTCACTTCCTGTGTTTCAGAAGAGACTGAGGCCTTGTATGTAGCTGGGTTTCCCACATTTGTTAGAGTCCTTGTGTATCTGGTCACGGTGGGTGTACTACTATCTGCATGTTCACCCCAGGCCGTTTCCATAGGAATGGAAAAAGATGGGTAACTTACGATCAGCAACTCTATACTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369188" ref_strand="+" ref_description="SGN-E369188 [TUS-23-I20](-)">
      <seq>tactgaacattggatttgggatgggccttgtagatacagccatacaacaatattcacctttatcacacactattattgaagctcatccagaggtctatgatcgtatgatgcgcgcaggttggggtgagaaggaaaatgtgaaaatcatatttggtcggtggcaagatgtcatttctaaacttgaaacctatgatggaatattttttgatacttatggggagtattatgaagatatgcgggaatttcatcaacatcttcctagattattgaagccaggtggtatatattcattttttaatggtctatgtggaggtaatcccttctttcatatcgtatactgtcagctagtctctctaaaacttgaaagcttgggatattttacgcagctgataccattaccagtgaaggattgtttaggtgaatctgtgtgggagggtgttaaacaaaagtactggcagttagatacgtattaccttcctgtttgtcagtctatgagcgaatcagaatgatattattggacccctgataatgtggcatcaaatgaaaaagcctcctaggatcttcttcttttcttgttgtgtattcattttgtaacgagtttggtagtattttcacatcttcgattttttgatatttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="88325" stop="70090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88025" g_stop="87831" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87830" i_stop="86962" i_length="869">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86961" g_stop="86522" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="635" r_length="440" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86521" i_stop="86402" i_length="120">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86401" g_stop="86373" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="664" r_length="29" r_score="0.655"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E369188" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88025" e_stop="87831"/>
          <exon e_start="86961" e_stop="86522"/>
          <exon e_start="86401" e_stop="86373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGAACATTGGATTTGGGATGGGCCTTGTAGATACAGCCATACAACAATATTCACCTTTATCACACACTATTATTGAAGCTCATCCAGAGGTCTATGATCGTATGATGCGCGCAGGTTGGGGTGAGAAGGAGAATGTGAAAATCATATTTGGTCGGTGGCAAGATGTCATTTCTAAACTTGAAACCTATGATGGTAAACTTCCACTTCTTCCCTTTCTATTTTTAAAAGAAGAAAAACCCCTTTATGCTGGTAATACTTCTGATTTTTAGTGTCTTGTTAGTGCATTGCTTGTTTTGATCATGAGATTCTTCCCTATACATTTTCTTTTCTGGTAAGTTTAGAAAATCACTCTCTCATCATGCCTATGAAGTATGAATGACAATATGAGAATATACTACTTCAAGGTTTCATTGCACTTAGTTTAGCGATGAAAACATGAAAACCTTTCAGGAAAACATATCAGTTTCAAGTAGAATTTCCTCTTTTTCCTCCATTCAAATTACTGCTCAATATCCCAAGTCAATAGTTGGTGCATGATTCTTATTGTCATCAATATGATACATTATTCTGAAGTTTGTACTGGTGGTTGTTAATACATTTTCTTCAAAAAATTTATGCACTATGCACAATTTTTTGTTTTTTTGTATGTTTACAGGCACTGCTGTAACATAAAATTCATTTCTCTCTAAAAACTGTGTAGGAAGTGTTTTTTAATCTTCACAAAGGAGCAATTTTCTTTTGAGCTCCTAGCTATTGATTTCATATGCTGATTCTTGCTGTTCCAATGACATAAATGCCTCACAAAACAACATACAATGCTTTTCATAACTCCGCTTGCTAGCAAAAGCAATAAGACAAATAATAAGAGTCATGAGTGTCAAGTTGGCCTACTTCTGTAACTTGATTAAGCAAAAAATTTCACTTATCCAACATTGTAATAATTGAAGATGTCAGTTAATTATATAAGCTCGGTTCTCTTTTGTTAGATTTAAGTTTAGATTCTATCTGTTGTCTTCTTTTTTCATCTTTATCTCTTAATGTGTATCTACTCTGTTCTGCAGGAATATTTTTTGATACTTATGGGGAGTATTATGAAGATATGCGGGAATTTCATCAACATCTTCCTAGATTATTGAAGCCAGGTGGTATATATTCATTTTTTAATGGTCTATGTGGAGGTAATCCCTTCTTTCATATCGTATACTGTCAGCTAGTCTCTCTAGAACTTGAGAGCTTGGGATATTCTACGCAGCTGATACCATTACCAGTGAAGGATTGTTTAGGTGAATCTGTGTGGGAGGGTGTTAAACAGAAGTACTGGCAGTTAGATACGTATTACCTTCCTGTTTGTCAGTCTATGAGCGAATCAGAATGATATTATTGGACCACTGATAATGTGGCATCAGATGAAAAAGCCTCCTAGGATCTTCTTCTTTTCTTGTTGTGTATTCATTTTGTAACGAGTTTGGTAGTATTTTCACATCTTCGATTTTTAGATATTATTATGCTGGCATGCTGCTTATATTTTTTTTGGAATTGGGATGATTTGTGTGAATCAGTGCATAGATGCTATTACAACACCAACATACCCAGTGTAGTCCCATAAATGCATAAATGCTATTGCCAAGAAAAAAACCCAAAGAAAAGAGA</genome_strand>
        <mrna_strand>TACTGAACATTGGATTTGGGATGGGCCTTGTAGATACAGCCATACAACAATATTCACCTTTATCACACACTATTATTGAAGCTCATCCAGAGGTCTATGATCGTATGATGCGCGCAGGTTGGGGTGAGAAGGAAAATGTGAAAATCATATTTGGTCGGTGGCAAGATGTCATTTCTAAACTTGAAACCTATGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATTTTTTGATACTTATGGGGAGTATTATGAAGATATGCGGGAATTTCATCAACATCTTCCTAGATTATTGAAGCCAGGTGGTATATATTCATTTTTTAATGGTCTATGTGGAGGTAATCCCTTCTTTCATATCGTATACTGTCAGCTAGTCTCTCTAAAACTTGAAAGCTTGGGATATTTTACGCAGCTGATACCATTACCAGTGAAGGATTGTTTAGGTGAATCTGTGTGGGAGGGTGTTAAACAAAAGTACTGGCAGTTAGATACGTATTACCTTCCTGTTTGTCAGTCTATGAGCGAATCAGAATGATATTATTGGACCCCTGATAATGTGGCATCAAATGAAAAAGCCTCCTAGGATCTTCTTCTTTTCTTGTTGTGTATTCATTTTGTAACGAGTTTGGTAGTATTTTCACATCTTCGATTTTTTGATATT........................................................................................................................TAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369189" ref_strand="+" ref_description="SGN-E369189 [TUS-23-I20]">
      <seq>cgaggtcgtaaaggctctccttgatgctagtgccccatggaatgccctgaccccttccaatgtctccgccggcgacttcgccatggatgctggtcatcaagaggcttttgacgttcttctcaataccgcaatccaggcagaattgatccttggaacaattgcaaggaaggacaatgctaaggggaactcagatgggaactatttagatgatagagtcacttttagtgaagataaaattatggactctgatagtaaggctattatgatggcttgggagaagccattgatggaagctcatgcgaaagctgtctgctcaaatggtggtcacatactgaacattggatttgggatgggccttgtagatacagccatacaacaatattcacctttatcacacactattattgaagctcatccagaggtctatgatcgtatgatgcgcgcaggttggggtgagaaggagaatgtgaaaatcatatttggtcggtggcaagatgtcatttctaaacttgaaacctatgatggaatattttttgatacttatggggagtattatgaagatatgcgggaatttcatcaacatcttcctagattattgaagccaggtggtatatattcattttttaatggtctatgtggaggtaatcccttctttcatatcgtatactgtcagctagtctctctagaacttgagagcttgggatattctacgcagctgataccatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="89777" stop="86459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89477" g_stop="89350" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89349" i_stop="88227" i_length="1123">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88226" g_stop="87831" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="524" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87830" i_stop="86962" i_length="869">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86961" g_stop="86759" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="727" r_length="203" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E369189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89477" e_stop="89350"/>
          <exon e_start="88226" e_stop="87831"/>
          <exon e_start="86961" e_stop="86759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGTCGTAAAGGCTCTCCTTGATGCTAGTGCCCCATGGAATGCCCTGACCCCTTCCAATGTCTCCGCCGGCGACTTCGCCATGGATGCTGGTCATCAAGAGGCTTTTGACGTTCTTCTCAATACCGGTGCTTACTTTTAATCCTCGCAATCTCTTCCTTATGTTTTAGAGTTAGCTTTGGCTACTCAATAGTACATTATACGCATCATTTAAATTTTGTGTTGTAAATTTATTCAAATTGTTAATGCGTGACATTACGTAACAACAGAAATCCATACCAAATACTACACTATCCAATATAATAGATTATTATGAAACTATATGTAACAACTATCCAAACAGAATGGAATTCTATAAGACTTGTGTTTGGTTTGAGGTATAAAGAAATATATTAGTAGAGTAACTGCTGTATTACTGACACAAATTCTAGTTTTCTGATAATACATCTGCGAATTAATAATATAACTCTACTTTGCTAATACAATGTCTGACTTTCTATACGAAACTTCACATAAGTAATAACAGCATAACTAGTTTTGAGAAAAATTATGTATTATTCCAGATAGGATGTGGAATAATAATATGTGCATCTGAAGAAGTAGCTGTATAAGATGTACATCACAAAGATACTCTTAATGTAAGAGGACTTGTTTTGATATCACATTTCCGGCATAATAATCCCCATGTTGTCATCCAATGCATGATAATTCATGTACTAATACGGAACGAAACAACCTGTTAGTCTATCTTATTTAGCTGTATAATTCCTCTTGTTTTAAGCATAAGGAAAATCTGATCTCTCTTCATGTTCATATGATGATGTTTTACTCATCACATAATTTTAAGATATTAGTTGACATCTATATAGTTAACTAATGGTTGAAAATTGTTTGATGAAGAATGTTATGAGTGGATGGTGTAAACATATGGAAAATCACAAATGGAAAAGTGTGATATAACTTGGGACAAAACGACTGATTCGTATATTGTGCAGAAAATAATAATTAAGAGCAAATTGTTATGTTTCATTAATTTTTTATTATGTTGTTGTAATTGTTGTTTTTATTGTTCCCAATATGCCTGAGAGCCAACATTATATTAAAATTTGAAATTTTGCAGAGTAAAAAACTAGTATCAGAAAAGGCAACTGAAGCTGTTAATCTTCTTTATTCAGTGTGTAGTTCAACTAAAAGTTTGAGGCTGTTTAGCTTAATATTTCTGATCAAACATGTTTATTATTCAATATGTAGCAATCCAGGCAGAATTGATCCTTGGAACAATTGCAAGGAAGGACAATGCTAAGGGGAACTCAGATGGGAACTATTTAGATGATAGAGTCACTTTTAGTGAAGATAAAATTATGGACTCTGATAGTAAGGCTATTATGATGGCTTGGGAGAAGCCATTGATGGAAGCTCATGCGAAAGCTGTCTGCTCAAATGGTGGTCACATACTGAACATTGGATTTGGGATGGGCCTTGTAGATACAGCCATACAACAATATTCACCTTTATCACACACTATTATTGAAGCTCATCCAGAGGTCTATGATCGTATGATGCGCGCAGGTTGGGGTGAGAAGGAGAATGTGAAAATCATATTTGGTCGGTGGCAAGATGTCATTTCTAAACTTGAAACCTATGATGGTAAACTTCCACTTCTTCCCTTTCTATTTTTAAAAGAAGAAAAACCCCTTTATGCTGGTAATACTTCTGATTTTTAGTGTCTTGTTAGTGCATTGCTTGTTTTGATCATGAGATTCTTCCCTATACATTTTCTTTTCTGGTAAGTTTAGAAAATCACTCTCTCATCATGCCTATGAAGTATGAATGACAATATGAGAATATACTACTTCAAGGTTTCATTGCACTTAGTTTAGCGATGAAAACATGAAAACCTTTCAGGAAAACATATCAGTTTCAAGTAGAATTTCCTCTTTTTCCTCCATTCAAATTACTGCTCAATATCCCAAGTCAATAGTTGGTGCATGATTCTTATTGTCATCAATATGATACATTATTCTGAAGTTTGTACTGGTGGTTGTTAATACATTTTCTTCAAAAAATTTATGCACTATGCACAATTTTTTGTTTTTTTGTATGTTTACAGGCACTGCTGTAACATAAAATTCATTTCTCTCTAAAAACTGTGTAGGAAGTGTTTTTTAATCTTCACAAAGGAGCAATTTTCTTTTGAGCTCCTAGCTATTGATTTCATATGCTGATTCTTGCTGTTCCAATGACATAAATGCCTCACAAAACAACATACAATGCTTTTCATAACTCCGCTTGCTAGCAAAAGCAATAAGACAAATAATAAGAGTCATGAGTGTCAAGTTGGCCTACTTCTGTAACTTGATTAAGCAAAAAATTTCACTTATCCAACATTGTAATAATTGAAGATGTCAGTTAATTATATAAGCTCGGTTCTCTTTTGTTAGATTTAAGTTTAGATTCTATCTGTTGTCTTCTTTTTTCATCTTTATCTCTTAATGTGTATCTACTCTGTTCTGCAGGAATATTTTTTGATACTTATGGGGAGTATTATGAAGATATGCGGGAATTTCATCAACATCTTCCTAGATTATTGAAGCCAGGTGGTATATATTCATTTTTTAATGGTCTATGTGGAGGTAATCCCTTCTTTCATATCGTATACTGTCAGCTAGTCTCTCTAGAACTTGAGAGCTTGGGATATTCTACGCAGCTGATACCATTA</genome_strand>
        <mrna_strand>CGAGGTCGTAAAGGCTCTCCTTGATGCTAGTGCCCCATGGAATGCCCTGACCCCTTCCAATGTCTCCGCCGGCGACTTCGCCATGGATGCTGGTCATCAAGAGGCTTTTGACGTTCTTCTCAATACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCCAGGCAGAATTGATCCTTGGAACAATTGCAAGGAAGGACAATGCTAAGGGGAACTCAGATGGGAACTATTTAGATGATAGAGTCACTTTTAGTGAAGATAAAATTATGGACTCTGATAGTAAGGCTATTATGATGGCTTGGGAGAAGCCATTGATGGAAGCTCATGCGAAAGCTGTCTGCTCAAATGGTGGTCACATACTGAACATTGGATTTGGGATGGGCCTTGTAGATACAGCCATACAACAATATTCACCTTTATCACACACTATTATTGAAGCTCATCCAGAGGTCTATGATCGTATGATGCGCGCAGGTTGGGGTGAGAAGGAGAATGTGAAAATCATATTTGGTCGGTGGCAAGATGTCATTTCTAAACTTGAAACCTATGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATTTTTTGATACTTATGGGGAGTATTATGAAGATATGCGGGAATTTCATCAACATCTTCCTAGATTATTGAAGCCAGGTGGTATATATTCATTTTTTAATGGTCTATGTGGAGGTAATCCCTTCTTTCATATCGTATACTGTCAGCTAGTCTCTCTAGAACTTGAGAGCTTGGGATATTCTACGCAGCTGATACCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246266" ref_strand="+" ref_description="SGN-E246266 [cLEF-40-C12]">
      <seq>cgaggtcgtaaaggctctccttgatgctagtgccccatggaatgccctgaccccttccaatgtctccgccggcgacttcgccatggatgctggtcatcaagaggcttttgacgttcttctcaataccgcaatccaggcagaattgatccttggaacaattgcaaggaaggacaatgctaaggggaactcagatgggaactatttagatgatagagtcacttttagtgaagataaaattatggactctgatagtaaggctattatgatggcttgggagaagccattgatggaagctcatgcgaaagctgtctgctcaaatggtggtcacatactgaacattggatttgggatgggccttgtagatacagccatacaacaatattcacctttatcacacactattattgaagctcatccagaggtctatgatcgtatgatgcgcgcaggttggggtgagaaggagaatgtgaaaatcatatttggtcggtggcaagatgtcatttctaaacttgaaacctatgatggaatattttttgatacttatggggagtattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="89777" stop="86629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89477" g_stop="89350" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89349" i_stop="88227" i_length="1123">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88226" g_stop="87831" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="524" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87830" i_stop="86962" i_length="869">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86961" g_stop="86929" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="557" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E246266" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89477" e_stop="89350"/>
          <exon e_start="88226" e_stop="87831"/>
          <exon e_start="86961" e_stop="86929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGTCGTAAAGGCTCTCCTTGATGCTAGTGCCCCATGGAATGCCCTGACCCCTTCCAATGTCTCCGCCGGCGACTTCGCCATGGATGCTGGTCATCAAGAGGCTTTTGACGTTCTTCTCAATACCGGTGCTTACTTTTAATCCTCGCAATCTCTTCCTTATGTTTTAGAGTTAGCTTTGGCTACTCAATAGTACATTATACGCATCATTTAAATTTTGTGTTGTAAATTTATTCAAATTGTTAATGCGTGACATTACGTAACAACAGAAATCCATACCAAATACTACACTATCCAATATAATAGATTATTATGAAACTATATGTAACAACTATCCAAACAGAATGGAATTCTATAAGACTTGTGTTTGGTTTGAGGTATAAAGAAATATATTAGTAGAGTAACTGCTGTATTACTGACACAAATTCTAGTTTTCTGATAATACATCTGCGAATTAATAATATAACTCTACTTTGCTAATACAATGTCTGACTTTCTATACGAAACTTCACATAAGTAATAACAGCATAACTAGTTTTGAGAAAAATTATGTATTATTCCAGATAGGATGTGGAATAATAATATGTGCATCTGAAGAAGTAGCTGTATAAGATGTACATCACAAAGATACTCTTAATGTAAGAGGACTTGTTTTGATATCACATTTCCGGCATAATAATCCCCATGTTGTCATCCAATGCATGATAATTCATGTACTAATACGGAACGAAACAACCTGTTAGTCTATCTTATTTAGCTGTATAATTCCTCTTGTTTTAAGCATAAGGAAAATCTGATCTCTCTTCATGTTCATATGATGATGTTTTACTCATCACATAATTTTAAGATATTAGTTGACATCTATATAGTTAACTAATGGTTGAAAATTGTTTGATGAAGAATGTTATGAGTGGATGGTGTAAACATATGGAAAATCACAAATGGAAAAGTGTGATATAACTTGGGACAAAACGACTGATTCGTATATTGTGCAGAAAATAATAATTAAGAGCAAATTGTTATGTTTCATTAATTTTTTATTATGTTGTTGTAATTGTTGTTTTTATTGTTCCCAATATGCCTGAGAGCCAACATTATATTAAAATTTGAAATTTTGCAGAGTAAAAAACTAGTATCAGAAAAGGCAACTGAAGCTGTTAATCTTCTTTATTCAGTGTGTAGTTCAACTAAAAGTTTGAGGCTGTTTAGCTTAATATTTCTGATCAAACATGTTTATTATTCAATATGTAGCAATCCAGGCAGAATTGATCCTTGGAACAATTGCAAGGAAGGACAATGCTAAGGGGAACTCAGATGGGAACTATTTAGATGATAGAGTCACTTTTAGTGAAGATAAAATTATGGACTCTGATAGTAAGGCTATTATGATGGCTTGGGAGAAGCCATTGATGGAAGCTCATGCGAAAGCTGTCTGCTCAAATGGTGGTCACATACTGAACATTGGATTTGGGATGGGCCTTGTAGATACAGCCATACAACAATATTCACCTTTATCACACACTATTATTGAAGCTCATCCAGAGGTCTATGATCGTATGATGCGCGCAGGTTGGGGTGAGAAGGAGAATGTGAAAATCATATTTGGTCGGTGGCAAGATGTCATTTCTAAACTTGAAACCTATGATGGTAAACTTCCACTTCTTCCCTTTCTATTTTTAAAAGAAGAAAAACCCCTTTATGCTGGTAATACTTCTGATTTTTAGTGTCTTGTTAGTGCATTGCTTGTTTTGATCATGAGATTCTTCCCTATACATTTTCTTTTCTGGTAAGTTTAGAAAATCACTCTCTCATCATGCCTATGAAGTATGAATGACAATATGAGAATATACTACTTCAAGGTTTCATTGCACTTAGTTTAGCGATGAAAACATGAAAACCTTTCAGGAAAACATATCAGTTTCAAGTAGAATTTCCTCTTTTTCCTCCATTCAAATTACTGCTCAATATCCCAAGTCAATAGTTGGTGCATGATTCTTATTGTCATCAATATGATACATTATTCTGAAGTTTGTACTGGTGGTTGTTAATACATTTTCTTCAAAAAATTTATGCACTATGCACAATTTTTTGTTTTTTTGTATGTTTACAGGCACTGCTGTAACATAAAATTCATTTCTCTCTAAAAACTGTGTAGGAAGTGTTTTTTAATCTTCACAAAGGAGCAATTTTCTTTTGAGCTCCTAGCTATTGATTTCATATGCTGATTCTTGCTGTTCCAATGACATAAATGCCTCACAAAACAACATACAATGCTTTTCATAACTCCGCTTGCTAGCAAAAGCAATAAGACAAATAATAAGAGTCATGAGTGTCAAGTTGGCCTACTTCTGTAACTTGATTAAGCAAAAAATTTCACTTATCCAACATTGTAATAATTGAAGATGTCAGTTAATTATATAAGCTCGGTTCTCTTTTGTTAGATTTAAGTTTAGATTCTATCTGTTGTCTTCTTTTTTCATCTTTATCTCTTAATGTGTATCTACTCTGTTCTGCAGGAATATTTTTTGATACTTATGGGGAGTATTATG</genome_strand>
        <mrna_strand>CGAGGTCGTAAAGGCTCTCCTTGATGCTAGTGCCCCATGGAATGCCCTGACCCCTTCCAATGTCTCCGCCGGCGACTTCGCCATGGATGCTGGTCATCAAGAGGCTTTTGACGTTCTTCTCAATACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCCAGGCAGAATTGATCCTTGGAACAATTGCAAGGAAGGACAATGCTAAGGGGAACTCAGATGGGAACTATTTAGATGATAGAGTCACTTTTAGTGAAGATAAAATTATGGACTCTGATAGTAAGGCTATTATGATGGCTTGGGAGAAGCCATTGATGGAAGCTCATGCGAAAGCTGTCTGCTCAAATGGTGGTCACATACTGAACATTGGATTTGGGATGGGCCTTGTAGATACAGCCATACAACAATATTCACCTTTATCACACACTATTATTGAAGCTCATCCAGAGGTCTATGATCGTATGATGCGCGCAGGTTGGGGTGAGAAGGAGAATGTGAAAATCATATTTGGTCGGTGGCAAGATGTCATTTCTAAACTTGAAACCTATGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATTTTTTGATACTTATGGGGAGTATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368596" ref_strand="+" ref_description="SGN-E368596 [TUS-23-J20]">
      <seq>ggactctgatagataggctattatgatggcttgggagaagccattgatggaagctcatgcgaaagctgtatgctcaaatggtggtcacatactgaacattggatttgggatgggccttgtagatacagccatacaacaatattcacctttatcacacactattattgaagctcatccagtaggtctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="88414" stop="87626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88114" g_stop="87926" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E368596" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88114" e_stop="87926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTCTGATAGTAAGGCTATTATGATGGCTTGGGAGAAGCCATTGATGGAAGCTCATGCGAAAGCTGTCTGCTCAAATGGTGGTCACATACTGAACATTGGATTTGGGATGGGCCTTGTAGATACAGCCATACAACAATATTCACCTTTATCACACACTATTATTGAAGCTCATCCAG-AGGTCTATGA</genome_strand>
        <mrna_strand>GGACTCTGATAGATAGGCTATTATGATGGCTTGGGAGAAGCCATTGATGGAAGCTCATGCGAAAGCTGTATGCTCAAATGGTGGTCACATACTGAACATTGGATTTGGGATGGGCCTTGTAGATACAGCCATACAACAATATTCACCTTTATCACACACTATTATTGAAGCTCATCCAGTAGGTCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323384" ref_strand="+" ref_description="SGN-E323384 [cTOC-10-K21]">
      <seq>tacaatagtaaatctgctgacgatgcaagagatagacggcatgaattttttattgcaatcgacaatcaaattaggaaagttgagaaatctcttaatgaatcagctgtttcacaaggcaaaccaccacttccatgggtgcggttggatgagggagaagtcgatgaacttgctgcatttctctctggcccatccacctcttctgcaggcataacccatgcaaaagtacatggagtggagctgcaagttcccaagtgggaagagaatgtaaatcaatcacttcttgagtgttcccagaatcctcctcattcggaggaaggtgttctangtgaggccatagacgagaagtttttaggccatcggagaacagcaagtgctagtgctgacattggtgcatggcagattgcacttggcaatgatatttccatcaaagaacctgcatcccctcctcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="95166" stop="96215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95466" g_stop="95915" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E323384" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95466" e_stop="95915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATAGTAAATCTGCTGACGATGCAAGAGATAGACACCATGAATTTTTTATTGCAATCGACAATCAAATTAGGAAAGTTGAGAAATCTCTTAATGAATCAGCTGTTTCACAAGGCAAACCACCACTTCCATGGGTGCGGTTGGATGAGGGAGAAGTCGATGAACTTGCTGCATTTCTCTCTGGCCCATCCACCTCTTCTGCAGGCATAACCCATGCAAAAGTACATGGAGTGGAGCTGCAAGTTCCCAAGTGGGAAGAGAATGTAAATCAATCACTTCTTGAGTGTTCCCAGAATCCTCCTCATTCGGAGGAAGGTGTTCTAGGTGAGGCCATAGACGAGAAGTTTTTAGGCCATCGGAGAACAGCAAGTGCTAGTGCTGACATTGGTGCATGGCAGATTGCACTTGGCAATGATATTTCCATCAAAGAACCTGCATCCCCTCCTCGC</genome_strand>
        <mrna_strand>TACAATAGTAAATCTGCTGACGATGCAAGAGATAGACGGCATGAATTTTTTATTGCAATCGACAATCAAATTAGGAAAGTTGAGAAATCTCTTAATGAATCAGCTGTTTCACAAGGCAAACCACCACTTCCATGGGTGCGGTTGGATGAGGGAGAAGTCGATGAACTTGCTGCATTTCTCTCTGGCCCATCCACCTCTTCTGCAGGCATAACCCATGCAAAAGTACATGGAGTGGAGCTGCAAGTTCCCAAGTGGGAAGAGAATGTAAATCAATCACTTCTTGAGTGTTCCCAGAATCCTCCTCATTCGGAGGAAGGTGTTCTANGTGAGGCCATAGACGAGAAGTTTTTAGGCCATCGGAGAACAGCAAGTGCTAGTGCTGACATTGGTGCATGGCAGATTGCACTTGGCAATGATATTTCCATCAAAGAACCTGCATCCCCTCCTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200951" ref_strand="+" ref_description="SGN-E200951 [cLEC-5-A17]">
      <seq>tatttccatcaaagaacctgcatcccctcctcgcagaataccaagttaccagggattgttgaatgccgtggaatctgttaaggagttaaaatggcccaagaatggttaccggaagttgaagttcaatcaagaagctgacaatacattgccgcgttctcagccaccaacaaggaacacaaacacatgctatgataggaataagagttgccttgatggttgtgatgattgttatgataagcaactgtatggttggtatggtgccgttcagcgccagctgcaaagatctcagtattacatgcaatatcgtcgacctgttcgaatagttttctcagtgtttcttctcattttcctgattgttctagtggcagtccggacaatctgagagatgaacctttattcttgtaattgatgaacttgcaatgtcgagacggtcagaggaaaaagggcctcagttttggtattaccttatagaggaaagatgtaaattacatgtaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="95582" stop="101828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95882" g_stop="96053" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96054" i_stop="96566" i_length="513">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96567" g_stop="96750" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="356" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96751" i_stop="101385" i_length="4635">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101386" g_stop="101528" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="499" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E200951" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95882" e_stop="96053"/>
          <exon e_start="96567" e_stop="96750"/>
          <exon e_start="101386" e_stop="101528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCCATCAAAGAACCTGCATCCCCTCCTCGCAGAATACCAAGTTACCAGGGATTGTTGAATGCCGTGGAATCTGTTAAGGAGTTAAAATGGCCCAAGAATGGTTACCGGAAGTTGAAGTTCAATCAAGAAGCTGACAATACATTGCCGCGTTCTCAGCCACCAACAAGGGTGATGCACTGTTCTTTATAGTATCCAGATTTGTTTTACATTACTCTCTTTGGACCATTTATTTGATTACAATGTCAAAATTCTCATTTTTGATTCATTGATATCAATTATTTCAAAATTCGAGAAAAGAGAACCTAAACAAGTAAAACAACAAATTAATCCTGTCCATTATTATGAGAATATATACTCAAAATAAATTCCATTAGGGACCAGGAATTAGAATTATGAAGTTTCGATTTAAAGAACTAAAATATGTAAAATCAGTTGGACATATCGATATAGTTTTGAGCTTTTGATAGATTGTAATACTTTTGAAGGGGAACTACATTCGCCTGTGGATATATAGAGTAAGGTTGCCAGTTTTTCTTAAAAATAAAATCAGTTGGACTTGTAAACAAACTAAATAAAATCAGTTGGAACAAGTGTAGTATTTATGAAAGATCCAGAAATAGTTGTATATTTTTCATATCAGTAAATGATGTTTATGTGAATGATCTAGTACTTCTATTGCAGAACACAAACACATGCTATGATAGGAATAAGAGTTGCCTTGATGGTTGTGATGATTGTTATGATAAGCAACTGTATGGTTGGTATGGTGCCGTTCAGCGCCAGCTGCAAAGATCTCAGTATTACATGCAATATCGTCGACCTGTTCGAATAGTTTTCTCAGTGTTTCTTCTCATTTTCCTGATTGGTGAGTTTGCTAACGACTCTTGTTTTATCTATCTAACCTTTTATTGACTCTTTTACCCATAAACAGATTTTGAAAGTACTAAGAAAAAGAAATCCTTTATAGTGTATTCTCTGCTGCTGAGGTTTTTCTTCATTCTTCTGGATTGGGAAACCATCAATAGATATTGTTGAGTTTTCTGTGCCATTGATGCTTCAATTCAAATCATTTTCCTTATTTCAGCCTGCTTGCACTGATGATTCTTTTGATTTACCTATCCTTCTATTTTCTAATAGAGACTTGAGAGAAGTTATATATATATGACAAGTAGAACTATCACAGACCCCGAGCTGCTTTTTTTTTTTTTTTTTTTTTCATGTAGAACTATTTACTATAAAAAAAACTTTCAATTGGGATCTCCCAGGGTAGAGTTAGTCGTTAAAAATAAATGGGTCATTCCATTCAACTATAATTTGGATAGGAAGTTGTTTGTAGCAAGTTCTATCCAGGGAGCAGTGGTTTGCAGCCAGTTCTCATATGTACTGGAAGGATTCCTCCATCTTGCAGCTTCTGCTCAGTCAGGGAACAGTCCTTCCTTGTAGTGATGATATATGTTAATCTAATCTATTATCAACCAAAAATTTCTTCTCTTGATATCCGTTGACATAAATAATAGCTAAAGCAAAAACTCGAATATCCTTCATTTATTCTGACTTGCTTTTTCCCCTTTTTGGCTGAAGTTCTACAGTAGCAAATAAATTCATGACATGTCAGCCCTGAGCCAACAATAGCTTGTTGCTTCCTTGACTTAACTTTTATCAGGGATACCGTTTGTTTAGAATAGTGTCCATCTCCAAAAGATTTTATGTGTGCATTGGAGTGAGTGTCAGAGACGTGGAAGAGCTCAATCTTCATTCATACTTGTCTTCTACGAGAAAAATGTTTACCCTGTGTCTCAAGTGCTACCAGCTCATACTGTGTAGGAGAGGATTGGGTGTATGCCATACAGCCATATGCAGCTTCCTCTTGTATTTCTCCAATGAATCGAACCCATGACCTTTAGTTTACCAAAGGAGCAACTCTATCCTTAAGTGAAGCCCTCCTGACTTGTCTCTCACCTGAAAGGGAAAGACTTCTCAAAGAGTATAATTTTCAAGGGAAAAACTTCCCAAAAGTATAATTTCTTCTAAATAAAGAAAATTCCCTTCAAAAGATATAATGACATTCTCGTTTCAGCAAGATTTGCAGAATCAGGAAATGTACTTATAGTCTATTTTAGAGTTGGTAACTAGAGTTTTCCCCCTTGGTGGGAAGTTTCATGAGTTCCAGTCTTTCTTTTTCTTTCATTGCAGTATGACTAATGATCATCAGAATGAACTTGATATACATCTGGTTTGTGTACAATGCTTAGAGAATGAGGCAACTAGAATAACATGGTGAGGTTCTTGAGAGAGTTGCAGGAATAAAGTGTAATGACCTTCCTGGTCATTTCTATGTTTTGCCTTCTTTGCATCATTTAGAGCATTCCTGTAGAGACCCCAAGCCATTTATGACTTGCTGGGACTGAAAGTTCGGTCACCTAACAGTTCGTTTGGTAGTGATGTGATTTTTTAGCGTTTGGAGCTTATGAACCTTGAACGATCATTTTCGATCCAAAGTTCAAGAAGATGACATCTGGACTTTAGTCAGCATTCTGAGTAAATGCGCTCGGATGTGAATTCCGTCAGCGTGGTTAGCTCAGAAATATCAAGTTTGGTCTAGATTGACCCTTTGTTCGTGTCTCGAGGCTTTTAAGCTAATTGTGAGCCCCTTTTGGATTTCGACTTAAAATGCAGTTGGGTGTGGGACCCACTTTTTGTCAAGATCACCTCGTATGGAAATTTAAACTGCGACATCGAGTCCGATATATAGAATTTGGTATGGTTGCATATCTTGTTTGAGTGCACGGGGCTCCAAAAGAGTTCTTAAGTTTTTGATAAAAATGCTAAAATCTAGTGCATATATAGCAAAATTATCTCATTATGGAAATTTAAAACAACATATCTCATTTTGGAAATGAGCTGATAATTCTGCTAATACATGCACCAAGCTTTCAGCGTTTTTTCAGAAACTTAAAAATTCCGACGGGGTGTTCCGAACTCGTTCAGAGCCCCGTGCGCGCAAACGAAATATGCATCCATACCAAATATGATATACTAGACTCCATGACGCAATCTAAATTTCCATTCAAGGTTGACAAAAAGTGGGTTCCACACCCAACCGCCATTTAAGTCAAAATCCACTAGAGACTCGGAATTAGCTCTGGACGCGAACAAAGGGTCAAACTCGACATTTTGGAGCTAATCGCGTTGATGGAATTCACATTCGATCACGGTTACTCAGAATGTTGACTAAAGTCAAACTTAGGCTTAAACTTTTAAGTTAAAACGCCTAATCGTATCGACTCACACTGAAAACCTTGGGAGTCATGCCGACCATGCTTCTAGCCTTAATGACCCTTCCGAAGCTGATGGAATAGTTAGAATTGGATTTAGATGTCCTCTTTTGATTGAAAATGATCGTTTAAGATATATAAGCTCCAAAAACTAGAAAATCGCATAACTATCAAACGAACTGTCAGTCCCAGCTTGAGGTAGCTACAGGAACACACAGAAGGCAAAACACAGAAATGACATAGATAATCTTTTGTAGAAATTTGGCACTTGCACCAAGAAAGAGAGCTAGGTAATTACCTTTTAGTTCCCTGTGATTTCATAGCATTGCAGCTTCTGCTAAACTAAGCTCCTTTTTTTTTGTTTTCTGCTACAAATCTTGAATACATATTCTGCATTTGAGAGGTATACCGTATACCGAACAAGTAACCTTTTTTCTTCTTACGTCCACTCCTTCCAATCAAAAGAAAGAAAAAAAAGCAAAGAGTACCTGCTCTGTAGATACACATTCGTTATTTCTTTCATTGTTTTTTTCTTGGGAATTGATTTCTTTCTGTATAGCATCTCTCCAGCAAGAATGATTGGAGACTTCAACAAATGATTCAGGTTCATGTGAAGATTGAGCTGAGATGAGGTAAGCTCAAACTTTTGCAAACCAGACCCGGTCTTTCTTGGAATCCAGAATTTGCCAATAACTAACTGAACTAATCCATATGTGTCTCTCTCCTATCGCTCGCTACTAGACTAATAGTTGAAGTAATGAATGGAAAACTATAGTTGCTAGGAATGCTTCGGAGATATTATGGGAAATCGAAAATGTTGAAGTGTTGACTTATAAATAGGAAGATGAGGAGATACAGGGTGAATGATATTCAGCAAGATTTGTATTCATTCACAGAGGAATTCAACTTTGAAAAGGAGAAGGACTGTTCCAAACAAAAGAACCCGTATCAAGTCCCAAGTCCTTGTGTCTGCTGAATGCTTACTTTTTTCTTGAGTCTGTTGGCAGAAGGGCTACTAGCGTGGAAGACTCCTTTGGCAGAGACAATGGCACCATCTGAGGAAGAATAGGATTTTATTCCCTGGCAAAGGGAAGAAGTTTCATTTCCAGCCATAGACACCTATACAATCATTGACTTCACAATTTGACTGCCCTATCTTTGATGAGATCCCAAATATCAGTAGTCTATGGTTGTCTGTTAGTAGATGCCACCAAATCTACCAATACTTATATAGCTTGTATTGCCAAACTTCCAAAAATCTGCTCATTTTGAGAAGTGTTTTTTGTTAGAATTGCTTTTACAAACAGTATGTTTGGATAGCAGTAGTTTGCATTTGGCTTATCATTTAAAAGCACTTTTGCCAATATTAGATAAGTAATTAGTGCTTGGTTAAGGTTCCAAAGGTGCTTCGGGAGAAAAAAACTACTTTTTAGCTTCTTAAAAACAACTTTTGCTACTACTCAGAAACACTTATTTTGTTCTTAAAAGTTTGGCCAAACTCCTCGATTCTCTATAATATGCATATTTAAAATAACACTTGACTTTCCAAAAGCTTGGACAAACATGCTATTAGTTTGATTCTGCTTCGGGCGTTCTCCTCTCCCCAACAGGACCACAGAGCATCACTAAAATATTGATGCTAAGTACAGTGGAGCACATGTGTTGGTCAAACAAAATAACCTAGCTCTTTACCCGGTACTTGTGCTGGCGGGAGGTAGCAGGAACTGGTGGAAGCCGAGTTCGTACACCACTGTTATTAAAAAAGAAATGGTGTTGTTGAAGCAACTTACATATTTCAAATTGTAGGATGTTTGGGGTATTGCTATTTCTTTCTTTGATAGAAAATCAGTATAAACCAACATATCTTAACGTCTCTTGGACAGTTCACACCATAAATGACAATTTATGGAACCGTAAATTGCTTGTAAAATCAGCTATAGCTCCATCGATGGCCCCCCTTGTTAACAAGATATGCAGTAACTATGTTAGTTTATTTCCTACTCGCAAATATCATTGCCTTTTAAGGTAAGATTGTACTGTCATAAAGTAGATAGATCTGAAACCTGTAGTGCCAGTGTGCATCCATTTTAGTATTACGTTGGGCTACATACATATATGTTTTACAATAATTTTGGCCGTGTATATTTGTATTGGTGATAATCATTAGACATAAAACTGAGTTTCATTTGTTAGTTGGTGCCTGAATTATTTTTTCCCTGCTGCAGTTCTAGTGGCAGTCCGGACAATCTGAGAGATGAACCTTTATTCTTGTAATTGATGAACTTGCAATGTCGAGACGGTCAGAGGAAAAAGGGCCTCAGTTTTGGTATTACCTTATAGAGGAAAGATGTAAATTACATGTAATTTT</genome_strand>
        <mrna_strand>TATTTCCATCAAAGAACCTGCATCCCCTCCTCGCAGAATACCAAGTTACCAGGGATTGTTGAATGCCGTGGAATCTGTTAAGGAGTTAAAATGGCCCAAGAATGGTTACCGGAAGTTGAAGTTCAATCAAGAAGCTGACAATACATTGCCGCGTTCTCAGCCACCAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACAAACACATGCTATGATAGGAATAAGAGTTGCCTTGATGGTTGTGATGATTGTTATGATAAGCAACTGTATGGTTGGTATGGTGCCGTTCAGCGCCAGCTGCAAAGATCTCAGTATTACATGCAATATCGTCGACCTGTTCGAATAGTTTTCTCAGTGTTTCTTCTCATTTTCCTGATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAGTGGCAGTCCGGACAATCTGAGAGATGAACCTTTATTCTTGTAATTGATGAACTTGCAATGTCGAGACGGTCAGAGGAAAAAGGGCCTCAGTTTTGGTATTACCTTATAGAGGAAAGATGTAAATTACATGTAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296241" ref_strand="+" ref_description="SGN-E296241 [cLET-24-D4]">
      <seq>caagaatggttaccggaagttgaagttcaatcaagaagctgacaatacattgccgcgttctcagccaccaacaaggaacacaaacacatgctatgataggaataagagttgccttgatggttgtgatgattgttatgataagcaactgtatggttggtatggtgccgttcagcgccagctgcaaagatctcagtattacatgcaatatcgtcgacctgttcgaatagttttctcagtgtttcttctcattttcctgattggtgagtttgctaacgactcttgttttatctatctaaccttttattgactcttttacccataaacagattttgaaagtactaagaaaaagaaatcctttatagtgtattctctgctgctgaggtttttcttcattcttctggattgggaaaccatcaatagatattgttgagttttctgtgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="95678" stop="97233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95978" g_stop="96053" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96054" i_stop="96566" i_length="513">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96567" g_stop="96940" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="450" r_length="374" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E296241" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95978" e_stop="96053"/>
          <exon e_start="96567" e_stop="96940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATGGTTACCGGAAGTTGAAGTTCAATCAAGAAGCTGACAATACATTGCCGCGTTCTCAGCCACCAACAAGGGTGATGCACTGTTCTTTATAGTATCCAGATTTGTTTTACATTACTCTCTTTGGACCATTTATTTGATTACAATGTCAAAATTCTCATTTTTGATTCATTGATATCAATTATTTCAAAATTCGAGAAAAGAGAACCTAAACAAGTAAAACAACAAATTAATCCTGTCCATTATTATGAGAATATATACTCAAAATAAATTCCATTAGGGACCAGGAATTAGAATTATGAAGTTTCGATTTAAAGAACTAAAATATGTAAAATCAGTTGGACATATCGATATAGTTTTGAGCTTTTGATAGATTGTAATACTTTTGAAGGGGAACTACATTCGCCTGTGGATATATAGAGTAAGGTTGCCAGTTTTTCTTAAAAATAAAATCAGTTGGACTTGTAAACAAACTAAATAAAATCAGTTGGAACAAGTGTAGTATTTATGAAAGATCCAGAAATAGTTGTATATTTTTCATATCAGTAAATGATGTTTATGTGAATGATCTAGTACTTCTATTGCAGAACACAAACACATGCTATGATAGGAATAAGAGTTGCCTTGATGGTTGTGATGATTGTTATGATAAGCAACTGTATGGTTGGTATGGTGCCGTTCAGCGCCAGCTGCAAAGATCTCAGTATTACATGCAATATCGTCGACCTGTTCGAATAGTTTTCTCAGTGTTTCTTCTCATTTTCCTGATTGGTGAGTTTGCTAACGACTCTTGTTTTATCTATCTAACCTTTTATTGACTCTTTTACCCATAAACAGATTTTGAAAGTACTAAGAAAAAGAAATCCTTTATAGTGTATTCTCTGCTGCTGAGGTTTTTCTTCATTCTTCTGGATTGGGAAACCATCAATAGATATTGTTGAGTTTTCTGTGCCATTGATGC</genome_strand>
        <mrna_strand>CAAGAATGGTTACCGGAAGTTGAAGTTCAATCAAGAAGCTGACAATACATTGCCGCGTTCTCAGCCACCAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACAAACACATGCTATGATAGGAATAAGAGTTGCCTTGATGGTTGTGATGATTGTTATGATAAGCAACTGTATGGTTGGTATGGTGCCGTTCAGCGCCAGCTGCAAAGATCTCAGTATTACATGCAATATCGTCGACCTGTTCGAATAGTTTTCTCAGTGTTTCTTCTCATTTTCCTGATTGGTGAGTTTGCTAACGACTCTTGTTTTATCTATCTAACCTTTTATTGACTCTTTTACCCATAAACAGATTTTGAAAGTACTAAGAAAAAGAAATCCTTTATAGTGTATTCTCTGCTGCTGAGGTTTTTCTTCATTCTTCTGGATTGGGAAACCATCAATAGATATTGTTGAGTTTTCTGTGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211347" ref_strand="+" ref_description="SGN-E211347 [cLEC-70-J20]">
      <seq>aacacaaacacatgctatgataggaataagagttgccttgatggttgtgatgattgttatgataagcaactgtatggttggtatggtgccgttcagcgccagctgcaaagatctcagtattacatgcaatatcgtcgacctgttcgaatagttttctcagtgtttcttctcattttcctgattgcatctctccagcaagaatgattggagacttcaacaaatgattcaggttcatgtgaagattgagctgagatgagttctagtggcagtccggacaatctgagagatgaacctttattcttgtaattgatgaacttgcaatgtcgagacggtcagaggaaaaagggcctcagttttggtattaccttatagaggaaagatgtaaattacatgtaattttgttcaagtgatgcaaagctggtgctattatctcaacatactttgtagtaataccttatcaccattagtggagaccaaattatgttgtattatgatattccgtccatcagaaacaacttctctacctctaaggtaaaggtaaggtgtgcgtctcctccaaaccccattctgtangattacactggctatgttgttgtatacagaaatgaaagagatgattaggtctatttgacttgctaaatcatgtatattattgtattactgtaattcactttctggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="96267" stop="102108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96567" g_stop="96750" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96751" i_stop="99719" i_length="2969">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99720" g_stop="99792" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="257" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99793" i_stop="101385" i_length="1593">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101386" g_stop="101808" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="680" r_length="423" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E211347" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96567" e_stop="96750"/>
          <exon e_start="99720" e_stop="99792"/>
          <exon e_start="101386" e_stop="101808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACAAACACATGCTATGATAGGAATAAGAGTTGCCTTGATGGTTGTGATGATTGTTATGATAAGCAACTGTATGGTTGGTATGGTGCCGTTCAGCGCCAGCTGCAAAGATCTCAGTATTACATGCAATATCGTCGACCTGTTCGAATAGTTTTCTCAGTGTTTCTTCTCATTTTCCTGATTGGTGAGTTTGCTAACGACTCTTGTTTTATCTATCTAACCTTTTATTGACTCTTTTACCCATAAACAGATTTTGAAAGTACTAAGAAAAAGAAATCCTTTATAGTGTATTCTCTGCTGCTGAGGTTTTTCTTCATTCTTCTGGATTGGGAAACCATCAATAGATATTGTTGAGTTTTCTGTGCCATTGATGCTTCAATTCAAATCATTTTCCTTATTTCAGCCTGCTTGCACTGATGATTCTTTTGATTTACCTATCCTTCTATTTTCTAATAGAGACTTGAGAGAAGTTATATATATATGACAAGTAGAACTATCACAGACCCCGAGCTGCTTTTTTTTTTTTTTTTTTTTTCATGTAGAACTATTTACTATAAAAAAAACTTTCAATTGGGATCTCCCAGGGTAGAGTTAGTCGTTAAAAATAAATGGGTCATTCCATTCAACTATAATTTGGATAGGAAGTTGTTTGTAGCAAGTTCTATCCAGGGAGCAGTGGTTTGCAGCCAGTTCTCATATGTACTGGAAGGATTCCTCCATCTTGCAGCTTCTGCTCAGTCAGGGAACAGTCCTTCCTTGTAGTGATGATATATGTTAATCTAATCTATTATCAACCAAAAATTTCTTCTCTTGATATCCGTTGACATAAATAATAGCTAAAGCAAAAACTCGAATATCCTTCATTTATTCTGACTTGCTTTTTCCCCTTTTTGGCTGAAGTTCTACAGTAGCAAATAAATTCATGACATGTCAGCCCTGAGCCAACAATAGCTTGTTGCTTCCTTGACTTAACTTTTATCAGGGATACCGTTTGTTTAGAATAGTGTCCATCTCCAAAAGATTTTATGTGTGCATTGGAGTGAGTGTCAGAGACGTGGAAGAGCTCAATCTTCATTCATACTTGTCTTCTACGAGAAAAATGTTTACCCTGTGTCTCAAGTGCTACCAGCTCATACTGTGTAGGAGAGGATTGGGTGTATGCCATACAGCCATATGCAGCTTCCTCTTGTATTTCTCCAATGAATCGAACCCATGACCTTTAGTTTACCAAAGGAGCAACTCTATCCTTAAGTGAAGCCCTCCTGACTTGTCTCTCACCTGAAAGGGAAAGACTTCTCAAAGAGTATAATTTTCAAGGGAAAAACTTCCCAAAAGTATAATTTCTTCTAAATAAAGAAAATTCCCTTCAAAAGATATAATGACATTCTCGTTTCAGCAAGATTTGCAGAATCAGGAAATGTACTTATAGTCTATTTTAGAGTTGGTAACTAGAGTTTTCCCCCTTGGTGGGAAGTTTCATGAGTTCCAGTCTTTCTTTTTCTTTCATTGCAGTATGACTAATGATCATCAGAATGAACTTGATATACATCTGGTTTGTGTACAATGCTTAGAGAATGAGGCAACTAGAATAACATGGTGAGGTTCTTGAGAGAGTTGCAGGAATAAAGTGTAATGACCTTCCTGGTCATTTCTATGTTTTGCCTTCTTTGCATCATTTAGAGCATTCCTGTAGAGACCCCAAGCCATTTATGACTTGCTGGGACTGAAAGTTCGGTCACCTAACAGTTCGTTTGGTAGTGATGTGATTTTTTAGCGTTTGGAGCTTATGAACCTTGAACGATCATTTTCGATCCAAAGTTCAAGAAGATGACATCTGGACTTTAGTCAGCATTCTGAGTAAATGCGCTCGGATGTGAATTCCGTCAGCGTGGTTAGCTCAGAAATATCAAGTTTGGTCTAGATTGACCCTTTGTTCGTGTCTCGAGGCTTTTAAGCTAATTGTGAGCCCCTTTTGGATTTCGACTTAAAATGCAGTTGGGTGTGGGACCCACTTTTTGTCAAGATCACCTCGTATGGAAATTTAAACTGCGACATCGAGTCCGATATATAGAATTTGGTATGGTTGCATATCTTGTTTGAGTGCACGGGGCTCCAAAAGAGTTCTTAAGTTTTTGATAAAAATGCTAAAATCTAGTGCATATATAGCAAAATTATCTCATTATGGAAATTTAAAACAACATATCTCATTTTGGAAATGAGCTGATAATTCTGCTAATACATGCACCAAGCTTTCAGCGTTTTTTCAGAAACTTAAAAATTCCGACGGGGTGTTCCGAACTCGTTCAGAGCCCCGTGCGCGCAAACGAAATATGCATCCATACCAAATATGATATACTAGACTCCATGACGCAATCTAAATTTCCATTCAAGGTTGACAAAAAGTGGGTTCCACACCCAACCGCCATTTAAGTCAAAATCCACTAGAGACTCGGAATTAGCTCTGGACGCGAACAAAGGGTCAAACTCGACATTTTGGAGCTAATCGCGTTGATGGAATTCACATTCGATCACGGTTACTCAGAATGTTGACTAAAGTCAAACTTAGGCTTAAACTTTTAAGTTAAAACGCCTAATCGTATCGACTCACACTGAAAACCTTGGGAGTCATGCCGACCATGCTTCTAGCCTTAATGACCCTTCCGAAGCTGATGGAATAGTTAGAATTGGATTTAGATGTCCTCTTTTGATTGAAAATGATCGTTTAAGATATATAAGCTCCAAAAACTAGAAAATCGCATAACTATCAAACGAACTGTCAGTCCCAGCTTGAGGTAGCTACAGGAACACACAGAAGGCAAAACACAGAAATGACATAGATAATCTTTTGTAGAAATTTGGCACTTGCACCAAGAAAGAGAGCTAGGTAATTACCTTTTAGTTCCCTGTGATTTCATAGCATTGCAGCTTCTGCTAAACTAAGCTCCTTTTTTTTTGTTTTCTGCTACAAATCTTGAATACATATTCTGCATTTGAGAGGTATACCGTATACCGAACAAGTAACCTTTTTTCTTCTTACGTCCACTCCTTCCAATCAAAAGAAAGAAAAAAAAGCAAAGAGTACCTGCTCTGTAGATACACATTCGTTATTTCTTTCATTGTTTTTTTCTTGGGAATTGATTTCTTTCTGTATAGCATCTCTCCAGCAAGAATGATTGGAGACTTCAACAAATGATTCAGGTTCATGTGAAGATTGAGCTGAGATGAGGTAAGCTCAAACTTTTGCAAACCAGACCCGGTCTTTCTTGGAATCCAGAATTTGCCAATAACTAACTGAACTAATCCATATGTGTCTCTCTCCTATCGCTCGCTACTAGACTAATAGTTGAAGTAATGAATGGAAAACTATAGTTGCTAGGAATGCTTCGGAGATATTATGGGAAATCGAAAATGTTGAAGTGTTGACTTATAAATAGGAAGATGAGGAGATACAGGGTGAATGATATTCAGCAAGATTTGTATTCATTCACAGAGGAATTCAACTTTGAAAAGGAGAAGGACTGTTCCAAACAAAAGAACCCGTATCAAGTCCCAAGTCCTTGTGTCTGCTGAATGCTTACTTTTTTCTTGAGTCTGTTGGCAGAAGGGCTACTAGCGTGGAAGACTCCTTTGGCAGAGACAATGGCACCATCTGAGGAAGAATAGGATTTTATTCCCTGGCAAAGGGAAGAAGTTTCATTTCCAGCCATAGACACCTATACAATCATTGACTTCACAATTTGACTGCCCTATCTTTGATGAGATCCCAAATATCAGTAGTCTATGGTTGTCTGTTAGTAGATGCCACCAAATCTACCAATACTTATATAGCTTGTATTGCCAAACTTCCAAAAATCTGCTCATTTTGAGAAGTGTTTTTTGTTAGAATTGCTTTTACAAACAGTATGTTTGGATAGCAGTAGTTTGCATTTGGCTTATCATTTAAAAGCACTTTTGCCAATATTAGATAAGTAATTAGTGCTTGGTTAAGGTTCCAAAGGTGCTTCGGGAGAAAAAAACTACTTTTTAGCTTCTTAAAAACAACTTTTGCTACTACTCAGAAACACTTATTTTGTTCTTAAAAGTTTGGCCAAACTCCTCGATTCTCTATAATATGCATATTTAAAATAACACTTGACTTTCCAAAAGCTTGGACAAACATGCTATTAGTTTGATTCTGCTTCGGGCGTTCTCCTCTCCCCAACAGGACCACAGAGCATCACTAAAATATTGATGCTAAGTACAGTGGAGCACATGTGTTGGTCAAACAAAATAACCTAGCTCTTTACCCGGTACTTGTGCTGGCGGGAGGTAGCAGGAACTGGTGGAAGCCGAGTTCGTACACCACTGTTATTAAAAAAGAAATGGTGTTGTTGAAGCAACTTACATATTTCAAATTGTAGGATGTTTGGGGTATTGCTATTTCTTTCTTTGATAGAAAATCAGTATAAACCAACATATCTTAACGTCTCTTGGACAGTTCACACCATAAATGACAATTTATGGAACCGTAAATTGCTTGTAAAATCAGCTATAGCTCCATCGATGGCCCCCCTTGTTAACAAGATATGCAGTAACTATGTTAGTTTATTTCCTACTCGCAAATATCATTGCCTTTTAAGGTAAGATTGTACTGTCATAAAGTAGATAGATCTGAAACCTGTAGTGCCAGTGTGCATCCATTTTAGTATTACGTTGGGCTACATACATATATGTTTTACAATAATTTTGGCCGTGTATATTTGTATTGGTGATAATCATTAGACATAAAACTGAGTTTCATTTGTTAGTTGGTGCCTGAATTATTTTTTCCCTGCTGCAGTTCTAGTGGCAGTCCGGACAATCTGAGAGATGAACCTTTATTCTTGTAATTGATGAACTTGCAATGTCGAGACGGTCAGAGGAAAAAGGGCCTCAGTTTTGGTATTACCTTATAGAGGAAAGATGTAAATTACATGTAATTTTGTTCAGGTGATGCAAAGCTGGTGCTATTATCTCAACATACTTTGTAGTAATACCTTATCACCATTAGTGGAGACCAAATTATGTTGTATTATGATATTCCGTCCATCAGAAACAACTTCTCTACCTCTAAGGTAAAGGTAAGGTGTGCGTCTCCTCCAAACCCCATTCTGTAGGATTACACTGGCTATGTTGTTGTATACAGAAATGAAAGAGATGATTAGGTCTATTTGACTTGCTAAATCATGTATATTATTGTATTACTGTAATTCACTTCTGGGTT</genome_strand>
        <mrna_strand>AACACAAACACATGCTATGATAGGAATAAGAGTTGCCTTGATGGTTGTGATGATTGTTATGATAAGCAACTGTATGGTTGGTATGGTGCCGTTCAGCGCCAGCTGCAAAGATCTCAGTATTACATGCAATATCGTCGACCTGTTCGAATAGTTTTCTCAGTGTTTCTTCTCATTTTCCTGATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCTCCAGCAAGAATGATTGGAGACTTCAACAAATGATTCAGGTTCATGTGAAGATTGAGCTGAGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAGTGGCAGTCCGGACAATCTGAGAGATGAACCTTTATTCTTGTAATTGATGAACTTGCAATGTCGAGACGGTCAGAGGAAAAAGGGCCTCAGTTTTGGTATTACCTTATAGAGGAAAGATGTAAATTACATGTAATTTTGTTCAAGTGATGCAAAGCTGGTGCTATTATCTCAACATACTTTGTAGTAATACCTTATCACCATTAGTGGAGACCAAATTATGTTGTATTATGATATTCCGTCCATCAGAAACAACTTCTCTACCTCTAAGGTAAAGGTAAGGTGTGCGTCTCCTCCAAACCCCATTCTGTANGATTACACTGGCTATGTTGTTGTATACAGAAATGAAAGAGATGATTAGGTCTATTTGACTTGCTAAATCATGTATATTATTGTATTACTGTAATTCACTTTCTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286705" ref_strand="-" ref_description="SGN-E286705 [cLES-14-D3]">
      <seq>tcattttcctgattgcatctctccagcaagaatgattggagacttcaacaaatgattcaggttcatgtgaagattgagctgagatgagttctagtggcagtccggacaatctgagagatgaacctttattcttgtaattgatgaacttgcaatgtcgagacggtcagaggaaaaagggcctcagttttggtattaccttatagaggaaagatgtaaattacatgtaattttgttcaggtgatgcaaagctggtgctattatctcaacatactttgtagtaataccttatcaccattagtggagaccaaattatgttgtattatgatattccgtccatcagaaacaacttctctacctttaaggtaaaggtaaggtgtgcgtctcctccaaaccccattctgtaggattacactggctatgttgttgtatacagaaatgaaagagatgattaggtctatttgacttgctaaatcatgtatattattgtaatactgtaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="99401" stop="102094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99720" g_stop="99792" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="88" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99793" i_stop="101385" i_length="1593">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101386" g_stop="101793" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="496" r_length="408" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="497" polyA_stop="519"/>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E286705" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286705" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99720" e_stop="99792"/>
          <exon e_start="101386" e_stop="101793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCTCCAGCAAGAATGATTGGAGACTTCAACAAATGATTCAGGTTCATGTGAAGATTGAGCTGAGATGAGGTAAGCTCAAACTTTTGCAAACCAGACCCGGTCTTTCTTGGAATCCAGAATTTGCCAATAACTAACTGAACTAATCCATATGTGTCTCTCTCCTATCGCTCGCTACTAGACTAATAGTTGAAGTAATGAATGGAAAACTATAGTTGCTAGGAATGCTTCGGAGATATTATGGGAAATCGAAAATGTTGAAGTGTTGACTTATAAATAGGAAGATGAGGAGATACAGGGTGAATGATATTCAGCAAGATTTGTATTCATTCACAGAGGAATTCAACTTTGAAAAGGAGAAGGACTGTTCCAAACAAAAGAACCCGTATCAAGTCCCAAGTCCTTGTGTCTGCTGAATGCTTACTTTTTTCTTGAGTCTGTTGGCAGAAGGGCTACTAGCGTGGAAGACTCCTTTGGCAGAGACAATGGCACCATCTGAGGAAGAATAGGATTTTATTCCCTGGCAAAGGGAAGAAGTTTCATTTCCAGCCATAGACACCTATACAATCATTGACTTCACAATTTGACTGCCCTATCTTTGATGAGATCCCAAATATCAGTAGTCTATGGTTGTCTGTTAGTAGATGCCACCAAATCTACCAATACTTATATAGCTTGTATTGCCAAACTTCCAAAAATCTGCTCATTTTGAGAAGTGTTTTTTGTTAGAATTGCTTTTACAAACAGTATGTTTGGATAGCAGTAGTTTGCATTTGGCTTATCATTTAAAAGCACTTTTGCCAATATTAGATAAGTAATTAGTGCTTGGTTAAGGTTCCAAAGGTGCTTCGGGAGAAAAAAACTACTTTTTAGCTTCTTAAAAACAACTTTTGCTACTACTCAGAAACACTTATTTTGTTCTTAAAAGTTTGGCCAAACTCCTCGATTCTCTATAATATGCATATTTAAAATAACACTTGACTTTCCAAAAGCTTGGACAAACATGCTATTAGTTTGATTCTGCTTCGGGCGTTCTCCTCTCCCCAACAGGACCACAGAGCATCACTAAAATATTGATGCTAAGTACAGTGGAGCACATGTGTTGGTCAAACAAAATAACCTAGCTCTTTACCCGGTACTTGTGCTGGCGGGAGGTAGCAGGAACTGGTGGAAGCCGAGTTCGTACACCACTGTTATTAAAAAAGAAATGGTGTTGTTGAAGCAACTTACATATTTCAAATTGTAGGATGTTTGGGGTATTGCTATTTCTTTCTTTGATAGAAAATCAGTATAAACCAACATATCTTAACGTCTCTTGGACAGTTCACACCATAAATGACAATTTATGGAACCGTAAATTGCTTGTAAAATCAGCTATAGCTCCATCGATGGCCCCCCTTGTTAACAAGATATGCAGTAACTATGTTAGTTTATTTCCTACTCGCAAATATCATTGCCTTTTAAGGTAAGATTGTACTGTCATAAAGTAGATAGATCTGAAACCTGTAGTGCCAGTGTGCATCCATTTTAGTATTACGTTGGGCTACATACATATATGTTTTACAATAATTTTGGCCGTGTATATTTGTATTGGTGATAATCATTAGACATAAAACTGAGTTTCATTTGTTAGTTGGTGCCTGAATTATTTTTTCCCTGCTGCAGTTCTAGTGGCAGTCCGGACAATCTGAGAGATGAACCTTTATTCTTGTAATTGATGAACTTGCAATGTCGAGACGGTCAGAGGAAAAAGGGCCTCAGTTTTGGTATTACCTTATAGAGGAAAGATGTAAATTACATGTAATTTTGTTCAGGTGATGCAAAGCTGGTGCTATTATCTCAACATACTTTGTAGTAATACCTTATCACCATTAGTGGAGACCAAATTATGTTGTATTATGATATTCCGTCCATCAGAAACAACTTCTCTACCTCTAAGGTAAAGGTAAGGTGTGCGTCTCCTCCAAACCCCATTCTGTAGGATTACACTGGCTATGTTGTTGTATACAGAAATGAAAGAGATGATTAGGTCTATTTGACTTGCTAAATCATGTATATTATTGTATTACTGTA</genome_strand>
        <mrna_strand>CATCTCTCCAGCAAGAATGATTGGAGACTTCAACAAATGATTCAGGTTCATGTGAAGATTGAGCTGAGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAGTGGCAGTCCGGACAATCTGAGAGATGAACCTTTATTCTTGTAATTGATGAACTTGCAATGTCGAGACGGTCAGAGGAAAAAGGGCCTCAGTTTTGGTATTACCTTATAGAGGAAAGATGTAAATTACATGTAATTTTGTTCAGGTGATGCAAAGCTGGTGCTATTATCTCAACATACTTTGTAGTAATACCTTATCACCATTAGTGGAGACCAAATTATGTTGTATTATGATATTCCGTCCATCAGAAACAACTTCTCTACCTTTAAGGTAAAGGTAAGGTGTGCGTCTCCTCCAAACCCCATTCTGTAGGATTACACTGGCTATGTTGTTGTATACAGAAATGAAAGAGATGATTAGGTCTATTTGACTTGCTAAATCATGTATATTATTGTAATACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623653" ref_strand="+" ref_description="SGN-E623653 [88748]">
      <seq>cctttctcaagttgcacaacacaagtcaaagcaagattgctggatcatcatccatggcagagtaatagacgtaacgaagtttcttgaagaacatcctggaggagaagaagtgttgattgaatcagctggaaaggatgcaactaaagaatttgaagatataggacatagtaaagctgccaagaactatatcttgaaataccagattggatatcttcaaggctataaaatccaagatgatgatgatgataatttgtttactgattccaacaaagaaccaataaagacaaaagaaattgaagcttttgtgatcaaacaaaactccaagcccaagtatctggttattgttgagtatattgtgcctttcttggctgctgcattctttctgtattatcgatatctcaatggagctctccagctttgaactcccacaacaaagggattatcatatgattttcattgatactaagtgtttatttcaaacttcaaatagggggagaaacctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="102883" stop="101680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102583" g_stop="102523" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102522" i_stop="102423" i_length="100">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102422" g_stop="101976" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="504" r_length="443" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E623653" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102583" e_stop="102523"/>
          <exon e_start="102422" e_stop="101976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTCAAGTTGCACAACACAAGTCAAAGCAAGATTGCTGGATTATCATCCATGGCAGAGTACTATCTCCACCCTTCCCCGGGAACGTTACTAGCATGTTTGACTTAACTCACTGTTTTCTTGGACGCCTTAATCATCTTATGTTGTGTTTTTTTTCAGATAATAGACGTTACGAAGTTTCTTGAAGAACATCCTGGAGGAGAAGAAGTGTTGATTGAATCAGCTGGAAAGGATGCAACTAAAGAATTTGAAGATATTGGGCATAGTAAAGCTGCCAAGAACTATATCTTGAAATACCAGATTGGAAATCTTCAAGGCTATAAAATTCAAGATGATGATGATGATGATAATTTGTTTACTCATTCCAACAAAGAACCAATAAAGGCAAAAGAAATTGAAGCTTTTGTGATCAAACAAAACTTCAAGCCCAAGCATTTGTTTTTTTTTGAGTATTTTGTGCCTTTCTTGGCTGCAGCATTCTTTCTGTATTATCGATATCTCAATGGAGCACTCCAGCTTTGAACACCCACAACAAAGGGATTATCATATGATTTTCATTGATATTAAGTGTTCTTTTTCAACCTTCAAAAAGGGGGAAACCCCATA</genome_strand>
        <mrna_strand>CCTTTCTCAAGTTGCACAACACAAGTCAAAGCAAGATTGCTGGATCATCATCCATGGCAGA....................................................................................................GTAATAGACGTAACGAAGTTTCTTGAAGAACATCCTGGAGGAGAAGAAGTGTTGATTGAATCAGCTGGAAAGGATGCAACTAAAGAATTTGAAGATATAGGACATAGTAAAGCTGCCAAGAACTATATCTTGAAATACCAGATTGGATATCTTCAAGGCTATAAAA-TCCA-A-GATGATGATGATGATAATTTGTTTACTGATTCCAACAAAGAACCAATAAAGACAAAAGAAATTGAAGCTTTTGTGATCAAACAAAACTCCAAGCCCAAGTATCTGGTTATTGTTGAGTATATTGTGCCTTTCTTGGCTGCTGCATTCTTTCTGTATTATCGATATCTCAATGGAGCTCTCCAGCTTTGAACTCCCACAACAAAGGGATTATCATATGATTTTCATTGATACTAAGTGTT-TATTTCAAACTTCAAATAGGGGGAGAAACCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611541" ref_strand="+" ref_description="SGN-E611541 [61293]">
      <seq>gtcaccctttctcaagttgcacaacacaagtcaaagcaagattgctggatcatcatccatggcagagtaatagacgttacgaagtttctggaagaacatcctggaggagaagaagtgttgattgaatcagctggaaaggatgcaactaaagaatttgaagatattggacatagtaaagctgccaagaactatatcttgaaataccagactggatatcttcaaggctataaaatccaagatgatgatgatgataatttgtttactgattcctacaaagaaccaatgaaggcaaaagaaattgaagcttttgtgatcaaacaaaactccaagcccaagcatttggtttttgttgagtattttgtgcctttcttggctgctgcattcttcctgtattatcgatatctcaatggagctctccagctttgaactcccacaacaaagggattatcatatgattttcattgatatttagtgttttatttcaaccttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="102887" stop="101691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102588" g_stop="102523" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102522" i_stop="102423" i_length="100">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102422" g_stop="101986" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="500" r_length="434" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E611541" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102588" e_stop="102523"/>
          <exon e_start="102422" e_stop="101986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCCTTTCTCAAGTTGCACAACACAAGTCAAAGCAAGATTGCTGGATTATCATCCATGGCAGAGTACTATCTCCACCCTTCCCCGGGAACGTTACTAGCATGTTTGACTTAACTCACTGTTTTCTTGGACGCCTTAATCATCTTATGTTGTGTTTTTTTTCAGATAATAGACGTTACGAAGTTTCTTGAAGAACATCCTGGAGGAGAAGAAGTGTTGATTGAATCAGCTGGAAAGGATGCAACTAAAGAATTTGAAGATATTGGGCATAGTAAAGCTGCCAAGAACTATATCTTGAAATACCAGATTGGAAATCTTCAAGGCTATAAAATTCAAGATGATGATGATGATGATAATTTGTTTACTCATTCCAACAAAGAACCAATAAAGGCAAAAGAAATTGAAGCTTTTGTGATCAAACAAAACTTCAAGCCCAAGCATTTGTTTTTTTTTGAGTATTTTGTGCCTTTCTTGGCTGCAGCATTCTTTCTGTATTATCGATATCTCAATGGAGCACTCCAGCTTTGAACACCCACAACAAAGGGATTATCATATGATTTTCATTGATATTAAGTGTTCTTTTTCAACCTTCAAAAAGGGGG</genome_strand>
        <mrna_strand>GTCACCCTTTCTCAAGTTGCACAACACAAGTCAAAGCAAGATTGCTGGATCATCATCCATGGCAGA....................................................................................................GTAATAGACGTTACGAAGTTTCTGGAAGAACATCCTGGAGGAGAAGAAGTGTTGATTGAATCAGCTGGAAAGGATGCAACTAAAGAATTTGAAGATATTGGACATAGTAAAGCTGCCAAGAACTATATCTTGAAATACCAGACTGGATATCTTCAAGGCTATAAAA-TCCA-A-GATGATGATGATGATAATTTGTTTACTGATTCCTACAAAGAACCAATGAAGGCAAAAGAAATTGAAGCTTTTGTGATCAAACAAAACTCCAAGCCCAAGCATTTGGTTTTTGTTGAGTATTTTGTGCCTTTCTTGGCTGCTGCATTCTTCCTGTATTATCGATATCTCAATGGAGCTCTCCAGCTTTGAACTCCCACAACAAAGGGATTATCATATGATTTTCATTGATATTTAGTGTTTTATTTCAACCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345387" ref_strand="+" ref_description="SGN-E345387 [cTOF-13-I6]">
      <seq>tgatgacaaacttcactggaactggtatcggtgttggtgctggcattggttgcggattcggtgtaggatggggtttcggaggcatgcctttgaatttcttgggtcttggtgtaggtggtggctgtgggatcggagtaggcctcggatggggatttggctctgcctttggtagccagtacaggaactctagagttacatttgacggcacagattttatcaataaggagcgtagtgaagaaagagatttaaaagatccagccaaaggcactggaaaagctctttcttctcagtaaatatacacatcttctgttgatgcactcatattctcactttccaaaatttgttaaagttgtacaaccagttccatttcagctatcacttggaaacatatgtagtatcatttgacacttgacagtactctcttctttgatgtctaaaatttgtttacttatgatgcttgggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="106287" stop="102808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105987" g_stop="105952" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105951" i_stop="105841" i_length="111">
            <donor d_prob="0.868" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105840" g_stop="105796" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="81" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105795" i_stop="103579" i_length="2217">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103578" g_stop="103546" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="114" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103545" i_stop="103460" i_length="86">
            <donor d_prob="0.787" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103459" g_stop="103102" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="472" r_length="358" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E345387" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105987" e_stop="105952"/>
          <exon e_start="105840" e_stop="105796"/>
          <exon e_start="103578" e_stop="103546"/>
          <exon e_start="103459" e_stop="103102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGACAAACTTCACTGGAACTGGTATCGGTGTTGGTATGCATAAATGTTCAGTACTTTACTTCTTCTCTTTCAATAAGAACAAGAACTTATTTTTTTTTACTTGCTTTCATGTACTGATGTAAAAGAATTTGAAATTGTGTTTAGGTGCTGGCATTGGTTGCGGATTCGGTGTAGGATGGGGTTTCGGAGGTTTGATTCTTTCATTTTCAAGCTTTTTTGGGTTCTAAAATATCTTTTTAGGTCTGTTTTAATATTTTTTCACTTATAACTAACCAAAAGGTCTAGCTTGGAACAGGAAGATGTGAATTGTATATTAGGAGTTTAGTGGGGTTGAGCAGAGTGATTAGTGATATTACTGTTGTTCTTTGGGAATTCTTGTTCTGAATTTGGTTTAGTAACTATTTATAATTATTAGTGAGACACTGCTAATTTGCTTGTCCTAGTATCTTTTCAGTATTAGTTCAGGAGAAAAGTTTTCATCTTTATTGAGTCTTCGATTACATGCTTATGAATTGGGGTGACATAATTTGCTAGATTCGTCAGCCATGAAATATGGTATTGCAGAAAGCGTAGTACTTTAATACGTATTCTTTTGCACCAGCTTGGTTGATTATGAACTAGATTGAAACGAACTATACATGAAAAGATATGATTAGTTTGTCATGTATCCGAGTGCACAATTGCTCTAGAGTTTACAGTTTTGAAGCATTTGGTAGAATTTCACACATGTAGAGTCCAGATGTCAGAAGACCTTGAAAATATATTCAAGAAAATCTATTGAACACTGTTTCATAATGTAGAACAAAGATTCTTTTAGAATGTGGTCATTGTTGCTGGCATCTCCATTTTATACCAAAGTTTTTCAGCGACAGAACAGCGCAAAAAGAGGTGGCTGCTGTCTTTAACCTCTTTTAAGAGGAGTAAACTAAAAGGAAAGATCAGTACTTTTTGACATTTGATTGGAAAGTGACATGTTAAAGCATCCATCCTCATGGAGAGGATTGTTTTATAATAAAAGCTATTTAAATGTGCATAGAGGAACTTAGAAAATTTATAAATTTGCCTATTGAAGGCAGTGATAGCTTAAGGAATAAGTGGACCTGAGAAGACTTTTGAAGCATGTTTTTGGTAAACTATGCCAACTTAGAAACTGCTACTCTTTCAGTTAAACTGATATTAAAGCAAGGAAAAAGGCATCTAGACAAGCCTCTGCACTAAGCCTCCAAGACATGTGATCTCAAGTGTCCCTTGCAGTAGATGATCCCCACCCTCCCTTGCTTTCTATGGAACTTAAGTGCATGGACAGATGTAGCATCAAAATTATATGGAGTGTGTATCAATTTGTCGGCCAAGATGTTCCTTATCTATTAATTAGCTCCCTGCAAAGTGTAGATTTGGGAGGGAATCCTTTCCAGAGATACCAAAGTGTCGCTGTTGGTCCCGGTCTAGAACGTGGAAGGCTAGTGGTCGCCATGATCTGAATCAGTTTGTAGGGGCGACCTTAGTTTTGCCACGTTGGCTGCGTTCTGGATTAAAACCTAGCTTGGTTGATTTTTGATGAAGTATTCCTACTTGTTGATGACTTCCTATAAATGGGGGAAATCTCTGAATGTTCTATACGTCTCTAGGTATCACTCATCAGTGTTACTAAAAGTCATCGCTTCATTTCTTAGATGGATAAAACGAACTGAAGTAAGGGGTAACCGCTTCATGGGTGAAACCATGCGCTTCATAGAAGCGTGCTTCAAACAATGACACGTAAAATGATCCAAAAGAAAGGGGATGTTCTTTGAAGCTCAACTTTAGGAGTTGGAAATGTTGCCACTACTGTATCTTGGATTCTGAAATTAGTTATCAGTTGCAATTTGATTATTATAGTACTTTTAAATTCAGGTACTTTTGGTCCTTTTTCTAGTTTTCCATAAAATGTTTGCTTTACTTCTCTTTATCCTTCAAGCCCTATAAACCTTGTGAGTTGTTAGCCCCAAAACACTGCTATGCATGTTAGTTCTTCACTGGATTCTTTGTCTGATGAAAATCCTCCTTTAACATCTCTATATTCACATTTCTGAGTTTATTTCCTTGTTCCCTTTGTCTGATTGTTGACATGGACAATGTTAAAAGTATCATATACTACTATATTTTATTAAATTGATTATCGTCATGCTTCTAAAGAAACGAAGGAGATTATCTTATGTTTTGTGTAGGTTAGGAATGTCGTAGTGTTTATCTAAGGGTTGGGACGTATCTCTGTCCAAAGATCCAAGCACACACACACCCGAATCACAATTCTATTCCTCAAGAGAAAAATGTTTGTTTCTTCACATTTGATACAAGTCCTTTTTTTGCAAAATACTCTTCTCTAGTTGTATCATCTAACCTAATGTGTAATCTTGTTTTTTCCAGGCATGCCTTTGAATTTCTTGGGTCTTGGTGTAGGTAAAATCTGAATATAAGCCATGTTTCTTGAAATTGTATCTGTGGTCCAATTTTTTGATGTAATGTTTCACAATTGCTATTTATAGGTGGTGGCTGTGGGATCGGAGTAGGCCTCGGATGGGGATTTGGCTCTGCCTTTGGTAGCCAGTACAGGAACTCTAGAGTTACATTTGACGGCACAGATTTTATCAATAAGGAGCGTAGTGAAGAAAGAGATTTAAAAGATCCAGCCAAAGGCACTGGAAAAGCTCTTTCTTCTCAGTAAATATACACATCTTCTGTTGATGCACTCATATTCTCACTTTCCAAAATTTGTTAAAGTTGTACAACCAGTTCCATTTCAGCTATCACTTGGAAACATATGTAGTATCATTTGACACTTGACAGTACTCTCTTCTTTGATGTCTAAAATTTGTTTACTTATGATGCTTGGGAAAACTCGGT</genome_strand>
        <mrna_strand>TGATGACAAACTTCACTGGAACTGGTATCGGTGTTG...............................................................................................................GTGCTGGCATTGGTTGCGGATTCGGTGTAGGATGGGGTTTCGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCTTTGAATTTCTTGGGTCTTGGTGTAG......................................................................................GTGGTGGCTGTGGGATCGGAGTAGGCCTCGGATGGGGATTTGGCTCTGCCTTTGGTAGCCAGTACAGGAACTCTAGAGTTACATTTGACGGCACAGATTTTATCAATAAGGAGCGTAGTGAAGAAAGAGATTTAAAAGATCCAGCCAAAGGCACTGGAAAAGCTCTTTCTTCTCAGTAAATATACACATCTTCTGTTGATGCACTCATATTCTCACTTTCCAAAATTTGTTAAAGTTGTACAACCAGTTCCATTTCAGCTATCACTTGGAAACATATGTAGTATCATTTGACACTTGACAGTACTCTCTTCTTTGATGTCTAAAATTTGTTTACTTATGATGCTTGGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408839" ref_strand="+" ref_description="SGN-E408839 [PPI-12-I10]">
      <seq>gcaatggtgatgacaaacttcactggaaccggtatcggttttggtatgcataaattttcagtgctggcattggttgcggattcggtgtaggatggggtttcggaggcatgcctttgaatttcttgggtcttggtgtaggtggcggctgtggggttggagtaggcctcggatggggatttggctctgcctttggtagccagtacaggaactctagagttacatttgacggcacagattttatcaataaggagcatagtgaagaaagagattcaaaagatctagccaaaggcactcgaaaagctcattcttctcagtaaatatacacatcttctgttgatgcactgatattctcacttcaaaatttgtcaaagttgtacaactagttccatttcagctatcacttggaaacatatgtagtatcatttgacagcactctcttctttgatgtgtaaaatttgtttccttatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="106294" stop="102867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105994" g_stop="105935" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105934" i_stop="105841" i_length="94">
            <donor d_prob="0.915" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105840" g_stop="105796" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="105" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105795" i_stop="103579" i_length="2217">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103578" g_stop="103546" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="138" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103545" i_stop="103460" i_length="86">
            <donor d_prob="0.787" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103459" g_stop="103117" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="472" r_length="334" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E408839" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105994" e_stop="105935"/>
          <exon e_start="105840" e_stop="105796"/>
          <exon e_start="103578" e_stop="103546"/>
          <exon e_start="103459" e_stop="103117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGGTGATGACAAACTTCACTGGAACTGGTATCGGTGTTGGTATGCATAAATGTTCAGTACTTTACTTCTTCTCTTTCAATAAGAACAAGAACTTATTTTTTTTTACTTGCTTTCATGTACTGATGTAAAAGAATTTGAAATTGTGTTTAGGTGCTGGCATTGGTTGCGGATTCGGTGTAGGATGGGGTTTCGGAGGTTTGATTCTTTCATTTTCAAGCTTTTTTGGGTTCTAAAATATCTTTTTAGGTCTGTTTTAATATTTTTTCACTTATAACTAACCAAAAGGTCTAGCTTGGAACAGGAAGATGTGAATTGTATATTAGGAGTTTAGTGGGGTTGAGCAGAGTGATTAGTGATATTACTGTTGTTCTTTGGGAATTCTTGTTCTGAATTTGGTTTAGTAACTATTTATAATTATTAGTGAGACACTGCTAATTTGCTTGTCCTAGTATCTTTTCAGTATTAGTTCAGGAGAAAAGTTTTCATCTTTATTGAGTCTTCGATTACATGCTTATGAATTGGGGTGACATAATTTGCTAGATTCGTCAGCCATGAAATATGGTATTGCAGAAAGCGTAGTACTTTAATACGTATTCTTTTGCACCAGCTTGGTTGATTATGAACTAGATTGAAACGAACTATACATGAAAAGATATGATTAGTTTGTCATGTATCCGAGTGCACAATTGCTCTAGAGTTTACAGTTTTGAAGCATTTGGTAGAATTTCACACATGTAGAGTCCAGATGTCAGAAGACCTTGAAAATATATTCAAGAAAATCTATTGAACACTGTTTCATAATGTAGAACAAAGATTCTTTTAGAATGTGGTCATTGTTGCTGGCATCTCCATTTTATACCAAAGTTTTTCAGCGACAGAACAGCGCAAAAAGAGGTGGCTGCTGTCTTTAACCTCTTTTAAGAGGAGTAAACTAAAAGGAAAGATCAGTACTTTTTGACATTTGATTGGAAAGTGACATGTTAAAGCATCCATCCTCATGGAGAGGATTGTTTTATAATAAAAGCTATTTAAATGTGCATAGAGGAACTTAGAAAATTTATAAATTTGCCTATTGAAGGCAGTGATAGCTTAAGGAATAAGTGGACCTGAGAAGACTTTTGAAGCATGTTTTTGGTAAACTATGCCAACTTAGAAACTGCTACTCTTTCAGTTAAACTGATATTAAAGCAAGGAAAAAGGCATCTAGACAAGCCTCTGCACTAAGCCTCCAAGACATGTGATCTCAAGTGTCCCTTGCAGTAGATGATCCCCACCCTCCCTTGCTTTCTATGGAACTTAAGTGCATGGACAGATGTAGCATCAAAATTATATGGAGTGTGTATCAATTTGTCGGCCAAGATGTTCCTTATCTATTAATTAGCTCCCTGCAAAGTGTAGATTTGGGAGGGAATCCTTTCCAGAGATACCAAAGTGTCGCTGTTGGTCCCGGTCTAGAACGTGGAAGGCTAGTGGTCGCCATGATCTGAATCAGTTTGTAGGGGCGACCTTAGTTTTGCCACGTTGGCTGCGTTCTGGATTAAAACCTAGCTTGGTTGATTTTTGATGAAGTATTCCTACTTGTTGATGACTTCCTATAAATGGGGGAAATCTCTGAATGTTCTATACGTCTCTAGGTATCACTCATCAGTGTTACTAAAAGTCATCGCTTCATTTCTTAGATGGATAAAACGAACTGAAGTAAGGGGTAACCGCTTCATGGGTGAAACCATGCGCTTCATAGAAGCGTGCTTCAAACAATGACACGTAAAATGATCCAAAAGAAAGGGGATGTTCTTTGAAGCTCAACTTTAGGAGTTGGAAATGTTGCCACTACTGTATCTTGGATTCTGAAATTAGTTATCAGTTGCAATTTGATTATTATAGTACTTTTAAATTCAGGTACTTTTGGTCCTTTTTCTAGTTTTCCATAAAATGTTTGCTTTACTTCTCTTTATCCTTCAAGCCCTATAAACCTTGTGAGTTGTTAGCCCCAAAACACTGCTATGCATGTTAGTTCTTCACTGGATTCTTTGTCTGATGAAAATCCTCCTTTAACATCTCTATATTCACATTTCTGAGTTTATTTCCTTGTTCCCTTTGTCTGATTGTTGACATGGACAATGTTAAAAGTATCATATACTACTATATTTTATTAAATTGATTATCGTCATGCTTCTAAAGAAACGAAGGAGATTATCTTATGTTTTGTGTAGGTTAGGAATGTCGTAGTGTTTATCTAAGGGTTGGGACGTATCTCTGTCCAAAGATCCAAGCACACACACACCCGAATCACAATTCTATTCCTCAAGAGAAAAATGTTTGTTTCTTCACATTTGATACAAGTCCTTTTTTTGCAAAATACTCTTCTCTAGTTGTATCATCTAACCTAATGTGTAATCTTGTTTTTTCCAGGCATGCCTTTGAATTTCTTGGGTCTTGGTGTAGGTAAAATCTGAATATAAGCCATGTTTCTTGAAATTGTATCTGTGGTCCAATTTTTTGATGTAATGTTTCACAATTGCTATTTATAGGTGGTGGCTGTGGGATCGGAGTAGGCCTCGGATGGGGATTTGGCTCTGCCTTTGGTAGCCAGTACAGGAACTCTAGAGTTACATTTGACGGCACAGATTTTATCAATAAGGAGCGTAGTGAAGAAAGAGATTTAAAAGATCCAGCCAAAGGCACTGGAAAAGCTCTTTCTTCTCAGTAAATATACACATCTTCTGTTGATGCACTCATATTCTCACTTTCCAAAATTTGTTAAAGTTGTACAACCAGTTCCATTTCAGCTATCACTTGGAAACATATGTAGTATCATTTGACACTTGACAGTACTCTCTTCTTTGATGTCTAAAATTTGTTTACTTATGATGC</genome_strand>
        <mrna_strand>GCAATGGTGATGACAAACTTCACTGGAACCGGTATCGGTTTTGGTATGCATAAATTTTCA..............................................................................................GTGCTGGCATTGGTTGCGGATTCGGTGTAGGATGGGGTTTCGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCTTTGAATTTCTTGGGTCTTGGTGTAG......................................................................................GTGGCGGCTGTGGGGTTGGAGTAGGCCTCGGATGGGGATTTGGCTCTGCCTTTGGTAGCCAGTACAGGAACTCTAGAGTTACATTTGACGGCACAGATTTTATCAATAAGGAGCATAGTGAAGAAAGAGATTCAAAAGATCTAGCCAAAGGCACTCGAAAAGCTCATTCTTCTCAGTAAATATACACATCTTCTGTTGATGCACTGATATTCTCAC-TT-CAAAATTTGTCAAAGTTGTACAACTAGTTCCATTTCAGCTATCACTTGGAAACATATGTAGTATCATTTGACA---G-C---ACTCTCTTCTTTGATGTGTAAAATTTGTTTCCTTATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608653" ref_strand="+" ref_description="SGN-E608653 [24644]">
      <seq>gtttgccggaagcaatggtgatgacaaacttcactggaaccggtatcggttttggtgctggcattggttgcggattcggtgtaggatggggtttcggaggcatgcctttgaatttcttgggtcttggtgtaggtggcggctgtggggttggagtaggcctcggatggggatttggctctgcctttggtagccagtacaggaactctagagttacatttgacggcacagattttatcaataaggagcatagtgaagaaagagattcaaaagatctagccaaaggcactcgaaaagctcattcttctcagtaaatatacacatcttctgttgatgcactgatattctcacttcaaaatttgtcaaagttgtacaactagttccatttcagctatcacttggaaacatatgtagtatcatttgacagcactctcttctttgatgtgtaaaatttgtttccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="106305" stop="102867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106005" g_stop="105952" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105951" i_stop="105841" i_length="111">
            <donor d_prob="0.868" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105840" g_stop="105796" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="99" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105795" i_stop="103579" i_length="2217">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103578" g_stop="103546" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="132" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103545" i_stop="103460" i_length="86">
            <donor d_prob="0.787" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103459" g_stop="103124" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="459" r_length="327" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="460" polyA_stop="469"/>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-E608653" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106005" e_stop="105952"/>
          <exon e_start="105840" e_stop="105796"/>
          <exon e_start="103578" e_stop="103546"/>
          <exon e_start="103459" e_stop="103124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAAGCAATGGTGATGACAAACTTCACTGGAACTGGTATCGGTGTTGGTATGCATAAATGTTCAGTACTTTACTTCTTCTCTTTCAATAAGAACAAGAACTTATTTTTTTTTACTTGCTTTCATGTACTGATGTAAAAGAATTTGAAATTGTGTTTAGGTGCTGGCATTGGTTGCGGATTCGGTGTAGGATGGGGTTTCGGAGGTTTGATTCTTTCATTTTCAAGCTTTTTTGGGTTCTAAAATATCTTTTTAGGTCTGTTTTAATATTTTTTCACTTATAACTAACCAAAAGGTCTAGCTTGGAACAGGAAGATGTGAATTGTATATTAGGAGTTTAGTGGGGTTGAGCAGAGTGATTAGTGATATTACTGTTGTTCTTTGGGAATTCTTGTTCTGAATTTGGTTTAGTAACTATTTATAATTATTAGTGAGACACTGCTAATTTGCTTGTCCTAGTATCTTTTCAGTATTAGTTCAGGAGAAAAGTTTTCATCTTTATTGAGTCTTCGATTACATGCTTATGAATTGGGGTGACATAATTTGCTAGATTCGTCAGCCATGAAATATGGTATTGCAGAAAGCGTAGTACTTTAATACGTATTCTTTTGCACCAGCTTGGTTGATTATGAACTAGATTGAAACGAACTATACATGAAAAGATATGATTAGTTTGTCATGTATCCGAGTGCACAATTGCTCTAGAGTTTACAGTTTTGAAGCATTTGGTAGAATTTCACACATGTAGAGTCCAGATGTCAGAAGACCTTGAAAATATATTCAAGAAAATCTATTGAACACTGTTTCATAATGTAGAACAAAGATTCTTTTAGAATGTGGTCATTGTTGCTGGCATCTCCATTTTATACCAAAGTTTTTCAGCGACAGAACAGCGCAAAAAGAGGTGGCTGCTGTCTTTAACCTCTTTTAAGAGGAGTAAACTAAAAGGAAAGATCAGTACTTTTTGACATTTGATTGGAAAGTGACATGTTAAAGCATCCATCCTCATGGAGAGGATTGTTTTATAATAAAAGCTATTTAAATGTGCATAGAGGAACTTAGAAAATTTATAAATTTGCCTATTGAAGGCAGTGATAGCTTAAGGAATAAGTGGACCTGAGAAGACTTTTGAAGCATGTTTTTGGTAAACTATGCCAACTTAGAAACTGCTACTCTTTCAGTTAAACTGATATTAAAGCAAGGAAAAAGGCATCTAGACAAGCCTCTGCACTAAGCCTCCAAGACATGTGATCTCAAGTGTCCCTTGCAGTAGATGATCCCCACCCTCCCTTGCTTTCTATGGAACTTAAGTGCATGGACAGATGTAGCATCAAAATTATATGGAGTGTGTATCAATTTGTCGGCCAAGATGTTCCTTATCTATTAATTAGCTCCCTGCAAAGTGTAGATTTGGGAGGGAATCCTTTCCAGAGATACCAAAGTGTCGCTGTTGGTCCCGGTCTAGAACGTGGAAGGCTAGTGGTCGCCATGATCTGAATCAGTTTGTAGGGGCGACCTTAGTTTTGCCACGTTGGCTGCGTTCTGGATTAAAACCTAGCTTGGTTGATTTTTGATGAAGTATTCCTACTTGTTGATGACTTCCTATAAATGGGGGAAATCTCTGAATGTTCTATACGTCTCTAGGTATCACTCATCAGTGTTACTAAAAGTCATCGCTTCATTTCTTAGATGGATAAAACGAACTGAAGTAAGGGGTAACCGCTTCATGGGTGAAACCATGCGCTTCATAGAAGCGTGCTTCAAACAATGACACGTAAAATGATCCAAAAGAAAGGGGATGTTCTTTGAAGCTCAACTTTAGGAGTTGGAAATGTTGCCACTACTGTATCTTGGATTCTGAAATTAGTTATCAGTTGCAATTTGATTATTATAGTACTTTTAAATTCAGGTACTTTTGGTCCTTTTTCTAGTTTTCCATAAAATGTTTGCTTTACTTCTCTTTATCCTTCAAGCCCTATAAACCTTGTGAGTTGTTAGCCCCAAAACACTGCTATGCATGTTAGTTCTTCACTGGATTCTTTGTCTGATGAAAATCCTCCTTTAACATCTCTATATTCACATTTCTGAGTTTATTTCCTTGTTCCCTTTGTCTGATTGTTGACATGGACAATGTTAAAAGTATCATATACTACTATATTTTATTAAATTGATTATCGTCATGCTTCTAAAGAAACGAAGGAGATTATCTTATGTTTTGTGTAGGTTAGGAATGTCGTAGTGTTTATCTAAGGGTTGGGACGTATCTCTGTCCAAAGATCCAAGCACACACACACCCGAATCACAATTCTATTCCTCAAGAGAAAAATGTTTGTTTCTTCACATTTGATACAAGTCCTTTTTTTGCAAAATACTCTTCTCTAGTTGTATCATCTAACCTAATGTGTAATCTTGTTTTTTCCAGGCATGCCTTTGAATTTCTTGGGTCTTGGTGTAGGTAAAATCTGAATATAAGCCATGTTTCTTGAAATTGTATCTGTGGTCCAATTTTTTGATGTAATGTTTCACAATTGCTATTTATAGGTGGTGGCTGTGGGATCGGAGTAGGCCTCGGATGGGGATTTGGCTCTGCCTTTGGTAGCCAGTACAGGAACTCTAGAGTTACATTTGACGGCACAGATTTTATCAATAAGGAGCGTAGTGAAGAAAGAGATTTAAAAGATCCAGCCAAAGGCACTGGAAAAGCTCTTTCTTCTCAGTAAATATACACATCTTCTGTTGATGCACTCATATTCTCACTTTCCAAAATTTGTTAAAGTTGTACAACCAGTTCCATTTCAGCTATCACTTGGAAACATATGTAGTATCATTTGACACTTGACAGTACTCTCTTCTTTGATGTCTAAAATTTGTTTACTT</genome_strand>
        <mrna_strand>GTTTGCCGGAAGCAATGGTGATGACAAACTTCACTGGAACCGGTATCGGTTTTG...............................................................................................................GTGCTGGCATTGGTTGCGGATTCGGTGTAGGATGGGGTTTCGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCTTTGAATTTCTTGGGTCTTGGTGTAG......................................................................................GTGGCGGCTGTGGGGTTGGAGTAGGCCTCGGATGGGGATTTGGCTCTGCCTTTGGTAGCCAGTACAGGAACTCTAGAGTTACATTTGACGGCACAGATTTTATCAATAAGGAGCATAGTGAAGAAAGAGATTCAAAAGATCTAGCCAAAGGCACTCGAAAAGCTCATTCTTCTCAGTAAATATACACATCTTCTGTTGATGCACTGATATTCTCAC-TT-CAAAATTTGTCAAAGTTGTACAACTAGTTCCATTTCAGCTATCACTTGGAAACATATGTAGTATCATTTGACA---G-C---ACTCTCTTCTTTGATGTGTAAAATTTGTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711000" ref_strand="+" ref_description="SGN-E711000 [FA57CF04]">
      <seq>ccccctttaacaagaagatcagcaggcaacgatcgagccatggctctcctcttccacaaatttcaagagggagtgaaaattcttgctaaaagccccacttttgctagagaatcgaggcttcttcagttcgaagctgacataaatctactattcctttacaccagttacaaccgtttaggaaggaatgccgaagaagctgatgcagaggagattattgatatggctaacaaagcctcattagacgatcaacagaagcaagttcatgagaatgtgcattctcaggttacaaacttttgcagctatatggatgacatattactcctggatcaaaaggtcaaagacaatcaggccacatcaccagcaacaccacatttttctcctcgtagtagtggccttggtcttgctgttgatgggaattctctagcacaagaccgcattgccgtacctgaaaccaagacactgcaccgcacagaagtttcacagaggttaaaagatcttatgggctacactctcgaggtcaaaccatctcaaattcctcatgaggatgctgaaaagggtttattcttactaggtgaagccaatattggttctgtcatagcattctatcctggagtagtctaccctccagcatattaccgctatattcctgggtaccctagagttgatgcccaaaatcccacatctgatcacacggcatgatgggactatgatcaatgctcagccctggggtgctggtggtgaatgtcgtgaattatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="105924" stop="109450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106214" g_stop="106282" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106283" i_stop="106482" i_length="200">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106483" g_stop="106577" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="164" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106578" i_stop="107653" i_length="1076">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107654" g_stop="107928" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="439" r_length="275" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107929" i_stop="108833" i_length="905">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108834" g_stop="109150" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="757" r_length="318" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E711000" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106214" e_stop="106282"/>
          <exon e_start="106483" e_stop="106577"/>
          <exon e_start="107654" e_stop="107928"/>
          <exon e_start="108834" e_stop="109150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGCAGTCAAGAAGATCAGCAGGCAACGATCGAGCCATGGCTTTCCTCTTCCACAAATTTCAAGAGGTTCTCTATTTCACCTTGCACCCTTTTAACTGTTAATTTTATGATAACTTGTTCATCAATCAAACTGTACATTTTGTTCTGTTTTTTTTTCTTCATTAAGTATCTTGAAGATATTTGTAATGTGGGTTTTGCATTTGTTTGTTGAATTGACACTGTTAATTATCTAAAGTTGATTTTTTGAATTGACATACGATTTTCAGGGAGTGAAAATTCTTGCTAAAAGCCCCACTTTTGCTAGAGAATCGAGGCTTCTTCAGTTCGAAGCTGACATAAATCTACTATTCCTTTACACCAGGTAAGAGGTGATGTACAAATTGAAATTACTTTTATTGGTTGCTGTTTTATATTGTCATTGTAATTATATTGTTTTATTCAACATTTTCAAAGTATAATGTTGTGTGAGATTCGGGTTTCTTCAGCGCTGATATAGATCTAGGAAGAACTTGTTGTGCTTTTATCAAAGGGGGAATGAAGAACTTGTTTGATATTTGTGAATTTCTGTTTGCTTTTTAAGTTGAATCAATGACAAATCTAGTGTAATCCCACATGTGGGGTCTGGGGAGGGTAGAGTGTTCGCAAAACCTTATCCCTATTTTTGAGAAGATAGAGAGGTTTCAAAATGAGCATCAGCTGAACAGATAGTGAAAAAGAGGCAATAGCAGTAAACAGAAAGAACAATAAGGTAATCACATATCGAGGCAAAATAACACTTAATGATAGAAATCTAAAAATAAGGGAAAGAATTGAACAATACTAACCTTCTACCTTAATCCCCGATCTCCACACCCTCCTATCAAGCTTCATGTACTCAGTGAGCTGAAGTTGCGGCATATCCTTCTGATCGCGTGAAGTTATTTTTCATGATTGAGGATTTGCTTGGGGACTGGGGTAACAGTCCTTATTCCACATTTTTCTTTTAGTTTCTTCTTTAGAGGCCTACAGCTTCAGTGGGAACTGTGCAGTATTGAGAGAGAGAGAGTTTCTTTATTTTCTTGCCCTCGTTGATAAATAGTAGAACAACAACAAGAATACACCATAGGTGGGGTCTGGGGTGGGTGGTGTGTGTGCAGCCTTACCCTTATACCTTGTGAAGGTGAAGGGAATGTTCCCGATAGACCCTCTGTCAAGTAAAACATATCAAAATAGTATGAAAAGAAAGCATAGAAATATGCTTTAGTGAGGAATTGAACCTACAGAGGGACTCGATTTGAAATTCCTTTACCACTGAACCGAGGTGCTCCGTTTGATAAATAGTAAAGTAACTAACATTTTTATGCCTTTAAAATTGCGGCTTCGTTGGTGAAATTACATATATCTTTGCATAGATGCACCACTGTACTTTCATGTTGCCCTGATAAACCTTATTCTCAGTTACAACCGTTTAGGAAGGAATGCCGAAGAAGCTGATGCAGAGGAGATTATTGATATGGCTAACAAAGCCTCATTAGACGATCAACAGAAGCAAGTTCATGAGAATGTGCATTCTCAGGTTACAAACTTTTGCAGCTATATGGATGACATATTACTCCTGGATCAAAAGGTCAAAGACAATCAGGCCACATCACCAGCAACACTACATTTTTCTCCTCGTAGTAGTGGCCTTGGTCTTGCTGTTGATGGGAATTCTCTAGCACAAGACCGCATTGGTAAGAATCTGCTACATCTTAAGCTAAATTTTCCATGTACTTCTTAGTTGTTCCTTTTTTTATTTTTTTGAGGACTTCTTAGTTGTTATATTGTGAAAACTTGTTTTGGATTTTGACTTGCACCCTACTTCAGTGTTGGCAACCATTTGATTTCCTGCTTCTTCTCTGTTGTGACATTGCTTTACCTTGTGTTATGCTGTCCTTGGAATTAATTGGCTGTACCTCTCCAGTATATATCTAGTATTACCGTTAAAGCCACTACTTCATTTTTTATATTAAACACAGTTAGCCTTCAACCAGTGTTGAAAATGTTTTCATTATAAAGTTGGACAATAGAAGTAGTTATATCTACCTCTTGTAGCCGGTAAATACTGTGTCATTTGAAATTTCTGAAGTAGAATATTACTGAATTTATGTAGAAATTGATGAAGTTCCTAGAATCGTTTGATTGGTAAGATGGATTTGCTTTTCTTTACACGAATACAAGGTGGGGATGGGGGGGCCTCATTGCACATCTGCTCATGGATTAAGTAGATCAAATTCAACTCTCAGCTTAAGACACTTTAAAACGATTACTGAGCTCTGGATGTAAACTGCTAAAGGAACGGAGTATAGATATTCCAATTAGAATGTTGCTTCAACTTCTTCATTGGGAGGGGTGAATTGTCACTATTATATTTCCTTCAGTTCATTCAGTATAAACATGATATCTATAATGAAGTTGATGGACAGTTCTAGTTGAGTAAATATTGAATTTGTTGCTGCATACAGAATAACATAACATCACGGATCATGAGGCTCCTTGGTGGTTGGTTTTGTATATATTGTATTTTATTTGTTCTTTGCAGTGGCTTCATAGCTGCATCACCCTGGTTTTTAATTATTGATAAAAAATTTCAGCACAGCCGTACCTGAAACCAAGACACTGCACCGCACAGAAGTTTCACAGAGGTTAAAAGATCTTATGGGCTACACTCTCGAGGTCAAACCATCTCAAATTCCTCATGAGGATGCTGGAAAGGGTTTATTCTTACAAGGTGAAGCCAATATTGGTTCTGTCATAGCATTCTATCCTGGAGTAGTCTACCCTCCAGCATATTACCGCTATATTCCTGGGTACCCTAGAGTTGATGCCCAAAATCC-ACATCTGATCACACGGTATGATGGGACTATGATCAATGCTCAGCCCTGGGGTGCTGGTGGTGAATGTCGTGAATTATGG</genome_strand>
        <mrna_strand>CCCCCTTTAACAAGAAGATCAGCAGGCAACGATCGAGCCATGGCTCTCCTCTTCCACAAATTTCAAGAG........................................................................................................................................................................................................GGAGTGAAAATTCTTGCTAAAAGCCCCACTTTTGCTAGAGAATCGAGGCTTCTTCAGTTCGAAGCTGACATAAATCTACTATTCCTTTACACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAACCGTTTAGGAAGGAATGCCGAAGAAGCTGATGCAGAGGAGATTATTGATATGGCTAACAAAGCCTCATTAGACGATCAACAGAAGCAAGTTCATGAGAATGTGCATTCTCAGGTTACAAACTTTTGCAGCTATATGGATGACATATTACTCCTGGATCAAAAGGTCAAAGACAATCAGGCCACATCACCAGCAACACCACATTTTTCTCCTCGTAGTAGTGGCCTTGGTCTTGCTGTTGATGGGAATTCTCTAGCACAAGACCGCATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTACCTGAAACCAAGACACTGCACCGCACAGAAGTTTCACAGAGGTTAAAAGATCTTATGGGCTACACTCTCGAGGTCAAACCATCTCAAATTCCTCATGAGGATGCTGAAAAGGGTTTATTCTTACTAGGTGAAGCCAATATTGGTTCTGTCATAGCATTCTATCCTGGAGTAGTCTACCCTCCAGCATATTACCGCTATATTCCTGGGTACCCTAGAGTTGATGCCCAAAATCCCACATCTGATCACACGGCATGATGGGACTATGATCAATGCTCAGCCCTGGGGTGCTGGTGGTGAATGTCGTGAATTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339382" ref_strand="+" ref_description="SGN-E339382 [cTOF-4-K7]">
      <seq>agaagatcagcaggcaacgatcgagccatggctttcctcttccacaaatttcaagagggagtgaaaattcttgctaaaagccccacttttgctagagaatcgaggcttcttcagttcgaagctgacataaatctactattcctttacaccagttacaaccgtttaggaaggaatgccgaagaagctgatgcagaggagattattgatatggctaacaaagcctcattagacgatcaacagaagcaagttcatgagaatgtgcattctcaggttacaaacttttgcagctatatggatgacatattactcctggatcaaaaggtcaaagacaatcaggccacatcaccagcaacactacatttttctcctcgtagtagtggccttggtcttgctgttgatgggaattctctagcacaagaccgcattgcacagccgtacctgaaaccaagacactgcaccgcacagaagtttcacagaggttaaaagatcttatgggctacactctcgaggtcaaaccatctcaaattcctcatgaggatgctggaaagggtttattcttacaaggtgaagccaatattggttctgtcatagcattctatcctggagtagtctaccctccagcatattaccgctatattcctgggtaccctagagttgatgcccaaaatccacatctgatcacacggtatgatgggactatgatcaatgctcagccctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="105926" stop="109421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106226" g_stop="106282" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106283" i_stop="106482" i_length="200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106483" g_stop="106577" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="152" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106578" i_stop="107653" i_length="1076">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107654" g_stop="107928" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="427" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107929" i_stop="108828" i_length="900">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108829" g_stop="109121" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="720" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E339382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106226" e_stop="106282"/>
          <exon e_start="106483" e_stop="106577"/>
          <exon e_start="107654" e_stop="107928"/>
          <exon e_start="108829" e_stop="109121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATCAGCAGGCAACGATCGAGCCATGGCTTTCCTCTTCCACAAATTTCAAGAGGTTCTCTATTTCACCTTGCACCCTTTTAACTGTTAATTTTATGATAACTTGTTCATCAATCAAACTGTACATTTTGTTCTGTTTTTTTTTCTTCATTAAGTATCTTGAAGATATTTGTAATGTGGGTTTTGCATTTGTTTGTTGAATTGACACTGTTAATTATCTAAAGTTGATTTTTTGAATTGACATACGATTTTCAGGGAGTGAAAATTCTTGCTAAAAGCCCCACTTTTGCTAGAGAATCGAGGCTTCTTCAGTTCGAAGCTGACATAAATCTACTATTCCTTTACACCAGGTAAGAGGTGATGTACAAATTGAAATTACTTTTATTGGTTGCTGTTTTATATTGTCATTGTAATTATATTGTTTTATTCAACATTTTCAAAGTATAATGTTGTGTGAGATTCGGGTTTCTTCAGCGCTGATATAGATCTAGGAAGAACTTGTTGTGCTTTTATCAAAGGGGGAATGAAGAACTTGTTTGATATTTGTGAATTTCTGTTTGCTTTTTAAGTTGAATCAATGACAAATCTAGTGTAATCCCACATGTGGGGTCTGGGGAGGGTAGAGTGTTCGCAAAACCTTATCCCTATTTTTGAGAAGATAGAGAGGTTTCAAAATGAGCATCAGCTGAACAGATAGTGAAAAAGAGGCAATAGCAGTAAACAGAAAGAACAATAAGGTAATCACATATCGAGGCAAAATAACACTTAATGATAGAAATCTAAAAATAAGGGAAAGAATTGAACAATACTAACCTTCTACCTTAATCCCCGATCTCCACACCCTCCTATCAAGCTTCATGTACTCAGTGAGCTGAAGTTGCGGCATATCCTTCTGATCGCGTGAAGTTATTTTTCATGATTGAGGATTTGCTTGGGGACTGGGGTAACAGTCCTTATTCCACATTTTTCTTTTAGTTTCTTCTTTAGAGGCCTACAGCTTCAGTGGGAACTGTGCAGTATTGAGAGAGAGAGAGTTTCTTTATTTTCTTGCCCTCGTTGATAAATAGTAGAACAACAACAAGAATACACCATAGGTGGGGTCTGGGGTGGGTGGTGTGTGTGCAGCCTTACCCTTATACCTTGTGAAGGTGAAGGGAATGTTCCCGATAGACCCTCTGTCAAGTAAAACATATCAAAATAGTATGAAAAGAAAGCATAGAAATATGCTTTAGTGAGGAATTGAACCTACAGAGGGACTCGATTTGAAATTCCTTTACCACTGAACCGAGGTGCTCCGTTTGATAAATAGTAAAGTAACTAACATTTTTATGCCTTTAAAATTGCGGCTTCGTTGGTGAAATTACATATATCTTTGCATAGATGCACCACTGTACTTTCATGTTGCCCTGATAAACCTTATTCTCAGTTACAACCGTTTAGGAAGGAATGCCGAAGAAGCTGATGCAGAGGAGATTATTGATATGGCTAACAAAGCCTCATTAGACGATCAACAGAAGCAAGTTCATGAGAATGTGCATTCTCAGGTTACAAACTTTTGCAGCTATATGGATGACATATTACTCCTGGATCAAAAGGTCAAAGACAATCAGGCCACATCACCAGCAACACTACATTTTTCTCCTCGTAGTAGTGGCCTTGGTCTTGCTGTTGATGGGAATTCTCTAGCACAAGACCGCATTGGTAAGAATCTGCTACATCTTAAGCTAAATTTTCCATGTACTTCTTAGTTGTTCCTTTTTTTATTTTTTTGAGGACTTCTTAGTTGTTATATTGTGAAAACTTGTTTTGGATTTTGACTTGCACCCTACTTCAGTGTTGGCAACCATTTGATTTCCTGCTTCTTCTCTGTTGTGACATTGCTTTACCTTGTGTTATGCTGTCCTTGGAATTAATTGGCTGTACCTCTCCAGTATATATCTAGTATTACCGTTAAAGCCACTACTTCATTTTTTATATTAAACACAGTTAGCCTTCAACCAGTGTTGAAAATGTTTTCATTATAAAGTTGGACAATAGAAGTAGTTATATCTACCTCTTGTAGCCGGTAAATACTGTGTCATTTGAAATTTCTGAAGTAGAATATTACTGAATTTATGTAGAAATTGATGAAGTTCCTAGAATCGTTTGATTGGTAAGATGGATTTGCTTTTCTTTACACGAATACAAGGTGGGGATGGGGGGGCCTCATTGCACATCTGCTCATGGATTAAGTAGATCAAATTCAACTCTCAGCTTAAGACACTTTAAAACGATTACTGAGCTCTGGATGTAAACTGCTAAAGGAACGGAGTATAGATATTCCAATTAGAATGTTGCTTCAACTTCTTCATTGGGAGGGGTGAATTGTCACTATTATATTTCCTTCAGTTCATTCAGTATAAACATGATATCTATAATGAAGTTGATGGACAGTTCTAGTTGAGTAAATATTGAATTTGTTGCTGCATACAGAATAACATAACATCACGGATCATGAGGCTCCTTGGTGGTTGGTTTTGTATATATTGTATTTTATTTGTTCTTTGCAGTGGCTTCATAGCTGCATCACCCTGGTTTTTAATTATTGATAAAAAATTTCAGCACAGCCGTACCTGAAACCAAGACACTGCACCGCACAGAAGTTTCACAGAGGTTAAAAGATCTTATGGGCTACACTCTCGAGGTCAAACCATCTCAAATTCCTCATGAGGATGCTGGAAAGGGTTTATTCTTACAAGGTGAAGCCAATATTGGTTCTGTCATAGCATTCTATCCTGGAGTAGTCTACCCTCCAGCATATTACCGCTATATTCCTGGGTACCCTAGAGTTGATGCCCAAAATCCACATCTGATCACACGGTATGATGGGACTATGATCAATGCTCAGCCCTGGG</genome_strand>
        <mrna_strand>AGAAGATCAGCAGGCAACGATCGAGCCATGGCTTTCCTCTTCCACAAATTTCAAGAG........................................................................................................................................................................................................GGAGTGAAAATTCTTGCTAAAAGCCCCACTTTTGCTAGAGAATCGAGGCTTCTTCAGTTCGAAGCTGACATAAATCTACTATTCCTTTACACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAACCGTTTAGGAAGGAATGCCGAAGAAGCTGATGCAGAGGAGATTATTGATATGGCTAACAAAGCCTCATTAGACGATCAACAGAAGCAAGTTCATGAGAATGTGCATTCTCAGGTTACAAACTTTTGCAGCTATATGGATGACATATTACTCCTGGATCAAAAGGTCAAAGACAATCAGGCCACATCACCAGCAACACTACATTTTTCTCCTCGTAGTAGTGGCCTTGGTCTTGCTGTTGATGGGAATTCTCTAGCACAAGACCGCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCCGTACCTGAAACCAAGACACTGCACCGCACAGAAGTTTCACAGAGGTTAAAAGATCTTATGGGCTACACTCTCGAGGTCAAACCATCTCAAATTCCTCATGAGGATGCTGGAAAGGGTTTATTCTTACAAGGTGAAGCCAATATTGGTTCTGTCATAGCATTCTATCCTGGAGTAGTCTACCCTCCAGCATATTACCGCTATATTCCTGGGTACCCTAGAGTTGATGCCCAAAATCCACATCTGATCACACGGTATGATGGGACTATGATCAATGCTCAGCCCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269641" ref_strand="+" ref_description="SGN-E269641 [cLEM-2-H14]">
      <seq>aagatcagcaggcaacgatcgagccatggctttcctcttccacaaatttcaagagggagtgaaaattcttgctaaaagccccacttttgctagagaatcgaggcttcttcagttcgaagctgacataaatctactattcctttacaccagttacaaccgtttaggaaggaatgccgaagaagctgatgcagaggagattattgatatggctaacaaagcctcattagacgatcaacagaagcaagttcatgagaatgtgcattctcaggttacaaacttttgcagctatatggatgacatattactcctggatcaaaaggtcaaagacaatcaggccacatcaccagcaacactacatttttctcctcgtagtagtggccttggtcttgctgttgatgggaattctctagcacaagaccgcattgccgtacctgaaaccaagacactgcaccgcacagaagtttcacagaggttaaaagatcttatgggctacactctcgaggtcaaaccatctcaaattcctcatgaggatgctggaaagggtttattcttacaaggtgaagccaatattggttctgtcatagcattctatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="105928" stop="109303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106228" g_stop="106282" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106283" i_stop="106482" i_length="200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106483" g_stop="106577" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="150" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106578" i_stop="107653" i_length="1076">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107654" g_stop="107928" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="425" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107929" i_stop="108833" i_length="905">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108834" g_stop="109003" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="595" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E269641" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106228" e_stop="106282"/>
          <exon e_start="106483" e_stop="106577"/>
          <exon e_start="107654" e_stop="107928"/>
          <exon e_start="108834" e_stop="109003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCAGCAGGCAACGATCGAGCCATGGCTTTCCTCTTCCACAAATTTCAAGAGGTTCTCTATTTCACCTTGCACCCTTTTAACTGTTAATTTTATGATAACTTGTTCATCAATCAAACTGTACATTTTGTTCTGTTTTTTTTTCTTCATTAAGTATCTTGAAGATATTTGTAATGTGGGTTTTGCATTTGTTTGTTGAATTGACACTGTTAATTATCTAAAGTTGATTTTTTGAATTGACATACGATTTTCAGGGAGTGAAAATTCTTGCTAAAAGCCCCACTTTTGCTAGAGAATCGAGGCTTCTTCAGTTCGAAGCTGACATAAATCTACTATTCCTTTACACCAGGTAAGAGGTGATGTACAAATTGAAATTACTTTTATTGGTTGCTGTTTTATATTGTCATTGTAATTATATTGTTTTATTCAACATTTTCAAAGTATAATGTTGTGTGAGATTCGGGTTTCTTCAGCGCTGATATAGATCTAGGAAGAACTTGTTGTGCTTTTATCAAAGGGGGAATGAAGAACTTGTTTGATATTTGTGAATTTCTGTTTGCTTTTTAAGTTGAATCAATGACAAATCTAGTGTAATCCCACATGTGGGGTCTGGGGAGGGTAGAGTGTTCGCAAAACCTTATCCCTATTTTTGAGAAGATAGAGAGGTTTCAAAATGAGCATCAGCTGAACAGATAGTGAAAAAGAGGCAATAGCAGTAAACAGAAAGAACAATAAGGTAATCACATATCGAGGCAAAATAACACTTAATGATAGAAATCTAAAAATAAGGGAAAGAATTGAACAATACTAACCTTCTACCTTAATCCCCGATCTCCACACCCTCCTATCAAGCTTCATGTACTCAGTGAGCTGAAGTTGCGGCATATCCTTCTGATCGCGTGAAGTTATTTTTCATGATTGAGGATTTGCTTGGGGACTGGGGTAACAGTCCTTATTCCACATTTTTCTTTTAGTTTCTTCTTTAGAGGCCTACAGCTTCAGTGGGAACTGTGCAGTATTGAGAGAGAGAGAGTTTCTTTATTTTCTTGCCCTCGTTGATAAATAGTAGAACAACAACAAGAATACACCATAGGTGGGGTCTGGGGTGGGTGGTGTGTGTGCAGCCTTACCCTTATACCTTGTGAAGGTGAAGGGAATGTTCCCGATAGACCCTCTGTCAAGTAAAACATATCAAAATAGTATGAAAAGAAAGCATAGAAATATGCTTTAGTGAGGAATTGAACCTACAGAGGGACTCGATTTGAAATTCCTTTACCACTGAACCGAGGTGCTCCGTTTGATAAATAGTAAAGTAACTAACATTTTTATGCCTTTAAAATTGCGGCTTCGTTGGTGAAATTACATATATCTTTGCATAGATGCACCACTGTACTTTCATGTTGCCCTGATAAACCTTATTCTCAGTTACAACCGTTTAGGAAGGAATGCCGAAGAAGCTGATGCAGAGGAGATTATTGATATGGCTAACAAAGCCTCATTAGACGATCAACAGAAGCAAGTTCATGAGAATGTGCATTCTCAGGTTACAAACTTTTGCAGCTATATGGATGACATATTACTCCTGGATCAAAAGGTCAAAGACAATCAGGCCACATCACCAGCAACACTACATTTTTCTCCTCGTAGTAGTGGCCTTGGTCTTGCTGTTGATGGGAATTCTCTAGCACAAGACCGCATTGGTAAGAATCTGCTACATCTTAAGCTAAATTTTCCATGTACTTCTTAGTTGTTCCTTTTTTTATTTTTTTGAGGACTTCTTAGTTGTTATATTGTGAAAACTTGTTTTGGATTTTGACTTGCACCCTACTTCAGTGTTGGCAACCATTTGATTTCCTGCTTCTTCTCTGTTGTGACATTGCTTTACCTTGTGTTATGCTGTCCTTGGAATTAATTGGCTGTACCTCTCCAGTATATATCTAGTATTACCGTTAAAGCCACTACTTCATTTTTTATATTAAACACAGTTAGCCTTCAACCAGTGTTGAAAATGTTTTCATTATAAAGTTGGACAATAGAAGTAGTTATATCTACCTCTTGTAGCCGGTAAATACTGTGTCATTTGAAATTTCTGAAGTAGAATATTACTGAATTTATGTAGAAATTGATGAAGTTCCTAGAATCGTTTGATTGGTAAGATGGATTTGCTTTTCTTTACACGAATACAAGGTGGGGATGGGGGGGCCTCATTGCACATCTGCTCATGGATTAAGTAGATCAAATTCAACTCTCAGCTTAAGACACTTTAAAACGATTACTGAGCTCTGGATGTAAACTGCTAAAGGAACGGAGTATAGATATTCCAATTAGAATGTTGCTTCAACTTCTTCATTGGGAGGGGTGAATTGTCACTATTATATTTCCTTCAGTTCATTCAGTATAAACATGATATCTATAATGAAGTTGATGGACAGTTCTAGTTGAGTAAATATTGAATTTGTTGCTGCATACAGAATAACATAACATCACGGATCATGAGGCTCCTTGGTGGTTGGTTTTGTATATATTGTATTTTATTTGTTCTTTGCAGTGGCTTCATAGCTGCATCACCCTGGTTTTTAATTATTGATAAAAAATTTCAGCACAGCCGTACCTGAAACCAAGACACTGCACCGCACAGAAGTTTCACAGAGGTTAAAAGATCTTATGGGCTACACTCTCGAGGTCAAACCATCTCAAATTCCTCATGAGGATGCTGGAAAGGGTTTATTCTTACAAGGTGAAGCCAATATTGGTTCTGTCATAGCATTCTATCCT</genome_strand>
        <mrna_strand>AAGATCAGCAGGCAACGATCGAGCCATGGCTTTCCTCTTCCACAAATTTCAAGAG........................................................................................................................................................................................................GGAGTGAAAATTCTTGCTAAAAGCCCCACTTTTGCTAGAGAATCGAGGCTTCTTCAGTTCGAAGCTGACATAAATCTACTATTCCTTTACACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAACCGTTTAGGAAGGAATGCCGAAGAAGCTGATGCAGAGGAGATTATTGATATGGCTAACAAAGCCTCATTAGACGATCAACAGAAGCAAGTTCATGAGAATGTGCATTCTCAGGTTACAAACTTTTGCAGCTATATGGATGACATATTACTCCTGGATCAAAAGGTCAAAGACAATCAGGCCACATCACCAGCAACACTACATTTTTCTCCTCGTAGTAGTGGCCTTGGTCTTGCTGTTGATGGGAATTCTCTAGCACAAGACCGCATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTACCTGAAACCAAGACACTGCACCGCACAGAAGTTTCACAGAGGTTAAAAGATCTTATGGGCTACACTCTCGAGGTCAAACCATCTCAAATTCCTCATGAGGATGCTGGAAAGGGTTTATTCTTACAAGGTGAAGCCAATATTGGTTCTGTCATAGCATTCTATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391684" ref_strand="+" ref_description="SGN-E391684 [TUS-27-D16]">
      <seq>gtttattcttacaaggtgaagccaatattggttctgtcatagcattctatcctggagtagtctaccctccagcatattaccgctatattcctgggtaccctagagttgatgcccaaaatccacatctgatcacacggtatgatgggactatgatcaatgctcagccctggggtgctggtggtgaatgtcgtgaattatgggattggaccagttctcctgaacctaagtgcactatgcaagctggtgaaaaaggttctgacctagatggaacagacgttggaggcaaccttgaagtgtttgagaggagaaaccctctagcctttgctcatttcgccaaccacccagccaaaggcatggtccccaatgtaatggtatacccttatgatttccccctgcttgaggaggacatgagaccctatatacctaatgtttcatttggaaacgatgaagaaacagagactagtaaatttggcagctttaggttcatcaaaatgtggaagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="108651" stop="109753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108951" g_stop="109453" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E391684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108951" e_stop="109453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTCTTACAAGGTGAAGCCAATATTGGTTCTGTCATAGCATTCTATCCTGGAGTAGTCTACCCTCCAGCATATTACCGCTATATTCCTGGGTACCCTAGAGTTGATGCCCAAAATCCACATCTGATCACACGGTATGATGGGACTATGATCAATGCTCAGCCCTGGGGTGCTGGTGGTGAATGTCGTGAATTATGGGATTGGACCAGTTCTCCTGAACCTAAGTGCACTATGCAAGCTGGTGAAAAAGGTTCTGACCTAGATGGAACAGACGTTGGAGGCAACCTTGAAGTGTTTGAGAGGAGAAACCCTCTAGCCTTTGCTCATTTCGCCAACCACCCAGCCAAAGGCATGGTCCCCAATGTAATGGTATACCCTTATGATTTCCCCCTGCTTGAGGAGGACATGAGACCCTATATACCTAATGTTTCATTTGGAAACGATGAAGAAACAGAGACTAGTAAATTTGGCAGCTTTAGGTTCATCAAAATGTGGAAGTCC</genome_strand>
        <mrna_strand>GTTTATTCTTACAAGGTGAAGCCAATATTGGTTCTGTCATAGCATTCTATCCTGGAGTAGTCTACCCTCCAGCATATTACCGCTATATTCCTGGGTACCCTAGAGTTGATGCCCAAAATCCACATCTGATCACACGGTATGATGGGACTATGATCAATGCTCAGCCCTGGGGTGCTGGTGGTGAATGTCGTGAATTATGGGATTGGACCAGTTCTCCTGAACCTAAGTGCACTATGCAAGCTGGTGAAAAAGGTTCTGACCTAGATGGAACAGACGTTGGAGGCAACCTTGAAGTGTTTGAGAGGAGAAACCCTCTAGCCTTTGCTCATTTCGCCAACCACCCAGCCAAAGGCATGGTCCCCAATGTAATGGTATACCCTTATGATTTCCCCCTGCTTGAGGAGGACATGAGACCCTATATACCTAATGTTTCATTTGGAAACGATGAAGAAACAGAGACTAGTAAATTTGGCAGCTTTAGGTTCATCAAAATGTGGAAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269014" ref_strand="+" ref_description="SGN-E269014 [cLEI-16-M24]">
      <seq>tttattcttacaaggtgaagccaatattggttctgtcatagcattctatcctggagtagtctaccctccagcatattaccgctatattcctgggtaccctagagttgatgcccaaaatccacatctgatcacacggtatgatgggactatgatcaatgctcagccctggggtgctggtggtgaatgtcgtgaattatgggattggaccagttctcctgaacctaagtgcactatgcaagctggtgaaaaaggttctgacctagatggaacagacgttggaggcaaccttgaagtgtttgagaggagaaaccctctagcctttgctcatttcgccaaccacccagccaaaggcatggtccccaatgtaatggtatacccttatgatttccccctgcttgaggaggacatgagaccctatatacctaatgtttcatttggaaacgatgaagaaacagagactagtaaatttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="108652" stop="109723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108952" g_stop="109423" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E269014" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108952" e_stop="109423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTTACAAGGTGAAGCCAATATTGGTTCTGTCATAGCATTCTATCCTGGAGTAGTCTACCCTCCAGCATATTACCGCTATATTCCTGGGTACCCTAGAGTTGATGCCCAAAATCCACATCTGATCACACGGTATGATGGGACTATGATCAATGCTCAGCCCTGGGGTGCTGGTGGTGAATGTCGTGAATTATGGGATTGGACCAGTTCTCCTGAACCTAAGTGCACTATGCAAGCTGGTGAAAAAGGTTCTGACCTAGATGGAACAGACGTTGGAGGCAACCTTGAAGTGTTTGAGAGGAGAAACCCTCTAGCCTTTGCTCATTTCGCCAACCACCCAGCCAAAGGCATGGTCCCCAATGTAATGGTATACCCTTATGATTTCCCCCTGCTTGAGGAGGACATGAGACCCTATATACCTAATGTTTCATTTGGAAACGATGAAGAAACAGAGACTAGTAAATTTGGC</genome_strand>
        <mrna_strand>TTTATTCTTACAAGGTGAAGCCAATATTGGTTCTGTCATAGCATTCTATCCTGGAGTAGTCTACCCTCCAGCATATTACCGCTATATTCCTGGGTACCCTAGAGTTGATGCCCAAAATCCACATCTGATCACACGGTATGATGGGACTATGATCAATGCTCAGCCCTGGGGTGCTGGTGGTGAATGTCGTGAATTATGGGATTGGACCAGTTCTCCTGAACCTAAGTGCACTATGCAAGCTGGTGAAAAAGGTTCTGACCTAGATGGAACAGACGTTGGAGGCAACCTTGAAGTGTTTGAGAGGAGAAACCCTCTAGCCTTTGCTCATTTCGCCAACCACCCAGCCAAAGGCATGGTCCCCAATGTAATGGTATACCCTTATGATTTCCCCCTGCTTGAGGAGGACATGAGACCCTATATACCTAATGTTTCATTTGGAAACGATGAAGAAACAGAGACTAGTAAATTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607519" ref_strand="+" ref_description="SGN-E607519 [23486]">
      <seq>ctggagtactctaccctccagcatattaccactacattcctgggtaccctagagttgatccccaaaattcacatctgatcacacggtatgatggaactatgatcaatgcacaaccatggggtgctggtggtgaatctcgtgaattatgggattggaccagttctcctgaacctaagcacactatgcaagctgatgagaaaggttctgacctagatggaacacacgttagaggcaaccttgaaatgttggaaaggagaaaccctctagcctttgctcatttcgccaaccacccagccaaaggcatgacccccaatgtaatgatatacccttatgattttcccctccttgagaaagacatgagaccctatatacctaatgtttcatttggaaacgatgaagaaacagacacgagtaaatttggcagctttaggttcaaaacgtggaagtccaacaacaatgaatcaaaagtccccgttctgaagacacttgttcttgtagctactagagcaatttgtgatgcaagaggttctactgaactacagactgaggcaattcagagcacataccatcgtggtatacctccagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-vjidl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="108702" stop="109888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109002" g_stop="109588" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-E607519" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109002" e_stop="109588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGTAGTCTACCCTCCAGCATATTACCGCTATATTCCTGGGTACCCTAGAGTTGATGCCCAAAATCCACATCTGATCACACGGTATGATGGGACTATGATCAATGCTCAGCCCTGGGGTGCTGGTGGTGAATGTCGTGAATTATGGGATTGGACCAGTTCTCCTGAACCTAAGTGCACTATGCAAGCTGGTGAAAAAGGTTCTGACCTAGATGGAACAGACGTTGGAGGCAACCTTGAAGTGTTTGAGAGGAGAAACCCTCTAGCCTTTGCTCATTTCGCCAACCACCCAGCCAAAGGCATGGTCCCCAATGTAATGGTATACCCTTATGATTTCCCCCTGCTTGAGGAGGACATGAGACCCTATATACCTAATGTTTCATTTGGAAACGATGAAGAAACAGAGACTAGTAAATTTGGCAGCTTTAGGTTCATCAAAATGTGGAAGTCCAACAACAATGAATCAAAAGTCCCCGTTCTGAAGACACTTCTTCTTGTGGCTACTAGGGCAATTTGTGATG-AAGAGGTTATGTTGAACTACAGACTGA-GCAATTCAGAGCACATACCGTCATGGTATA-CTCCAGTA</genome_strand>
        <mrna_strand>CTGGAGTACTCTACCCTCCAGCATATTACCACTACATTCCTGGGTACCCTAGAGTTGATCCCCAAAATTCACATCTGATCACACGGTATGATGGAACTATGATCAATGCACAACCATGGGGTGCTGGTGGTGAATCTCGTGAATTATGGGATTGGACCAGTTCTCCTGAACCTAAGCACACTATGCAAGCTGATGAGAAAGGTTCTGACCTAGATGGAACACACGTTAGAGGCAACCTTGAAATGTTGGAAAGGAGAAACCCTCTAGCCTTTGCTCATTTCGCCAACCACCCAGCCAAAGGCATGACCCCCAATGTAATGATATACCCTTATGATTTTCCCCTCCTTGAGAAAGACATGAGACCCTATATACCTAATGTTTCATTTGGAAACGATGAAGAAACAGACACGAGTAAATTTGGCAGCTTTAGG-T--TCAAAACGTGGAAGTCCAACAACAATGAATCAAAAGTCCCCGTTCTGAAGACACTTGTTCTTGTAGCTACTAGAGCAATTTGTGATGCAAGAGGTTCTACTGAACTACAGACTGAGGCAATTCAGAGCACATACCATCGTGGTATACCTCCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>94</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8251" PGL_stop="6736"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8251" e_stop="8150"/>
            <exon e_start="7993" e_stop="6736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8251" e_stop="8150" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="8149" i_stop="7994" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="7993" e_stop="6736" e_length="1258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8251" stop="8150"/>
              <exon start="7993" stop="7400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8249" stop="8150"/>
              <exon start="7993" stop="7446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7875" stop="7350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7413" stop="6736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7412" stop="6996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTATGCTCGCAAATATTTCCTTCAGGTCCCACTTTCTCTCTCCTCTTTCTTTCTCCTCCGCGTATATTGCTCGCCGGCGTTCGTAACGGTCATATTTCCG : GGTTTTTGAGAGGGTGAATTTTTCGGAGAGATGTGAAGAATTGTGAGAAGTGGCAATGGTGGCTGCAGTATCAACAACAAAGCCCAATCAGAAGGTCACATCTAATGGTTTGAGTTACCAGAATCCGAAAAGACCGCCATTGTTGCCTTCAGAAGCTCAGAATGGACCTTCTAGAAAACCGAAATCTAGAGAGGTTACTTCAAGGTATCTTTCGACTTCTTCTTCATCTTCTGTCTCAACGACGTCGTCTTCGAATACTTCGACTACTTACTCTTCATCGTCTAATACGATTGCCTCACTGAGGACTCCATCGCCGATGGGGACTAGGACGGTTCGACCTGCTGCGACGCCGGTTCAAAATTCCGGTTCAGTTAAACGGTCACAGTCGGTGGACCGGAGACGACCGGTAACGCCAGCGTCTACGGAGAAGTCTGCTGCGGCGAAGCAGCTGTTGAATTCCAGTAGGAGTTTATCCGTTTCCTTTCAAGGTCAGTCTTTCTCTATACCTGTTAGTAAGGCAAAGCCCCCTCCTGCGACGAACAATATTGGAAATGTGAGGAGGGGTACGCCGGAGAGGAGGAAAGTTACTGCGGATTTTGTCACGCCGGAGAGGAGGAAGGTTTCTGCGAATTTTGTCACGCCGGAGAGGAAGAAAGCTACAGCGGATTTTTATACACCGGAGAGGAGTAAAGTTGCGGCGGAATTGAGCACACCAGCGAGAGATCGGACTGAGAATGTCAAGACAAGTGATCAGCATAGGTGGCCAGGGAGGTCAAAGTCACTAAATTCAAGTTTTCTGACACGAAGCATGGATTGTGGTTCTATTGACAAGCCTAAATTTGGATCCGGAAGTGTCACTAGTTCGTCAATGAAGTCGGTGATTGATATATATCATAGAGCTAGAATTGAAGCTAAATTGAAACCTCAAAGTGATAATGATGAGGTCGATATGAAGTCAGCTTATGGATCAGCTATGTCTGCTGATACATTGGCTTCAGATAGTGAAAGTGTCTCTTCAGGGAGTACTTCAGGTGTCCATGATGGTCCGAGTGTTATTCATGGACGAGGAGGTCCCCGTGGTATAGTTGTGCCTGCTAGGTTTTGGCAAGAGACTAACAACAGAATCAGACGAGGGCCAGAACTTGGTTCTTCTATGGACAATGGCAATTTGAAAACAGTGGCTTCTTCTAAGCAAATGGGAAACAAGAAGTTTCTGACTGATAGCCCCAGAACATCAGCCCGGGTTGTCCCAGCTTCT</gDNA_template>
            <first_frame> S  Y  A  R  K  Y  F  L  Q  V  P  L  S  L  S  S  F  F  L  L  R  V  Y  C  S  P  A  F  V  T  V  I  F  P  :  G  F  *  E  G  E  F  F  G  E  M  *  R  I  V  R  S  G  N  G  G  C  S  I  N  N  K  A  Q  S  E  G  H  I  *  W  F  E  L  P  E  S  E  K  T  A  I  V  A  F  R  S  S  E  W  T  F  *  K  T  E  I  *  R  G  Y  F  K  V  S  F  D  F  F  F  I  F  C  L  N  D  V  V  F  E  Y  F  D  Y  L  L  F  I  V  *  Y  D  C  L  T  E  D  S  I  A  D  G  D  *  D  G  S  T  C  C  D  A  G  S  K  F  R  F  S  *  T  V  T  V  G  G  P  E  T  T  G  N  A  S  V  Y  G  E  V  C  C  G  E  A  A  V  E  F  Q  *  E  F  I  R  F  L  S  R  S  V  F  L  Y  T  C  *  *  G  K  A  P  S  C  D  E  Q  Y  W  K  C  E  E  G  Y  A  G  E  E  E  S  Y  C  G  F  C  H  A  G  E  E  E  G  F  C  E  F  C  H  A  G  E  E  E  S  Y  S  G  F  L  Y  T  G  E  E  *  S  C  G  G  I  E  H  T  S  E  R  S  D  *  E  C  Q  D  K  *  S  A  *  V  A  R  E  V  K  V  T  K  F  K  F  S  D  T  K  H  G  L  W  F  Y  *  Q  A  *  I  W  I  R  K  C  H  *  F  V  N  E  V  G  D  *  Y  I  S  *  S  *  N  *  S  *  I  E  T  S  K  *  *  *  *  G  R  Y  E  V  S  L  W  I  S  Y  V  C  *  Y  I  G  F  R  *  *  K  C  L  F  R  E  Y  F  R  C  P  *  W  S  E  C  Y  S  W  T  R  R  S  P  W  Y  S  C  A  C  *  V  L  A  R  D  *  Q  Q  N  Q  T  R  A  R  T  W  F  F  Y  G  Q  W  Q  F  E  N  S  G  F  F  *  A  N  G  K  Q  E  V  S  D  *  *  P  Q  N  I  S  P  G  C  P  S  F  </first_frame>
            <second_frame>  V  M  L  A  N  I  S  F  R  S  H  F  L  S  P  L  S  F  S  S  A  Y  I  A  R  R  R  S  *  R  S  Y  F  R :   V  F  E  R  V  N  F  S  E  R  C  E  E  L  *  E  V  A  M  V  A  A  V  S  T  T  K  P  N  Q  K  V  T  S  N  G  L  S  Y  Q  N  P  K  R  P  P  L  L  P  S  E  A  Q  N  G  P  S  R  K  P  K  S  R  E  V  T  S  R  Y  L  S  T  S  S  S  S  S  V  S  T  T  S  S  S  N  T  S  T  T  Y  S  S  S  S  N  T  I  A  S  L  R  T  P  S  P  M  G  T  R  T  V  R  P  A  A  T  P  V  Q  N  S  G  S  V  K  R  S  Q  S  V  D  R  R  R  P  V  T  P  A  S  T  E  K  S  A  A  A  K  Q  L  L  N  S  S  R  S  L  S  V  S  F  Q  G  Q  S  F  S  I  P  V  S  K  A  K  P  P  P  A  T  N  N  I  G  N  V  R  R  G  T  P  E  R  R  K  V  T  A  D  F  V  T  P  E  R  R  K  V  S  A  N  F  V  T  P  E  R  K  K  A  T  A  D  F  Y  T  P  E  R  S  K  V  A  A  E  L  S  T  P  A  R  D  R  T  E  N  V  K  T  S  D  Q  H  R  W  P  G  R  S  K  S  L  N  S  S  F  L  T  R  S  M  D  C  G  S  I  D  K  P  K  F  G  S  G  S  V  T  S  S  S  M  K  S  V  I  D  I  Y  H  R  A  R  I  E  A  K  L  K  P  Q  S  D  N  D  E  V  D  M  K  S  A  Y  G  S  A  M  S  A  D  T  L  A  S  D  S  E  S  V  S  S  G  S  T  S  G  V  H  D  G  P  S  V  I  H  G  R  G  G  P  R  G  I  V  V  P  A  R  F  W  Q  E  T  N  N  R  I  R  R  G  P  E  L  G  S  S  M  D  N  G  N  L  K  T  V  A  S  S  K  Q  M  G  N  K  K  F  L  T  D  S  P  R  T  S  A  R  V  V  P  A  S </second_frame>
            <third_frame>   L  C  S  Q  I  F  P  S  G  P  T  F  S  L  L  F  L  S  P  P  R  I  L  L  A  G  V  R  N  G  H  I  S   : G  F  L  R  G  *  I  F  R  R  D  V  K  N  C  E  K  W  Q  W  W  L  Q  Y  Q  Q  Q  S  P  I  R  R  S  H  L  M  V  *  V  T  R  I  R  K  D  R  H  C  C  L  Q  K  L  R  M  D  L  L  E  N  R  N  L  E  R  L  L  Q  G  I  F  R  L  L  L  H  L  L  S  Q  R  R  R  L  R  I  L  R  L  L  T  L  H  R  L  I  R  L  P  H  *  G  L  H  R  R  W  G  L  G  R  F  D  L  L  R  R  R  F  K  I  P  V  Q  L  N  G  H  S  R  W  T  G  D  D  R  *  R  Q  R  L  R  R  S  L  L  R  R  S  S  C  *  I  P  V  G  V  Y  P  F  P  F  K  V  S  L  S  L  Y  L  L  V  R  Q  S  P  L  L  R  R  T  I  L  E  M  *  G  G  V  R  R  R  G  G  K  L  L  R  I  L  S  R  R  R  G  G  R  F  L  R  I  L  S  R  R  R  G  R  K  L  Q  R  I  F  I  H  R  R  G  V  K  L  R  R  N  *  A  H  Q  R  E  I  G  L  R  M  S  R  Q  V  I  S  I  G  G  Q  G  G  Q  S  H  *  I  Q  V  F  *  H  E  A  W  I  V  V  L  L  T  S  L  N  L  D  P  E  V  S  L  V  R  Q  *  S  R  *  L  I  Y  I  I  E  L  E  L  K  L  N  *  N  L  K  V  I  M  M  R  S  I  *  S  Q  L  M  D  Q  L  C  L  L  I  H  W  L  Q  I  V  K  V  S  L  Q  G  V  L  Q  V  S  M  M  V  R  V  L  F  M  D  E  E  V  P  V  V  *  L  C  L  L  G  F  G  K  R  L  T  T  E  S  D  E  G  Q  N  L  V  L  L  W  T  M  A  I  *  K  Q  W  L  L  L  S  K  W  E  T  R  S  F  *  L  I  A  P  E  H  Q  P  G  L  S  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7947" stop="6736"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1212</number_coding_nucleotides>
                  <number_encoded_amino_acids>404</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVAMVAAVSTTKPNQKVTSNGLSYQNPKRPPLLPSEAQNGPSRKPKSREVTSRYLSTSSSSSVSTTSSSNTSTTYSSSSNTIASLRTPSPMGTRTVRPAATPVQNSGSVKRSQSVDRRRPVTPASTEKSAAAKQLLNSSRSLSVSFQGQSFSIPVSKAKPPPATNNIGNVRRGTPERRKVTADFVTPERRKVSANFVTPERKKATADFYTPERSKVAAELSTPARDRTENVKTSDQHRWPGRSKSLNSSFLTRSMDCGSIDKPKFGSGSVTSSSMKSVIDIYHRARIEAKLKPQSDNDEVDMKSAYGSAMSADTLASDSESVSSGSTSGVHDGPSVIHGRGGPRGIVVPARFWQETNNRIRRGPELGSSMDNGNLKTVASSKQMGNKKFLTDSPRTSARVVPAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="33676" PGL_stop="43186"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37271" e_stop="37599"/>
            <exon e_start="37686" e_stop="37770"/>
            <exon e_start="37870" e_stop="38636"/>
            <exon e_start="41899" e_stop="42029"/>
            <exon e_start="42141" e_stop="42228"/>
            <exon e_start="42350" e_stop="42485"/>
            <exon e_start="42615" e_stop="42670"/>
            <exon e_start="42755" e_stop="42811"/>
            <exon e_start="42891" e_stop="43031"/>
            <exon e_start="43167" e_stop="43186"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.708" acc_prob="0.934" e_score="0.976"/>
          <exon-intron don_prob="0.926" acc_prob="0.983" e_score="0.988"/>
          <exon-intron don_prob="0.978" acc_prob="0.958" e_score="0.978"/>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="0.969"/>
          <exon-intron don_prob="0.959" acc_prob="0.992" e_score="0.966"/>
          <exon-intron don_prob="0.874" acc_prob="0.908" e_score="0.993"/>
          <exon-intron don_prob="0.386" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.992" e_score="0.986"/>
          <exon-only e_score="0.850"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="37271" e_stop="37599" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.708" acc_prob="0.934">
            <gDNA_intron_boundary i_start="37600" i_stop="37685" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="37686" e_stop="37770" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.983">
            <gDNA_intron_boundary i_start="37771" i_stop="37869" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="37870" e_stop="38636" e_length="767"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.958">
            <gDNA_intron_boundary i_start="38637" i_stop="41898" i_length="3262"/>
          </intron>
          <exon e_serial="4" e_score="0.969">
            <gDNA_exon_boundary e_start="41899" e_stop="42029" e_length="131"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="42030" i_stop="42140" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="0.966">
            <gDNA_exon_boundary e_start="42141" e_stop="42228" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.992">
            <gDNA_intron_boundary i_start="42229" i_stop="42349" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="42350" e_stop="42485" e_length="136"/>
          </exon>
          <intron i_serial="6" don_prob="0.874" acc_prob="0.908">
            <gDNA_intron_boundary i_start="42486" i_stop="42614" i_length="129"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42615" e_stop="42670" e_length="56"/>
          </exon>
          <intron i_serial="7" don_prob="0.386" acc_prob="0.846">
            <gDNA_intron_boundary i_start="42671" i_stop="42754" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42755" e_stop="42811" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.897">
            <gDNA_intron_boundary i_start="42812" i_stop="42890" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="0.986">
            <gDNA_exon_boundary e_start="42891" e_stop="43031" e_length="141"/>
          </exon>
          <intron i_serial="9" don_prob="0.970" acc_prob="0.992">
            <gDNA_intron_boundary i_start="43032" i_stop="43166" i_length="135"/>
          </intron>
          <exon e_serial="10" e_score="0.850">
            <gDNA_exon_boundary e_start="43167" e_stop="43186" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37271" stop="37599"/>
              <exon start="37686" stop="37770"/>
              <exon start="37870" stop="38220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37271" stop="37599"/>
              <exon start="37686" stop="37770"/>
              <exon start="37870" stop="38047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37271" stop="37599"/>
              <exon start="37686" stop="37770"/>
              <exon start="37870" stop="37946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37913" stop="38636"/>
              <exon start="41899" stop="41939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38454" stop="38636"/>
              <exon start="41899" stop="42029"/>
              <exon start="42141" stop="42228"/>
              <exon start="42350" stop="42485"/>
              <exon start="42615" stop="42670"/>
              <exon start="42755" stop="42811"/>
              <exon start="42891" stop="43031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42165" stop="42228"/>
              <exon start="42350" stop="42485"/>
              <exon start="42615" stop="42670"/>
              <exon start="42755" stop="42811"/>
              <exon start="42891" stop="43031"/>
              <exon start="43167" stop="43186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271618" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATCTGCAACTGGGTCGATCAGCCAAGCAGCAATGAATATAGCTAAACAGGGAAAACAAGTTCCTTTTGCGATGCTTTTCCCTCACATACAACCCCAACTTGATAAGGACAGGGCAGCGCAGCTCCAGACACTTTACGTTAAACTCAAAGTAATGTTATAGCTGACTTTTTTGTGCTCATTTTGCCTTCTCTGTTATGTTAGTTTTGTCATCAATTGGAAAATGTATACAGAAAAATGAAATTTCCAAGGAAAGTTTTGTAAGGAACATGAGAAGTATAATTGGTGACCAGATGCTCAAAATGGCTGTATATAAATTTCAATCTCAG : GCATCGAAAAACTCACAGTCCGTTCCCGGTCAATTTCCTCAGTCTCAGGCTTCACAGCAGCAACATTCGCTTATGCCAGCCGATG : ATTCTAGCAATATGGCAATTGAGAGTAAAGCTCAAAAGTTGCACGAGGTGGAAAACCAAGCCGATCTGCGTGGAGCCCAAGGAAGCCAGATGTCTTCTTCTAGTTTGACTGCTGTAAAACAAGAAAGGGATCACACACCATTTCCAATTCAGGGACTTAACAGACAACAGCAACAACATTTACACTTCTCACAGGCATCTTTTCCCACATTTGCAAATGCAGGGAACAATTACAGTGCATATTCTGCATCTAATGTCAACTCTTCAACAACACAACCTCTTAAACAGCAATCTGATGATGCACAAATGAGACAAATTTCAGTTCAACAGAACAGAAATGCAACTCAGTTTGGAGTGCCAGCACAAGCCATGGGAATAATGAGTGCCCCTAAGTTTGAAAAGCAAAACACTTTTGGCGAAGCCAAAAGATTACCTGGTGGGGGTCTTAATATGTCAAGTACTTCAAGAATCCAGCAGACCTCAGTGCAGTGGCAACCCTCTGCCAATAAAGAGCAGAAAAGCATTCTTTCATCACCAATGACCAATCCAAAGCCTGAACCAATTGATCATTTCCATGACCAGCTACAAAGATCCCAGTTATCGCCCTTCTCCTCTGTTCAAGTGGATCAAGGAAATTCCACTTCGGAAAGTTCAAGGGATGAATCTATTGAACAGACCTCCAGAATTGGTTTATCATCAACGACTAGCATGAAACCTTCAAATTCAGCCTCGTCTTCCATGTCATCTCATATGGACACTAGCACATTG : TTAACTTCTCGGACACTTTCTGTGACATCTCCGCTTGGGCTAGGAAACAACGGAAAGACTCCTGTGAAAAAGCCTTCCATTGGACAGAAGAAGCCCCTTGATGCGCTAGGTTCCTCACCTCCACCTTCGGG : AAAGAAGCAAAAGGTGTCGGGAGGTTTCCTAGATCAGAGCATTGAACAACTTAATGATGTTACTGCTGTTAGTGGGGTTAATCTAAGG : GAAGAGGAAGAGCAACTATTTTCTGGGCCCAAGGAGGACAGTCGAGTTTCTGAAGCATCTCGTCGAGTTGTGCAAGAAGAAGAGGAAAGGTTGATTTTGCAGAAAATTCCACTTCAGAAGAAATTGACAGAAATCA : TGGCAAAATGTGGTTTAAAGAGTATGAGCAGTGATGTCGAACGGTGCTTGTCGTTG : TGTGTGGAGGAAAGAATGCGTGGACTCATAAGTAGTCTCATCAGACTGTCAAAACAG : AGAGTTGACATTGAGAAGTCAAGACACAGAACAATTGTCACCTCAGATGTTCGTGAAGAAATCATGTCAATCAATCGAAAAGCCCGGGAAGAATGGGAAAGGAAACAAGCTGATGTGGAGAAACTCCAAAAGGCAAATGAA : CCTGAAGGTAGTACTGGAGT</gDNA_template>
            <first_frame> R  I  C  N  W  V  D  Q  P  S  S  N  E  Y  S  *  T  G  K  T  S  S  F  C  D  A  F  P  S  H  T  T  P  T  *  *  G  Q  G  S  A  A  P  D  T  L  R  *  T  Q  S  N  V  I  A  D  F  F  V  L  I  L  P  S  L  L  C  *  F  C  H  Q  L  E  N  V  Y  R  K  M  K  F  P  R  K  V  L  *  G  T  *  E  V  *  L  V  T  R  C  S  K  W  L  Y  I  N  F  N  L  R :   H  R  K  T  H  S  P  F  P  V  N  F  L  S  L  R  L  H  S  S  N  I  R  L  C  Q  P  M  :  I  L  A  I  W  Q  L  R  V  K  L  K  S  C  T  R  W  K  T  K  P  I  C  V  E  P  K  E  A  R  C  L  L  L  V  *  L  L  *  N  K  K  G  I  T  H  H  F  Q  F  R  D  L  T  D  N  S  N  N  I  Y  T  S  H  R  H  L  F  P  H  L  Q  M  Q  G  T  I  T  V  H  I  L  H  L  M  S  T  L  Q  Q  H  N  L  L  N  S  N  L  M  M  H  K  *  D  K  F  Q  F  N  R  T  E  M  Q  L  S  L  E  C  Q  H  K  P  W  E  *  *  V  P  L  S  L  K  S  K  T  L  L  A  K  P  K  D  Y  L  V  G  V  L  I  C  Q  V  L  Q  E  S  S  R  P  Q  C  S  G  N  P  L  P  I  K  S  R  K  A  F  F  H  H  Q  *  P  I  Q  S  L  N  Q  L  I  I  S  M  T  S  Y  K  D  P  S  Y  R  P  S  P  L  F  K  W  I  K  E  I  P  L  R  K  V  Q  G  M  N  L  L  N  R  P  P  E  L  V  Y  H  Q  R  L  A  *  N  L  Q  I  Q  P  R  L  P  C  H  L  I  W  T  L  A  H  C :   *  L  L  G  H  F  L  *  H  L  R  L  G  *  E  T  T  E  R  L  L  *  K  S  L  P  L  D  R  R  S  P  L  M  R  *  V  P  H  L  H  L  R   : E  R  S  K  R  C  R  E  V  S  *  I  R  A  L  N  N  L  M  M  L  L  L  L  V  G  L  I  *  G :   K  R  K  S  N  Y  F  L  G  P  R  R  T  V  E  F  L  K  H  L  V  E  L  C  K  K  K  R  K  G  *  F  C  R  K  F  H  F  R  R  N  *  Q  K  S  :  W  Q  N  V  V  *  R  V  *  A  V  M  S  N  G  A  C  R  C :   V  W  R  K  E  C  V  D  S  *  V  V  S  S  D  C  Q  N  R :   E  L  T  L  R  S  Q  D  T  E  Q  L  S  P  Q  M  F  V  K  K  S  C  Q  S  I  E  K  P  G  K  N  G  K  G  N  K  L  M  W  R  N  S  K  R  Q  M  N :   L  K  V  V  L  E  </first_frame>
            <second_frame>  E  S  A  T  G  S  I  S  Q  A  A  M  N  I  A  K  Q  G  K  Q  V  P  F  A  M  L  F  P  H  I  Q  P  Q  L  D  K  D  R  A  A  Q  L  Q  T  L  Y  V  K  L  K  V  M  L  *  L  T  F  L  C  S  F  C  L  L  C  Y  V  S  F  V  I  N  W  K  M  Y  T  E  K  *  N  F  Q  G  K  F  C  K  E  H  E  K  Y  N  W  *  P  D  A  Q  N  G  C  I  *  I  S  I  S   : G  I  E  K  L  T  V  R  S  R  S  I  S  S  V  S  G  F  T  A  A  T  F  A  Y  A  S  R  * :   F  *  Q  Y  G  N  *  E  *  S  S  K  V  A  R  G  G  K  P  S  R  S  A  W  S  P  R  K  P  D  V  F  F  *  F  D  C  C  K  T  R  K  G  S  H  T  I  S  N  S  G  T  *  Q  T  T  A  T  T  F  T  L  L  T  G  I  F  S  H  I  C  K  C  R  E  Q  L  Q  C  I  F  C  I  *  C  Q  L  F  N  N  T  T  S  *  T  A  I  *  *  C  T  N  E  T  N  F  S  S  T  E  Q  K  C  N  S  V  W  S  A  S  T  S  H  G  N  N  E  C  P  *  V  *  K  A  K  H  F  W  R  S  Q  K  I  T  W  W  G  S  *  Y  V  K  Y  F  K  N  P  A  D  L  S  A  V  A  T  L  C  Q  *  R  A  E  K  H  S  F  I  T  N  D  Q  S  K  A  *  T  N  *  S  F  P  *  P  A  T  K  I  P  V  I  A  L  L  L  C  S  S  G  S  R  K  F  H  F  G  K  F  K  G  *  I  Y  *  T  D  L  Q  N  W  F  I  I  N  D  *  H  E  T  F  K  F  S  L  V  F  H  V  I  S  Y  G  H  *  H  I   : V  N  F  S  D  T  F  C  D  I  S  A  W  A  R  K  Q  R  K  D  S  C  E  K  A  F  H  W  T  E  E  A  P  *  C  A  R  F  L  T  S  T  F  G  :  K  E  A  K  G  V  G  R  F  P  R  S  E  H  *  T  T  *  *  C  Y  C  C  *  W  G  *  S  K   : G  R  G  R  A  T  I  F  W  A  Q  G  G  Q  S  S  F  *  S  I  S  S  S  C  A  R  R  R  G  K  V  D  F  A  E  N  S  T  S  E  E  I  D  R  N  H :   G  K  M  W  F  K  E  Y  E  Q  *  C  R  T  V  L  V  V   : V  C  G  G  K  N  A  W  T  H  K  *  S  H  Q  T  V  K  T   : E  S  *  H  *  E  V  K  T  Q  N  N  C  H  L  R  C  S  *  R  N  H  V  N  Q  S  K  S  P  G  R  M  G  K  E  T  S  *  C  G  E  T  P  K  G  K  *   : T  *  R  *  Y  W  S </second_frame>
            <third_frame>   N  L  Q  L  G  R  S  A  K  Q  Q  *  I  *  L  N  R  E  N  K  F  L  L  R  C  F  S  L  T  Y  N  P  N  L  I  R  T  G  Q  R  S  S  R  H  F  T  L  N  S  K  *  C  Y  S  *  L  F  C  A  H  F  A  F  S  V  M  L  V  L  S  S  I  G  K  C  I  Q  K  N  E  I  S  K  E  S  F  V  R  N  M  R  S  I  I  G  D  Q  M  L  K  M  A  V  Y  K  F  Q  S  Q  :  A  S  K  N  S  Q  S  V  P  G  Q  F  P  Q  S  Q  A  S  Q  Q  Q  H  S  L  M  P  A  D   : D  S  S  N  M  A  I  E  S  K  A  Q  K  L  H  E  V  E  N  Q  A  D  L  R  G  A  Q  G  S  Q  M  S  S  S  S  L  T  A  V  K  Q  E  R  D  H  T  P  F  P  I  Q  G  L  N  R  Q  Q  Q  Q  H  L  H  F  S  Q  A  S  F  P  T  F  A  N  A  G  N  N  Y  S  A  Y  S  A  S  N  V  N  S  S  T  T  Q  P  L  K  Q  Q  S  D  D  A  Q  M  R  Q  I  S  V  Q  Q  N  R  N  A  T  Q  F  G  V  P  A  Q  A  M  G  I  M  S  A  P  K  F  E  K  Q  N  T  F  G  E  A  K  R  L  P  G  G  G  L  N  M  S  S  T  S  R  I  Q  Q  T  S  V  Q  W  Q  P  S  A  N  K  E  Q  K  S  I  L  S  S  P  M  T  N  P  K  P  E  P  I  D  H  F  H  D  Q  L  Q  R  S  Q  L  S  P  F  S  S  V  Q  V  D  Q  G  N  S  T  S  E  S  S  R  D  E  S  I  E  Q  T  S  R  I  G  L  S  S  T  T  S  M  K  P  S  N  S  A  S  S  S  M  S  S  H  M  D  T  S  T  L  :  L  T  S  R  T  L  S  V  T  S  P  L  G  L  G  N  N  G  K  T  P  V  K  K  P  S  I  G  Q  K  K  P  L  D  A  L  G  S  S  P  P  P  S  G :   K  K  Q  K  V  S  G  G  F  L  D  Q  S  I  E  Q  L  N  D  V  T  A  V  S  G  V  N  L  R  :  E  E  E  E  Q  L  F  S  G  P  K  E  D  S  R  V  S  E  A  S  R  R  V  V  Q  E  E  E  E  R  L  I  L  Q  K  I  P  L  Q  K  K  L  T  E  I   : M  A  K  C  G  L  K  S  M  S  S  D  V  E  R  C  L  S  L  :  C  V  E  E  R  M  R  G  L  I  S  S  L  I  R  L  S  K  Q  :  R  V  D  I  E  K  S  R  H  R  T  I  V  T  S  D  V  R  E  E  I  M  S  I  N  R  K  A  R  E  E  W  E  R  K  Q  A  D  V  E  K  L  Q  K  A  N  E  :  P  E  G  S  T  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37438" stop="37599"/>
                    <exon start="37686" stop="37770"/>
                    <exon start="37870" stop="38636"/>
                    <exon start="41899" stop="42029"/>
                    <exon start="42141" stop="42228"/>
                    <exon start="42350" stop="42485"/>
                    <exon start="42615" stop="42670"/>
                    <exon start="42755" stop="42811"/>
                    <exon start="42891" stop="43031"/>
                    <exon start="43167" stop="43184"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1641</number_coding_nucleotides>
                  <number_encoded_amino_acids>547</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFCAHFAFSVMLVLSSIGKCIQKNEISKESFVRNMRSIIGDQMLKMAVYKFQSQASKNSQSVPGQFPQSQASQQQHSLMPADDSSNMAIESKAQKLHEVENQADLRGAQGSQMSSSSLTAVKQERDHTPFPIQGLNRQQQQHLHFSQASFPTFANAGNNYSAYSASNVNSSTTQPLKQQSDDAQMRQISVQQNRNATQFGVPAQAMGIMSAPKFEKQNTFGEAKRLPGGGLNMSSTSRIQQTSVQWQPSANKEQKSILSSPMTNPKPEPIDHFHDQLQRSQLSPFSSVQVDQGNSTSESSRDESIEQTSRIGLSSTTSMKPSNSASSSMSSHMDTSTLLTSRTLSVTSPLGLGNNGKTPVKKPSIGQKKPLDALGSSPPPSGKKQKVSGGFLDQSIEQLNDVTAVSGVNLREEEEQLFSGPKEDSRVSEASRRVVQEEEERLILQKIPLQKKLTEIMAKCGLKSMSSDVERCLSLCVEERMRGLISSLIRLSKQRVDIEKSRHRTIVTSDVREEIMSINRKAREEWERKQADVEKLQKANEPEGSTG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33676" e_stop="33966"/>
            <exon e_start="34095" e_stop="34200"/>
            <exon e_start="36832" e_stop="37421"/>
            <exon e_start="37504" e_stop="37516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.962"/>
          <exon-intron don_prob="0.995" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.711" e_score="0.925"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="33676" e_stop="33966" e_length="291"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33967" i_stop="34094" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34095" e_stop="34200" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.768">
            <gDNA_intron_boundary i_start="34201" i_stop="36831" i_length="2631"/>
          </intron>
          <exon e_serial="3" e_score="0.925">
            <gDNA_exon_boundary e_start="36832" e_stop="37421" e_length="590"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.711">
            <gDNA_intron_boundary i_start="37422" i_stop="37503" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37504" e_stop="37516" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33676" stop="33966"/>
              <exon start="34095" stop="34200"/>
              <exon start="36832" stop="37267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36903" stop="37421"/>
              <exon start="37504" stop="37516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGCGTATTCATTAGAAATTTATGCTATAAACAATAAAACAAAGAGAATCATCAAATTTTTTCACTGTATAATTTTCCAGAGACTGGAAATTTTGCTACTCTTCTTCCTTAATCGTTCGAAAAATTAATTCGTACATTCATGGAAACCTAGAAATACATCAACTAACGGATCTCCCATTTTTTCCTTTTTGAAACGAATTAATTGCTGCAATATACGGTTATATATAACCATTTTTCAAATTTCTGAATCAATGGATCCGTCTATCATGAAGCTCCTTGAAGAAGACGAG : GATGAAACAATGCATTCGGGGGCGGATGTGGAGGCATTCACTGCTGCCCTAAACAGGGATATCGGTGGAGATAATTCACAATCTCAGCCTTCGGATTCCGATAGCG : TGCCATTGTCTCAAGGAAGCAGTTATACCTCAAATCAGTTTGCCCCATGGCAAACTGCTAACCATGACGAAAATGCCAGTCGTTGTAACCTTCAAGATTCAGAGACCATCCAGCCAAAGGAGGAAAATGTGTCTGATATGCAGTTGAAGAGACTTGATACAGATTCTCAGAATCAGCAGCAAAAAAATGATTCATCACAGGAGATCAATTCCCTTCCCGTGCAGCATATATCCCAGGACAGTTATCAAACCACAGAGGTTGAACAGGACACACTTCATTCTTCTAGAGCAGTGAATATGCCGAATCCTGAAAAGAATACGCAAAATCCAGAATCTCCACATCTGAATTTACAGGGAACAAATAATTTACAGCCCATGCAGAGTTTGACAACAGGAACTAGTAGTCTGCCACGTGTGGCAACAGTGGCAAGTAATCAGTCAGAATCTGCAACTGGGTCGATCAGCCAAGCAGCAATGAATATAGCTAAACAGGGAAAACAAGTTCCTTTTGCGATGCTTTTCCCTCACATACAACCCCAACTTGATAAGGACAGGGCAGCGCAGCTCCAGACACTTTACGTTAAACTCAAA : AAAAATGAAATTT</gDNA_template>
            <first_frame> F  A  Y  S  L  E  I  Y  A  I  N  N  K  T  K  R  I  I  K  F  F  H  C  I  I  F  Q  R  L  E  I  L  L  L  F  F  L  N  R  S  K  N  *  F  V  H  S  W  K  P  R  N  T  S  T  N  G  S  P  I  F  S  F  L  K  R  I  N  C  C  N  I  R  L  Y  I  T  I  F  Q  I  S  E  S  M  D  P  S  I  M  K  L  L  E  E  D  E  :  D  E  T  M  H  S  G  A  D  V  E  A  F  T  A  A  L  N  R  D  I  G  G  D  N  S  Q  S  Q  P  S  D  S  D  S   : V  P  L  S  Q  G  S  S  Y  T  S  N  Q  F  A  P  W  Q  T  A  N  H  D  E  N  A  S  R  C  N  L  Q  D  S  E  T  I  Q  P  K  E  E  N  V  S  D  M  Q  L  K  R  L  D  T  D  S  Q  N  Q  Q  Q  K  N  D  S  S  Q  E  I  N  S  L  P  V  Q  H  I  S  Q  D  S  Y  Q  T  T  E  V  E  Q  D  T  L  H  S  S  R  A  V  N  M  P  N  P  E  K  N  T  Q  N  P  E  S  P  H  L  N  L  Q  G  T  N  N  L  Q  P  M  Q  S  L  T  T  G  T  S  S  L  P  R  V  A  T  V  A  S  N  Q  S  E  S  A  T  G  S  I  S  Q  A  A  M  N  I  A  K  Q  G  K  Q  V  P  F  A  M  L  F  P  H  I  Q  P  Q  L  D  K  D  R  A  A  Q  L  Q  T  L  Y  V  K  L  K  :  K  N  E  I  </first_frame>
            <second_frame>  S  R  I  H  *  K  F  M  L  *  T  I  K  Q  R  E  S  S  N  F  F  T  V  *  F  S  R  D  W  K  F  C  Y  S  S  S  L  I  V  R  K  I  N  S  Y  I  H  G  N  L  E  I  H  Q  L  T  D  L  P  F  F  P  F  *  N  E  L  I  A  A  I  Y  G  Y  I  *  P  F  F  K  F  L  N  Q  W  I  R  L  S  *  S  S  L  K  K  T  R :   M  K  Q  C  I  R  G  R  M  W  R  H  S  L  L  P  *  T  G  I  S  V  E  I  I  H  N  L  S  L  R  I  P  I  A  :  C  H  C  L  K  E  A  V  I  P  Q  I  S  L  P  H  G  K  L  L  T  M  T  K  M  P  V  V  V  T  F  K  I  Q  R  P  S  S  Q  R  R  K  M  C  L  I  C  S  *  R  D  L  I  Q  I  L  R  I  S  S  K  K  M  I  H  H  R  R  S  I  P  F  P  C  S  I  Y  P  R  T  V  I  K  P  Q  R  L  N  R  T  H  F  I  L  L  E  Q  *  I  C  R  I  L  K  R  I  R  K  I  Q  N  L  H  I  *  I  Y  R  E  Q  I  I  Y  S  P  C  R  V  *  Q  Q  E  L  V  V  C  H  V  W  Q  Q  W  Q  V  I  S  Q  N  L  Q  L  G  R  S  A  K  Q  Q  *  I  *  L  N  R  E  N  K  F  L  L  R  C  F  S  L  T  Y  N  P  N  L  I  R  T  G  Q  R  S  S  R  H  F  T  L  N  S  K :   K  M  K  F </second_frame>
            <third_frame>   R  V  F  I  R  N  L  C  Y  K  Q  *  N  K  E  N  H  Q  I  F  S  L  Y  N  F  P  E  T  G  N  F  A  T  L  L  P  *  S  F  E  K  L  I  R  T  F  M  E  T  *  K  Y  I  N  *  R  I  S  H  F  F  L  F  E  T  N  *  L  L  Q  Y  T  V  I  Y  N  H  F  S  N  F  *  I  N  G  S  V  Y  H  E  A  P  *  R  R  R   : G  *  N  N  A  F  G  G  G  C  G  G  I  H  C  C  P  K  Q  G  Y  R  W  R  *  F  T  I  S  A  F  G  F  R  *  R :   A  I  V  S  R  K  Q  L  Y  L  K  S  V  C  P  M  A  N  C  *  P  *  R  K  C  Q  S  L  *  P  S  R  F  R  D  H  P  A  K  G  G  K  C  V  *  Y  A  V  E  E  T  *  Y  R  F  S  E  S  A  A  K  K  *  F  I  T  G  D  Q  F  P  S  R  A  A  Y  I  P  G  Q  L  S  N  H  R  G  *  T  G  H  T  S  F  F  *  S  S  E  Y  A  E  S  *  K  E  Y  A  K  S  R  I  S  T  S  E  F  T  G  N  K  *  F  T  A  H  A  E  F  D  N  R  N  *  *  S  A  T  C  G  N  S  G  K  *  S  V  R  I  C  N  W  V  D  Q  P  S  S  N  E  Y  S  *  T  G  K  T  S  S  F  C  D  A  F  P  S  H  T  T  P  T  *  *  G  Q  G  S  A  A  P  D  T  L  R  *  T  Q   : K  K  *  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33805" stop="33966"/>
                    <exon start="34095" stop="34200"/>
                    <exon start="36832" stop="37421"/>
                    <exon start="37504" stop="37515"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVHSWKPRNTSTNGSPIFSFLKRINCCNIRLYITIFQISESMDPSIMKLLEEDEDETMHSGADVEAFTAALNRDIGGDNSQSQPSDSDSVPLSQGSSYTSNQFAPWQTANHDENASRCNLQDSETIQPKEENVSDMQLKRLDTDSQNQQQKNDSSQEINSLPVQHISQDSYQTTEVEQDTLHSSRAVNMPNPEKNTQNPESPHLNLQGTNNLQPMQSLTTGTSSLPRVATVASNQSESATGSISQAAMNIAKQGKQVPFAMLFPHIQPQLDKDRAAQLQTLYVKLKKNEI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="54478" PGL_stop="47540"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54478" e_stop="54447"/>
            <exon e_start="54128" e_stop="53950"/>
            <exon e_start="53864" e_stop="53824"/>
            <exon e_start="51339" e_stop="50991"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.969"/>
          <exon-intron don_prob="0.958" acc_prob="0.986" e_score="0.849"/>
          <exon-intron don_prob="0.992" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="54478" e_stop="54447" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54446" i_stop="54129" i_length="318"/>
          </intron>
          <exon e_serial="2" e_score="0.849">
            <gDNA_exon_boundary e_start="54128" e_stop="53950" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.986">
            <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53864" e_stop="53824" e_length="41"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.989">
            <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51339" e_stop="50991" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54478" stop="54447"/>
              <exon start="54128" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54089" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54080" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54079" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54078" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54073" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54072" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="50997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54071" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54071" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608037" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54071" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54070" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54069" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="50991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54069" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54066" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="50997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54063" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622123" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54062" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54061" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54059" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54059" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54058" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="50997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54039" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="50997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54036" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54035" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586361" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54014" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53970" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53963" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51261" stop="51038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216259" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCACCCAACTACCCTAATTTCTCACTTTTT : GAATGTATATATATATATGTAAAGGGTTTCTCTCAAAGCCACTTCCTTAAAAAACCCAATTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG : GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG : TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTTGTCGAGCGTAATGCTTTACCTTCTCAATGCCT</gDNA_template>
            <first_frame> H  H  P  T  T  L  I  S  H  F  L :   N  V  Y  I  Y  M  *  R  V  S  L  K  A  T  S  L  K  N  P  I  F  S  S  N  L  Y  R  K  Y  R  R  T  N  *  A  M  G  G  G  N  G  Q  K  A  K  M  A  R  E  K  N  M  E  K  M  K  G  Q  K   : G  S  Q  L  E  A  N  K  K  A  M  N  I  Q  :  C  K  V  C  M  Q  T  F  I  C  T  T  S  E  V  K  C  R  E  H  A  E  A  K  H  P  K  S  D  V  Y  A  C  F  P  H  L  K  K  *  F  T  F  Q  S  L  G  *  W  L  F  P  N  Y  V  S  K  F  C  *  P  *  *  S  L  N  L  F  K  S  C  C  S  V  L  L  Q  T  V  D  G  T  *  F  G  T  V  *  N  I  C  L  *  *  L  P  P  F  G  L  I  Y  A  I  D  L  S  S  V  M  L  Y  L  L  N  A  </first_frame>
            <second_frame>  T  T  Q  L  P  *  F  L  T  F   : *  M  Y  I  Y  I  C  K  G  F  L  S  K  P  L  P  *  K  T  Q  F  F  P  P  I  C  T  G  N  I  E  E  Q  T  K  P  W  V  E  A  M  D  R  R  Q  R  W  L  V  R  R  I  W  K  R  *  K  A  K  R  :  E  A  S  L  R  L  T  R  R  L  *  I  S  S :   A  R  C  A  C  R  H  S  F  A  P  L  L  K  S  S  A  E  N  M  L  R  R  S  I  P  N  L  M  S  M  H  V  S  L  I  S  R  N  D  S  H  F  R  V  W  A  D  G  C  F  P  T  M  F  L  N  S  V  N  H  D  K  V  *  I  C  S  K  V  V  A  P  F  C  F  K  L  L  M  A  L  S  L  E  L  C  E  I  Y  V  Y  N  N  C  L  L  L  D  *  Y  M  L  *  T  C  R  A  *  C  F  T  F  S  M  P </second_frame>
            <third_frame>   P  P  N  Y  P  N  F  S  L  F  :  E  C  I  Y  I  Y  V  K  G  F  S  Q  S  H  F  L  K  K  P  N  F  F  L  Q  F  V  Q  E  I  S  K  N  K  L  S  H  G  W  R  Q  W  T  E  G  K  D  G  S  *  E  E  Y  G  K  D  E  R  P  K  G :   K  P  A  *  G  *  Q  E  G  Y  E  Y  P   : V  Q  G  V  H  A  D  I  H  L  H  H  F  *  S  Q  V  Q  R  T  C  *  G  E  A  S  Q  I  *  C  L  C  M  F  P  S  S  Q  E  M  I  H  I  S  E  S  G  L  M  V  V  S  Q  L  C  F  *  I  L  L  T  M  I  K  F  E  S  V  Q  K  L  L  L  R  S  A  S  N  C  *  W  H  L  V  W  N  C  V  K  Y  M  S  I  I  T  A  S  F  W  I  D  I  C  Y  R  L  V  E  R  N  A  L  P  S  Q  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54025" stop="53950"/>
                    <exon start="53864" stop="53824"/>
                    <exon start="51339" stop="51220"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMGGGNGQKAKMAREKNMEKMKGQKGSQLEANKKAMNIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYACFPHLKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53831" stop="53824"/>
                    <exon start="51339" stop="51144"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSARCACRHSFAPLLKSSAENMLRRSIPNLMSMHVSLISRNDSHFRVWADGCFPTMFLNSVNHDKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54478" e_stop="54447"/>
            <exon e_start="54128" e_stop="53950"/>
            <exon e_start="53864" e_stop="53824"/>
            <exon e_start="51339" e_stop="51023"/>
            <exon e_start="49628" e_stop="49592"/>
            <exon e_start="49463" e_stop="49446"/>
            <exon e_start="48919" e_stop="48908"/>
            <exon e_start="48203" e_stop="48182"/>
            <exon e_start="47568" e_stop="47540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.969"/>
          <exon-intron don_prob="0.958" acc_prob="0.986" e_score="0.849"/>
          <exon-intron don_prob="0.992" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.049" acc_prob="0.913" e_score="0.649"/>
          <exon-intron don_prob="0.591" acc_prob="0.797" e_score="0.611"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.667"/>
          <exon-intron don_prob="0.323" acc_prob="0.000" e_score="0.591"/>
          <exon-only e_score="0.586"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="54478" e_stop="54447" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54446" i_stop="54129" i_length="318"/>
          </intron>
          <exon e_serial="2" e_score="0.849">
            <gDNA_exon_boundary e_start="54128" e_stop="53950" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.986">
            <gDNA_intron_boundary i_start="53949" i_stop="53865" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53864" e_stop="53824" e_length="41"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.989">
            <gDNA_intron_boundary i_start="53823" i_stop="51340" i_length="2484"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51339" e_stop="51023" e_length="317"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="51022" i_stop="49629" i_length="1394"/>
          </intron>
          <exon e_serial="5" e_score="0.649">
            <gDNA_exon_boundary e_start="49628" e_stop="49592" e_length="37"/>
          </exon>
          <intron i_serial="5" don_prob="0.049" acc_prob="0.913">
            <gDNA_intron_boundary i_start="49591" i_stop="49464" i_length="128"/>
          </intron>
          <exon e_serial="6" e_score="0.611">
            <gDNA_exon_boundary e_start="49463" e_stop="49446" e_length="18"/>
          </exon>
          <intron i_serial="6" don_prob="0.591" acc_prob="0.797">
            <gDNA_intron_boundary i_start="49445" i_stop="48920" i_length="526"/>
          </intron>
          <exon e_serial="7" e_score="0.667">
            <gDNA_exon_boundary e_start="48919" e_stop="48908" e_length="12"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48907" i_stop="48204" i_length="704"/>
          </intron>
          <exon e_serial="8" e_score="0.591">
            <gDNA_exon_boundary e_start="48203" e_stop="48182" e_length="22"/>
          </exon>
          <intron i_serial="8" don_prob="0.323" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48181" i_stop="47569" i_length="613"/>
          </intron>
          <exon e_serial="9" e_score="0.586">
            <gDNA_exon_boundary e_start="47568" e_stop="47540" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54478" stop="54447"/>
              <exon start="54128" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54080" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54079" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54078" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54073" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54071" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54071" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608037" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54071" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54070" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54069" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54063" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622123" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54062" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54061" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54059" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54059" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54058" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51023"/>
              <exon start="49628" stop="49592"/>
              <exon start="49463" stop="49446"/>
              <exon start="48919" stop="48908"/>
              <exon start="48203" stop="48182"/>
              <exon start="47568" stop="47540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54036" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54035" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586361" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54014" stop="53950"/>
              <exon start="53864" stop="53824"/>
              <exon start="51339" stop="51054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51261" stop="51038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216259" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCACCCAACTACCCTAATTTCTCACTTTTT : GAATGTATATATATATATGTAAAGGGTTTCTCTCAAAGCCACTTCCTTAAAAAACCCAATTTTTTCCTCCAATTTGTACAGGAAATATCGAAGAACAAACTAAGCCATGGGTGGAGGCAATGGACAGAAGGCAAAGATGGCTCGTGAGAAGAATATGGAAAAGATGAAAGGCCAAAAGG : GAAGCCAGCTTGAGGCTAACAAGAAGGCTATGAATATCCAG : TGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGATATATGCTATAGACTT : GTTGAAAATGAAAACAAAAATTAAATGCTAACAATTA : AAACGCAGGATACAAAAA : AATAACAAAAAG : GGGGTGGTGGGTGGGGGGGGGT : ATTTTCTCAAACAAGTGTGACAAATTAAA</gDNA_template>
            <first_frame> H  H  P  T  T  L  I  S  H  F  L :   N  V  Y  I  Y  M  *  R  V  S  L  K  A  T  S  L  K  N  P  I  F  S  S  N  L  Y  R  K  Y  R  R  T  N  *  A  M  G  G  G  N  G  Q  K  A  K  M  A  R  E  K  N  M  E  K  M  K  G  Q  K   : G  S  Q  L  E  A  N  K  K  A  M  N  I  Q  :  C  K  V  C  M  Q  T  F  I  C  T  T  S  E  V  K  C  R  E  H  A  E  A  K  H  P  K  S  D  V  Y  A  C  F  P  H  L  K  K  *  F  T  F  Q  S  L  G  *  W  L  F  P  N  Y  V  S  K  F  C  *  P  *  *  S  L  N  L  F  K  S  C  C  S  V  L  L  Q  T  V  D  G  T  *  F  G  T  V  *  N  I  C  L  *  *  L  P  P  F  G  L  I  Y  A  I  D  L :   L  K  M  K  T  K  I  K  C  *  Q  L  :  K  R  R  I  Q  K  :  N  N  K  K  :  G  V  V  G  G  G  G   : Y  F  L  K  Q  V  *  Q  I  K </first_frame>
            <second_frame>  T  T  Q  L  P  *  F  L  T  F   : *  M  Y  I  Y  I  C  K  G  F  L  S  K  P  L  P  *  K  T  Q  F  F  P  P  I  C  T  G  N  I  E  E  Q  T  K  P  W  V  E  A  M  D  R  R  Q  R  W  L  V  R  R  I  W  K  R  *  K  A  K  R  :  E  A  S  L  R  L  T  R  R  L  *  I  S  S :   A  R  C  A  C  R  H  S  F  A  P  L  L  K  S  S  A  E  N  M  L  R  R  S  I  P  N  L  M  S  M  H  V  S  L  I  S  R  N  D  S  H  F  R  V  W  A  D  G  C  F  P  T  M  F  L  N  S  V  N  H  D  K  V  *  I  C  S  K  V  V  A  P  F  C  F  K  L  L  M  A  L  S  L  E  L  C  E  I  Y  V  Y  N  N  C  L  L  L  D  *  Y  M  L  *  T   : C  *  K  *  K  Q  K  L  N  A  N  N  * :   N  A  G  Y  K  K :   I  T  K  R :   G  W  W  V  G  G  G  :  I  F  S  N  K  C  D  K  L   </second_frame>
            <third_frame>   P  P  N  Y  P  N  F  S  L  F  :  E  C  I  Y  I  Y  V  K  G  F  S  Q  S  H  F  L  K  K  P  N  F  F  L  Q  F  V  Q  E  I  S  K  N  K  L  S  H  G  W  R  Q  W  T  E  G  K  D  G  S  *  E  E  Y  G  K  D  E  R  P  K  G :   K  P  A  *  G  *  Q  E  G  Y  E  Y  P   : V  Q  G  V  H  A  D  I  H  L  H  H  F  *  S  Q  V  Q  R  T  C  *  G  E  A  S  Q  I  *  C  L  C  M  F  P  S  S  Q  E  M  I  H  I  S  E  S  G  L  M  V  V  S  Q  L  C  F  *  I  L  L  T  M  I  K  F  E  S  V  Q  K  L  L  L  R  S  A  S  N  C  *  W  H  L  V  W  N  C  V  K  Y  M  S  I  I  T  A  S  F  W  I  D  I  C  Y  R  L  :  V  E  N  E  N  K  N  *  M  L  T  I   : K  T  Q  D  T  K   : K  *  Q  K   : G  G  G  G  W  G  G  V :   F  S  Q  T  S  V  T  N  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54025" stop="53950"/>
                    <exon start="53864" stop="53824"/>
                    <exon start="51339" stop="51220"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMGGGNGQKAKMAREKNMEKMKGQKGSQLEANKKAMNIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYACFPHLKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53831" stop="53824"/>
                    <exon start="51339" stop="51144"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSARCACRHSFAPLLKSSAENMLRRSIPNLMSMHVSLISRNDSHFRVWADGCFPTMFLNSVNHDKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="51343" e_stop="51038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="51343" e_stop="51038" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51343" stop="51043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51261" stop="51038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216259" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGTGCAAGGTGTGCATGCAGACATTCATTTGCACCACTTCTGAAGTCAAGTGCAGAGAACATGCTGAGGCGAAGCATCCCAAATCTGATGTCTATGCATGTTTCCCTCATCTCAAGAAATGATTCACATTTCAGAGTCTGGGCTGATGGTTGTTTCCCAACTATGTTTCTAAATTCTGTTAACCATGATAAAGTTTGAATCTGTTCAAAAGTTGTTGCTCCGTTCTGCTTCAAACTGTTGATGGCACTTAGTTTGGAACTGTGTGAAATATATGTCTATAATAACTGCCTCCTTTTGGATTGAT</gDNA_template>
            <first_frame> A  V  Q  G  V  H  A  D  I  H  L  H  H  F  *  S  Q  V  Q  R  T  C  *  G  E  A  S  Q  I  *  C  L  C  M  F  P  S  S  Q  E  M  I  H  I  S  E  S  G  L  M  V  V  S  Q  L  C  F  *  I  L  L  T  M  I  K  F  E  S  V  Q  K  L  L  L  R  S  A  S  N  C  *  W  H  L  V  W  N  C  V  K  Y  M  S  I  I  T  A  S  F  W  I  D </first_frame>
            <second_frame>  Q  C  K  V  C  M  Q  T  F  I  C  T  T  S  E  V  K  C  R  E  H  A  E  A  K  H  P  K  S  D  V  Y  A  C  F  P  H  L  K  K  *  F  T  F  Q  S  L  G  *  W  L  F  P  N  Y  V  S  K  F  C  *  P  *  *  S  L  N  L  F  K  S  C  C  S  V  L  L  Q  T  V  D  G  T  *  F  G  T  V  *  N  I  C  L  *  *  L  P  P  F  G  L   </second_frame>
            <third_frame>   S  A  R  C  A  C  R  H  S  F  A  P  L  L  K  S  S  A  E  N  M  L  R  R  S  I  P  N  L  M  S  M  H  V  S  L  I  S  R  N  D  S  H  F  R  V  W  A  D  G  C  F  P  T  M  F  L  N  S  V  N  H  D  K  V  *  I  C  S  K  V  V  A  P  F  C  F  K  L  L  M  A  L  S  L  E  L  C  E  I  Y  V  Y  N  N  C  L  L  L  D  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51341" stop="51144"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SARCACRHSFAPLLKSSAENMLRRSIPNLMSMHVSLISRNDSHFRVWADGCFPTMFLNSVNHDKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="53415" e_stop="52931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="53415" e_stop="52931" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53415" stop="52931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53415" stop="52955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAAC</gDNA_template>
            <first_frame> G  V  W  G  G  *  C  V  R  C  D  T  P  I  L  G  K  E  V  F  K  F  V  Y  R  F  I  L  L  I  S  C  *  *  V  F  N  R  I  I  I  F  L  Q  F  *  H  *  L  L  K  H  N  *  P  F  E  *  F  L  Y  S  I  C  A  I  V  T  Y  F  L  I  A  L  N  S  G  F  Y  I  V  M  Y  L  D  V  T  S  Y  *  M  *  S  V  C  P  L  L  C  L  G  M  L  L  C  I  G  L  G  S  V  E  K  V  D  V  I  F  S  F  I  M  S  Y  T  R  Q  D  *  K  R  R  K  F  S  Y  H  F  R  D  Y  F  S  K  *  Q  V  R  N  F  L  C  F  Y  Q  N  N  I  C  *  T   </first_frame>
            <second_frame>  G  F  G  E  D  S  V  Y  A  A  I  L  L  S  L  E  R  K  C  S  S  S  C  I  D  L  F  S  *  Y  L  V  N  E  S  L  I  G  *  L  F  S  Y  N  S  D  I  S  F  *  N  I  T  D  H  L  S  S  F  C  I  Q  F  V  Q  L  *  H  I  F  *  *  L  *  I  V  V  F  T  L  L  C  I  W  M  L  Q  A  I  R  C  E  A  S  V  H  S  F  A  *  V  C  S  Y  A  L  A  W  E  V  W  K  K  W  T  *  S  S  P  L  *  C  H  I  H  V  K  I  K  K  G  E  N  F  H  T  I  F  V  I  I  L  A  S  S  K  S  E  I  F  F  V  F  I  R  T  I  Y  V  E  Q  </second_frame>
            <third_frame>   G  L  G  R  I  V  C  T  L  R  Y  S  Y  P  W  K  G  S  V  Q  V  R  V  *  I  Y  S  L  N  I  L  L  M  S  L  *  *  D  N  Y  F  L  T  I  L  T  L  A  F  K  T  *  L  T  I  *  V  V  F  V  F  N  L  C  N  C  D  I  F  F  N  S  F  E  *  W  F  L  H  C  Y  V  F  G  C  Y  K  L  L  D  V  K  R  L  S  T  P  L  P  R  Y  A  P  M  H  W  L  G  K  C  G  K  S  G  R  N  L  L  L  Y  N  V  I  Y  T  S  R  L  K  K  E  K  I  F  I  P  F  S  *  L  F  *  Q  V  A  S  P  K  F  S  L  F  L  S  E  Q  Y  M  L  N  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0008K13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="48905" e_stop="48295"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="48905" e_stop="48295" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48905" stop="48295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436190" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGCTCGTAGCGAGAAAAAACCGATTGCACATATATTTTTATTTACATGCCTAAACTGCGATTCCGATGACTATTTTACACTGATTTTCCCCAAATTTTCGATCGTCATAAAGCCAAAAAAACAGATAGAAAAATTCGATCCAAAACAATTTACATACTTACAGTGAGTTAAAATCACTCGATTTTCACTTATCTTTACCGCTAGCGAGGGTGGTGCTGAGGAAGCCGGAACCGAAACTGCGACGCCGGAGATCTAACAGCAACGCCGTGCCAACATATACCACCTCTACACAACTCATCGGAATGATGACGTGGCTGATTCCGATTCAGAGTAAGATGACGATCGCGTGTCAAAGCACACCTAGTAACCTTACGTGACACATCCCACGTCAAACTCAAAATCAACACAGTACCTACAACAGCTGTTGACACAATCAGCACAAAAACTCCGCCGTAGCTCCGTCCTGTCATCAATCCGTACGCCTTCATTGCCGCTATCACTAACAGGTACAACGTCGTTAAATTCCCCACTACAGTATCCGAAATCGCCATTTTTATCGGTCTTCTAAGATCAAAATCAAGTTGAAATTTTGGTAAAATTTTAGTCTA</gDNA_template>
            <first_frame> Q  S  S  *  R  E  K  T  D  C  T  Y  I  F  I  Y  M  P  K  L  R  F  R  *  L  F  Y  T  D  F  P  Q  I  F  D  R  H  K  A  K  K  T  D  R  K  I  R  S  K  T  I  Y  I  L  T  V  S  *  N  H  S  I  F  T  Y  L  Y  R  *  R  G  W  C  *  G  S  R  N  R  N  C  D  A  G  D  L  T  A  T  P  C  Q  H  I  P  P  L  H  N  S  S  E  *  *  R  G  *  F  R  F  R  V  R  *  R  S  R  V  K  A  H  L  V  T  L  R  D  T  S  H  V  K  L  K  I  N  T  V  P  T  T  A  V  D  T  I  S  T  K  T  P  P  *  L  R  P  V  I  N  P  Y  A  F  I  A  A  I  T  N  R  Y  N  V  V  K  F  P  T  T  V  S  E  I  A  I  F  I  G  L  L  R  S  K  S  S  *  N  F  G  K  I  L  V   </first_frame>
            <second_frame>  K  A  R  S  E  K  K  P  I  A  H  I  F  L  F  T  C  L  N  C  D  S  D  D  Y  F  T  L  I  F  P  K  F  S  I  V  I  K  P  K  K  Q  I  E  K  F  D  P  K  Q  F  T  Y  L  Q  *  V  K  I  T  R  F  S  L  I  F  T  A  S  E  G  G  A  E  E  A  G  T  E  T  A  T  P  E  I  *  Q  Q  R  R  A  N  I  Y  H  L  Y  T  T  H  R  N  D  D  V  A  D  S  D  S  E  *  D  D  D  R  V  S  K  H  T  *  *  P  Y  V  T  H  P  T  S  N  S  K  S  T  Q  Y  L  Q  Q  L  L  T  Q  S  A  Q  K  L  R  R  S  S  V  L  S  S  I  R  T  P  S  L  P  L  S  L  T  G  T  T  S  L  N  S  P  L  Q  Y  P  K  S  P  F  L  S  V  F  *  D  Q  N  Q  V  E  I  L  V  K  F  *  S  </second_frame>
            <third_frame>   K  L  V  A  R  K  N  R  L  H  I  Y  F  Y  L  H  A  *  T  A  I  P  M  T  I  L  H  *  F  S  P  N  F  R  S  S  *  S  Q  K  N  R  *  K  N  S  I  Q  N  N  L  H  T  Y  S  E  L  K  S  L  D  F  H  L  S  L  P  L  A  R  V  V  L  R  K  P  E  P  K  L  R  R  R  R  S  N  S  N  A  V  P  T  Y  T  T  S  T  Q  L  I  G  M  M  T  W  L  I  P  I  Q  S  K  M  T  I  A  C  Q  S  T  P  S  N  L  T  *  H  I  P  R  Q  T  Q  N  Q  H  S  T  Y  N  S  C  *  H  N  Q  H  K  N  S  A  V  A  P  S  C  H  Q  S  V  R  L  H  C  R  Y  H  *  Q  V  Q  R  R  *  I  P  H  Y  S  I  R  N  R  H  F  Y  R  S  S  K  I  K  I  K  L  K  F  W  *  N  F  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48774" stop="48526"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNSIQNNLHTYSELKSLDFHLSLPLARVVLRKPEPKLRRRRSNSNAVPTYTTSTQLIGMMTWLIPIQSKMTIACQSTPSNLT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48535" stop="48335"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYVTHPTSNSKSTQYLQQLLTQSAQKLRRSSVLSSIRTPSLPLSLTGTTSLNSPLQYPKSPFLSVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="48135" PGL_stop="48838"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48135" e_stop="48838"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="48135" e_stop="48838" e_length="704"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48135" stop="48838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48135" stop="48646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAAAATAAAAAGAAGATAAGCTCAGAACCCATAGCATTATCTTACACCCCCCCCCACCCACCACCCCCTACCCCAACCCAAAATCCAAAATTTCGTAATTCTCACTCCATACCATAATACCCTTTTAAAACCCTCTAATATCAGTTCACTACCTACTTTAGACTAAAATTTTACCAAAATTTCAACTTGATTTTGATCTTAGAAGACCGATAAAAATGGCGATTTCGGATACTGTAGTGGGGAATTTAACGACGTTGTACCTGTTAGTGATAGCGGCAATGAAGGCGTACGGATTGATGACAGGACGGAGCTACGGCGGAGTTTTTGTGCTGATTGTGTCAACAGCTGTTGTAGGTACTGTGTTGATTTTGAGTTTGACGTGGGATGTGTCACGTAAGGTTACTAGGTGTGCTTTGACACGCGATCGTCATCTTACTCTGAATCGGAATCAGCCACGTCATCATTCCGATGAGTTGTGTAGAGGTGGTATATGTTGGCACGGCGTTGCTGTTAGATCTCCGGCGTCGCAGTTTCGGTTCCGGCTTCCTCAGCACCACCCTCGCTAGCGGTAAAGATAAGTGAAAATCGAGTGATTTTAACTCACTGTAAGTATGTAAATTGTTTTGGATCGAATTTTTCTATCTGTTTTTTTGGCTTTATGACGATCGAAAATTTGGGGAAAATCAGTGTAAAATAGTCATC</gDNA_template>
            <first_frame> L  K  I  K  R  R  *  A  Q  N  P  *  H  Y  L  T  P  P  P  T  H  H  P  L  P  Q  P  K  I  Q  N  F  V  I  L  T  P  Y  H  N  T  L  L  K  P  S  N  I  S  S  L  P  T  L  D  *  N  F  T  K  I  S  T  *  F  *  S  *  K  T  D  K  N  G  D  F  G  Y  C  S  G  E  F  N  D  V  V  P  V  S  D  S  G  N  E  G  V  R  I  D  D  R  T  E  L  R  R  S  F  C  A  D  C  V  N  S  C  C  R  Y  C  V  D  F  E  F  D  V  G  C  V  T  *  G  Y  *  V  C  F  D  T  R  S  S  S  Y  S  E  S  E  S  A  T  S  S  F  R  *  V  V  *  R  W  Y  M  L  A  R  R  C  C  *  I  S  G  V  A  V  S  V  P  A  S  S  A  P  P  S  L  A  V  K  I  S  E  N  R  V  I  L  T  H  C  K  Y  V  N  C  F  G  S  N  F  S  I  C  F  F  G  F  M  T  I  E  N  L  G  K  I  S  V  K  *  S   </first_frame>
            <second_frame>  *  K  *  K  E  D  K  L  R  T  H  S  I  I  L  H  P  P  P  P  T  T  P  Y  P  N  P  K  S  K  I  S  *  F  S  L  H  T  I  I  P  F  *  N  P  L  I  S  V  H  Y  L  L  *  T  K  I  L  P  K  F  Q  L  D  F  D  L  R  R  P  I  K  M  A  I  S  D  T  V  V  G  N  L  T  T  L  Y  L  L  V  I  A  A  M  K  A  Y  G  L  M  T  G  R  S  Y  G  G  V  F  V  L  I  V  S  T  A  V  V  G  T  V  L  I  L  S  L  T  W  D  V  S  R  K  V  T  R  C  A  L  T  R  D  R  H  L  T  L  N  R  N  Q  P  R  H  H  S  D  E  L  C  R  G  G  I  C  W  H  G  V  A  V  R  S  P  A  S  Q  F  R  F  R  L  P  Q  H  H  P  R  *  R  *  R  *  V  K  I  E  *  F  *  L  T  V  S  M  *  I  V  L  D  R  I  F  L  S  V  F  L  A  L  *  R  S  K  I  W  G  K  S  V  *  N  S  H  </second_frame>
            <third_frame>   E  N  K  K  K  I  S  S  E  P  I  A  L  S  Y  T  P  P  H  P  P  P  P  T  P  T  Q  N  P  K  F  R  N  S  H  S  I  P  *  Y  P  F  K  T  L  *  Y  Q  F  T  T  Y  F  R  L  K  F  Y  Q  N  F  N  L  I  L  I  L  E  D  R  *  K  W  R  F  R  I  L  *  W  G  I  *  R  R  C  T  C  *  *  *  R  Q  *  R  R  T  D  *  *  Q  D  G  A  T  A  E  F  L  C  *  L  C  Q  Q  L  L  *  V  L  C  *  F  *  V  *  R  G  M  C  H  V  R  L  L  G  V  L  *  H  A  I  V  I  L  L  *  I  G  I  S  H  V  I  I  P  M  S  C  V  E  V  V  Y  V  G  T  A  L  L  L  D  L  R  R  R  S  F  G  S  G  F  L  S  T  T  L  A  S  G  K  D  K  *  K  S  S  D  F  N  S  L  *  V  C  K  L  F  W  I  E  F  F  Y  L  F  F  W  L  Y  D  D  R  K  F  G  E  N  Q  C  K  I  V  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48298" stop="48702"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKILPKFQLDFDLRRPIKMAISDTVVGNLTTLYLLVIAAMKAYGLMTGRSYGGVFVLIVSTAVVGTVLILSLTWDVSRKVTRCALTRDRHLTLNRNQPRHHSDELCRGGICWHGVAVRSPASQFRFRLPQHHPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="73096" PGL_stop="76922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73110" e_stop="74417"/>
            <exon e_start="74510" e_stop="74601"/>
            <exon e_start="74721" e_stop="74766"/>
            <exon e_start="76668" e_stop="76922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.767" acc_prob="0.994" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="73110" e_stop="74417" e_length="1308"/>
          </exon>
          <intron i_serial="1" don_prob="0.767" acc_prob="0.994">
            <gDNA_intron_boundary i_start="74418" i_stop="74509" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74510" e_stop="74601" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="74602" i_stop="74720" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74721" e_stop="74766" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74767" i_stop="76667" i_length="1901"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="76668" e_stop="76922" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73110" stop="73773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73339" stop="73805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73614" stop="74343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73614" stop="74006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74110" stop="74417"/>
              <exon start="74510" stop="74601"/>
              <exon start="74721" stop="74766"/>
              <exon start="76668" stop="76922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATGACTTTACGGTCGAAAAGGTTTGTGAAAATCTTGATTTGAATAAGCACTGTGGTGGTGAAAGTGATGATCATGATGATGCAGATGTGTGCAGCAAAATTGAGTTGATGGAGGAAAAGGATGAGGTTAAGAAGATTGATGAGTTGCTTGTTGTGAAGGAGAAAGATACCGCGAATGCTGTGGTTGTTGATGAAGTCAAAGTAGGTGAAAATGAGGTGGTTGAGGTAGGAGGTGGGTTGAGTAAAGGGGATGATGAGAAGACGGATAAGATGGCGATGGATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTAGGAGAGGACACAATCAATATATACTAAAGAAGATTAGAAGGAACACTGCTGAAAATGGGGAAGATAAATCACCATCTCACATATAGTTTGATCGACTTTGAGTTTAATCATTCACGATTGAATTCCTTAACGTTGTTGTATGATCTGATCTAAAGTAGCTTTCCCCTTGCATAGTAGAACTAGCATTTATTCTTTACTTTTTTTCATCAGATCTACCGTATCCTGGTTTTACCAGAGAATAGTTTGACCAGAAACTAGAATAGATATCTATAGCCTAAATTTCGTAGTTAAATTGAGAGGACGGAGTCAGGAAACTAAACATGATATTTAGTACATTTATATCATAAGAAACTTGTGTTAGAATTTAGAAAAAGATACCTAGCATAAATTCAATAAGCAGTAAAGGACAGACCTTCAAACTACTTTCGGGTGTAGTTTGATTGCTAGTTATACAACAGGAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAG : AATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAG : GACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAG : GAATAGGTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCGTTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGTTATTTCCGCTAAATAAAAACGACACTATATTTAGAGAAACAATGATCTCCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCATTGGTTATTATTATTATT</gDNA_template>
            <first_frame> M  M  T  L  R  S  K  R  F  V  K  I  L  I  *  I  S  T  V  V  V  K  V  M  I  M  M  M  Q  M  C  A  A  K  L  S  *  W  R  K  R  M  R  L  R  R  L  M  S  C  L  L  *  R  R  K  I  P  R  M  L  W  L  L  M  K  S  K  *  V  K  M  R  W  L  R  *  E  V  G  *  V  K  G  M  M  R  R  R  I  R  W  R  W  M  K  I  L  M  M  I  G  R  E  L  R  E  V  N  W  R  R  N  L  L  K  L  L  T  L  W  M  G  E  M  E  R  I  V  V  W  R  I  W  G  V  N  *  *  C  N  C  M  D  S  R  K  L  Q  S  K  D  L  V  T  N  L  N  Q  W  H  *  K  S  M  P  V  P  N  G  I  T  S  Y  S  K  K  Y  E  L  *  H  I  V  L  Y  S  I  S  I  A  L  I  F  *  N  V  L  *  F  V  *  T  K  K  S  N  F  C  S  E  C  L  R  L  S  S  *  L  D  I  C  D  Y  W  I  S  R  S  F  C  R  R  G  H  N  Q  Y  I  L  K  K  I  R  R  N  T  A  E  N  G  E  D  K  S  P  S  H  I  *  F  D  R  L  *  V  *  S  F  T  I  E  F  L  N  V  V  V  *  S  D  L  K  *  L  S  P  C  I  V  E  L  A  F  I  L  Y  F  F  S  S  D  L  P  Y  P  G  F  T  R  E  *  F  D  Q  K  L  E  *  I  S  I  A  *  I  S  *  L  N  *  E  D  G  V  R  K  L  N  M  I  F  S  T  F  I  S  *  E  T  C  V  R  I  *  K  K  I  P  S  I  N  S  I  S  S  K  G  Q  T  F  K  L  L  S  G  V  V  *  L  L  V  I  Q  Q  E  *  K  L  L  S  V  S  D  G  G  Q  *  F  H  C  A  R  N  A  W  Q  K  M  G  S  M  N  Q  E  V  A  M  E  Q  Y  I  K  L  L  S  D  H  V  P  N  W  T  H  H  S  K  :  N  D  C  E  V  G  S  S  E  T  K  M  P  G  D  P  D  P  I  P  D  S  S  N  D  T  G  K  D  E  R :   T  Q  E  T  N  R  A  A  E  G  D  K  G  E  K  :  E  *  V  *  E  L  T  S  R  H  N  A  G  T  A  S  R  I  S  G  R  C  S  S  *  H  N  L  V  L  P  I  V  P  L  S  D  Y  Y  A  S  T  L  H  M  Y  I  V  I  S  A  K  *  K  R  H  Y  I  *  R  N  N  D  L  L  V  S  M  T  F  Y  Y  M  K  *  M  I  I  S  L  V  I  I  I  I </first_frame>
            <second_frame>  *  *  L  Y  G  R  K  G  L  *  K  S  *  F  E  *  A  L  W  W  *  K  *  *  S  *  *  C  R  C  V  Q  Q  N  *  V  D  G  G  K  G  *  G  *  E  D  *  *  V  A  C  C  E  G  E  R  Y  R  E  C  C  G  C  *  *  S  Q  S  R  *  K  *  G  G  *  G  R  R  W  V  E  *  R  G  *  *  E  D  G  *  D  G  D  G  *  R  Y  *  *  *  L  G  G  N  *  E  K  *  I  G  G  G  I  C  *  S  C  *  L  C  G  W  G  K  W  K  E  *  W  Y  G  E  Y  G  E  *  I  D  D  A  I  V  W  T  P  E  N  C  N  R  R  T  L  L  R  T  S  T  N  G  I  E  S  L  C  P  C  Q  M  V  *  P  H  T  P  K  N  M  S  F  S  I  L  F  C  T  L  F  Q  L  H  *  F  F  K  M  F  F  D  L  F  E  P  K  K  V  I  S  V  A  N  A  C  V  Y  L  V  S  W  I  F  V  I  I  G  L  V  E  A  F  V  G  E  D  T  I  N  I  Y  *  R  R  L  E  G  T  L  L  K  M  G  K  I  N  H  H  L  T  Y  S  L  I  D  F  E  F  N  H  S  R  L  N  S  L  T  L  L  Y  D  L  I  *  S  S  F  P  L  A  *  *  N  *  H  L  F  F  T  F  F  H  Q  I  Y  R  I  L  V  L  P  E  N  S  L  T  R  N  *  N  R  Y  L  *  P  K  F  R  S  *  I  E  R  T  E  S  G  N  *  T  *  Y  L  V  H  L  Y  H  K  K  L  V  L  E  F  R  K  R  Y  L  A  *  I  Q  *  A  V  K  D  R  P  S  N  Y  F  R  V  *  F  D  C  *  L  Y  N  R  N  E  S  C  F  L  *  V  M  E  D  N  N  S  I  V  Q  G  M  R  G  R  K  W  E  A  *  I  R  R  W  P  W  S  S  I  L  S  F  C  Q  T  M  S  P  I  G  H  I  I  V  R :   M  I  A  K  *  G  L  Q  K  L  K  C  L  E  I  Q  I  Q  F  L  I  L  L  M  I  Q  A  K  M  K   : G  H  R  K  R  T  V  L  Q  K  E  I  K  V  K  R :   N  R  Y  E  N  S  P  A  G  I  M  Q  V  L  L  Q  E  F  Q  V  V  A  A  H  N  T  T  W  F  S  L  L  F  P  Y  Q  I  I  M  H  L  L  C  I  C  I  *  L  F  P  L  N  K  N  D  T  I  F  R  E  T  M  I  S  L  F  Q  *  L  F  I  I  *  S  E  *  *  S  H  W  L  L  L  L   </second_frame>
            <third_frame>   D  D  F  T  V  E  K  V  C  E  N  L  D  L  N  K  H  C  G  G  E  S  D  D  H  D  D  A  D  V  C  S  K  I  E  L  M  E  E  K  D  E  V  K  K  I  D  E  L  L  V  V  K  E  K  D  T  A  N  A  V  V  V  D  E  V  K  V  G  E  N  E  V  V  E  V  G  G  G  L  S  K  G  D  D  E  K  T  D  K  M  A  M  D  E  D  I  D  D  D  W  E  G  I  E  R  S  E  L  E  E  E  F  A  K  A  V  N  F  V  D  G  G  N  G  K  N  S  G  M  E  N  M  G  S  E  L  M  M  Q  L  Y  G  L  Q  K  I  A  I  E  G  P  C  Y  E  P  Q  P  M  A  L  K  V  Y  A  R  A  K  W  Y  N  L  I  L  Q  K  I  *  A  L  A  Y  C  F  V  L  Y  F  N  C  I  N  F  L  K  C  S  L  I  C  L  N  Q  K  K  *  F  L  *  R  M  L  A  F  I  *  L  V  G  Y  L  *  L  L  D  *  *  K  L  L  *  E  R  T  Q  S  I  Y  T  K  E  D  *  K  E  H  C  *  K  W  G  R  *  I  T  I  S  H  I  V  *  S  T  L  S  L  I  I  H  D  *  I  P  *  R  C  C  M  I  *  S  K  V  A  F  P  L  H  S  R  T  S  I  Y  S  L  L  F  F  I  R  S  T  V  S  W  F  Y  Q  R  I  V  *  P  E  T  R  I  D  I  Y  S  L  N  F  V  V  K  L  R  G  R  S  Q  E  T  K  H  D  I  *  Y  I  Y  I  I  R  N  L  C  *  N  L  E  K  D  T  *  H  K  F  N  K  Q  *  R  T  D  L  Q  T  T  F  G  C  S  L  I  A  S  Y  T  T  G  M  K  A  A  F  C  K  *  W  R  T  I  I  P  L  C  K  E  C  V  A  E  N  G  K  H  E  S  G  G  G  H  G  A  V  Y  *  A  F  V  R  P  C  P  Q  L  D  T  S  *  *   : E  *  L  R  S  R  V  F  R  N  *  N  A  W  R  S  R  S  N  S  *  F  F  *  *  Y  R  Q  R  *  K  :  D  T  G  N  E  P  C  C  R  R  R  *  R  *  K   : G  I  G  M  R  T  H  Q  Q  A  *  C  R  Y  C  F  K  N  F  R  S  L  Q  L  I  T  Q  L  G  S  P  Y  C  S  L  I  R  L  L  C  I  Y  S  A  Y  V  Y  S  Y  F  R  *  I  K  T  T  L  Y  L  E  K  Q  *  S  P  C  F  N  D  F  L  L  Y  E  V  N  D  N  L  I  G  Y  Y  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73112" stop="73645"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDFTVEKVCENLDLNKHCGGESDDHDDADVCSKIELMEEKDEVKKIDELLVVKEKDTANAVVVDEVKVGENEVVEVGGGLSKGDDEKTDKMAMDEDIDDDWEGIERSELEEEFAKAVNFVDGGNGKNSGMENMGSELMMQLYGLQKIAIEGPCYEPQPMALKVYARAKWYNLILQKI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74526" stop="74601"/>
                    <exon start="74721" stop="74766"/>
                    <exon start="76668" stop="76809"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLQKLKCLEIQIQFLILLMIQAKMKGHRKRTVLQKEIKVKRNRYENSPAGIMQVLLQEFQVVAAHNTTWFSLLFPYQIIMHLLCICI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73391" e_stop="73617"/>
            <exon e_start="74262" e_stop="74417"/>
            <exon e_start="74510" e_stop="74601"/>
            <exon e_start="74721" e_stop="74766"/>
            <exon e_start="75628" e_stop="75638"/>
            <exon e_start="76674" e_stop="76905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.048" e_score="0.987"/>
          <exon-intron don_prob="0.767" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.902"/>
          <exon-intron don_prob="0.998" acc_prob="0.511" e_score="0.913"/>
          <exon-intron don_prob="0.085" acc_prob="0.893" e_score="0.727"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="73391" e_stop="73617" e_length="227"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.048">
            <gDNA_intron_boundary i_start="73618" i_stop="74261" i_length="644"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74262" e_stop="74417" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.767" acc_prob="0.994">
            <gDNA_intron_boundary i_start="74418" i_stop="74509" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.902">
            <gDNA_exon_boundary e_start="74510" e_stop="74601" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="74602" i_stop="74720" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="0.913">
            <gDNA_exon_boundary e_start="74721" e_stop="74766" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.511">
            <gDNA_intron_boundary i_start="74767" i_stop="75627" i_length="861"/>
          </intron>
          <exon e_serial="5" e_score="0.727">
            <gDNA_exon_boundary e_start="75628" e_stop="75638" e_length="11"/>
          </exon>
          <intron i_serial="5" don_prob="0.085" acc_prob="0.893">
            <gDNA_intron_boundary i_start="75639" i_stop="76673" i_length="1035"/>
          </intron>
          <exon e_serial="6" e_score="0.931">
            <gDNA_exon_boundary e_start="76674" e_stop="76905" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73391" stop="73617"/>
              <exon start="74262" stop="74350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73573" stop="73617"/>
              <exon start="74262" stop="74417"/>
              <exon start="74510" stop="74519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74401" stop="74417"/>
              <exon start="74510" stop="74601"/>
              <exon start="74721" stop="74766"/>
              <exon start="75628" stop="75638"/>
              <exon start="76674" stop="76905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574101" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATG : GAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAG : AATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAG : GACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAG : GAACCAAGGAT : GTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCGTTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGTTATTTCCGCTAAATAAAAACGACACTATATTTAGAGAAACAATGATCTCCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCAT</gDNA_template>
            <first_frame> D  E  D  I  D  D  D  W  E  G  I  E  R  S  E  L  E  E  E  F  A  K  A  V  N  F  V  D  G  G  N  G  K  N  S  G  M  E  N  M  G  S  E  L  M  M  Q  L  Y  G  L  Q  K  I  A  I  E  G  P  C  Y  E  P  Q  P  M  A  L  K  V  Y  A  R  A  K  W :   N  E  S  C  F  L  *  V  M  E  D  N  N  S  I  V  Q  G  M  R  G  R  K  W  E  A  *  I  R  R  W  P  W  S  S  I  L  S  F  C  Q  T  M  S  P  I  G  H  I  I  V  R :   M  I  A  K  *  G  L  Q  K  L  K  C  L  E  I  Q  I  Q  F  L  I  L  L  M  I  Q  A  K  M  K   : G  H  R  K  R  T  V  L  Q  K  E  I  K  V  K  R :   N  Q  G   : C  M  R  T  H  Q  Q  A  *  C  R  Y  C  F  K  N  F  R  S  L  Q  L  I  T  Q  L  G  S  P  Y  C  S  L  I  R  L  L  C  I  Y  S  A  Y  V  Y  S  Y  F  R  *  I  K  T  T  L  Y  L  E  K  Q  *  S  P  C  F  N  D  F  L  L  Y  E  V  N  D  N  L   </first_frame>
            <second_frame>  M  K  I  L  M  M  I  G  R  E  L  R  E  V  N  W  R  R  N  L  L  K  L  L  T  L  W  M  G  E  M  E  R  I  V  V  W  R  I  W  G  V  N  *  *  C  N  C  M  D  S  R  K  L  Q  S  K  D  L  V  T  N  L  N  Q  W  H  *  K  S  M  P  V  P  N   : G  M  K  A  A  F  C  K  *  W  R  T  I  I  P  L  C  K  E  C  V  A  E  N  G  K  H  E  S  G  G  G  H  G  A  V  Y  *  A  F  V  R  P  C  P  Q  L  D  T  S  *  *   : E  *  L  R  S  R  V  F  R  N  *  N  A  W  R  S  R  S  N  S  *  F  F  *  *  Y  R  Q  R  *  K  :  D  T  G  N  E  P  C  C  R  R  R  *  R  *  K   : G  T  K  D  :  V  *  E  L  T  S  R  H  N  A  G  T  A  S  R  I  S  G  R  C  S  S  *  H  N  L  V  L  P  I  V  P  L  S  D  Y  Y  A  S  T  L  H  M  Y  I  V  I  S  A  K  *  K  R  H  Y  I  *  R  N  N  D  L  L  V  S  M  T  F  Y  Y  M  K  *  M  I  I  S  </second_frame>
            <third_frame>   *  R  Y  *  *  *  L  G  G  N  *  E  K  *  I  G  G  G  I  C  *  S  C  *  L  C  G  W  G  K  W  K  E  *  W  Y  G  E  Y  G  E  *  I  D  D  A  I  V  W  T  P  E  N  C  N  R  R  T  L  L  R  T  S  T  N  G  I  E  S  L  C  P  C  Q  M  :  E  *  K  L  L  S  V  S  D  G  G  Q  *  F  H  C  A  R  N  A  W  Q  K  M  G  S  M  N  Q  E  V  A  M  E  Q  Y  I  K  L  L  S  D  H  V  P  N  W  T  H  H  S  K  :  N  D  C  E  V  G  S  S  E  T  K  M  P  G  D  P  D  P  I  P  D  S  S  N  D  T  G  K  D  E  R :   T  Q  E  T  N  R  A  A  E  G  D  K  G  E  K  :  E  P  R  M :   Y  E  N  S  P  A  G  I  M  Q  V  L  L  Q  E  F  Q  V  V  A  A  H  N  T  T  W  F  S  L  L  F  P  Y  Q  I  I  M  H  L  L  C  I  C  I  *  L  F  P  L  N  K  N  D  T  I  F  R  E  T  M  I  S  L  F  Q  *  L  F  I  I  *  S  E  *  *  S  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74301" stop="74417"/>
                    <exon start="74510" stop="74601"/>
                    <exon start="74721" stop="74766"/>
                    <exon start="75628" stop="75638"/>
                    <exon start="76674" stop="76809"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHCARNAWQKMGSMNQEVAMEQYIKLLSDHVPNWTHHSKNDCEVGSSETKMPGDPDPIPDSSNDTGKDERTQETNRAAEGDKGEKEPRMYENSPAGIMQVLLQEFQVVAAHNTTWFSLLFPYQIIMHLLCICI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73391" stop="73617"/>
                    <exon start="74262" stop="74283"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEDIDDDWEGIERSELEEEFAKAVNFVDGGNGKNSGMENMGSELMMQLYGLQKIAIEGPCYEPQPMALKVYARAKWNESCFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="73391" e_stop="73617"/>
            <exon e_start="74262" e_stop="74417"/>
            <exon e_start="74510" e_stop="74601"/>
            <exon e_start="74721" e_stop="74766"/>
            <exon e_start="76668" e_stop="76909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.048" e_score="0.987"/>
          <exon-intron don_prob="0.767" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="73391" e_stop="73617" e_length="227"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.048">
            <gDNA_intron_boundary i_start="73618" i_stop="74261" i_length="644"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74262" e_stop="74417" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.767" acc_prob="0.994">
            <gDNA_intron_boundary i_start="74418" i_stop="74509" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74510" e_stop="74601" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="74602" i_stop="74720" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74721" e_stop="74766" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74767" i_stop="76667" i_length="1901"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="76668" e_stop="76909" e_length="242"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73391" stop="73617"/>
              <exon start="74262" stop="74350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73478" stop="73617"/>
              <exon start="74262" stop="74417"/>
              <exon start="74510" stop="74601"/>
              <exon start="74721" stop="74766"/>
              <exon start="76668" stop="76909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73573" stop="73617"/>
              <exon start="74262" stop="74417"/>
              <exon start="74510" stop="74519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349126" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATG : GAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAG : AATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAG : GACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAG : GAATAGGTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCGTTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGTTATTTCCGCTAAATAAAAACGACACTATATTTAGAGAAACAATGATCTCCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCATTGGT</gDNA_template>
            <first_frame> D  E  D  I  D  D  D  W  E  G  I  E  R  S  E  L  E  E  E  F  A  K  A  V  N  F  V  D  G  G  N  G  K  N  S  G  M  E  N  M  G  S  E  L  M  M  Q  L  Y  G  L  Q  K  I  A  I  E  G  P  C  Y  E  P  Q  P  M  A  L  K  V  Y  A  R  A  K  W :   N  E  S  C  F  L  *  V  M  E  D  N  N  S  I  V  Q  G  M  R  G  R  K  W  E  A  *  I  R  R  W  P  W  S  S  I  L  S  F  C  Q  T  M  S  P  I  G  H  I  I  V  R :   M  I  A  K  *  G  L  Q  K  L  K  C  L  E  I  Q  I  Q  F  L  I  L  L  M  I  Q  A  K  M  K   : G  H  R  K  R  T  V  L  Q  K  E  I  K  V  K  R :   N  R  Y  E  N  S  P  A  G  I  M  Q  V  L  L  Q  E  F  Q  V  V  A  A  H  N  T  T  W  F  S  L  L  F  P  Y  Q  I  I  M  H  L  L  C  I  C  I  *  L  F  P  L  N  K  N  D  T  I  F  R  E  T  M  I  S  L  F  Q  *  L  F  I  I  *  S  E  *  *  S  H  W  </first_frame>
            <second_frame>  M  K  I  L  M  M  I  G  R  E  L  R  E  V  N  W  R  R  N  L  L  K  L  L  T  L  W  M  G  E  M  E  R  I  V  V  W  R  I  W  G  V  N  *  *  C  N  C  M  D  S  R  K  L  Q  S  K  D  L  V  T  N  L  N  Q  W  H  *  K  S  M  P  V  P  N   : G  M  K  A  A  F  C  K  *  W  R  T  I  I  P  L  C  K  E  C  V  A  E  N  G  K  H  E  S  G  G  G  H  G  A  V  Y  *  A  F  V  R  P  C  P  Q  L  D  T  S  *  *   : E  *  L  R  S  R  V  F  R  N  *  N  A  W  R  S  R  S  N  S  *  F  F  *  *  Y  R  Q  R  *  K  :  D  T  G  N  E  P  C  C  R  R  R  *  R  *  K   : G  I  G  M  R  T  H  Q  Q  A  *  C  R  Y  C  F  K  N  F  R  S  L  Q  L  I  T  Q  L  G  S  P  Y  C  S  L  I  R  L  L  C  I  Y  S  A  Y  V  Y  S  Y  F  R  *  I  K  T  T  L  Y  L  E  K  Q  *  S  P  C  F  N  D  F  L  L  Y  E  V  N  D  N  L  I  G </second_frame>
            <third_frame>   *  R  Y  *  *  *  L  G  G  N  *  E  K  *  I  G  G  G  I  C  *  S  C  *  L  C  G  W  G  K  W  K  E  *  W  Y  G  E  Y  G  E  *  I  D  D  A  I  V  W  T  P  E  N  C  N  R  R  T  L  L  R  T  S  T  N  G  I  E  S  L  C  P  C  Q  M  :  E  *  K  L  L  S  V  S  D  G  G  Q  *  F  H  C  A  R  N  A  W  Q  K  M  G  S  M  N  Q  E  V  A  M  E  Q  Y  I  K  L  L  S  D  H  V  P  N  W  T  H  H  S  K  :  N  D  C  E  V  G  S  S  E  T  K  M  P  G  D  P  D  P  I  P  D  S  S  N  D  T  G  K  D  E  R :   T  Q  E  T  N  R  A  A  E  G  D  K  G  E  K  :  E  *  V  *  E  L  T  S  R  H  N  A  G  T  A  S  R  I  S  G  R  C  S  S  *  H  N  L  V  L  P  I  V  P  L  S  D  Y  Y  A  S  T  L  H  M  Y  I  V  I  S  A  K  *  K  R  H  Y  I  *  R  N  N  D  L  L  V  S  M  T  F  Y  Y  M  K  *  M  I  I  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74526" stop="74601"/>
                    <exon start="74721" stop="74766"/>
                    <exon start="76668" stop="76809"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLQKLKCLEIQIQFLILLMIQAKMKGHRKRTVLQKEIKVKRNRYENSPAGIMQVLLQEFQVVAAHNTTWFSLLFPYQIIMHLLCICI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74301" stop="74417"/>
                    <exon start="74510" stop="74601"/>
                    <exon start="74721" stop="74766"/>
                    <exon start="76668" stop="76673"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHCARNAWQKMGSMNQEVAMEQYIKLLSDHVPNWTHHSKNDCEVGSSETKMPGDPDPIPDSSNDTGKDERTQETNRAAEGDKGEKE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73391" stop="73617"/>
                    <exon start="74262" stop="74283"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEDIDDDWEGIERSELEEEFAKAVNFVDGGNGKNSGMENMGSELMMQLYGLQKIAIEGPCYEPQPMALKVYARAKWNESCFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="73096" e_stop="73617"/>
            <exon e_start="74315" e_stop="74417"/>
            <exon e_start="74510" e_stop="74601"/>
            <exon e_start="74721" e_stop="74766"/>
            <exon e_start="76668" e_stop="76922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.763" e_score="0.983"/>
          <exon-intron don_prob="0.767" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="73096" e_stop="73617" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.763">
            <gDNA_intron_boundary i_start="73618" i_stop="74314" i_length="697"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74315" e_stop="74417" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.767" acc_prob="0.994">
            <gDNA_intron_boundary i_start="74418" i_stop="74509" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74510" e_stop="74601" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="74602" i_stop="74720" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74721" e_stop="74766" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74767" i_stop="76667" i_length="1901"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="76668" e_stop="76922" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73096" stop="73617"/>
              <exon start="74315" stop="74417"/>
              <exon start="74510" stop="74590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73375" stop="73617"/>
              <exon start="74315" stop="74417"/>
              <exon start="74510" stop="74601"/>
              <exon start="74721" stop="74766"/>
              <exon start="76668" stop="76922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719239" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGAAAAGGAAGATGATGACTTTACGGTCGAAAAGGTTTGTGAAAATCTTGATTTGAATAAGCACTGTGGTGGTGAAAGTGATGATCATGATGATGCAGATGTGTGCAGCAAAATTGAGTTGATGGAGGAAAAGGATGAGGTTAAGAAGATTGATGAGTTGCTTGTTGTGAAGGAGAAAGATACCGCGAATGCTGTGGTTGTTGATGAAGTCAAAGTAGGTGAAAATGAGGTGGTTGAGGTAGGAGGTGGGTTGAGTAAAGGGGATGATGAGAAGACGGATAAGATGGCGATGGATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATG : GAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAG : AATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAG : GACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAG : GAATAGGTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCGTTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGTTATTTCCGCTAAATAAAAACGACACTATATTTAGAGAAACAATGATCTCCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCATTGGTTATTATTATTATT</gDNA_template>
            <first_frame> G  *  K  G  R  *  *  L  Y  G  R  K  G  L  *  K  S  *  F  E  *  A  L  W  W  *  K  *  *  S  *  *  C  R  C  V  Q  Q  N  *  V  D  G  G  K  G  *  G  *  E  D  *  *  V  A  C  C  E  G  E  R  Y  R  E  C  C  G  C  *  *  S  Q  S  R  *  K  *  G  G  *  G  R  R  W  V  E  *  R  G  *  *  E  D  G  *  D  G  D  G  *  R  Y  *  *  *  L  G  G  N  *  E  K  *  I  G  G  G  I  C  *  S  C  *  L  C  G  W  G  K  W  K  E  *  W  Y  G  E  Y  G  E  *  I  D  D  A  I  V  W  T  P  E  N  C  N  R  R  T  L  L  R  T  S  T  N  G  I  E  S  L  C  P  C  Q  M  :  E  C  V  A  E  N  G  K  H  E  S  G  G  G  H  G  A  V  Y  *  A  F  V  R  P  C  P  Q  L  D  T  S  *  *   : E  *  L  R  S  R  V  F  R  N  *  N  A  W  R  S  R  S  N  S  *  F  F  *  *  Y  R  Q  R  *  K  :  D  T  G  N  E  P  C  C  R  R  R  *  R  *  K   : G  I  G  M  R  T  H  Q  Q  A  *  C  R  Y  C  F  K  N  F  R  S  L  Q  L  I  T  Q  L  G  S  P  Y  C  S  L  I  R  L  L  C  I  Y  S  A  Y  V  Y  S  Y  F  R  *  I  K  T  T  L  Y  L  E  K  Q  *  S  P  C  F  N  D  F  L  L  Y  E  V  N  D  N  L  I  G  Y  Y  Y  Y  </first_frame>
            <second_frame>  V  E  K  E  D  D  D  F  T  V  E  K  V  C  E  N  L  D  L  N  K  H  C  G  G  E  S  D  D  H  D  D  A  D  V  C  S  K  I  E  L  M  E  E  K  D  E  V  K  K  I  D  E  L  L  V  V  K  E  K  D  T  A  N  A  V  V  V  D  E  V  K  V  G  E  N  E  V  V  E  V  G  G  G  L  S  K  G  D  D  E  K  T  D  K  M  A  M  D  E  D  I  D  D  D  W  E  G  I  E  R  S  E  L  E  E  E  F  A  K  A  V  N  F  V  D  G  G  N  G  K  N  S  G  M  E  N  M  G  S  E  L  M  M  Q  L  Y  G  L  Q  K  I  A  I  E  G  P  C  Y  E  P  Q  P  M  A  L  K  V  Y  A  R  A  K  W :   N  A  W  Q  K  M  G  S  M  N  Q  E  V  A  M  E  Q  Y  I  K  L  L  S  D  H  V  P  N  W  T  H  H  S  K  :  N  D  C  E  V  G  S  S  E  T  K  M  P  G  D  P  D  P  I  P  D  S  S  N  D  T  G  K  D  E  R :   T  Q  E  T  N  R  A  A  E  G  D  K  G  E  K  :  E  *  V  *  E  L  T  S  R  H  N  A  G  T  A  S  R  I  S  G  R  C  S  S  *  H  N  L  V  L  P  I  V  P  L  S  D  Y  Y  A  S  T  L  H  M  Y  I  V  I  S  A  K  *  K  R  H  Y  I  *  R  N  N  D  L  L  V  S  M  T  F  Y  Y  M  K  *  M  I  I  S  L  V  I  I  I  I </second_frame>
            <third_frame>   L  K  R  K  M  M  T  L  R  S  K  R  F  V  K  I  L  I  *  I  S  T  V  V  V  K  V  M  I  M  M  M  Q  M  C  A  A  K  L  S  *  W  R  K  R  M  R  L  R  R  L  M  S  C  L  L  *  R  R  K  I  P  R  M  L  W  L  L  M  K  S  K  *  V  K  M  R  W  L  R  *  E  V  G  *  V  K  G  M  M  R  R  R  I  R  W  R  W  M  K  I  L  M  M  I  G  R  E  L  R  E  V  N  W  R  R  N  L  L  K  L  L  T  L  W  M  G  E  M  E  R  I  V  V  W  R  I  W  G  V  N  *  *  C  N  C  M  D  S  R  K  L  Q  S  K  D  L  V  T  N  L  N  Q  W  H  *  K  S  M  P  V  P  N   : G  M  R  G  R  K  W  E  A  *  I  R  R  W  P  W  S  S  I  L  S  F  C  Q  T  M  S  P  I  G  H  I  I  V  R :   M  I  A  K  *  G  L  Q  K  L  K  C  L  E  I  Q  I  Q  F  L  I  L  L  M  I  Q  A  K  M  K   : G  H  R  K  R  T  V  L  Q  K  E  I  K  V  K  R :   N  R  Y  E  N  S  P  A  G  I  M  Q  V  L  L  Q  E  F  Q  V  V  A  A  H  N  T  T  W  F  S  L  L  F  P  Y  Q  I  I  M  H  L  L  C  I  C  I  *  L  F  P  L  N  K  N  D  T  I  F  R  E  T  M  I  S  L  F  Q  *  L  F  I  I  *  S  E  *  *  S  H  W  L  L  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73097" stop="73617"/>
                    <exon start="74315" stop="74417"/>
                    <exon start="74510" stop="74601"/>
                    <exon start="74721" stop="74766"/>
                    <exon start="76668" stop="76673"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEKEDDDFTVEKVCENLDLNKHCGGESDDHDDADVCSKIELMEEKDEVKKIDELLVVKEKDTANAVVVDEVKVGENEVVEVGGGLSKGDDEKTDKMAMDEDIDDDWEGIERSELEEEFAKAVNFVDGGNGKNSGMENMGSELMMQLYGLQKIAIEGPCYEPQPMALKVYARAKWNAWQKMGSMNQEVAMEQYIKLLSDHVPNWTHHSKNDCEVGSSETKMPGDPDPIPDSSNDTGKDERTQETNRAAEGDKGEKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="77074" PGL_stop="76865"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77074" e_stop="76865"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="77074" e_stop="76865" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77074" stop="76865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77074" stop="76865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77074" stop="76865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222569" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTAATATTCCACAAGTGTCTGCAGGGAGGAGGAACTAAGAAGGAACAATACTGGTATCTCATGTAAAATAAGGACAATCTTTACTACTAAAGTTAGTTTACCTTACACAATTGTAAGCAACAAAGTAGGTCCAGAACCATAAAGGATATAATAATAATAATAACCAATGAGATTATCATTCACTTCATATAATAAAAAGTCATTGAA</gDNA_template>
            <first_frame> S  L  I  F  H  K  C  L  Q  G  G  G  T  K  K  E  Q  Y  W  Y  L  M  *  N  K  D  N  L  Y  Y  *  S  *  F  T  L  H  N  C  K  Q  Q  S  R  S  R  T  I  K  D  I  I  I  I  I  T  N  E  I  I  I  H  F  I  *  *  K  V  I  E </first_frame>
            <second_frame>  V  *  Y  S  T  S  V  C  R  E  E  E  L  R  R  N  N  T  G  I  S  C  K  I  R  T  I  F  T  T  K  V  S  L  P  Y  T  I  V  S  N  K  V  G  P  E  P  *  R  I  *  *  *  *  *  P  M  R  L  S  F  T  S  Y  N  K  K  S  L   </second_frame>
            <third_frame>   F  N  I  P  Q  V  S  A  G  R  R  N  *  E  G  T  I  L  V  S  H  V  K  *  G  Q  S  L  L  L  K  L  V  Y  L  T  Q  L  *  A  T  K  *  V  Q  N  H  K  G  Y  N  N  N  N  N  Q  *  D  Y  H  S  L  H  I  I  K  S  H  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0008K13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="82841" PGL_stop="85529"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82841" e_stop="85529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="82841" e_stop="85529" e_length="2689"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82841" stop="85529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82989" stop="83681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82989" stop="83681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83062" stop="83844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83062" stop="83641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83483" stop="84153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84483" stop="85334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84483" stop="85264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84703" stop="85301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84851" stop="85355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616472" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAGCATTACATATCATAGTCAGTTAGAGCCTATCACTCAAAACTCCAGCCCATCTCCACCACAGGAGGAAAAAAAAAAAAGCTTTTCTTTTCAGTAGAGATTTAACTTTCACCTTCGACACTAAGAACTCACATAAAGATGGAAAGACTCAGGCTCATGTTTCTTTTAATACTAATGGTAGTGTTGTTTCATGTGTTTGTTGATGCAAGACAGAACCAGAAGAAGACTTATATAATTCACATGGACAAGTTCAACATGCCTGCTGATTTTGATGATCATACTCAGTGGTATGACTCATCATTGAAGTCAGTATCCAAGAGCGCCAACATGCTTTACACCTACAACAGTGTCATCCATGGCTACTCAACACAGCTAACAGCTGATGAAGCCAAAGCACTTGCACAGCAACCGGGAATTCTCTTGGTCCACGAGGAAGTGATATACGAGCTTCACACCACTCGATCCCCTACGTTTCTGGGACTTGAAGGACGTGAAAGTAGATCATTCTTTCCTCAGACTGAAGCAAGGAGTGAGGTCATTATTGGTGTGCTGGACACAGGTGTTTGGCCTGAATCAAAAAGTTTTGATGACACTGGACTAGGTCCAGTCCCTGCGAGCTGGAAGGGTAAGTGTCAAACTGGCAAGAACTTCGACGCATCAAGCTGTAATCGGAAACTTATTGGTGCGAGGTTTTTCTCACAAGGTTATGAAGCAGCTTTTGGGGCAATCGATGAGACCATTGAATCCAAGTCACCAAGGGACGATGAAGGCCATGGCACACACACTGCAACTACAGCAGCTGGCTCGGTTGTAACCGGAGCTAGCCTCTTGGGTTATGCAACTGGTACAGCACGTGGGATGGCTTCACACGCAAGGGTGGCAGCGTACAAGGTATGTTGGACCGGAGGATGTTTTAGCAGCGACATACTGGCAGGGATGGACCAGGCTGTCATAGATGGTGTAAATGTGCTCTCACTGTCCCTTGGTGGCACAATTTCTGATTATCATAGGGACATAGTTGCAATCGGAGCATTTTCTGCAGCATCTCAAGGGATCTTTGTCTCATGCTCAGCGGGGAATGGTGGTCCAAGCTCTGGGACGCTATCCAACGTTGCACCATGGATAACTACTGTAGGTGCTGGAACCATGGACCGTGAATTTCCAGCATACATTGGCATTGGAAATGGGAAAAAACTCAATGGAGTATCACTTTACAGTGGAAAGGCATTGCCTAGTTCTGTGATGCCACTGGTGTATGCTGGAAATGTCAGCCAATCATCTAATGGAAATTTATGCACCAGTGGTAGTCTAATTCCAGAAAAAGTTGCTGGAAAAATTGTCGTCTGTGACCGGGGGATGAATGCAAGGGCACAAAAGGGTTTGGTTGTGAAGGATGCTGGTGGAATAGGGATGATTCTGGCAAACACAGACACTTACGGAGATGAGTTGGTTGCTGATGCACACCTCATACCTACAGCTGCAGTTGGTCAAACTGCGGGCAACTTGATCAAGCAGTACATAGCTTCTAACAGCAATCCAACTGCCACAATTGCATTTGGAGGAACCAAGTTGGGTGTTCAACCATCGCCAGTTGTTGCAGCTTTTAGTTCCAGAGGGCCAAACCCAATCACACCAGATGTACTCAAACCTGATTTGATAGCACCAGGTGTCAATATTCTTGCTGGCTGGACAGGGAAAGTTGGACCAACTGGCTTGCAAGAAGACACCAGGAATGTAGGCTTCAACATCATCTCTGGAACTTCCATGTCATGTCCCCATGTAAGTGGGCTAGCAGCACTACTCAAAGCTACCCATCCAGAATGGAGTCCAGCAGCTATAAGGTCAGCACTGATGACTACAAGTTATAGCACATACAAAAACGGAAAAACAATCGAGGATGTTGCAACAGGAATGTCATCTACACCATTTGATTATGGTGCTGGACATGTGAATCCAACAGCAGCTGTCAGTCCTGGTTTAGTGTATGATCTAACAGTTGATGACTATATAAACTTTCTATGTGCCTTGGACTACAGCCCGAGTATGATCAAGGTCATTGCAAAAAGAGACATCTCCTGTGACGAAAATAAGGAGTATAGAGTTGCTGATCTTAATTACCCATCTTTTTCCATTCCTATGGAAACGGCCTGGGGTGAACATGCAGATAGTAGTACCCCCACCGTGACCAGATACACAAGGACTCTAACAAATGTGGGAAACCCAGCTACATACAAGGCCTCAGTCTCTTCTGAAACACAGGACGTGAAGATTCTGGTTGAGCCACAAACACTTACTTTCAGCCGAAAGAACGAAAAGAAAACCTACACTGTGACATTCACTGCTACTTCCAAGCCATCAGGCACAACCAGCTTCGCTCGACTGGAGTGGTCAGATGGACAACACGTTGTTGCAAGCCCAATTGCTTTCAGCTGGACATGATTCTGCTAGTTCTAAGTCATTCACCACAAATGTACAAGTGCTAATAGTCCTTTTTAAATAATTACTAGTGTGCAGCAGTTACTCCTCTAATATTTCACCAACTGAACAAGTATCCTGACCTATAATTAAGAAGCCTAGGCAATTCTAGGCAATGTTGGTTGATTTGCCCAGCAAAAGGCTGGTGCTGTATTTGCCAGATATAATTATGTACTGAACCACACAATACAGGTGGATATTATTTGGCTTTAT</gDNA_template>
            <first_frame> L  A  L  H  I  I  V  S  *  S  L  S  L  K  T  P  A  H  L  H  H  R  R  K  K  K  K  A  F  L  F  S  R  D  L  T  F  T  F  D  T  K  N  S  H  K  D  G  K  T  Q  A  H  V  S  F  N  T  N  G  S  V  V  S  C  V  C  *  C  K  T  E  P  E  E  D  L  Y  N  S  H  G  Q  V  Q  H  A  C  *  F  *  *  S  Y  S  V  V  *  L  I  I  E  V  S  I  Q  E  R  Q  H  A  L  H  L  Q  Q  C  H  P  W  L  L  N  T  A  N  S  *  *  S  Q  S  T  C  T  A  T  G  N  S  L  G  P  R  G  S  D  I  R  A  S  H  H  S  I  P  Y  V  S  G  T  *  R  T  *  K  *  I  I  L  S  S  D  *  S  K  E  *  G  H  Y  W  C  A  G  H  R  C  L  A  *  I  K  K  F  *  *  H  W  T  R  S  S  P  C  E  L  E  G  *  V  S  N  W  Q  E  L  R  R  I  K  L  *  S  E  T  Y  W  C  E  V  F  L  T  R  L  *  S  S  F  W  G  N  R  *  D  H  *  I  Q  V  T  K  G  R  *  R  P  W  H  T  H  C  N  Y  S  S  W  L  G  C  N  R  S  *  P  L  G  L  C  N  W  Y  S  T  W  D  G  F  T  R  K  G  G  S  V  Q  G  M  L  D  R  R  M  F  *  Q  R  H  T  G  R  D  G  P  G  C  H  R  W  C  K  C  A  L  T  V  P  W  W  H  N  F  *  L  S  *  G  H  S  C  N  R  S  I  F  C  S  I  S  R  D  L  C  L  M  L  S  G  E  W  W  S  K  L  W  D  A  I  Q  R  C  T  M  D  N  Y  C  R  C  W  N  H  G  P  *  I  S  S  I  H  W  H  W  K  W  E  K  T  Q  W  S  I  T  L  Q  W  K  G  I  A  *  F  C  D  A  T  G  V  C  W  K  C  Q  P  I  I  *  W  K  F  M  H  Q  W  *  S  N  S  R  K  S  C  W  K  N  C  R  L  *  P  G  D  E  C  K  G  T  K  G  F  G  C  E  G  C  W  W  N  R  D  D  S  G  K  H  R  H  L  R  R  *  V  G  C  *  C  T  P  H  T  Y  S  C  S  W  S  N  C  G  Q  L  D  Q  A  V  H  S  F  *  Q  Q  S  N  C  H  N  C  I  W  R  N  Q  V  G  C  S  T  I  A  S  C  C  S  F  *  F  Q  R  A  K  P  N  H  T  R  C  T  Q  T  *  F  D  S  T  R  C  Q  Y  S  C  W  L  D  R  E  S  W  T  N  W  L  A  R  R  H  Q  E  C  R  L  Q  H  H  L  W  N  F  H  V  M  S  P  C  K  W  A  S  S  T  T  Q  S  Y  P  S  R  M  E  S  S  S  Y  K  V  S  T  D  D  Y  K  L  *  H  I  Q  K  R  K  N  N  R  G  C  C  N  R  N  V  I  Y  T  I  *  L  W  C  W  T  C  E  S  N  S  S  C  Q  S  W  F  S  V  *  S  N  S  *  *  L  Y  K  L  S  M  C  L  G  L  Q  P  E  Y  D  Q  G  H  C  K  K  R  H  L  L  *  R  K  *  G  V  *  S  C  *  S  *  L  P  I  F  F  H  S  Y  G  N  G  L  G  *  T  C  R  *  *  Y  P  H  R  D  Q  I  H  K  D  S  N  K  C  G  K  P  S  Y  I  Q  G  L  S  L  F  *  N  T  G  R  E  D  S  G  *  A  T  N  T  Y  F  Q  P  K  E  R  K  E  N  L  H  C  D  I  H  C  Y  F  Q  A  I  R  H  N  Q  L  R  S  T  G  V  V  R  W  T  T  R  C  C  K  P  N  C  F  Q  L  D  M  I  L  L  V  L  S  H  S  P  Q  M  Y  K  C  *  *  S  F  L  N  N  Y  *  C  A  A  V  T  P  L  I  F  H  Q  L  N  K  Y  P  D  L  *  L  R  S  L  G  N  S  R  Q  C  W  L  I  C  P  A  K  G  W  C  C  I  C  Q  I  *  L  C  T  E  P  H  N  T  G  G  Y  Y  L  A  L  </first_frame>
            <second_frame>  *  H  Y  I  S  *  S  V  R  A  Y  H  S  K  L  Q  P  I  S  T  T  G  G  K  K  K  K  L  F  F  S  V  E  I  *  L  S  P  S  T  L  R  T  H  I  K  M  E  R  L  R  L  M  F  L  L  I  L  M  V  V  L  F  H  V  F  V  D  A  R  Q  N  Q  K  K  T  Y  I  I  H  M  D  K  F  N  M  P  A  D  F  D  D  H  T  Q  W  Y  D  S  S  L  K  S  V  S  K  S  A  N  M  L  Y  T  Y  N  S  V  I  H  G  Y  S  T  Q  L  T  A  D  E  A  K  A  L  A  Q  Q  P  G  I  L  L  V  H  E  E  V  I  Y  E  L  H  T  T  R  S  P  T  F  L  G  L  E  G  R  E  S  R  S  F  F  P  Q  T  E  A  R  S  E  V  I  I  G  V  L  D  T  G  V  W  P  E  S  K  S  F  D  D  T  G  L  G  P  V  P  A  S  W  K  G  K  C  Q  T  G  K  N  F  D  A  S  S  C  N  R  K  L  I  G  A  R  F  F  S  Q  G  Y  E  A  A  F  G  A  I  D  E  T  I  E  S  K  S  P  R  D  D  E  G  H  G  T  H  T  A  T  T  A  A  G  S  V  V  T  G  A  S  L  L  G  Y  A  T  G  T  A  R  G  M  A  S  H  A  R  V  A  A  Y  K  V  C  W  T  G  G  C  F  S  S  D  I  L  A  G  M  D  Q  A  V  I  D  G  V  N  V  L  S  L  S  L  G  G  T  I  S  D  Y  H  R  D  I  V  A  I  G  A  F  S  A  A  S  Q  G  I  F  V  S  C  S  A  G  N  G  G  P  S  S  G  T  L  S  N  V  A  P  W  I  T  T  V  G  A  G  T  M  D  R  E  F  P  A  Y  I  G  I  G  N  G  K  K  L  N  G  V  S  L  Y  S  G  K  A  L  P  S  S  V  M  P  L  V  Y  A  G  N  V  S  Q  S  S  N  G  N  L  C  T  S  G  S  L  I  P  E  K  V  A  G  K  I  V  V  C  D  R  G  M  N  A  R  A  Q  K  G  L  V  V  K  D  A  G  G  I  G  M  I  L  A  N  T  D  T  Y  G  D  E  L  V  A  D  A  H  L  I  P  T  A  A  V  G  Q  T  A  G  N  L  I  K  Q  Y  I  A  S  N  S  N  P  T  A  T  I  A  F  G  G  T  K  L  G  V  Q  P  S  P  V  V  A  A  F  S  S  R  G  P  N  P  I  T  P  D  V  L  K  P  D  L  I  A  P  G  V  N  I  L  A  G  W  T  G  K  V  G  P  T  G  L  Q  E  D  T  R  N  V  G  F  N  I  I  S  G  T  S  M  S  C  P  H  V  S  G  L  A  A  L  L  K  A  T  H  P  E  W  S  P  A  A  I  R  S  A  L  M  T  T  S  Y  S  T  Y  K  N  G  K  T  I  E  D  V  A  T  G  M  S  S  T  P  F  D  Y  G  A  G  H  V  N  P  T  A  A  V  S  P  G  L  V  Y  D  L  T  V  D  D  Y  I  N  F  L  C  A  L  D  Y  S  P  S  M  I  K  V  I  A  K  R  D  I  S  C  D  E  N  K  E  Y  R  V  A  D  L  N  Y  P  S  F  S  I  P  M  E  T  A  W  G  E  H  A  D  S  S  T  P  T  V  T  R  Y  T  R  T  L  T  N  V  G  N  P  A  T  Y  K  A  S  V  S  S  E  T  Q  D  V  K  I  L  V  E  P  Q  T  L  T  F  S  R  K  N  E  K  K  T  Y  T  V  T  F  T  A  T  S  K  P  S  G  T  T  S  F  A  R  L  E  W  S  D  G  Q  H  V  V  A  S  P  I  A  F  S  W  T  *  F  C  *  F  *  V  I  H  H  K  C  T  S  A  N  S  P  F  *  I  I  T  S  V  Q  Q  L  L  L  *  Y  F  T  N  *  T  S  I  L  T  Y  N  *  E  A  *  A  I  L  G  N  V  G  *  F  A  Q  Q  K  A  G  A  V  F  A  R  Y  N  Y  V  L  N  H  T  I  Q  V  D  I  I  W  L  Y </second_frame>
            <third_frame>   S  I  T  Y  H  S  Q  L  E  P  I  T  Q  N  S  S  P  S  P  P  Q  E  E  K  K  K  S  F  S  F  Q  *  R  F  N  F  H  L  R  H  *  E  L  T  *  R  W  K  D  S  G  S  C  F  F  *  Y  *  W  *  C  C  F  M  C  L  L  M  Q  D  R  T  R  R  R  L  I  *  F  T  W  T  S  S  T  C  L  L  I  L  M  I  I  L  S  G  M  T  H  H  *  S  Q  Y  P  R  A  P  T  C  F  T  P  T  T  V  S  S  M  A  T  Q  H  S  *  Q  L  M  K  P  K  H  L  H  S  N  R  E  F  S  W  S  T  R  K  *  Y  T  S  F  T  P  L  D  P  L  R  F  W  D  L  K  D  V  K  V  D  H  S  F  L  R  L  K  Q  G  V  R  S  L  L  V  C  W  T  Q  V  F  G  L  N  Q  K  V  L  M  T  L  D  *  V  Q  S  L  R  A  G  R  V  S  V  K  L  A  R  T  S  T  H  Q  A  V  I  G  N  L  L  V  R  G  F  S  H  K  V  M  K  Q  L  L  G  Q  S  M  R  P  L  N  P  S  H  Q  G  T  M  K  A  M  A  H  T  L  Q  L  Q  Q  L  A  R  L  *  P  E  L  A  S  W  V  M  Q  L  V  Q  H  V  G  W  L  H  T  Q  G  W  Q  R  T  R  Y  V  G  P  E  D  V  L  A  A  T  Y  W  Q  G  W  T  R  L  S  *  M  V  *  M  C  S  H  C  P  L  V  A  Q  F  L  I  I  I  G  T  *  L  Q  S  E  H  F  L  Q  H  L  K  G  S  L  S  H  A  Q  R  G  M  V  V  Q  A  L  G  R  Y  P  T  L  H  H  G  *  L  L  *  V  L  E  P  W  T  V  N  F  Q  H  T  L  A  L  E  M  G  K  N  S  M  E  Y  H  F  T  V  E  R  H  C  L  V  L  *  C  H  W  C  M  L  E  M  S  A  N  H  L  M  E  I  Y  A  P  V  V  V  *  F  Q  K  K  L  L  E  K  L  S  S  V  T  G  G  *  M  Q  G  H  K  R  V  W  L  *  R  M  L  V  E  *  G  *  F  W  Q  T  Q  T  L  T  E  M  S  W  L  L  M  H  T  S  Y  L  Q  L  Q  L  V  K  L  R  A  T  *  S  S  S  T  *  L  L  T  A  I  Q  L  P  Q  L  H  L  E  E  P  S  W  V  F  N  H  R  Q  L  L  Q  L  L  V  P  E  G  Q  T  Q  S  H  Q  M  Y  S  N  L  I  *  *  H  Q  V  S  I  F  L  L  A  G  Q  G  K  L  D  Q  L  A  C  K  K  T  P  G  M  *  A  S  T  S  S  L  E  L  P  C  H  V  P  M  *  V  G  *  Q  H  Y  S  K  L  P  I  Q  N  G  V  Q  Q  L  *  G  Q  H  *  *  L  Q  V  I  A  H  T  K  T  E  K  Q  S  R  M  L  Q  Q  E  C  H  L  H  H  L  I  M  V  L  D  M  *  I  Q  Q  Q  L  S  V  L  V  *  C  M  I  *  Q  L  M  T  I  *  T  F  Y  V  P  W  T  T  A  R  V  *  S  R  S  L  Q  K  E  T  S  P  V  T  K  I  R  S  I  E  L  L  I  L  I  T  H  L  F  P  F  L  W  K  R  P  G  V  N  M  Q  I  V  V  P  P  P  *  P  D  T  Q  G  L  *  Q  M  W  E  T  Q  L  H  T  R  P  Q  S  L  L  K  H  R  T  *  R  F  W  L  S  H  K  H  L  L  S  A  E  R  T  K  R  K  P  T  L  *  H  S  L  L  L  P  S  H  Q  A  Q  P  A  S  L  D  W  S  G  Q  M  D  N  T  L  L  Q  A  Q  L  L  S  A  G  H  D  S  A  S  S  K  S  F  T  T  N  V  Q  V  L  I  V  L  F  K  *  L  L  V  C  S  S  Y  S  S  N  I  S  P  T  E  Q  V  S  *  P  I  I  K  K  P  R  Q  F  *  A  M  L  V  D  L  P  S  K  R  L  V  L  Y  L  P  D  I  I  M  Y  *  T  T  Q  Y  R  W  I  L  F  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82947" stop="85280"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2331</number_coding_nucleotides>
                  <number_encoded_amino_acids>777</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSPSTLRTHIKMERLRLMFLLILMVVLFHVFVDARQNQKKTYIIHMDKFNMPADFDDHTQWYDSSLKSVSKSANMLYTYNSVIHGYSTQLTADEAKALAQQPGILLVHEEVIYELHTTRSPTFLGLEGRESRSFFPQTEARSEVIIGVLDTGVWPESKSFDDTGLGPVPASWKGKCQTGKNFDASSCNRKLIGARFFSQGYEAAFGAIDETIESKSPRDDEGHGTHTATTAAGSVVTGASLLGYATGTARGMASHARVAAYKVCWTGGCFSSDILAGMDQAVIDGVNVLSLSLGGTISDYHRDIVAIGAFSAASQGIFVSCSAGNGGPSSGTLSNVAPWITTVGAGTMDREFPAYIGIGNGKKLNGVSLYSGKALPSSVMPLVYAGNVSQSSNGNLCTSGSLIPEKVAGKIVVCDRGMNARAQKGLVVKDAGGIGMILANTDTYGDELVADAHLIPTAAVGQTAGNLIKQYIASNSNPTATIAFGGTKLGVQPSPVVAAFSSRGPNPITPDVLKPDLIAPGVNILAGWTGKVGPTGLQEDTRNVGFNIISGTSMSCPHVSGLAALLKATHPEWSPAAIRSALMTTSYSTYKNGKTIEDVATGMSSTPFDYGAGHVNPTAAVSPGLVYDLTVDDYINFLCALDYSPSMIKVIAKRDISCDENKEYRVADLNYPSFSIPMETAWGEHADSSTPTVTRYTRTLTNVGNPATYKASVSSETQDVKILVEPQTLTFSRKNEKKTYTVTFTATSKPSGTTSFARLEWSDGQHVVASPIAFSWT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="85516" PGL_stop="84724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85516" e_stop="84724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="85516" e_stop="84724" e_length="793"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85516" stop="84930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85500" stop="84894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85471" stop="84724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATCCACCTGTATTGTGTGGTTCAGTACATAATTATATCTGGCAAATACAGCACCAGCCTTTTGCTGGGCAAATCAACCAACATTGCCTAGAATTGCCTAGGCTTCTTAATTATAGGTCAGGATACTTGTTCAGTTGGTGAAATATTAGAGGAGTAACTGCTGCACACTAGTAATTATTTAAAAAGGACTATTAGCACTTGTACATTTGTGGTGAATGACTTAGAACTAGCAGAATCATGTCCAGCTGAAAGCAATTGGGCTTGCAACAACGTGTTGTCCATCTGACCACTCCAGTCGAGCGAAGCTGGTTGTGCCTGATGGCTTGGAAGTAGCAGTGAATGTCACAGTGTAGGTTTTCTTTTCGTTCTTTCGGCTGAAAGTAAGTGTTTGTGGCTCAACCAGAATCTTCACGTCCTGTGTTTCAGAAGAGACTGAGGCCTTGTATGTAGCTGGGTTTCCCACATTTGTTAGAGTCCTTGTGTATCTGGTCACGGTGGGGGTACTACTATCTGCATGTTCACCCCAGGCCGTTTCCATAGGAATGGAAAAAGATGGGTAATTAAGATCAGCAACTCTATACTCCTTATTTTCGTCACAGGAGATGTCTCTTTTTGCAATGACCTTGATCATACTCGGGCTGTAGTCCAAGGCACATAGAAAGTTTATATAGTCATCAACTGTTAGATCATACACTAAACCAGGACTGACAGCTGCTGTTGGATTCACATGTCCAGCACCATAATCAAATGGTGTAGATGACATTCCTGTTGCAACATCCTCGATTGTTTTTC</gDNA_template>
            <first_frame> I  S  T  C  I  V  W  F  S  T  *  L  Y  L  A  N  T  A  P  A  F  C  W  A  N  Q  P  T  L  P  R  I  A  *  A  S  *  L  *  V  R  I  L  V  Q  L  V  K  Y  *  R  S  N  C  C  T  L  V  I  I  *  K  G  L  L  A  L  V  H  L  W  *  M  T  *  N  *  Q  N  H  V  Q  L  K  A  I  G  L  A  T  T  C  C  P  S  D  H  S  S  R  A  K  L  V  V  P  D  G  L  E  V  A  V  N  V  T  V  *  V  F  F  S  F  F  R  L  K  V  S  V  C  G  S  T  R  I  F  T  S  C  V  S  E  E  T  E  A  L  Y  V  A  G  F  P  T  F  V  R  V  L  V  Y  L  V  T  V  G  V  L  L  S  A  C  S  P  Q  A  V  S  I  G  M  E  K  D  G  *  L  R  S  A  T  L  Y  S  L  F  S  S  Q  E  M  S  L  F  A  M  T  L  I  I  L  G  L  *  S  K  A  H  R  K  F  I  *  S  S  T  V  R  S  Y  T  K  P  G  L  T  A  A  V  G  F  T  C  P  A  P  *  S  N  G  V  D  D  I  P  V  A  T  S  S  I  V  F  </first_frame>
            <second_frame>  Y  P  P  V  L  C  G  S  V  H  N  Y  I  W  Q  I  Q  H  Q  P  F  A  G  Q  I  N  Q  H  C  L  E  L  P  R  L  L  N  Y  R  S  G  Y  L  F  S  W  *  N  I  R  G  V  T  A  A  H  *  *  L  F  K  K  D  Y  *  H  L  Y  I  C  G  E  *  L  R  T  S  R  I  M  S  S  *  K  Q  L  G  L  Q  Q  R  V  V  H  L  T  T  P  V  E  R  S  W  L  C  L  M  A  W  K  *  Q  *  M  S  Q  C  R  F  S  F  R  S  F  G  *  K  *  V  F  V  A  Q  P  E  S  S  R  P  V  F  Q  K  R  L  R  P  C  M  *  L  G  F  P  H  L  L  E  S  L  C  I  W  S  R  W  G  Y  Y  Y  L  H  V  H  P  R  P  F  P  *  E  W  K  K  M  G  N  *  D  Q  Q  L  Y  T  P  Y  F  R  H  R  R  C  L  F  L  Q  *  P  *  S  Y  S  G  C  S  P  R  H  I  E  S  L  Y  S  H  Q  L  L  D  H  T  L  N  Q  D  *  Q  L  L  L  D  S  H  V  Q  H  H  N  Q  M  V  *  M  T  F  L  L  Q  H  P  R  L  F  F </second_frame>
            <third_frame>   I  H  L  Y  C  V  V  Q  Y  I  I  I  S  G  K  Y  S  T  S  L  L  L  G  K  S  T  N  I  A  *  N  C  L  G  F  L  I  I  G  Q  D  T  C  S  V  G  E  I  L  E  E  *  L  L  H  T  S  N  Y  L  K  R  T  I  S  T  C  T  F  V  V  N  D  L  E  L  A  E  S  C  P  A  E  S  N  W  A  C  N  N  V  L  S  I  *  P  L  Q  S  S  E  A  G  C  A  *  W  L  G  S  S  S  E  C  H  S  V  G  F  L  F  V  L  S  A  E  S  K  C  L  W  L  N  Q  N  L  H  V  L  C  F  R  R  D  *  G  L  V  C  S  W  V  S  H  I  C  *  S  P  C  V  S  G  H  G  G  G  T  T  I  C  M  F  T  P  G  R  F  H  R  N  G  K  R  W  V  I  K  I  S  N  S  I  L  L  I  F  V  T  G  D  V  S  F  C  N  D  L  D  H  T  R  A  V  V  Q  G  T  *  K  V  Y  I  V  I  N  C  *  I  I  H  *  T  R  T  D  S  C  C  W  I  H  M  S  S  T  I  I  K  W  C  R  *  H  S  C  C  N  I  L  D  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85162" stop="84956"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFFSFFRLKVSVCGSTRIFTSCVSEETEALYVAGFPTFVRVLVYLVTVGVLLSACSPQAVSIGMEKDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="89477" PGL_stop="86373"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89477" e_stop="89350"/>
            <exon e_start="88226" e_stop="87831"/>
            <exon e_start="86961" e_stop="86522"/>
            <exon e_start="86401" e_stop="86373"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.984"/>
          <exon-only e_score="0.655"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89477" e_stop="89350" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="89349" i_stop="88227" i_length="1123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88226" e_stop="87831" e_length="396"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="87830" i_stop="86962" i_length="869"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="86961" e_stop="86522" e_length="440"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86521" i_stop="86402" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="0.655">
            <gDNA_exon_boundary e_start="86401" e_stop="86373" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89477" stop="89350"/>
              <exon start="88226" stop="87831"/>
              <exon start="86961" stop="86759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89477" stop="89350"/>
              <exon start="88226" stop="87831"/>
              <exon start="86961" stop="86929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88114" stop="87926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88025" stop="87831"/>
              <exon start="86961" stop="86522"/>
              <exon start="86401" stop="86373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369188" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGGTCGTAAAGGCTCTCCTTGATGCTAGTGCCCCATGGAATGCCCTGACCCCTTCCAATGTCTCCGCCGGCGACTTCGCCATGGATGCTGGTCATCAAGAGGCTTTTGACGTTCTTCTCAATACCG : CAATCCAGGCAGAATTGATCCTTGGAACAATTGCAAGGAAGGACAATGCTAAGGGGAACTCAGATGGGAACTATTTAGATGATAGAGTCACTTTTAGTGAAGATAAAATTATGGACTCTGATAGTAAGGCTATTATGATGGCTTGGGAGAAGCCATTGATGGAAGCTCATGCGAAAGCTGTCTGCTCAAATGGTGGTCACATACTGAACATTGGATTTGGGATGGGCCTTGTAGATACAGCCATACAACAATATTCACCTTTATCACACACTATTATTGAAGCTCATCCAGAGGTCTATGATCGTATGATGCGCGCAGGTTGGGGTGAGAAGGAGAATGTGAAAATCATATTTGGTCGGTGGCAAGATGTCATTTCTAAACTTGAAACCTATGATG : GAATATTTTTTGATACTTATGGGGAGTATTATGAAGATATGCGGGAATTTCATCAACATCTTCCTAGATTATTGAAGCCAGGTGGTATATATTCATTTTTTAATGGTCTATGTGGAGGTAATCCCTTCTTTCATATCGTATACTGTCAGCTAGTCTCTCTAGAACTTGAGAGCTTGGGATATTCTACGCAGCTGATACCATTACCAGTGAAGGATTGTTTAGGTGAATCTGTGTGGGAGGGTGTTAAACAGAAGTACTGGCAGTTAGATACGTATTACCTTCCTGTTTGTCAGTCTATGAGCGAATCAGAATGATATTATTGGACCACTGATAATGTGGCATCAGATGAAAAAGCCTCCTAGGATCTTCTTCTTTTCTTGTTGTGTATTCATTTTGTAACGAGTTTGGTAGTATTTTCACATCTTCGATTTTTAGATATT : TGCCAAGAAAAAAACCCAAAGAAAAGAGA</gDNA_template>
            <first_frame> R  G  R  K  G  S  P  *  C  *  C  P  M  E  C  P  D  P  F  Q  C  L  R  R  R  L  R  H  G  C  W  S  S  R  G  F  *  R  S  S  Q  Y  R :   N  P  G  R  I  D  P  W  N  N  C  K  E  G  Q  C  *  G  E  L  R  W  E  L  F  R  *  *  S  H  F  *  *  R  *  N  Y  G  L  *  *  *  G  Y  Y  D  G  L  G  E  A  I  D  G  S  S  C  E  S  C  L  L  K  W  W  S  H  T  E  H  W  I  W  D  G  P  C  R  Y  S  H  T  T  I  F  T  F  I  T  H  Y  Y  *  S  S  S  R  G  L  *  S  Y  D  A  R  R  L  G  *  E  G  E  C  E  N  H  I  W  S  V  A  R  C  H  F  *  T  *  N  L  *  W :   N  I  F  *  Y  L  W  G  V  L  *  R  Y  A  G  I  S  S  T  S  S  *  I  I  E  A  R  W  Y  I  F  I  F  *  W  S  M  W  R  *  S  L  L  S  Y  R  I  L  S  A  S  L  S  R  T  *  E  L  G  I  F  Y  A  A  D  T  I  T  S  E  G  L  F  R  *  I  C  V  G  G  C  *  T  E  V  L  A  V  R  Y  V  L  P  S  C  L  S  V  Y  E  R  I  R  M  I  L  L  D  H  *  *  C  G  I  R  *  K  S  L  L  G  S  S  S  F  L  V  V  Y  S  F  C  N  E  F  G  S  I  F  T  S  S  I  F  R  Y   : L  P  R  K  K  P  K  E  K  R </first_frame>
            <second_frame>  E  V  V  K  A  L  L  D  A  S  A  P  W  N  A  L  T  P  S  N  V  S  A  G  D  F  A  M  D  A  G  H  Q  E  A  F  D  V  L  L  N  T   : A  I  Q  A  E  L  I  L  G  T  I  A  R  K  D  N  A  K  G  N  S  D  G  N  Y  L  D  D  R  V  T  F  S  E  D  K  I  M  D  S  D  S  K  A  I  M  M  A  W  E  K  P  L  M  E  A  H  A  K  A  V  C  S  N  G  G  H  I  L  N  I  G  F  G  M  G  L  V  D  T  A  I  Q  Q  Y  S  P  L  S  H  T  I  I  E  A  H  P  E  V  Y  D  R  M  M  R  A  G  W  G  E  K  E  N  V  K  I  I  F  G  R  W  Q  D  V  I  S  K  L  E  T  Y  D   : G  I  F  F  D  T  Y  G  E  Y  Y  E  D  M  R  E  F  H  Q  H  L  P  R  L  L  K  P  G  G  I  Y  S  F  F  N  G  L  C  G  G  N  P  F  F  H  I  V  Y  C  Q  L  V  S  L  E  L  E  S  L  G  Y  S  T  Q  L  I  P  L  P  V  K  D  C  L  G  E  S  V  W  E  G  V  K  Q  K  Y  W  Q  L  D  T  Y  Y  L  P  V  C  Q  S  M  S  E  S  E  *  Y  Y  W  T  T  D  N  V  A  S  D  E  K  A  S  *  D  L  L  L  F  L  L  C  I  H  F  V  T  S  L  V  V  F  S  H  L  R  F  L  D  I  :  C  Q  E  K  N  P  K  K  R   </second_frame>
            <third_frame>   R  S  *  R  L  S  L  M  L  V  P  H  G  M  P  *  P  L  P  M  S  P  P  A  T  S  P  W  M  L  V  I  K  R  L  L  T  F  F  S  I  P  :  Q  S  R  Q  N  *  S  L  E  Q  L  Q  G  R  T  M  L  R  G  T  Q  M  G  T  I  *  M  I  E  S  L  L  V  K  I  K  L  W  T  L  I  V  R  L  L  *  W  L  G  R  S  H  *  W  K  L  M  R  K  L  S  A  Q  M  V  V  T  Y  *  T  L  D  L  G  W  A  L  *  I  Q  P  Y  N  N  I  H  L  Y  H  T  L  L  L  K  L  I  Q  R  S  M  I  V  *  C  A  Q  V  G  V  R  R  R  M  *  K  S  Y  L  V  G  G  K  M  S  F  L  N  L  K  P  M  M  :  E  Y  F  L  I  L  M  G  S  I  M  K  I  C  G  N  F  I  N  I  F  L  D  Y  *  S  Q  V  V  Y  I  H  F  L  M  V  Y  V  E  V  I  P  S  F  I  S  Y  T  V  S  *  S  L  *  N  L  R  A  W  D  I  L  R  S  *  Y  H  Y  Q  *  R  I  V  *  V  N  L  C  G  R  V  L  N  R  S  T  G  S  *  I  R  I  T  F  L  F  V  S  L  *  A  N  Q  N  D  I  I  G  P  L  I  M  W  H  Q  M  K  K  P  P  R  I  F  F  F  S  C  C  V  F  I  L  *  R  V  W  *  Y  F  H  I  F  D  F  *  I  F :   A  K  K  K  T  Q  R  K  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89476" stop="89350"/>
                    <exon start="88226" stop="87831"/>
                    <exon start="86961" stop="86648"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVVKALLDASAPWNALTPSNVSAGDFAMDAGHQEAFDVLLNTAIQAELILGTIARKDNAKGNSDGNYLDDRVTFSEDKIMDSDSKAIMMAWEKPLMEAHAKAVCSNGGHILNIGFGMGLVDTAIQQYSPLSHTIIEAHPEVYDRMMRAGWGEKENVKIIFGRWQDVISKLETYDGIFFDTYGEYYEDMREFHQHLPRLLKPGGIYSFFNGLCGGNPFFHIVYCQLVSLELESLGYSTQLIPLPVKDCLGESVWEGVKQKYWQLDTYYLPVCQSMSESE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="95466" PGL_stop="101808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95466" e_stop="96053"/>
            <exon e_start="96567" e_stop="96750"/>
            <exon e_start="101386" e_stop="101528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="0.993"/>
          <exon-intron don_prob="0.988" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="95466" e_stop="96053" e_length="588"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="96054" i_stop="96566" i_length="513"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96567" e_stop="96750" e_length="184"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.983">
            <gDNA_intron_boundary i_start="96751" i_stop="101385" i_length="4635"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101386" e_stop="101528" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95466" stop="95915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95882" stop="96053"/>
              <exon start="96567" stop="96750"/>
              <exon start="101386" stop="101528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200951" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACAATAGTAAATCTGCTGACGATGCAAGAGATAGACACCATGAATTTTTTATTGCAATCGACAATCAAATTAGGAAAGTTGAGAAATCTCTTAATGAATCAGCTGTTTCACAAGGCAAACCACCACTTCCATGGGTGCGGTTGGATGAGGGAGAAGTCGATGAACTTGCTGCATTTCTCTCTGGCCCATCCACCTCTTCTGCAGGCATAACCCATGCAAAAGTACATGGAGTGGAGCTGCAAGTTCCCAAGTGGGAAGAGAATGTAAATCAATCACTTCTTGAGTGTTCCCAGAATCCTCCTCATTCGGAGGAAGGTGTTCTAGGTGAGGCCATAGACGAGAAGTTTTTAGGCCATCGGAGAACAGCAAGTGCTAGTGCTGACATTGGTGCATGGCAGATTGCACTTGGCAATGATATTTCCATCAAAGAACCTGCATCCCCTCCTCGCAGAATACCAAGTTACCAGGGATTGTTGAATGCCGTGGAATCTGTTAAGGAGTTAAAATGGCCCAAGAATGGTTACCGGAAGTTGAAGTTCAATCAAGAAGCTGACAATACATTGCCGCGTTCTCAGCCACCAACAAGG : AACACAAACACATGCTATGATAGGAATAAGAGTTGCCTTGATGGTTGTGATGATTGTTATGATAAGCAACTGTATGGTTGGTATGGTGCCGTTCAGCGCCAGCTGCAAAGATCTCAGTATTACATGCAATATCGTCGACCTGTTCGAATAGTTTTCTCAGTGTTTCTTCTCATTTTCCTGATTG : TTCTAGTGGCAGTCCGGACAATCTGAGAGATGAACCTTTATTCTTGTAATTGATGAACTTGCAATGTCGAGACGGTCAGAGGAAAAAGGGCCTCAGTTTTGGTATTACCTTATAGAGGAAAGATGTAAATTACATGTAATTTT</gDNA_template>
            <first_frame> Y  N  S  K  S  A  D  D  A  R  D  R  H  H  E  F  F  I  A  I  D  N  Q  I  R  K  V  E  K  S  L  N  E  S  A  V  S  Q  G  K  P  P  L  P  W  V  R  L  D  E  G  E  V  D  E  L  A  A  F  L  S  G  P  S  T  S  S  A  G  I  T  H  A  K  V  H  G  V  E  L  Q  V  P  K  W  E  E  N  V  N  Q  S  L  L  E  C  S  Q  N  P  P  H  S  E  E  G  V  L  G  E  A  I  D  E  K  F  L  G  H  R  R  T  A  S  A  S  A  D  I  G  A  W  Q  I  A  L  G  N  D  I  S  I  K  E  P  A  S  P  P  R  R  I  P  S  Y  Q  G  L  L  N  A  V  E  S  V  K  E  L  K  W  P  K  N  G  Y  R  K  L  K  F  N  Q  E  A  D  N  T  L  P  R  S  Q  P  P  T  R  :  N  T  N  T  C  Y  D  R  N  K  S  C  L  D  G  C  D  D  C  Y  D  K  Q  L  Y  G  W  Y  G  A  V  Q  R  Q  L  Q  R  S  Q  Y  Y  M  Q  Y  R  R  P  V  R  I  V  F  S  V  F  L  L  I  F  L  I   : V  L  V  A  V  R  T  I  *  E  M  N  L  Y  S  C  N  *  *  T  C  N  V  E  T  V  R  G  K  R  A  S  V  L  V  L  P  Y  R  G  K  M  *  I  T  C  N  F </first_frame>
            <second_frame>  T  I  V  N  L  L  T  M  Q  E  I  D  T  M  N  F  L  L  Q  S  T  I  K  L  G  K  L  R  N  L  L  M  N  Q  L  F  H  K  A  N  H  H  F  H  G  C  G  W  M  R  E  K  S  M  N  L  L  H  F  S  L  A  H  P  P  L  L  Q  A  *  P  M  Q  K  Y  M  E  W  S  C  K  F  P  S  G  K  R  M  *  I  N  H  F  L  S  V  P  R  I  L  L  I  R  R  K  V  F  *  V  R  P  *  T  R  S  F  *  A  I  G  E  Q  Q  V  L  V  L  T  L  V  H  G  R  L  H  L  A  M  I  F  P  S  K  N  L  H  P  L  L  A  E  Y  Q  V  T  R  D  C  *  M  P  W  N  L  L  R  S  *  N  G  P  R  M  V  T  G  S  *  S  S  I  K  K  L  T  I  H  C  R  V  L  S  H  Q  Q  G :   T  Q  T  H  A  M  I  G  I  R  V  A  L  M  V  V  M  I  V  M  I  S  N  C  M  V  G  M  V  P  F  S  A  S  C  K  D  L  S  I  T  C  N  I  V  D  L  F  E  *  F  S  Q  C  F  F  S  F  S  *  L  :  F  *  W  Q  S  G  Q  S  E  R  *  T  F  I  L  V  I  D  E  L  A  M  S  R  R  S  E  E  K  G  P  Q  F  W  Y  Y  L  I  E  E  R  C  K  L  H  V  I   </second_frame>
            <third_frame>   Q  *  *  I  C  *  R  C  K  R  *  T  P  *  I  F  Y  C  N  R  Q  S  N  *  E  S  *  E  I  S  *  *  I  S  C  F  T  R  Q  T  T  T  S  M  G  A  V  G  *  G  R  S  R  *  T  C  C  I  S  L  W  P  I  H  L  F  C  R  H  N  P  C  K  S  T  W  S  G  A  A  S  S  Q  V  G  R  E  C  K  S  I  T  S  *  V  F  P  E  S  S  S  F  G  G  R  C  S  R  *  G  H  R  R  E  V  F  R  P  S  E  N  S  K  C  *  C  *  H  W  C  M  A  D  C  T  W  Q  *  Y  F  H  Q  R  T  C  I  P  S  S  Q  N  T  K  L  P  G  I  V  E  C  R  G  I  C  *  G  V  K  M  A  Q  E  W  L  P  E  V  E  V  Q  S  R  S  *  Q  Y  I  A  A  F  S  A  T  N  K   : E  H  K  H  M  L  *  *  E  *  E  L  P  *  W  L  *  *  L  L  *  *  A  T  V  W  L  V  W  C  R  S  A  P  A  A  K  I  S  V  L  H  A  I  S  S  T  C  S  N  S  F  L  S  V  S  S  H  F  P  D  C :   S  S  G  S  P  D  N  L  R  D  E  P  L  F  L  *  L  M  N  L  Q  C  R  D  G  Q  R  K  K  G  L  S  F  G  I  T  L  *  R  K  D  V  N  Y  M  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95466" stop="96053"/>
                    <exon start="96567" stop="96750"/>
                    <exon start="101386" stop="101411"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNSKSADDARDRHHEFFIAIDNQIRKVEKSLNESAVSQGKPPLPWVRLDEGEVDELAAFLSGPSTSSAGITHAKVHGVELQVPKWEENVNQSLLECSQNPPHSEEGVLGEAIDEKFLGHRRTASASADIGAWQIALGNDISIKEPASPPRRIPSYQGLLNAVESVKELKWPKNGYRKLKFNQEADNTLPRSQPPTRNTNTCYDRNKSCLDGCDDCYDKQLYGWYGAVQRQLQRSQYYMQYRRPVRIVFSVFLLIFLIVLVAVRTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96567" e_stop="96750"/>
            <exon e_start="99720" e_stop="99792"/>
            <exon e_start="101386" e_stop="101808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96567" e_stop="96750" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.964">
            <gDNA_intron_boundary i_start="96751" i_stop="99719" i_length="2969"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99720" e_stop="99792" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.914" acc_prob="0.983">
            <gDNA_intron_boundary i_start="99793" i_stop="101385" i_length="1593"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="101386" e_stop="101808" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96567" stop="96750"/>
              <exon start="99720" stop="99792"/>
              <exon start="101386" stop="101808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99720" stop="99792"/>
              <exon start="101386" stop="101793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286705" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACACAAACACATGCTATGATAGGAATAAGAGTTGCCTTGATGGTTGTGATGATTGTTATGATAAGCAACTGTATGGTTGGTATGGTGCCGTTCAGCGCCAGCTGCAAAGATCTCAGTATTACATGCAATATCGTCGACCTGTTCGAATAGTTTTCTCAGTGTTTCTTCTCATTTTCCTGATTG : CATCTCTCCAGCAAGAATGATTGGAGACTTCAACAAATGATTCAGGTTCATGTGAAGATTGAGCTGAGATGAG : TTCTAGTGGCAGTCCGGACAATCTGAGAGATGAACCTTTATTCTTGTAATTGATGAACTTGCAATGTCGAGACGGTCAGAGGAAAAAGGGCCTCAGTTTTGGTATTACCTTATAGAGGAAAGATGTAAATTACATGTAATTTTGTTCAGGTGATGCAAAGCTGGTGCTATTATCTCAACATACTTTGTAGTAATACCTTATCACCATTAGTGGAGACCAAATTATGTTGTATTATGATATTCCGTCCATCAGAAACAACTTCTCTACCTCTAAGGTAAAGGTAAGGTGTGCGTCTCCTCCAAACCCCATTCTGTAGGATTACACTGGCTATGTTGTTGTATACAGAAATGAAAGAGATGATTAGGTCTATTTGACTTGCTAAATCATGTATATTATTGTATTACTGTAATTCACTTCTGGGTT</gDNA_template>
            <first_frame> N  T  N  T  C  Y  D  R  N  K  S  C  L  D  G  C  D  D  C  Y  D  K  Q  L  Y  G  W  Y  G  A  V  Q  R  Q  L  Q  R  S  Q  Y  Y  M  Q  Y  R  R  P  V  R  I  V  F  S  V  F  L  L  I  F  L  I   : A  S  L  Q  Q  E  *  L  E  T  S  T  N  D  S  G  S  C  E  D  *  A  E  M  S :   S  S  G  S  P  D  N  L  R  D  E  P  L  F  L  *  L  M  N  L  Q  C  R  D  G  Q  R  K  K  G  L  S  F  G  I  T  L  *  R  K  D  V  N  Y  M  *  F  C  S  G  D  A  K  L  V  L  L  S  Q  H  T  L  *  *  Y  L  I  T  I  S  G  D  Q  I  M  L  Y  Y  D  I  P  S  I  R  N  N  F  S  T  S  K  V  K  V  R  C  A  S  P  P  N  P  I  L  *  D  Y  T  G  Y  V  V  V  Y  R  N  E  R  D  D  *  V  Y  L  T  C  *  I  M  Y  I  I  V  L  L  *  F  T  S  G   </first_frame>
            <second_frame>  T  Q  T  H  A  M  I  G  I  R  V  A  L  M  V  V  M  I  V  M  I  S  N  C  M  V  G  M  V  P  F  S  A  S  C  K  D  L  S  I  T  C  N  I  V  D  L  F  E  *  F  S  Q  C  F  F  S  F  S  *  L  :  H  L  S  S  K  N  D  W  R  L  Q  Q  M  I  Q  V  H  V  K  I  E  L  R  *   : V  L  V  A  V  R  T  I  *  E  M  N  L  Y  S  C  N  *  *  T  C  N  V  E  T  V  R  G  K  R  A  S  V  L  V  L  P  Y  R  G  K  M  *  I  T  C  N  F  V  Q  V  M  Q  S  W  C  Y  Y  L  N  I  L  C  S  N  T  L  S  P  L  V  E  T  K  L  C  C  I  M  I  F  R  P  S  E  T  T  S  L  P  L  R  *  R  *  G  V  R  L  L  Q  T  P  F  C  R  I  T  L  A  M  L  L  Y  T  E  M  K  E  M  I  R  S  I  *  L  A  K  S  C  I  L  L  Y  Y  C  N  S  L  L  G  </second_frame>
            <third_frame>   H  K  H  M  L  *  *  E  *  E  L  P  *  W  L  *  *  L  L  *  *  A  T  V  W  L  V  W  C  R  S  A  P  A  A  K  I  S  V  L  H  A  I  S  S  T  C  S  N  S  F  L  S  V  S  S  H  F  P  D  C :   I  S  P  A  R  M  I  G  D  F  N  K  *  F  R  F  M  *  R  L  S  *  D  E  :  F  *  W  Q  S  G  Q  S  E  R  *  T  F  I  L  V  I  D  E  L  A  M  S  R  R  S  E  E  K  G  P  Q  F  W  Y  Y  L  I  E  E  R  C  K  L  H  V  I  L  F  R  *  C  K  A  G  A  I  I  S  T  Y  F  V  V  I  P  Y  H  H  *  W  R  P  N  Y  V  V  L  *  Y  S  V  H  Q  K  Q  L  L  Y  L  *  G  K  G  K  V  C  V  S  S  K  P  H  S  V  G  L  H  W  L  C  C  C  I  Q  K  *  K  R  *  L  G  L  F  D  L  L  N  H  V  Y  Y  C  I  T  V  I  H  F  W  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96567" stop="96750"/>
                    <exon start="99720" stop="99739"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTNTCYDRNKSCLDGCDDCYDKQLYGWYGAVQRQLQRSQYYMQYRRPVRIVFSVFLLIFLIASLQQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="95978" e_stop="96053"/>
            <exon e_start="96567" e_stop="96940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95978" e_stop="96053" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="96054" i_stop="96566" i_length="513"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="96567" e_stop="96940" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95978" stop="96053"/>
              <exon start="96567" stop="96940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296241" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGAATGGTTACCGGAAGTTGAAGTTCAATCAAGAAGCTGACAATACATTGCCGCGTTCTCAGCCACCAACAAGG : AACACAAACACATGCTATGATAGGAATAAGAGTTGCCTTGATGGTTGTGATGATTGTTATGATAAGCAACTGTATGGTTGGTATGGTGCCGTTCAGCGCCAGCTGCAAAGATCTCAGTATTACATGCAATATCGTCGACCTGTTCGAATAGTTTTCTCAGTGTTTCTTCTCATTTTCCTGATTGGTGAGTTTGCTAACGACTCTTGTTTTATCTATCTAACCTTTTATTGACTCTTTTACCCATAAACAGATTTTGAAAGTACTAAGAAAAAGAAATCCTTTATAGTGTATTCTCTGCTGCTGAGGTTTTTCTTCATTCTTCTGGATTGGGAAACCATCAATAGATATTGTTGAGTTTTCTGTGCCATTGATGC</gDNA_template>
            <first_frame> Q  E  W  L  P  E  V  E  V  Q  S  R  S  *  Q  Y  I  A  A  F  S  A  T  N  K   : E  H  K  H  M  L  *  *  E  *  E  L  P  *  W  L  *  *  L  L  *  *  A  T  V  W  L  V  W  C  R  S  A  P  A  A  K  I  S  V  L  H  A  I  S  S  T  C  S  N  S  F  L  S  V  S  S  H  F  P  D  W  *  V  C  *  R  L  L  F  Y  L  S  N  L  L  L  T  L  L  P  I  N  R  F  *  K  Y  *  E  K  E  I  L  Y  S  V  F  S  A  A  E  V  F  L  H  S  S  G  L  G  N  H  Q  *  I  L  L  S  F  L  C  H  *  C </first_frame>
            <second_frame>  K  N  G  Y  R  K  L  K  F  N  Q  E  A  D  N  T  L  P  R  S  Q  P  P  T  R  :  N  T  N  T  C  Y  D  R  N  K  S  C  L  D  G  C  D  D  C  Y  D  K  Q  L  Y  G  W  Y  G  A  V  Q  R  Q  L  Q  R  S  Q  Y  Y  M  Q  Y  R  R  P  V  R  I  V  F  S  V  F  L  L  I  F  L  I  G  E  F  A  N  D  S  C  F  I  Y  L  T  F  Y  *  L  F  Y  P  *  T  D  F  E  S  T  K  K  K  K  S  F  I  V  Y  S  L  L  L  R  F  F  F  I  L  L  D  W  E  T  I  N  R  Y  C  *  V  F  C  A  I  D   </second_frame>
            <third_frame>   R  M  V  T  G  S  *  S  S  I  K  K  L  T  I  H  C  R  V  L  S  H  Q  Q  G :   T  Q  T  H  A  M  I  G  I  R  V  A  L  M  V  V  M  I  V  M  I  S  N  C  M  V  G  M  V  P  F  S  A  S  C  K  D  L  S  I  T  C  N  I  V  D  L  F  E  *  F  S  Q  C  F  F  S  F  S  *  L  V  S  L  L  T  T  L  V  L  S  I  *  P  F  I  D  S  F  T  H  K  Q  I  L  K  V  L  R  K  R  N  P  L  *  C  I  L  C  C  *  G  F  S  S  F  F  W  I  G  K  P  S  I  D  I  V  E  F  S  V  P  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95979" stop="96053"/>
                    <exon start="96567" stop="96797"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNGYRKLKFNQEADNTLPRSQPPTRNTNTCYDRNKSCLDGCDDCYDKQLYGWYGAVQRQLQRSQYYMQYRRPVRIVFSVFLLIFLIGEFANDSCFIYLTFY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="102588" PGL_stop="101976"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102588" e_stop="102523"/>
            <exon e_start="102422" e_stop="101976"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.984"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="102588" e_stop="102523" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102522" i_stop="102423" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.936">
            <gDNA_exon_boundary e_start="102422" e_stop="101976" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102588" stop="102523"/>
              <exon start="102422" stop="101986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102583" stop="102523"/>
              <exon start="102422" stop="101976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623653" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCACCCTTTCTCAAGTTGCACAACACAAGTCAAAGCAAGATTGCTGGATTATCATCCATGGCAGA : ATAATAGACGTTACGAAGTTTCTTGAAGAACATCCTGGAGGAGAAGAAGTGTTGATTGAATCAGCTGGAAAGGATGCAACTAAAGAATTTGAAGATATTGGGCATAGTAAAGCTGCCAAGAACTATATCTTGAAATACCAGATTGGAAATCTTCAAGGCTATAAAATTCAAGATGATGATGATGATGATAATTTGTTTACTCATTCCAACAAAGAACCAATAAAGGCAAAAGAAATTGAAGCTTTTGTGATCAAACAAAACTTCAAGCCCAAGCATTTGTTTTTTTTTGAGTATTTTGTGCCTTTCTTGGCTGCAGCATTCTTTCTGTATTATCGATATCTCAATGGAGCACTCCAGCTTTGAACACCCACAACAAAGGGATTATCATATGATTTTCATTGATATTAAGTGTTCTTTTTCAACCTTCAAAAAGGGGGAAACCCCATA</gDNA_template>
            <first_frame> F  T  L  S  Q  V  A  Q  H  K  S  K  Q  D  C  W  I  I  I  H  G  R  :  I  I  D  V  T  K  F  L  E  E  H  P  G  G  E  E  V  L  I  E  S  A  G  K  D  A  T  K  E  F  E  D  I  G  H  S  K  A  A  K  N  Y  I  L  K  Y  Q  I  G  N  L  Q  G  Y  K  I  Q  D  D  D  D  D  D  N  L  F  T  H  S  N  K  E  P  I  K  A  K  E  I  E  A  F  V  I  K  Q  N  F  K  P  K  H  L  F  F  F  E  Y  F  V  P  F  L  A  A  A  F  F  L  Y  Y  R  Y  L  N  G  A  L  Q  L  *  T  P  T  T  K  G  L  S  Y  D  F  H  *  Y  *  V  F  F  F  N  L  Q  K  G  G  N  P  I </first_frame>
            <second_frame>  S  P  F  L  K  L  H  N  T  S  Q  S  K  I  A  G  L  S  S  M  A  E :   *  *  T  L  R  S  F  L  K  N  I  L  E  E  K  K  C  *  L  N  Q  L  E  R  M  Q  L  K  N  L  K  I  L  G  I  V  K  L  P  R  T  I  S  *  N  T  R  L  E  I  F  K  A  I  K  F  K  M  M  M  M  M  I  I  C  L  L  I  P  T  K  N  Q  *  R  Q  K  K  L  K  L  L  *  S  N  K  T  S  S  P  S  I  C  F  F  L  S  I  L  C  L  S  W  L  Q  H  S  F  C  I  I  D  I  S  M  E  H  S  S  F  E  H  P  Q  Q  R  D  Y  H  M  I  F  I  D  I  K  C  S  F  S  T  F  K  K  G  E  T  P   </second_frame>
            <third_frame>   H  P  F  S  S  C  T  T  Q  V  K  A  R  L  L  D  Y  H  P  W  Q   : N  N  R  R  Y  E  V  S  *  R  T  S  W  R  R  R  S  V  D  *  I  S  W  K  G  C  N  *  R  I  *  R  Y  W  A  *  *  S  C  Q  E  L  Y  L  E  I  P  D  W  K  S  S  R  L  *  N  S  R  *  *  *  *  *  *  F  V  Y  S  F  Q  Q  R  T  N  K  G  K  R  N  *  S  F  C  D  Q  T  K  L  Q  A  Q  A  F  V  F  F  *  V  F  C  A  F  L  G  C  S  I  L  S  V  L  S  I  S  Q  W  S  T  P  A  L  N  T  H  N  K  G  I  I  I  *  F  S  L  I  L  S  V  L  F  Q  P  S  K  R  G  K  P  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102588" stop="102523"/>
                    <exon start="102422" stop="102060"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTLSQVAQHKSKQDCWIIIHGRIIDVTKFLEEHPGGEEVLIESAGKDATKEFEDIGHSKAAKNYILKYQIGNLQGYKIQDDDDDDNLFTHSNKEPIKAKEIEAFVIKQNFKPKHLFFFEYFVPFLAAAFFLYYRYLNGALQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="106005" PGL_stop="103102"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106005" e_stop="105952"/>
            <exon e_start="105840" e_stop="105796"/>
            <exon e_start="103578" e_stop="103546"/>
            <exon e_start="103459" e_stop="103102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.868" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106005" e_stop="105952" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.868" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105951" i_stop="105841" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105840" e_stop="105796" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.973">
            <gDNA_intron_boundary i_start="105795" i_stop="103579" i_length="2217"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103578" e_stop="103546" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.787" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103545" i_stop="103460" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="103459" e_stop="103102" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106005" stop="105952"/>
              <exon start="105840" stop="105796"/>
              <exon start="103578" stop="103546"/>
              <exon start="103459" stop="103124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105987" stop="105952"/>
              <exon start="105840" stop="105796"/>
              <exon start="103578" stop="103546"/>
              <exon start="103459" stop="103102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCGCCGGAAGCAATGGTGATGACAAACTTCACTGGAACTGGTATCGGTGTTG : GTGCTGGCATTGGTTGCGGATTCGGTGTAGGATGGGGTTTCGGAG : GCATGCCTTTGAATTTCTTGGGTCTTGGTGTAG : GTGGTGGCTGTGGGATCGGAGTAGGCCTCGGATGGGGATTTGGCTCTGCCTTTGGTAGCCAGTACAGGAACTCTAGAGTTACATTTGACGGCACAGATTTTATCAATAAGGAGCGTAGTGAAGAAAGAGATTTAAAAGATCCAGCCAAAGGCACTGGAAAAGCTCTTTCTTCTCAGTAAATATACACATCTTCTGTTGATGCACTCATATTCTCACTTTCCAAAATTTGTTAAAGTTGTACAACCAGTTCCATTTCAGCTATCACTTGGAAACATATGTAGTATCATTTGACACTTGACAGTACTCTCTTCTTTGATGTCTAAAATTTGTTTACTTATGATGCTTGGGAAAACTCGGT</gDNA_template>
            <first_frame> V  R  R  K  Q  W  *  *  Q  T  S  L  E  L  V  S  V  L  :  V  L  A  L  V  A  D  S  V  *  D  G  V  S  E  :  A  C  L  *  I  S  W  V  L  V  *  :  V  V  A  V  G  S  E  *  A  S  D  G  D  L  A  L  P  L  V  A  S  T  G  T  L  E  L  H  L  T  A  Q  I  L  S  I  R  S  V  V  K  K  E  I  *  K  I  Q  P  K  A  L  E  K  L  F  L  L  S  K  Y  T  H  L  L  L  M  H  S  Y  S  H  F  P  K  F  V  K  V  V  Q  P  V  P  F  Q  L  S  L  G  N  I  C  S  I  I  *  H  L  T  V  L  S  S  L  M  S  K  I  C  L  L  M  M  L  G  K  T  R  </first_frame>
            <second_frame>  F  A  G  S  N  G  D  D  K  L  H  W  N  W  Y  R  C  W :   C  W  H  W  L  R  I  R  C  R  M  G  F  R  R :   H  A  F  E  F  L  G  S  W  C  R :   W  W  L  W  D  R  S  R  P  R  M  G  I  W  L  C  L  W  *  P  V  Q  E  L  *  S  Y  I  *  R  H  R  F  Y  Q  *  G  A  *  *  R  K  R  F  K  R  S  S  Q  R  H  W  K  S  S  F  F  S  V  N  I  H  I  F  C  *  C  T  H  I  L  T  F  Q  N  L  L  K  L  Y  N  Q  F  H  F  S  Y  H  L  E  T  Y  V  V  S  F  D  T  *  Q  Y  S  L  L  *  C  L  K  F  V  Y  L  *  C  L  G  K  L  G </second_frame>
            <third_frame>   S  P  E  A  M  V  M  T  N  F  T  G  T  G  I  G  V   : G  A  G  I  G  C  G  F  G  V  G  W  G  F  G   : G  M  P  L  N  F  L  G  L  G  V   : G  G  G  C  G  I  G  V  G  L  G  W  G  F  G  S  A  F  G  S  Q  Y  R  N  S  R  V  T  F  D  G  T  D  F  I  N  K  E  R  S  E  E  R  D  L  K  D  P  A  K  G  T  G  K  A  L  S  S  Q  *  I  Y  T  S  S  V  D  A  L  I  F  S  L  S  K  I  C  *  S  C  T  T  S  S  I  S  A  I  T  W  K  H  M  *  Y  H  L  T  L  D  S  T  L  F  F  D  V  *  N  L  F  T  Y  D  A  W  E  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106003" stop="105952"/>
                    <exon start="105840" stop="105796"/>
                    <exon start="103578" stop="103546"/>
                    <exon start="103459" stop="103281"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPEAMVMTNFTGTGIGVGAGIGCGFGVGWGFGGMPLNFLGLGVGGGCGIGVGLGWGFGSAFGSQYRNSRVTFDGTDFINKERSEERDLKDPAKGTGKALSSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="105994" e_stop="105935"/>
            <exon e_start="105840" e_stop="105796"/>
            <exon e_start="103578" e_stop="103546"/>
            <exon e_start="103459" e_stop="103117"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.915" acc_prob="0.999" e_score="0.950"/>
          <exon-intron don_prob="0.962" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="105994" e_stop="105935" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.915" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105934" i_stop="105841" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105840" e_stop="105796" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.973">
            <gDNA_intron_boundary i_start="105795" i_stop="103579" i_length="2217"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103578" e_stop="103546" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.787" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103545" i_stop="103460" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.936">
            <gDNA_exon_boundary e_start="103459" e_stop="103117" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105994" stop="105935"/>
              <exon start="105840" stop="105796"/>
              <exon start="103578" stop="103546"/>
              <exon start="103459" stop="103117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAATGGTGATGACAAACTTCACTGGAACTGGTATCGGTGTTGGTATGCATAAATGTTCA : GTGCTGGCATTGGTTGCGGATTCGGTGTAGGATGGGGTTTCGGAG : GCATGCCTTTGAATTTCTTGGGTCTTGGTGTAG : GTGGTGGCTGTGGGATCGGAGTAGGCCTCGGATGGGGATTTGGCTCTGCCTTTGGTAGCCAGTACAGGAACTCTAGAGTTACATTTGACGGCACAGATTTTATCAATAAGGAGCGTAGTGAAGAAAGAGATTTAAAAGATCCAGCCAAAGGCACTGGAAAAGCTCTTTCTTCTCAGTAAATATACACATCTTCTGTTGATGCACTCATATTCTCACTTTCCAAAATTTGTTAAAGTTGTACAACCAGTTCCATTTCAGCTATCACTTGGAAACATATGTAGTATCATTTGACACTTGACAGTACTCTCTTCTTTGATGTCTAAAATTTGTTTACTTATGATGC</gDNA_template>
            <first_frame> A  M  V  M  T  N  F  T  G  T  G  I  G  V  G  M  H  K  C  S  :  V  L  A  L  V  A  D  S  V  *  D  G  V  S  E  :  A  C  L  *  I  S  W  V  L  V  *  :  V  V  A  V  G  S  E  *  A  S  D  G  D  L  A  L  P  L  V  A  S  T  G  T  L  E  L  H  L  T  A  Q  I  L  S  I  R  S  V  V  K  K  E  I  *  K  I  Q  P  K  A  L  E  K  L  F  L  L  S  K  Y  T  H  L  L  L  M  H  S  Y  S  H  F  P  K  F  V  K  V  V  Q  P  V  P  F  Q  L  S  L  G  N  I  C  S  I  I  *  H  L  T  V  L  S  S  L  M  S  K  I  C  L  L  M  M  </first_frame>
            <second_frame>  Q  W  *  *  Q  T  S  L  E  L  V  S  V  L  V  C  I  N  V  Q :   C  W  H  W  L  R  I  R  C  R  M  G  F  R  R :   H  A  F  E  F  L  G  S  W  C  R :   W  W  L  W  D  R  S  R  P  R  M  G  I  W  L  C  L  W  *  P  V  Q  E  L  *  S  Y  I  *  R  H  R  F  Y  Q  *  G  A  *  *  R  K  R  F  K  R  S  S  Q  R  H  W  K  S  S  F  F  S  V  N  I  H  I  F  C  *  C  T  H  I  L  T  F  Q  N  L  L  K  L  Y  N  Q  F  H  F  S  Y  H  L  E  T  Y  V  V  S  F  D  T  *  Q  Y  S  L  L  *  C  L  K  F  V  Y  L  *  C </second_frame>
            <third_frame>   N  G  D  D  K  L  H  W  N  W  Y  R  C  W  Y  A  *  M  F   : S  A  G  I  G  C  G  F  G  V  G  W  G  F  G   : G  M  P  L  N  F  L  G  L  G  V   : G  G  G  C  G  I  G  V  G  L  G  W  G  F  G  S  A  F  G  S  Q  Y  R  N  S  R  V  T  F  D  G  T  D  F  I  N  K  E  R  S  E  E  R  D  L  K  D  P  A  K  G  T  G  K  A  L  S  S  Q  *  I  Y  T  S  S  V  D  A  L  I  F  S  L  S  K  I  C  *  S  C  T  T  S  S  I  S  A  I  T  W  K  H  M  *  Y  H  L  T  L  D  S  T  L  F  F  D  V  *  N  L  F  T  Y  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105941" stop="105935"/>
                    <exon start="105840" stop="105796"/>
                    <exon start="103578" stop="103546"/>
                    <exon start="103459" stop="103281"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MFSAGIGCGFGVGWGFGGMPLNFLGLGVGGGCGIGVGLGWGFGSAFGSQYRNSRVTFDGTDFINKERSEERDLKDPAKGTGKALSSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="106214" PGL_stop="109588"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106214" e_stop="106282"/>
            <exon e_start="106483" e_stop="106577"/>
            <exon e_start="107654" e_stop="107928"/>
            <exon e_start="108834" e_stop="109588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106214" e_stop="106282" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="106283" i_stop="106482" i_length="200"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106483" e_stop="106577" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.849">
            <gDNA_intron_boundary i_start="106578" i_stop="107653" i_length="1076"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107654" e_stop="107928" e_length="275"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107929" i_stop="108833" i_length="905"/>
          </intron>
          <exon e_serial="4" e_score="0.922">
            <gDNA_exon_boundary e_start="108834" e_stop="109588" e_length="755"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106214" stop="106282"/>
              <exon start="106483" stop="106577"/>
              <exon start="107654" stop="107928"/>
              <exon start="108834" stop="109150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106228" stop="106282"/>
              <exon start="106483" stop="106577"/>
              <exon start="107654" stop="107928"/>
              <exon start="108834" stop="109003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108951" stop="109453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108952" stop="109423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109002" stop="109588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCAGCAGTCAAGAAGATCAGCAGGCAACGATCGAGCCATGGCTTTCCTCTTCCACAAATTTCAAGAG : GGAGTGAAAATTCTTGCTAAAAGCCCCACTTTTGCTAGAGAATCGAGGCTTCTTCAGTTCGAAGCTGACATAAATCTACTATTCCTTTACACCAG : TTACAACCGTTTAGGAAGGAATGCCGAAGAAGCTGATGCAGAGGAGATTATTGATATGGCTAACAAAGCCTCATTAGACGATCAACAGAAGCAAGTTCATGAGAATGTGCATTCTCAGGTTACAAACTTTTGCAGCTATATGGATGACATATTACTCCTGGATCAAAAGGTCAAAGACAATCAGGCCACATCACCAGCAACACTACATTTTTCTCCTCGTAGTAGTGGCCTTGGTCTTGCTGTTGATGGGAATTCTCTAGCACAAGACCGCATTG : CCGTACCTGAAACCAAGACACTGCACCGCACAGAAGTTTCACAGAGGTTAAAAGATCTTATGGGCTACACTCTCGAGGTCAAACCATCTCAAATTCCTCATGAGGATGCTGGAAAGGGTTTATTCTTACAAGGTGAAGCCAATATTGGTTCTGTCATAGCATTCTATCCTGGAGTAGTCTACCCTCCAGCATATTACCGCTATATTCCTGGGTACCCTAGAGTTGATGCCCAAAATCCACATCTGATCACACGGTATGATGGGACTATGATCAATGCTCAGCCCTGGGGTGCTGGTGGTGAATGTCGTGAATTATGGGATTGGACCAGTTCTCCTGAACCTAAGTGCACTATGCAAGCTGGTGAAAAAGGTTCTGACCTAGATGGAACAGACGTTGGAGGCAACCTTGAAGTGTTTGAGAGGAGAAACCCTCTAGCCTTTGCTCATTTCGCCAACCACCCAGCCAAAGGCATGGTCCCCAATGTAATGGTATACCCTTATGATTTCCCCCTGCTTGAGGAGGACATGAGACCCTATATACCTAATGTTTCATTTGGAAACGATGAAGAAACAGAGACTAGTAAATTTGGCAGCTTTAGGTTCATCAAAATGTGGAAGTCCAACAACAATGAATCAAAAGTCCCCGTTCTGAAGACACTTCTTCTTGTGGCTACTAGGGCAATTTGTGATGAAGAGGTTATGTTGAACTACAGACTGAGCAATTCAGAGCACATACCGTCATGGTATACTCCAGTA</gDNA_template>
            <first_frame> Q  Q  Q  S  R  R  S  A  G  N  D  R  A  M  A  F  L  F  H  K  F  Q  E  :  G  V  K  I  L  A  K  S  P  T  F  A  R  E  S  R  L  L  Q  F  E  A  D  I  N  L  L  F  L  Y  T  S :   Y  N  R  L  G  R  N  A  E  E  A  D  A  E  E  I  I  D  M  A  N  K  A  S  L  D  D  Q  Q  K  Q  V  H  E  N  V  H  S  Q  V  T  N  F  C  S  Y  M  D  D  I  L  L  L  D  Q  K  V  K  D  N  Q  A  T  S  P  A  T  L  H  F  S  P  R  S  S  G  L  G  L  A  V  D  G  N  S  L  A  Q  D  R  I   : A  V  P  E  T  K  T  L  H  R  T  E  V  S  Q  R  L  K  D  L  M  G  Y  T  L  E  V  K  P  S  Q  I  P  H  E  D  A  G  K  G  L  F  L  Q  G  E  A  N  I  G  S  V  I  A  F  Y  P  G  V  V  Y  P  P  A  Y  Y  R  Y  I  P  G  Y  P  R  V  D  A  Q  N  P  H  L  I  T  R  Y  D  G  T  M  I  N  A  Q  P  W  G  A  G  G  E  C  R  E  L  W  D  W  T  S  S  P  E  P  K  C  T  M  Q  A  G  E  K  G  S  D  L  D  G  T  D  V  G  G  N  L  E  V  F  E  R  R  N  P  L  A  F  A  H  F  A  N  H  P  A  K  G  M  V  P  N  V  M  V  Y  P  Y  D  F  P  L  L  E  E  D  M  R  P  Y  I  P  N  V  S  F  G  N  D  E  E  T  E  T  S  K  F  G  S  F  R  F  I  K  M  W  K  S  N  N  N  E  S  K  V  P  V  L  K  T  L  L  L  V  A  T  R  A  I  C  D  E  E  V  M  L  N  Y  R  L  S  N  S  E  H  I  P  S  W  Y  T  P  V </first_frame>
            <second_frame>  S  S  S  Q  E  D  Q  Q  A  T  I  E  P  W  L  S  S  S  T  N  F  K  R :   E  *  K  F  L  L  K  A  P  L  L  L  E  N  R  G  F  F  S  S  K  L  T  *  I  Y  Y  S  F  T  P   : V  T  T  V  *  E  G  M  P  K  K  L  M  Q  R  R  L  L  I  W  L  T  K  P  H  *  T  I  N  R  S  K  F  M  R  M  C  I  L  R  L  Q  T  F  A  A  I  W  M  T  Y  Y  S  W  I  K  R  S  K  T  I  R  P  H  H  Q  Q  H  Y  I  F  L  L  V  V  V  A  L  V  L  L  L  M  G  I  L  *  H  K  T  A  L  :  P  Y  L  K  P  R  H  C  T  A  Q  K  F  H  R  G  *  K  I  L  W  A  T  L  S  R  S  N  H  L  K  F  L  M  R  M  L  E  R  V  Y  S  Y  K  V  K  P  I  L  V  L  S  *  H  S  I  L  E  *  S  T  L  Q  H  I  T  A  I  F  L  G  T  L  E  L  M  P  K  I  H  I  *  S  H  G  M  M  G  L  *  S  M  L  S  P  G  V  L  V  V  N  V  V  N  Y  G  I  G  P  V  L  L  N  L  S  A  L  C  K  L  V  K  K  V  L  T  *  M  E  Q  T  L  E  A  T  L  K  C  L  R  G  E  T  L  *  P  L  L  I  S  P  T  T  Q  P  K  A  W  S  P  M  *  W  Y  T  L  M  I  S  P  C  L  R  R  T  *  D  P  I  Y  L  M  F  H  L  E  T  M  K  K  Q  R  L  V  N  L  A  A  L  G  S  S  K  C  G  S  P  T  T  M  N  Q  K  S  P  F  *  R  H  F  F  L  W  L  L  G  Q  F  V  M  K  R  L  C  *  T  T  D  *  A  I  Q  S  T  Y  R  H  G  I  L  Q   </second_frame>
            <third_frame>   A  A  V  K  K  I  S  R  Q  R  S  S  H  G  F  P  L  P  Q  I  S  R   : G  S  E  N  S  C  *  K  P  H  F  C  *  R  I  E  A  S  S  V  R  S  *  H  K  S  T  I  P  L  H  Q  :  L  Q  P  F  R  K  E  C  R  R  S  *  C  R  G  D  Y  *  Y  G  *  Q  S  L  I  R  R  S  T  E  A  S  S  *  E  C  A  F  S  G  Y  K  L  L  Q  L  Y  G  *  H  I  T  P  G  S  K  G  Q  R  Q  S  G  H  I  T  S  N  T  T  F  F  S  S  *  *  W  P  W  S  C  C  *  W  E  F  S  S  T  R  P  H  C :   R  T  *  N  Q  D  T  A  P  H  R  S  F  T  E  V  K  R  S  Y  G  L  H  S  R  G  Q  T  I  S  N  S  S  *  G  C  W  K  G  F  I  L  T  R  *  S  Q  Y  W  F  C  H  S  I  L  S  W  S  S  L  P  S  S  I  L  P  L  Y  S  W  V  P  *  S  *  C  P  K  S  T  S  D  H  T  V  *  W  D  Y  D  Q  C  S  A  L  G  C  W  W  *  M  S  *  I  M  G  L  D  Q  F  S  *  T  *  V  H  Y  A  S  W  *  K  R  F  *  P  R  W  N  R  R  W  R  Q  P  *  S  V  *  E  E  K  P  S  S  L  C  S  F  R  Q  P  P  S  Q  R  H  G  P  Q  C  N  G  I  P  L  *  F  P  P  A  *  G  G  H  E  T  L  Y  T  *  C  F  I  W  K  R  *  R  N  R  D  *  *  I  W  Q  L  *  V  H  Q  N  V  E  V  Q  Q  Q  *  I  K  S  P  R  S  E  D  T  S  S  C  G  Y  *  G  N  L  *  *  R  G  Y  V  E  L  Q  T  E  Q  F  R  A  H  T  V  M  V  Y  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106214" stop="106282"/>
                    <exon start="106483" stop="106577"/>
                    <exon start="107654" stop="107928"/>
                    <exon start="108834" stop="109588"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQQSRRSAGNDRAMAFLFHKFQEGVKILAKSPTFARESRLLQFEADINLLFLYTSYNRLGRNAEEADAEEIIDMANKASLDDQQKQVHENVHSQVTNFCSYMDDILLLDQKVKDNQATSPATLHFSPRSSGLGLAVDGNSLAQDRIAVPETKTLHRTEVSQRLKDLMGYTLEVKPSQIPHEDAGKGLFLQGEANIGSVIAFYPGVVYPPAYYRYIPGYPRVDAQNPHLITRYDGTMINAQPWGAGGECRELWDWTSSPEPKCTMQAGEKGSDLDGTDVGGNLEVFERRNPLAFAHFANHPAKGMVPNVMVYPYDFPLLEEDMRPYIPNVSFGNDEETETSKFGSFRFIKMWKSNNNESKVPVLKTLLLVATRAICDEEVMLNYRLSNSEHIPSWYTPV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="106226" e_stop="106282"/>
            <exon e_start="106483" e_stop="106577"/>
            <exon e_start="107654" e_stop="107928"/>
            <exon e_start="108829" e_stop="109588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.798" e_score="1.000"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106226" e_stop="106282" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="106283" i_stop="106482" i_length="200"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106483" e_stop="106577" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.849">
            <gDNA_intron_boundary i_start="106578" i_stop="107653" i_length="1076"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107654" e_stop="107928" e_length="275"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.798">
            <gDNA_intron_boundary i_start="107929" i_stop="108828" i_length="900"/>
          </intron>
          <exon e_serial="4" e_score="0.922">
            <gDNA_exon_boundary e_start="108829" e_stop="109588" e_length="760"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106226" stop="106282"/>
              <exon start="106483" stop="106577"/>
              <exon start="107654" stop="107928"/>
              <exon start="108829" stop="109121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108951" stop="109453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108952" stop="109423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109002" stop="109588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGATCAGCAGGCAACGATCGAGCCATGGCTTTCCTCTTCCACAAATTTCAAGAG : GGAGTGAAAATTCTTGCTAAAAGCCCCACTTTTGCTAGAGAATCGAGGCTTCTTCAGTTCGAAGCTGACATAAATCTACTATTCCTTTACACCAG : TTACAACCGTTTAGGAAGGAATGCCGAAGAAGCTGATGCAGAGGAGATTATTGATATGGCTAACAAAGCCTCATTAGACGATCAACAGAAGCAAGTTCATGAGAATGTGCATTCTCAGGTTACAAACTTTTGCAGCTATATGGATGACATATTACTCCTGGATCAAAAGGTCAAAGACAATCAGGCCACATCACCAGCAACACTACATTTTTCTCCTCGTAGTAGTGGCCTTGGTCTTGCTGTTGATGGGAATTCTCTAGCACAAGACCGCATTG : CACAGCCGTACCTGAAACCAAGACACTGCACCGCACAGAAGTTTCACAGAGGTTAAAAGATCTTATGGGCTACACTCTCGAGGTCAAACCATCTCAAATTCCTCATGAGGATGCTGGAAAGGGTTTATTCTTACAAGGTGAAGCCAATATTGGTTCTGTCATAGCATTCTATCCTGGAGTAGTCTACCCTCCAGCATATTACCGCTATATTCCTGGGTACCCTAGAGTTGATGCCCAAAATCCACATCTGATCACACGGTATGATGGGACTATGATCAATGCTCAGCCCTGGGGTGCTGGTGGTGAATGTCGTGAATTATGGGATTGGACCAGTTCTCCTGAACCTAAGTGCACTATGCAAGCTGGTGAAAAAGGTTCTGACCTAGATGGAACAGACGTTGGAGGCAACCTTGAAGTGTTTGAGAGGAGAAACCCTCTAGCCTTTGCTCATTTCGCCAACCACCCAGCCAAAGGCATGGTCCCCAATGTAATGGTATACCCTTATGATTTCCCCCTGCTTGAGGAGGACATGAGACCCTATATACCTAATGTTTCATTTGGAAACGATGAAGAAACAGAGACTAGTAAATTTGGCAGCTTTAGGTTCATCAAAATGTGGAAGTCCAACAACAATGAATCAAAAGTCCCCGTTCTGAAGACACTTCTTCTTGTGGCTACTAGGGCAATTTGTGATGAAGAGGTTATGTTGAACTACAGACTGAGCAATTCAGAGCACATACCGTCATGGTATACTCCAGTA</gDNA_template>
            <first_frame> R  R  S  A  G  N  D  R  A  M  A  F  L  F  H  K  F  Q  E  :  G  V  K  I  L  A  K  S  P  T  F  A  R  E  S  R  L  L  Q  F  E  A  D  I  N  L  L  F  L  Y  T  S :   Y  N  R  L  G  R  N  A  E  E  A  D  A  E  E  I  I  D  M  A  N  K  A  S  L  D  D  Q  Q  K  Q  V  H  E  N  V  H  S  Q  V  T  N  F  C  S  Y  M  D  D  I  L  L  L  D  Q  K  V  K  D  N  Q  A  T  S  P  A  T  L  H  F  S  P  R  S  S  G  L  G  L  A  V  D  G  N  S  L  A  Q  D  R  I   : A  Q  P  Y  L  K  P  R  H  C  T  A  Q  K  F  H  R  G  *  K  I  L  W  A  T  L  S  R  S  N  H  L  K  F  L  M  R  M  L  E  R  V  Y  S  Y  K  V  K  P  I  L  V  L  S  *  H  S  I  L  E  *  S  T  L  Q  H  I  T  A  I  F  L  G  T  L  E  L  M  P  K  I  H  I  *  S  H  G  M  M  G  L  *  S  M  L  S  P  G  V  L  V  V  N  V  V  N  Y  G  I  G  P  V  L  L  N  L  S  A  L  C  K  L  V  K  K  V  L  T  *  M  E  Q  T  L  E  A  T  L  K  C  L  R  G  E  T  L  *  P  L  L  I  S  P  T  T  Q  P  K  A  W  S  P  M  *  W  Y  T  L  M  I  S  P  C  L  R  R  T  *  D  P  I  Y  L  M  F  H  L  E  T  M  K  K  Q  R  L  V  N  L  A  A  L  G  S  S  K  C  G  S  P  T  T  M  N  Q  K  S  P  F  *  R  H  F  F  L  W  L  L  G  Q  F  V  M  K  R  L  C  *  T  T  D  *  A  I  Q  S  T  Y  R  H  G  I  L  Q   </first_frame>
            <second_frame>  E  D  Q  Q  A  T  I  E  P  W  L  S  S  S  T  N  F  K  R :   E  *  K  F  L  L  K  A  P  L  L  L  E  N  R  G  F  F  S  S  K  L  T  *  I  Y  Y  S  F  T  P   : V  T  T  V  *  E  G  M  P  K  K  L  M  Q  R  R  L  L  I  W  L  T  K  P  H  *  T  I  N  R  S  K  F  M  R  M  C  I  L  R  L  Q  T  F  A  A  I  W  M  T  Y  Y  S  W  I  K  R  S  K  T  I  R  P  H  H  Q  Q  H  Y  I  F  L  L  V  V  V  A  L  V  L  L  L  M  G  I  L  *  H  K  T  A  L  :  H  S  R  T  *  N  Q  D  T  A  P  H  R  S  F  T  E  V  K  R  S  Y  G  L  H  S  R  G  Q  T  I  S  N  S  S  *  G  C  W  K  G  F  I  L  T  R  *  S  Q  Y  W  F  C  H  S  I  L  S  W  S  S  L  P  S  S  I  L  P  L  Y  S  W  V  P  *  S  *  C  P  K  S  T  S  D  H  T  V  *  W  D  Y  D  Q  C  S  A  L  G  C  W  W  *  M  S  *  I  M  G  L  D  Q  F  S  *  T  *  V  H  Y  A  S  W  *  K  R  F  *  P  R  W  N  R  R  W  R  Q  P  *  S  V  *  E  E  K  P  S  S  L  C  S  F  R  Q  P  P  S  Q  R  H  G  P  Q  C  N  G  I  P  L  *  F  P  P  A  *  G  G  H  E  T  L  Y  T  *  C  F  I  W  K  R  *  R  N  R  D  *  *  I  W  Q  L  *  V  H  Q  N  V  E  V  Q  Q  Q  *  I  K  S  P  R  S  E  D  T  S  S  C  G  Y  *  G  N  L  *  *  R  G  Y  V  E  L  Q  T  E  Q  F  R  A  H  T  V  M  V  Y  S  S  </second_frame>
            <third_frame>   K  I  S  R  Q  R  S  S  H  G  F  P  L  P  Q  I  S  R   : G  S  E  N  S  C  *  K  P  H  F  C  *  R  I  E  A  S  S  V  R  S  *  H  K  S  T  I  P  L  H  Q  :  L  Q  P  F  R  K  E  C  R  R  S  *  C  R  G  D  Y  *  Y  G  *  Q  S  L  I  R  R  S  T  E  A  S  S  *  E  C  A  F  S  G  Y  K  L  L  Q  L  Y  G  *  H  I  T  P  G  S  K  G  Q  R  Q  S  G  H  I  T  S  N  T  T  F  F  S  S  *  *  W  P  W  S  C  C  *  W  E  F  S  S  T  R  P  H  C :   T  A  V  P  E  T  K  T  L  H  R  T  E  V  S  Q  R  L  K  D  L  M  G  Y  T  L  E  V  K  P  S  Q  I  P  H  E  D  A  G  K  G  L  F  L  Q  G  E  A  N  I  G  S  V  I  A  F  Y  P  G  V  V  Y  P  P  A  Y  Y  R  Y  I  P  G  Y  P  R  V  D  A  Q  N  P  H  L  I  T  R  Y  D  G  T  M  I  N  A  Q  P  W  G  A  G  G  E  C  R  E  L  W  D  W  T  S  S  P  E  P  K  C  T  M  Q  A  G  E  K  G  S  D  L  D  G  T  D  V  G  G  N  L  E  V  F  E  R  R  N  P  L  A  F  A  H  F  A  N  H  P  A  K  G  M  V  P  N  V  M  V  Y  P  Y  D  F  P  L  L  E  E  D  M  R  P  Y  I  P  N  V  S  F  G  N  D  E  E  T  E  T  S  K  F  G  S  F  R  F  I  K  M  W  K  S  N  N  N  E  S  K  V  P  V  L  K  T  L  L  L  V  A  T  R  A  I  C  D  E  E  V  M  L  N  Y  R  L  S  N  S  E  H  I  P  S  W  Y  T  P  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107900" stop="107928"/>
                    <exon start="108829" stop="109588"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WEFSSTRPHCTAVPETKTLHRTEVSQRLKDLMGYTLEVKPSQIPHEDAGKGLFLQGEANIGSVIAFYPGVVYPPAYYRYIPGYPRVDAQNPHLITRYDGTMINAQPWGAGGECRELWDWTSSPEPKCTMQAGEKGSDLDGTDVGGNLEVFERRNPLAFAHFANHPAKGMVPNVMVYPYDFPLLEEDMRPYIPNVSFGNDEETETSKFGSFRFIKMWKSNNNESKVPVLKTLLLVATRAICDEEVMLNYRLSNSEHIPSWYTPV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 148 chains have been computed
$ 
$ memory statistics:
$ 295776 bytes spliced alignments in total
$ 94 spliced alignments have been stored
$ 3146 bytes was the average size of a spliced alignment
$ 23032 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1771 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 167 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-21 02:07:37
-->
