<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-05 08:35:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0008K13-plmNX/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330483" ref_strand="+" ref_description="SGN-U330483        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain, PF04484: Family of unknown function (DUF566) | chr1:18473743-18477491 FORWARD | Aliases: F10F5.10, F10F5_10(evalue: 6e-17, score=84.3) genbank/nr: gi|18402829|ref|NP_564558.1| expressed protein [Arabidopsis thaliana] gi|15028145|gb|AAK76696.1| unknown protein [Arabidopsis thaliana] gi|24030506|gb|AAN41399.1| unknown protein [Arabidopsis thaliana](evalue: 4e-15, score=84.3)">
      <seq>aaagttactgcggattttgtcacgccggagaggaggaaggtttctgcgaattttgtcacgccggagaggaagaaagctacagcggatttttatacaccggagaggagtaaagttgcggcggaattgagcacaccagcgagagatcggactgagaatgtcaagacaagtgatcagcataggtggccagggaggtcaaagtcactaaattcaagttttctgacacgaagcatggattgtggttctattgacaagcctaaatttggatccggaagtgtcactagttcgtcaatgaagtcggtgattgatatatatcatagagctagaattgaagctaaattgaaacctcaaagtgataatgatgaggtcgatatgaagtcagcttatggatcagctatgtctgctgatacattggcttcagatagtgaaagtgtctcttcagggagtacttcaggtgtccatgatggtccgagtgttattcatggacgaggaggtccccgtggtatagttgtgcctgctaggttttggcaagagactaacaacagaatcagacgagggccagaacttggttcttctatggacaatggcaatttgaaaacagtggcttcttctaagcaaatgggaaacaagaagtttctgactgatagccccagaacatcagcccgggttgtcccagcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="7713" stop="6436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7413" g_stop="6736" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-U330483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7413" e_stop="6736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTACTGCGGATTTTGTCACGCCGGAGAGGAGGAAGGTTTCTGCGAATTTTGTCACGCCGGAGAGGAAGAAAGCTACAGCGGATTTTTATACACCGGAGAGGAGTAAAGTTGCGGCGGAATTGAGCACACCAGCGAGAGATCGGACTGAGAATGTCAAGACAAGTGATCAGCATAGGTGGCCAGGGAGGTCAAAGTCACTAAATTCAAGTTTTCTGACACGAAGCATGGATTGTGGTTCTATTGACAAGCCTAAATTTGGATCCGGAAGTGTCACTAGTTCGTCAATGAAGTCGGTGATTGATATATATCATAGAGCTAGAATTGAAGCTAAATTGAAACCTCAAAGTGATAATGATGAGGTCGATATGAAGTCAGCTTATGGATCAGCTATGTCTGCTGATACATTGGCTTCAGATAGTGAAAGTGTCTCTTCAGGGAGTACTTCAGGTGTCCATGATGGTCCGAGTGTTATTCATGGACGAGGAGGTCCCCGTGGTATAGTTGTGCCTGCTAGGTTTTGGCAAGAGACTAACAACAGAATCAGACGAGGGCCAGAACTTGGTTCTTCTATGGACAATGGCAATTTGAAAACAGTGGCTTCTTCTAAGCAAATGGGAAACAAGAAGTTTCTGACTGATAGCCCCAGAACATCAGCCCGGGTTGTCCCAGCTTCT</genome_strand>
        <mrna_strand>AAAGTTACTGCGGATTTTGTCACGCCGGAGAGGAGGAAGGTTTCTGCGAATTTTGTCACGCCGGAGAGGAAGAAAGCTACAGCGGATTTTTATACACCGGAGAGGAGTAAAGTTGCGGCGGAATTGAGCACACCAGCGAGAGATCGGACTGAGAATGTCAAGACAAGTGATCAGCATAGGTGGCCAGGGAGGTCAAAGTCACTAAATTCAAGTTTTCTGACACGAAGCATGGATTGTGGTTCTATTGACAAGCCTAAATTTGGATCCGGAAGTGTCACTAGTTCGTCAATGAAGTCGGTGATTGATATATATCATAGAGCTAGAATTGAAGCTAAATTGAAACCTCAAAGTGATAATGATGAGGTCGATATGAAGTCAGCTTATGGATCAGCTATGTCTGCTGATACATTGGCTTCAGATAGTGAAAGTGTCTCTTCAGGGAGTACTTCAGGTGTCCATGATGGTCCGAGTGTTATTCATGGACGAGGAGGTCCCCGTGGTATAGTTGTGCCTGCTAGGTTTTGGCAAGAGACTAACAACAGAATCAGACGAGGGCCAGAACTTGGTTCTTCTATGGACAATGGCAATTTGAAAACAGTGGCTTCTTCTAAGCAAATGGGAAACAAGAAGTTTCTGACTGATAGCCCCAGAACATCAGCCCGGGTTGTCCCAGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330498" ref_strand="+" ref_description="SGN-U330498        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain, PF04484: Family of unknown function (DUF566) | chr3:6797575-6801720 FORWARD | Aliases: MMB12.3(evalue: 1e-16, score=83.6) genbank/nr: Protein(evalue: 1e-20, score=102)">
      <seq>agttatgctcgcaaatatttccttcaggtcccactttctctctcctctttctttctcctccgcgtatattgctcgccggcgttcgtaacggtcatatttccgggtttttgagagggtgaatttttcggagagatgtgaagaattgtgagaagtggcaatggtggctgcagtatcaacaacaaagcccaatcagaaggtcacatctaatggtttgagttaccagaatccgaaaagaccgccattgttgccttcagaagctcagaatggaccttctagaaaaccgaaatctagagaggttacttcaaggtatctttcgacttcttcttcatcttctgtctcaacgacgtcgtcttcgaatacttcgactacttactcttcatcgtctaatacgattgcctcactgaggactccatcgccgatggggactaggacggttcgacctgctgcgacgccggttcaaaattccggttcagttaaacggtcacagtcggtggaccggagacgaccggtaacgccagcgtctacggagaagtctgctgcggcgaagcagctgttgaattccagtaggagtttatccgtttcctttcaaggtcagtctttctctatacctgttagtaaggcaaagccccctcctgcgacgaacaatattggaaatgtgaggaggggtacgccggagaggaagaaagttactgcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="8551" stop="7100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8251" g_stop="8150" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8149" i_stop="7994" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7993" g_stop="7400" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="696" r_length="594" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-U330498" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8251" e_stop="8150"/>
          <exon e_start="7993" e_stop="7400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTATGCTCGCAAATATTTCCTTCAGGTCCCACTTTCTCTCTCCTCTTTCTTTCTCCTCCGCGTATATTGCTCGCCGGCGTTCGTAACGGTCATATTTCCGGTATGTTTCTCTCTCTAAAAATTACAAAGTAAAAAATCTCTACATTAATACAGGCATTATTAATACACATACTATTAATTTCAGATTGTAGTAGTAATCTCTTCGTATTTTGCACTTTATTACTCTATAAATTCAGCTGAATTTCTGGTGAATTAGGGTTTTTGAGAGGGTGAATTTTTCGGAGAGATGTGAAGAATTGTGAGAAGTGGCAATGGTGGCTGCAGTATCAACAACAAAGCCCAATCAGAAGGTCACATCTAATGGTTTGAGTTACCAGAATCCGAAAAGACCGCCATTGTTGCCTTCAGAAGCTCAGAATGGACCTTCTAGAAAACCGAAATCTAGAGAGGTTACTTCAAGGTATCTTTCGACTTCTTCTTCATCTTCTGTCTCAACGACGTCGTCTTCGAATACTTCGACTACTTACTCTTCATCGTCTAATACGATTGCCTCACTGAGGACTCCATCGCCGATGGGGACTAGGACGGTTCGACCTGCTGCGACGCCGGTTCAAAATTCCGGTTCAGTTAAACGGTCACAGTCGGTGGACCGGAGACGACCGGTAACGCCAGCGTCTACGGAGAAGTCTGCTGCGGCGAAGCAGCTGTTGAATTCCAGTAGGAGTTTATCCGTTTCCTTTCAAGGTCAGTCTTTCTCTATACCTGTTAGTAAGGCAAAGCCCCCTCCTGCGACGAACAATATTGGAAATGTGAGGAGGGGTACGCCGGAGAGGAGGAAAGTTACTGCGGA</genome_strand>
        <mrna_strand>AGTTATGCTCGCAAATATTTCCTTCAGGTCCCACTTTCTCTCTCCTCTTTCTTTCTCCTCCGCGTATATTGCTCGCCGGCGTTCGTAACGGTCATATTTCCG............................................................................................................................................................GGTTTTTGAGAGGGTGAATTTTTCGGAGAGATGTGAAGAATTGTGAGAAGTGGCAATGGTGGCTGCAGTATCAACAACAAAGCCCAATCAGAAGGTCACATCTAATGGTTTGAGTTACCAGAATCCGAAAAGACCGCCATTGTTGCCTTCAGAAGCTCAGAATGGACCTTCTAGAAAACCGAAATCTAGAGAGGTTACTTCAAGGTATCTTTCGACTTCTTCTTCATCTTCTGTCTCAACGACGTCGTCTTCGAATACTTCGACTACTTACTCTTCATCGTCTAATACGATTGCCTCACTGAGGACTCCATCGCCGATGGGGACTAGGACGGTTCGACCTGCTGCGACGCCGGTTCAAAATTCCGGTTCAGTTAAACGGTCACAGTCGGTGGACCGGAGACGACCGGTAACGCCAGCGTCTACGGAGAAGTCTGCTGCGGCGAAGCAGCTGTTGAATTCCAGTAGGAGTTTATCCGTTTCCTTTCAAGGTCAGTCTTTCTCTATACCTGTTAGTAAGGCAAAGCCCCCTCCTGCGACGAACAATATTGGAAATGTGAGGAGGGGTACGCCGGAGAGGAAGAAAGTTACTGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341623" ref_strand="+" ref_description="SGN-U341623        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to transcription initiation factor IID (TFIID) component TAF4 family protein [Arabidopsis thaliana] (TAIR:At1g27720.1); similar to putative protein [Oryza sativa] (GB:CAC39055.1); contains InterPro domain Transcription initiation factor TFIID component TAF4 (InterPro:IPR007900) | chr5:17332677-17338391 REVERSE | Aliases: MMG4.16, MMG4_16(evalue: 3e-21, score=76.3) genbank/nr: transcription(evalue: 2e-19, score=76.3)">
      <seq>ttcgcgtatccatccgatagggatgctataaacaataaaacaaagagaatcatcactttttttcactgtataattttccagagactggaaattttgctactcttcttccttaatcgttcgaaaaattaattagtacattcatggaaacctagaaatacatcaactaacggatctcccattttttcctttttgaaacgaatcaattgctgcaatatacggttatatataaccatttttcaaatttctgaatcaatggatccgtctatcatgaagctccttgaagaagacgaggatgaaacaatgcattcgggggcggatgtggaggcattcactgctgccctaaacagggatatcggtggagataattcacaatctcagccttcggattccgatagcgtgccattgtctcaaggaagcagttatacctcaaatcagtttgccccatggcaaactgctaaccatgacgaaaatgccagtcgttgtaaccttcaagattcagagaccatccagccaaaggaggaaaatgtgtctgatatgcagttgaagagacttgatacagattctcagaatcagcagcaaaaaaatgattcatcacaggagatcaattcccttcccgtgcagcatatatcccaggacagttatcaaaccacagaggttgaacaggacacacttcattcttctagagcagtgaatatgccgaatcctgaaaagaatacgcaaaatccagaatctccacatctgaatttacagggaacaaataatttacagcccatgcagagtttgacaacaggaactagtagtctgccacgtgtggcaacagtggcaagtaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="33398" stop="37567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33676" g_stop="33966" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33967" i_stop="34094" i_length="128">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34095" g_stop="34200" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="397" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34201" i_stop="36831" i_length="2631">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36832" g_stop="37267" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="833" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-U341623" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33676" e_stop="33966"/>
          <exon e_start="34095" e_stop="34200"/>
          <exon e_start="36832" e_stop="37267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCGTATTCATTAGAAATTTATGCTATAAACAATAAAACAAAGAGAATCATCAAATTTTTTCACTGTATAATTTTCCAGAGACTGGAAATTTTGCTACTCTTCTTCCTTAATCGTTCGAAAAATTAATTCGTACATTCATGGAAACCTAGAAATACATCAACTAACGGATCTCCCATTTTTTCCTTTTTGAAACGAATTAATTGCTGCAATATACGGTTATATATAACCATTTTTCAAATTTCTGAATCAATGGATCCGTCTATCATGAAGCTCCTTGAAGAAGACGAGGTTGGTACTTTTTTTTTTTTTTCGAATTAGCCCTTTTCATGTTCTGGGTGACAGATATGTATGTTTGTTGGGTGATAGATATATATGTTTATGGTGAAATGGTGGATTTATGTGAATTTTGGATATAGGATGAAACAATGCATTCGGGGGCGGATGTGGAGGCATTCACTGCTGCCCTAAACAGGGATATCGGTGGAGATAATTCACAATCTCAGCCTTCGGATTCCGATAGCGGTAATATTATCACTATTTAGCAATTGAATTTTTCAATTTCACTATAGATTGTCATTCAACTAAGTTTATTGCCAACTGTATAGATTAGGCTAAATTATGGTCGTTAGATGTATATGATATGTTGGCGTTACTAACATGGGAAAATAAGTAGTAGGGAGGCTTATAGGGTTAGTAATTGCTAATGGAAGGGTAGAAGTAGGGGAAGTTGTAATTGTTGTCAAGAATTTGGAGGGGAGAAAGTGTGGGTACTTTATGGCACCTCTGGAATTTTTGTGGTGGAGAGAAGCTAAAATATGGCAAAGTTGTTGGGTGTGCACTGTGCATGGGGTGGTATGGAACCATGAAGGTCTATGTATTAGATGTCAACTATTTTATAGAGGAGCTTTAGAATTTTTACGTCAAAATAGGTTCTATAAGTAGTATCGGGATTTAGTTGACACGGGGCTTATTAATCTAACTGAATTATTGTTATTTCAATTCTTTTTTTCATATGATTATTGCGATTGATTATTGTTATTTTTCTATTATTACGTGTACATCTGTTCCTATTGTGCATTTCCTAGAACACACTTAAATTCACTTGGTGCTTGAAGCCAGAACCTTGGTGCCTTCTAGCTTTTCATCTTTGAACACTGAATTATACTAATAAAGTTTTTCCCTACTCAAAAAAGCAGTATTTACGGTGCTACTTTCTTTTTCTTTTTTTTTTTGAAATAAGTAACTTTGTATTATATCACAAAAGAGTATATGGGTTGTACTGAAACATAATACACAGATGTCTCCTATTCCACTGGTTTCACTCTATATTGAGTCTAAAACATCTGTTACTGATACAGTGTCATTGGAGTGTACTTGATTACTCCAAAAACATAACAATTAAATGCAGTTTAATGACTTTCTGAACATCATTCGCTATGCTCTCAAAACACCTAGAATTCCTTTCTTTTCAAATAGTCCACCATATACTCGCAGGGACAATTCTCATATGTTTCTGACCTTTGCATTCACCCCTGCTGCCTCCCAACTCTTGAAAGCCTCTGATACCTTACTAGGCATGATCCAGGAGATACCTTTGAGGTTCAAAAAAATCCTCCATAGTTGTTGGGTATACTTGCAGTGTAGGAACAGATGGTTCACCGTCTCTAATGCCTCCCCACAAAGGAAACAACTATAGCATAACCTTATCCCTCTTTTCTTCAACTTATCGTGATGTTACGATGTTTTAGAAAAGGTCAAAGTTCCTTTTTTTCTTCTTTTAATGTAGGTCAACCCATTTCAGTATTAACAGTGATACTCTCTTATAATAATGTTTCCGGATCCGTCTATTACATTTTGCCTCTGTTGCTTTAGTATCATCCTCCTATTATCTCATTCTTCGATTTCTTATTAGCATATGTTATTTTTTTTGCTTTCGGCTGTTGTATTATTTGCTATTGATACTGTTTTCTTCTTCATTATGGTATTTCCTTTTCAAAATTGCTTTAAACTGCTTTATTTGAGCTGAAAATCTTTTGGAAACAACTCCGTTACCTCCACAAGTTGGGGATGCGATATGTCACCCTCCTGAGACCCCACTTATGGACACACTAGGTATGTTGTTGTTGTTGTAATGTATGTCAAACCTCCTCAAGCAGGAGTCAAACAATGGTTTTTCCTGCTTTGTCCTCTTGATGACTCGAACCTTTAACCCTCAATAACATCTTTTCCTATTTATCCACAAGTATACTACATCAAAGTAGCCATCTATTACAAACTAGACTGACTCCATCTGTGCTTTTTGTCATAAATAGTCTATAACATCAAAAAGTTCTTCTGCCTGTACTAAAACTTCTGTTTACACCAAAAATATACAATTCATCTTAAAATTCTGCAAATTGTTCTTCTTGCCCTCAAAACATCTTTGATTCCTTTCTTTCCACACTGTCCACCATATACAAGCTGGGACAATCCTCCATCTCTCCTCCTTAATTGTAGTATTGCCTATATTGATCTAACAATTTAGGAGTTGTGCTATGTTTCTTGGTTTCACCCAAATGATCTTCCTAAGGCTGCTGAATATTCTCCATAATTGATCTGTCCATTTGCAATGCAGGAAGAGATGGTTGACTATCTCTGCCTCTGTTCCTCACACAAAAAGCATCTTGAACATAGTTGAAACTTCCTCTTCTTTATATTTTTTTGTGTCATCACTGCTTCCTTTGCTAGTAACCATGTGAAACAGTTTACCTTGTATGGGATTTTAGGTTTCCATATCATCTGCCATGGCCAGAGCTCCTTCCTGTCATTTGAATTTGAATGATTGAGGTCTTTGTAAGCTGACTTGACACTGAAAACCCCTTTGCTGTAAGGGTCCTTTTGACTAAGCTATCCTTCCCTTGCCTTAACAAAGAGAATTTTTTCCCCAGTTTGCCAATTCATCTGTGTTTCATATAGCAGCAGAGTAAACATTTCAGAGTTGCATGAGAATATCTAAGCTGAAAGAGTTTTGATGTGAAGACAATTTGTGATTGTGGTCGGAACTTGGTCTTAGAAAGCTACTGTATCTTCATCACTTGCATACTCTGTCTTCTTTCAGTATTCTGTTTCTCCTTCCTTGGGAACAATCTTATCTTTTGCATAATTTACAAACAGTGCCATTGTCTCAAGGAAGCAGTTATACCTCAAATCAGTTTGCCCCATGGCAAACTGCTAACCATGACGAAAATGCCAGTCGTTGTAACCTTCAAGATTCAGAGACCATCCAGCCAAAGGAGGAAAATGTGTCTGATATGCAGTTGAAGAGACTTGATACAGATTCTCAGAATCAGCAGCAAAAAAATGATTCATCACAGGAGATCAATTCCCTTCCCGTGCAGCATATATCCCAGGACAGTTATCAAACCACAGAGGTTGAACAGGACACACTTCATTCTTCTAGAGCAGTGAATATGCCGAATCCTGAAAAGAATACGCAAAATCCAGAATCTCCACATCTGAATTTACAGGGAACAAATAATTTACAGCCCATGCAGAGTTTGACAACAGGAACTAGTAGTCTGCCACGTGTGGCAACAGTGGCAAGTAATCA</genome_strand>
        <mrna_strand>TTCGCGTATCCATCCGATAGGGATGCTATAAACAATAAAACAAAGAGAATCATCACTTTTTTTCACTGTATAATTTTCCAGAGACTGGAAATTTTGCTACTCTTCTTCCTTAATCGTTCGAAAAATTAATTAGTACATTCATGGAAACCTAGAAATACATCAACTAACGGATCTCCCATTTTTTCCTTTTTGAAACGAATCAATTGCTGCAATATACGGTTATATATAACCATTTTTCAAATTTCTGAATCAATGGATCCGTCTATCATGAAGCTCCTTGAAGAAGACGAG................................................................................................................................GATGAAACAATGCATTCGGGGGCGGATGTGGAGGCATTCACTGCTGCCCTAAACAGGGATATCGGTGGAGATAATTCACAATCTCAGCCTTCGGATTCCGATAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATTGTCTCAAGGAAGCAGTTATACCTCAAATCAGTTTGCCCCATGGCAAACTGCTAACCATGACGAAAATGCCAGTCGTTGTAACCTTCAAGATTCAGAGACCATCCAGCCAAAGGAGGAAAATGTGTCTGATATGCAGTTGAAGAGACTTGATACAGATTCTCAGAATCAGCAGCAAAAAAATGATTCATCACAGGAGATCAATTCCCTTCCCGTGCAGCATATATCCCAGGACAGTTATCAAACCACAGAGGTTGAACAGGACACACTTCATTCTTCTAGAGCAGTGAATATGCCGAATCCTGAAAAGAATACGCAAAATCCAGAATCTCCACATCTGAATTTACAGGGAACAAATAATTTACAGCCCATGCAGAGTTTGACAACAGGAACTAGTAGTCTGCCACGTGTGGCAACAGTGGCAAGTAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341677" ref_strand="+" ref_description="SGN-U341677        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to transcription initiation factor IID (TFIID) component TAF4 family protein [Arabidopsis thaliana] (TAIR:At1g27720.1); similar to putative protein [Oryza sativa] (GB:CAC39055.1); contains InterPro domain Transcription initiation factor TFIID component TAF4 (InterPro:IPR007900) | chr5:17332677-17338391 REVERSE | Aliases: MMG4.16, MMG4_16(evalue: 1e-65, score=221) genbank/nr: transcription(evalue: 8e-64, score=221)">
      <seq>tttcctacatcagagcattggacaacttaaggacgttactgctgatatatggggttaatctcagggaagaggaaaatcaactattttctgggcccaaggaggacagtcgagtttctgaagcatctcgtcgagttgtgcaagaagaagaggaaaggttgattttgcataaaattccacttcaaaagaaattgacagaaatcatggcaaaatgtggtttaaagagtatgagcagtgatgtcgaacggtgcttgtcgttgtgtgtggaggaaagaatgcgtggactcataagtagtctcatcagactgtctaaacagagagttgacattgagaagtcaagacacagaacaattgtcacctcacatgttcgtgaagaaatcatgtcaatcaatcgaaaagcccgggaagaatgggaaaggaaacaagctgatgtggacaaactccaaaaggcaaatgaaccttgaagtagtactggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="42047" stop="43331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42165" g_stop="42228" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.859"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42229" i_stop="42349" i_length="121">
            <donor d_prob="0.959" d_score="0.84"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42350" g_stop="42485" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="201" r_length="136" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42486" i_stop="42614" i_length="129">
            <donor d_prob="0.874" d_score="0.96"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42615" g_stop="42670" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="257" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42671" i_stop="42754" i_length="84">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42755" g_stop="42811" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="314" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42812" i_stop="42890" i_length="79">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42891" g_stop="43031" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="455" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43032" i_stop="43166" i_length="135">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43167" g_stop="43186" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="475" r_length="20" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-U341677" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42165" e_stop="42228"/>
          <exon e_start="42350" e_stop="42485"/>
          <exon e_start="42615" e_stop="42670"/>
          <exon e_start="42755" e_stop="42811"/>
          <exon e_start="42891" e_stop="43031"/>
          <exon e_start="43167" e_stop="43186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTAGATCAGAGCATTGAACAACTTAATGATGTTACTGCTGTTA-GTGGGGTTAATCTAAGGGTAATACCTTCTTCGATGCCCAACAGTGGAATGTATATTGTGCTCATCATTAGTTGTTTAAAGCATTTAATCAGAAGTATTGGGAAGTAGTTTGATATTTTTTTGTAATGCATAAAAACAGGAAGAGGAAGAGCAACTATTTTCTGGGCCCAAGGAGGACAGTCGAGTTTCTGAAGCATCTCGTCGAGTTGTGCAAGAAGAAGAGGAAAGGTTGATTTTGCAGAAAATTCCACTTCAGAAGAAATTGACAGAAATCAGTTAAATCCCTTTTTTAGATCTTCCCTTTGTTTTTGATGTGCAACTTGTTATTATATAATACATGATAGAGTATGTCAGCTTCCTAACTAAATTGCATGTTTTCTTGCTTACCTGATACTGTCTGACAGTGGCAAAATGTGGTTTAAAGAGTATGAGCAGTGATGTCGAACGGTGCTTGTCGTTGGTGAGATATGATCTTTTTCTGTTTGTTTGACTCTTCTTTTTGGGAGATTCTTGTGCCACTGAACTTTGAACTTTCAACTTCCAGTGTGTGGAGGAAAGAATGCGTGGACTCATAAGTAGTCTCATCAGACTGTCAAAACAGGTTAATATTTTGCTTGGTCTCTGTGAAAAGCTTATAGTATTCTTCTTATGAACCTGAGATAGAGGTCTTCTTTCTGTAGAGAGTTGACATTGAGAAGTCAAGACACAGAACAATTGTCACCTCAGATGTTCGTGAAGAAATCATGTCAATCAATCGAAAAGCCCGGGAAGAATGGGAAAGGAAACAAGCTGATGTGGAGAAACTCCAAAAGGCAAATGAAGTGAGTTATCTTTCTTTCCACTTTGAGCGTTCTTCAACTAAGTTTCTACTGGTCAATGTTCATATGGAATATTATGTTATCTGCTCCAAAAAATGACAATATGGAAAATTGTTAACTTAATGACTTGGATATCAGCCTGAAGGTAGTACTGGAGT</genome_strand>
        <mrna_strand>TTTCCTACATCAGAGCATTGGACAACTTAAGGACGTTACTGCTGATATATGGGGTTAATCTCAGG.........................................................................................................................GAAGAGGAAAATCAACTATTTTCTGGGCCCAAGGAGGACAGTCGAGTTTCTGAAGCATCTCGTCGAGTTGTGCAAGAAGAAGAGGAAAGGTTGATTTTGCATAAAATTCCACTTCAAAAGAAATTGACAGAAATCA.................................................................................................................................TGGCAAAATGTGGTTTAAAGAGTATGAGCAGTGATGTCGAACGGTGCTTGTCGTTG....................................................................................TGTGTGGAGGAAAGAATGCGTGGACTCATAAGTAGTCTCATCAGACTGTCTAAACAG...............................................................................AGAGTTGACATTGAGAAGTCAAGACACAGAACAATTGTCACCTCACATGTTCGTGAAGAAATCATGTCAATCAATCGAAAAGCCCGGGAAGAATGGGAAAGGAAACAAGCTGATGTGGACAAACTCCAAAAGGCAAATGAA.......................................................................................................................................CCTTGAAGTAGTACTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330947" ref_strand="+" ref_description="SGN-U330947        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ctcgtgccgggaggatagtgtgtacgctgcgatactcctatccttggaaaggaagtgttcaagttcgtgtatagatttattctcttaatatcttgttaatgagtctttaataggataattattttcttacaattctgacattagcttttaaaacataactgaccatttgagtagtttttgtattcaatttgtgcaattgtgacatattttttaatagctttgaatagtggtttttacattgttatgtatttggatgttacaagctattagatgtgaagcgtctgtccactcctttgcctaggtatgctcctatgcattggcttgggaagtgtggaaaaagtggacgtaatcttctcctttataatgtcatatacacgtcaagattaaaaaaggagaaaattttcataccattttcgtgattattttagcaagtagcaagtccgaaattttctttgtttttatcagaacaatatatgttgaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="53707" stop="52631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53415" g_stop="52931" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-U330947" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53415" e_stop="52931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAAC</genome_strand>
        <mrna_strand>CTCGTGCCGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320754" ref_strand="+" ref_description="SGN-U320754        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | acyl-CoA binding protein, putative / ACBP, putative, contains similarity to acyl-CoA binding protein 2 (Arabidopsis thaliana) gi:12039034:gb:AAG46057 | chr4:12565101-12568856 REVERSE | Aliases: None(evalue: 5e-11, score=65.9) genbank/nr: gi|45773894|gb|AAS76751.1| At4g24230 [Arabidopsis thaliana] >gi|42600567|gb|AAS21130.1| At4g24230 [Arabidopsis thaliana] (evalue: 4e-09, score=65.9)">
      <seq>agaaaattgagggtgttttagagaaagatgatgactttacggtcgaaaaggtttgtgaaaatcttgatttgaataagcactgtggtggtgaaagtgatgatcatgatgatgcagatgtgtgtagcaaaattgagttgatggaggaaaaggatgaggttaagaagattgatgagttgcttgttgtgaaggttaaagataccgcgaatgctgtggttgttgatgaagtcaaagtaggtgaaaatgaggtggttgaggtaggaggtgggttgagtaaaggggatgatgagaagacggataagatggcgatggatgaagatattgatgatgattgggagggaattgagagaagtgaattggaggaggaatttgctaaagctgttaactttgtggatgggggaaatggaaagaatagtggtatggagaatatggggagtgaattgatgatgcaattgtatggactccagaaaattgcaatcgaaggaccttgttacgaacctcaaccaatggcattgaaagtctatgcccgtgccaaatggtataacctcatactccaaaaaatatgagctttagcatattgttttgtactctatttcaattgcattaattttttaaaatgttctttgatttgtttgaaccaaaaaaagtaatttctgtagcgaatgcttgcgtttatctagttagttggatatttgtgattattggattagtagaagcttttgtaggagaggacacaatcaatatatactaaagaagattagaaggaacactgctgaaaatggggaagataaatcaccatctcacatatagtttgatcgactttgagtttaatcattcacgattgaattccttaacgttgttgtatgatctgatctaaagtagctttccccttgcatagtagaactagcatttattctttactttttttcatcagatctaccgtatcctggttttaccagagaatagtttgaccagaaactagaatagatatctatagcctaaatttcgtagttaaattgagaggacggagtcaggaaactaaacatgatatttagtacatttatatcataagaaacttgtgttagaatttagaaaaagatacctagcataaattcaataagcagtaaaggacagaccttcaaactacttttcggtgtagtttgattgctagttatacaacaggaatgaaagctgctttctgtaagtgatggaggacaataattccattgtgcaaggaatgcgtggcaaaaaatgggaaccatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="72756" stop="74643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73096" g_stop="74343" g_length="1248"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="1261" r_length="1248" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-U320754" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1248</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73096" e_stop="74343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGAAAAGGAAGATGATGACTTTACGGTCGAAAAGGTTTGTGAAAATCTTGATTTGAATAAGCACTGTGGTGGTGAAAGTGATGATCATGATGATGCAGATGTGTGCAGCAAAATTGAGTTGATGGAGGAAAAGGATGAGGTTAAGAAGATTGATGAGTTGCTTGTTGTGAAGGAGAAAGATACCGCGAATGCTGTGGTTGTTGATGAAGTCAAAGTAGGTGAAAATGAGGTGGTTGAGGTAGGAGGTGGGTTGAGTAAAGGGGATGATGAGAAGACGGATAAGATGGCGATGGATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTAGGAGAGGACACAATCAATATATACTAAAGAAGATTAGAAGGAACACTGCTGAAAATGGGGAAGATAAATCACCATCTCACATATAGTTTGATCGACTTTGAGTTTAATCATTCACGATTGAATTCCTTAACGTTGTTGTATGATCTGATCTAAAGTAGCTTTCCCCTTGCATAGTAGAACTAGCATTTATTCTTTACTTTTTTTCATCAGATCTACCGTATCCTGGTTTTACCAGAGAATAGTTTGACCAGAAACTAGAATAGATATCTATAGCCTAAATTTCGTAGTTAAATTGAGAGGACGGAGTCAGGAAACTAAACATGATATTTAGTACATTTATATCATAAGAAACTTGTGTTAGAATTTAGAAAAAGATACCTAGCATAAATTCAATAAGCAGTAAAGGACAGACCTTCAAACTACTTTCGGGTGTAGTTTGATTGCTAGTTATACAACAGGAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGA</genome_strand>
        <mrna_strand>TGTTTTAGAGAAAGATGATGACTTTACGGTCGAAAAGGTTTGTGAAAATCTTGATTTGAATAAGCACTGTGGTGGTGAAAGTGATGATCATGATGATGCAGATGTGTGTAGCAAAATTGAGTTGATGGAGGAAAAGGATGAGGTTAAGAAGATTGATGAGTTGCTTGTTGTGAAGGTTAAAGATACCGCGAATGCTGTGGTTGTTGATGAAGTCAAAGTAGGTGAAAATGAGGTGGTTGAGGTAGGAGGTGGGTTGAGTAAAGGGGATGATGAGAAGACGGATAAGATGGCGATGGATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTAGGAGAGGACACAATCAATATATACTAAAGAAGATTAGAAGGAACACTGCTGAAAATGGGGAAGATAAATCACCATCTCACATATAGTTTGATCGACTTTGAGTTTAATCATTCACGATTGAATTCCTTAACGTTGTTGTATGATCTGATCTAAAGTAGCTTTCCCCTTGCATAGTAGAACTAGCATTTATTCTTTACTTTTTTTCATCAGATCTACCGTATCCTGGTTTTACCAGAGAATAGTTTGACCAGAAACTAGAATAGATATCTATAGCCTAAATTTCGTAGTTAAATTGAGAGGACGGAGTCAGGAAACTAAACATGATATTTAGTACATTTATATCATAAGAAACTTGTGTTAGAATTTAGAAAAAGATACCTAGCATAAATTCAATAAGCAGTAAAGGACAGACCTTCAAACTACTTTTCGGTGTAGTTTGATTGCTAGTTATACAACAGGAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAAAAAATGGGAACCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320756" ref_strand="+" ref_description="SGN-U320756        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | acyl-CoA binding protein, putative / ACBP, putative, contains similarity to acyl-CoA binding protein 2 (Arabidopsis thaliana) gi:12039034:gb:AAG46057 | chr4:12565101-12568831 REVERSE | Aliases: T22A6.60, T22A6_60(evalue: 2e-29, score=126) genbank/nr: gi|45773894|gb|AAS76751.1| At4g24230 [Arabidopsis thaliana] >gi|42600567|gb|AAS21130.1| At4g24230 [Arabidopsis thaliana] (evalue: 6e-28, score=127)">
      <seq>ggataagatggcgatggatgaagatattgatgctgattgggagggaattgagagaagtgaattggaggaggaatttgctaaagctgttaactttgtggatgggggaaatggaaagaatagtggtatggagaatatggggagtgaattgatgatgcaattgtatggactccagaaaattgcaatcgaaggaccttgttacgaacctcaaccaatggcattgaaagtctatgcccgtgccaaatggaatgcgtggcagaaaatgggaagcatgaatcaggaggtggccatggagcagtatattaagcttttgtcagaccatgtccccaattggacacatcatagtaagaatgattgcgaagtagggtcttcagaaactaaaatgcctggagatccagatccaattcctgattcttctaatgatacaggcaaagatgaaaggacacaggaaacgaaccgtgctgcagaaggagataaaggtgaaaaggaataggtatgagaactcaccagcaggcataatgcaggtactgcttcaagaatttcaggtccttgcagctcataacacaacttggttctccctattgttcccttatcagattattatgcatctactctgcatatgtatatagttatttccgctaaataaaaacgacactatatttagagaaacaatgatctccttgtttcaatgactttttattatatgaagtgaatgataatctcattggttattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="73075" stop="77225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73375" g_stop="73617" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73618" i_stop="74314" i_length="697">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74315" g_stop="74417" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="346" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74418" i_stop="74509" i_length="92">
            <donor d_prob="0.767" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74510" g_stop="74601" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="438" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74602" i_stop="74720" i_length="119">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74721" g_stop="74766" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="484" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74767" i_stop="76667" i_length="1901">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76668" g_stop="76922" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="739" r_length="255" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-U320756" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73375" e_stop="73617"/>
          <exon e_start="74315" e_stop="74417"/>
          <exon e_start="74510" e_stop="74601"/>
          <exon e_start="74721" e_stop="74766"/>
          <exon e_start="76668" e_stop="76922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATAAGATGGCGATGGATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTAGGAGAGGACACAATCAATATATACTAAAGAAGATTAGAAGGAACACTGCTGAAAATGGGGAAGATAAATCACCATCTCACATATAGTTTGATCGACTTTGAGTTTAATCATTCACGATTGAATTCCTTAACGTTGTTGTATGATCTGATCTAAAGTAGCTTTCCCCTTGCATAGTAGAACTAGCATTTATTCTTTACTTTTTTTCATCAGATCTACCGTATCCTGGTTTTACCAGAGAATAGTTTGACCAGAAACTAGAATAGATATCTATAGCCTAAATTTCGTAGTTAAATTGAGAGGACGGAGTCAGGAAACTAAACATGATATTTAGTACATTTATATCATAAGAAACTTGTGTTAGAATTTAGAAAAAGATACCTAGCATAAATTCAATAAGCAGTAAAGGACAGACCTTCAAACTACTTTCGGGTGTAGTTTGATTGCTAGTTATACAACAGGAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAGGTTGTTAAATATTTTCCTAAAAATTTTTTTTGGATAGATTACTGAAAGATTTTCTTGAAACGTTACTCCAAATGGTTGATTTACTGTTGCAGAATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAGGTACTTCTATTTCACTTTCCTCATTATGTCCTCTGAAAGTTCCCACTGTATCGTTTCATTCGACTCTTGATTATTTTTGCTTATCTGCCTTTCTCACTAGCTTTTGCATGTATCTACAGGACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAGGTGATTCATACAATTTTCGGACTTTTGATTCTGTAGTGATGTTCACTTGTTTGGAGAATCCAAAGGATTTATGTTCCATGTTGAAACTTGGCCCTAAACCTGCTGTTGGTTGAATTTCAACTTCAAAGCTAGTAAAATATTCAACGTCGCATTGAACTTTTTATTAATCCTCTTGTTGCCAAAAAAAAATAAAAAAATCACTCCACATGATTGAAATTTCCTTGGGTAATTGCAAGTTAAACGATGCAACTGTTAACATCTAGGACAAGAACATAATGATCTAGTTAATATAAACATTTGCTGTTAATGCTAGATTCTGTGAGGTTTTGTCTCTTAGGTCGGACATCCTTTTAGGAGAATCCTAGTCTAAATTTTTGAGATTTGTCCTTTTGTCTATGAGGAACTTTTATAAGACATACTTTATATAATATCTGTGCTTTAATTGCATCTCAAAGAATATCATTCAAGAACATACTCACTACTTGACACTCTGTTATGTTAAACTCGTGAAGATCAGTCACATCAGTGTAGTTGGCTTCTTGTAACAGAACTATTAATCTTACAATTTGTATCACTCTGCCTAGTTATATGCAGTAATTAAGCCAGTTTACTGTAGACCGGTGCTACATCTTATGATCTCTATTTCCTTTCCTCGAGTAGTTATTTACATTTGACTGTTTACCATTTTCATCTATAGCCTGATAATTGAAGCTTTCTGGAATCTATGACAGCTTAAAAGAGTTGCTTCATTTTTCATTCTAATTCAGGCCTGATAAGTGGAGTTGTTTGAACATAACATAATTTTATAATTGGCTCCTTTTACTCTAGAGGTTTTATCTTTTGAATTCTTTTTAAATATAGGAACCAAGGATGTAAACTATTTATCTGTACTATGACATTACAAATCCATCGATTTATATCTGTTGTATTGATAATAACAGACTCATACAAGCACCCGAGAGAAAACACAAGATCCTGCTTTTGGTTCTGTAGAAGGTTCAGGAAGTAGGATGCTTGAGTTTATGATCTCAAAATCTCTTTCGTTTATTCTGGAAGAATGCTTCTACAACGCTCATCTTTTATACCACTTTATCAATTTTATGCAGGTTTTTGATAATGATAAGTAGTAGCGTTAGCTATTCAATGTCAAATTAATCCCAACTTTAGAGTTAGTAATGGCTCTGGGCCCTTAATATTTTTGGTGTTCAAGAACCATTTCTCCATCGAAATCAGTGTAAAGGAGAATTGGTTCTTGATTCTAGAAAGCCAAAATTACTGTCCACTATGATCCTAAAGACAAGTTTATTAAAAAAACTATGTAGGTGTTAAGGACGAGAACTTATTTTGGTAATTTTGGTCCAGCAAGAATTCAGTTTCTGTATGAAACAGATGTATATGCTTTGCAAGATAATGGCCATATAAAGACTAGGGGTCAAACTTGAGCCAAAGTAGAAGATATAGGATCTTCCCAGATTGTTCAAGTTTAATATGAAGGCTATGAGCATGAGGGTGTGGTTAATAGAAGCGATAGATGTCTTGGTTAATGATTGGACAACATTAAGATGCGAACATTCTCAAAGTTTAAGGGTGACTCGGAAGTTCGATTGAGAAGTATCTTGGGGCCTCTGATGCACTTTTAACTTTACTCCAATGACCTGTTCTTTTCACAACTTCGAATGGAATGTTACCTTATACATGAGCTAATTTCTACTTGGCTTTTATGATTGTTCATTTAGTAGGTATCTGAATGCTTTGTAATTTTCCCTCTTAGAGGTCAGATATGGAATATGTTTATAGTTCTTTAGTAATTCTTATATTGATGTTATGTTTGAATAAATCGATAGATAATTGTAGCAGAGATAAAACTTTGGTTTATAGCGATTTTCATGTGTTTCTTTCAGGAATAGGTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCGTTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGTTATTTCCGCTAAATAAAAACGACACTATATTTAGAGAAACAATGATCTCCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCATTGGTTATTATTATTATT</genome_strand>
        <mrna_strand>GGATAAGATGGCGATGGATGAAGATATTGATGCTGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAG............................................................................................AATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAG.......................................................................................................................GACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAGGTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCCTTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGTTATTTCCGCTAAATAAAAACGACACTATATTTAGAGAAACAATGATCTCCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCATTGGTTATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320755" ref_strand="+" ref_description="SGN-U320755        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | acyl-CoA binding protein, putative / ACBP, putative, contains similarity to acyl-CoA binding protein 2 (Arabidopsis thaliana) gi:12039034:gb:AAG46057 | chr4:12565101-12568856 REVERSE | Aliases: None(evalue: 6e-20, score=66.2) genbank/nr: gi|50726936|gb|AAT81164.1| membrane acyl-CoA binding protein [Agave americana] (evalue: 4e-17, score=68.2)">
      <seq>gatgaagatattgatgatgattgggagggaattgagagaactgaattggaggaggaatttgctaaagctgttaactttgtggatgggggaaatggaaagaatagtggtatggagaatatggggagtgaattgatgatgcaattgtatggactccagaaaattgcaatcgaaggaccttgttacgaacctcaaccaatggcattgaaagtctatgcccgtgccaaatggaatgaaagctgctttctgtaagtgatggaggacaataattccattgtgcaaggaatgcgtggcagaaaatgggaagcatgaatcaggaggtggccatggagcagtatattaagcttttgtcagaccatgtccccaattggacacatcatagtaagaatgattgcgaagtagggtcttcagaaactaaaatgcctggagatccagatccaattcctgattcttctaatgatacaggcaaagatgaaaggacacaggaaacgaaccgtgctgcagaaggagataaaggtgaaaaggaataggtatgagaactcaccagcaggcataatgcaggtactgcttcaagaatttcaggtcattgcagctcataacacaacttggttctccctattgttcccttatcagattattatgcatctactctgcatatgtatatagntatttccgctaaataaaaacgacactatatttagagaacaatgatctncttgtttcaatgactttttattatatgaagtgaatgataatctcattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="73091" stop="77209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73391" g_stop="73617" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73618" i_stop="74261" i_length="644">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.048" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74262" g_stop="74417" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="383" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74418" i_stop="74509" i_length="92">
            <donor d_prob="0.767" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74510" g_stop="74601" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="475" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74602" i_stop="74720" i_length="119">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74721" g_stop="74766" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="521" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74767" i_stop="76667" i_length="1901">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76668" g_stop="76909" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="762" r_length="241" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-U320755" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73391" e_stop="73617"/>
          <exon e_start="74262" e_stop="74417"/>
          <exon e_start="74510" e_stop="74601"/>
          <exon e_start="74721" e_stop="74766"/>
          <exon e_start="76668" e_stop="76909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTAGGAGAGGACACAATCAATATATACTAAAGAAGATTAGAAGGAACACTGCTGAAAATGGGGAAGATAAATCACCATCTCACATATAGTTTGATCGACTTTGAGTTTAATCATTCACGATTGAATTCCTTAACGTTGTTGTATGATCTGATCTAAAGTAGCTTTCCCCTTGCATAGTAGAACTAGCATTTATTCTTTACTTTTTTTCATCAGATCTACCGTATCCTGGTTTTACCAGAGAATAGTTTGACCAGAAACTAGAATAGATATCTATAGCCTAAATTTCGTAGTTAAATTGAGAGGACGGAGTCAGGAAACTAAACATGATATTTAGTACATTTATATCATAAGAAACTTGTGTTAGAATTTAGAAAAAGATACCTAGCATAAATTCAATAAGCAGTAAAGGACAGACCTTCAAACTACTTTCGGGTGTAGTTTGATTGCTAGTTATACAACAGGAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAGGTTGTTAAATATTTTCCTAAAAATTTTTTTTGGATAGATTACTGAAAGATTTTCTTGAAACGTTACTCCAAATGGTTGATTTACTGTTGCAGAATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAGGTACTTCTATTTCACTTTCCTCATTATGTCCTCTGAAAGTTCCCACTGTATCGTTTCATTCGACTCTTGATTATTTTTGCTTATCTGCCTTTCTCACTAGCTTTTGCATGTATCTACAGGACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAGGTGATTCATACAATTTTCGGACTTTTGATTCTGTAGTGATGTTCACTTGTTTGGAGAATCCAAAGGATTTATGTTCCATGTTGAAACTTGGCCCTAAACCTGCTGTTGGTTGAATTTCAACTTCAAAGCTAGTAAAATATTCAACGTCGCATTGAACTTTTTATTAATCCTCTTGTTGCCAAAAAAAAATAAAAAAATCACTCCACATGATTGAAATTTCCTTGGGTAATTGCAAGTTAAACGATGCAACTGTTAACATCTAGGACAAGAACATAATGATCTAGTTAATATAAACATTTGCTGTTAATGCTAGATTCTGTGAGGTTTTGTCTCTTAGGTCGGACATCCTTTTAGGAGAATCCTAGTCTAAATTTTTGAGATTTGTCCTTTTGTCTATGAGGAACTTTTATAAGACATACTTTATATAATATCTGTGCTTTAATTGCATCTCAAAGAATATCATTCAAGAACATACTCACTACTTGACACTCTGTTATGTTAAACTCGTGAAGATCAGTCACATCAGTGTAGTTGGCTTCTTGTAACAGAACTATTAATCTTACAATTTGTATCACTCTGCCTAGTTATATGCAGTAATTAAGCCAGTTTACTGTAGACCGGTGCTACATCTTATGATCTCTATTTCCTTTCCTCGAGTAGTTATTTACATTTGACTGTTTACCATTTTCATCTATAGCCTGATAATTGAAGCTTTCTGGAATCTATGACAGCTTAAAAGAGTTGCTTCATTTTTCATTCTAATTCAGGCCTGATAAGTGGAGTTGTTTGAACATAACATAATTTTATAATTGGCTCCTTTTACTCTAGAGGTTTTATCTTTTGAATTCTTTTTAAATATAGGAACCAAGGATGTAAACTATTTATCTGTACTATGACATTACAAATCCATCGATTTATATCTGTTGTATTGATAATAACAGACTCATACAAGCACCCGAGAGAAAACACAAGATCCTGCTTTTGGTTCTGTAGAAGGTTCAGGAAGTAGGATGCTTGAGTTTATGATCTCAAAATCTCTTTCGTTTATTCTGGAAGAATGCTTCTACAACGCTCATCTTTTATACCACTTTATCAATTTTATGCAGGTTTTTGATAATGATAAGTAGTAGCGTTAGCTATTCAATGTCAAATTAATCCCAACTTTAGAGTTAGTAATGGCTCTGGGCCCTTAATATTTTTGGTGTTCAAGAACCATTTCTCCATCGAAATCAGTGTAAAGGAGAATTGGTTCTTGATTCTAGAAAGCCAAAATTACTGTCCACTATGATCCTAAAGACAAGTTTATTAAAAAAACTATGTAGGTGTTAAGGACGAGAACTTATTTTGGTAATTTTGGTCCAGCAAGAATTCAGTTTCTGTATGAAACAGATGTATATGCTTTGCAAGATAATGGCCATATAAAGACTAGGGGTCAAACTTGAGCCAAAGTAGAAGATATAGGATCTTCCCAGATTGTTCAAGTTTAATATGAAGGCTATGAGCATGAGGGTGTGGTTAATAGAAGCGATAGATGTCTTGGTTAATGATTGGACAACATTAAGATGCGAACATTCTCAAAGTTTAAGGGTGACTCGGAAGTTCGATTGAGAAGTATCTTGGGGCCTCTGATGCACTTTTAACTTTACTCCAATGACCTGTTCTTTTCACAACTTCGAATGGAATGTTACCTTATACATGAGCTAATTTCTACTTGGCTTTTATGATTGTTCATTTAGTAGGTATCTGAATGCTTTGTAATTTTCCCTCTTAGAGGTCAGATATGGAATATGTTTATAGTTCTTTAGTAATTCTTATATTGATGTTATGTTTGAATAAATCGATAGATAATTGTAGCAGAGATAAAACTTTGGTTTATAGCGATTTTCATGTGTTTCTTTCAGGAATAGGTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCGTTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGTTATTTCCGCTAAATAAAAACGACACTATATTTAGAGAAACAATGATCTCCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCATTGGT</genome_strand>
        <mrna_strand>GATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAACTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAG............................................................................................AATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAG.......................................................................................................................GACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAGGTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCATTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGNTATTTCCGCTAAATAAAAACGACACTATATTTAGAG-AACAATGATCTNCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329595" ref_strand="+" ref_description="SGN-U329595        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>ggcacgagattccacaagtgtctgcagggaggaggaactaagaaggaacaatactggtatctcatgtaaaataaggacaatctttactactaaagttagtttaccttacacaattgtaagcaacaaagtaggtccagaaccataaaggatataataataataataaccaatgagattatcattcccttcatataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="77368" stop="70090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77074" g_stop="76865" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-U329595" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77074" e_stop="76865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTAATATTCCACAAGTGTCTGCAGGGAGGAGGAACTAAGAAGGAACAATACTGGTATCTCATGTAAAATAAGGACAATCTTTACTACTAAAGTTAGTTTACCTTACACAATTGTAAGCAACAAAGTAGGTCCAGAACCATAAAGGATATAATAATAATAATAACCAATGAGATTATCATTCACTTCATATAATAAAAAGTCATTGAA</genome_strand>
        <mrna_strand>GGCACGAGATTCCACAAGTGTCTGCAGGGAGGAGGAACTAAGAAGGAACAATACTGGTATCTCATGTAAAATAAGGACAATCTTTACTACTAAAGTTAGTTTACCTTACACAATTGTAAGCAACAAAGTAGGTCCAGAACCATAAAGGATATAATAATAATAATAACCAATGAGATTATCATTCCCTTCATATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322005" ref_strand="+" ref_description="SGN-U322005        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | cucumisin-like serine protease (ARA12), Asp48; almost identical to cucumisin-like serine protease (ARA12) GI:3176874 from (Arabidopsis thaliana) | chr5:26889117-26891805 REVERSE | Aliases: K8K14.8, K8K14_8(evalue: 0, score=957) genbank/nr: gi|1771160|emb|CAA67429.1| SBT1 [Lycopersicon esculentum] >gi|3687305|emb|CAA06999.1| subtilisin-like protease [Lycopersicon esculentum] (evalue: 0, score=1432)">
      <seq>ctagcattacatatcatagtcagttagagcctatcactcaaaactccagcccatctccaccacaggaggaaaaaaaaaaaagcttttcttttcagtagagatttaactttcaccttcgacactaagaactcacataaagatggaaagactcaggctcatgtttcttttaatactaatggtagtgttgtttcatgtgtttgttgatgcaagacagaaccagaagaagacttatataattcacatggataagttcaacatgcctgctgattttgatgatcatactcagtggtatgactcctcattgaagtcagtatccaagagcgccaacatgctttacacctacaacagtgtcatccatggctactcaacacagctaacagctgatgaagccaaagcacttgcacagcaaccgggaattctctcggtccacgaggaagtgatatacgagcttcacaccactcgatcccctacgtttctgggacttgaaggacgtgaaagtagatcattctttcctcagactgaagcaaggagtgaggtcattattggtgtgctggacacaggtgtttggcctgaatcaaaaagttttgatgacactggactaggtccagtccctgcgagctggaagggtaagtgtcaaactggcaagaatttcgacgcatcaagctgtaatcggaaacttattggtgcgaggtttttctcacaaggttatgaagcagcttttggggcaatcgatgagaccatcgaatccaagtcaccaagggacgatgaaggccatggcacacacactgcaactacagcagctggctcggttgtaaccggagctagcctcttgggttatgcaactggtacagcacgtgggatggcttcacacgcaagggtggcagcgtacaaggtatgttggaccggaggatgttttagcagcgacatactggcagggatggaccaggctgtcatagatggtgtaaatgtgctctcactgtcccttggtggcacaatttctgattatcatagggacatagttgcaatcggagcattttctgcagcatctcaagggatctttgtctcatgctcagcggggaatggtggtccaagctctgggacgctatccaacgttgcaccatggataactactgtaggtgctggaaccatggaccgtgaatttccagcatacattggcattggaaatgggaaaaaactcaatggagtatcactttacagtggaaaggcattgcctagttctgtgatgccactggtgtatgctggaaatgtcagccaatcatctaatggaaatttatgcaccagtggtagtctaattccagaaaaagttgctggaaaaattgtcgtctgtgaccgggggatgaatgcaagggcacaaaagggtttggttgtgaaggatgctggtggaatagggatgattctggcaaacacagacacttacggagatgagttggttgctgatgcacacctcatacctacagctgcagttggtcaaactgcgggcaacttgatcaagcagtacatagcttctaacagcaatccaactgccacaattgcatttggaggaaccaagttgggtgttcaaccatcgccagttgttgcagcttttagttccagagggccaaacccaatcacaccagatgtactcaaacctgatttgatagcaccaggtgtcaatattcttgctggctggacagggaaagttggaccaactggcttgcaagaagacaccaggaatgtaggcttcaacatcatctctggaacttccatgtcatgtccccatgtaagtgggctagcagcactactcaaagctgcccatccagaatggagtccagcagctataaggtcagcactgatgactacaagttatagcacatacaaaaacggaaaaacaatcgaggatgttgcaacaggaatgtcatctacaccatttgattatggtgctggacatgtgaatccaacagcagctgtcagtcctggtttagtgtatgatctaacagttgatgactatataaactttctatgtgccttggactacagcccgagtatgatcaaggtcattgcaaaaagagacatctcctgtgacgaaaataaggagtatagagttgctgatcttaattacccatctttttccattcctatggaaacggcctggggtgaacatgcagatagtagtacccccaccgtgaccagatacacaaggactctaacaaatgtgggaaacccagctacatacaaggcctcagtctcttctgaaacacaggacgtgaagattctggttgagccacaaacacttactttcagccgaaagaacgaaaagaaaacctacactgtgacattcactgctacttccaagccatcaggcacaaccagcttcgctcgactggagtggtcagatggacaacacgttgttgcaagcccaattgctttcagctggacatgattttgctagttctaagtcattcaccacaaatgtacaagtgctaatagtcctttttaaataatcactagtgtgcagcagttactcctctaatatttcaccaactgaacaagtatcctgacctataattaagaagcctaggcaattctaggcaatgttggttgatttgcccagcaaaaggctggtgctgtatttgccagatataattatgtactgaaccacacaatacaggtggatattatttggctttatttcttgtctcnnaaaaaaaaaaaaaaaaaaaaaaaaacccccgggggggggccgggaccccatttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="82541" stop="85838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82841" g_stop="85540" g_length="2700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2700" r_length="2700" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2708" polyA_stop="2727"/>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-U322005" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2700</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82841" e_stop="85540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCATTACATATCATAGTCAGTTAGAGCCTATCACTCAAAACTCCAGCCCATCTCCACCACAGGAGGAAAAAAAAAAAAGCTTTTCTTTTCAGTAGAGATTTAACTTTCACCTTCGACACTAAGAACTCACATAAAGATGGAAAGACTCAGGCTCATGTTTCTTTTAATACTAATGGTAGTGTTGTTTCATGTGTTTGTTGATGCAAGACAGAACCAGAAGAAGACTTATATAATTCACATGGACAAGTTCAACATGCCTGCTGATTTTGATGATCATACTCAGTGGTATGACTCATCATTGAAGTCAGTATCCAAGAGCGCCAACATGCTTTACACCTACAACAGTGTCATCCATGGCTACTCAACACAGCTAACAGCTGATGAAGCCAAAGCACTTGCACAGCAACCGGGAATTCTCTTGGTCCACGAGGAAGTGATATACGAGCTTCACACCACTCGATCCCCTACGTTTCTGGGACTTGAAGGACGTGAAAGTAGATCATTCTTTCCTCAGACTGAAGCAAGGAGTGAGGTCATTATTGGTGTGCTGGACACAGGTGTTTGGCCTGAATCAAAAAGTTTTGATGACACTGGACTAGGTCCAGTCCCTGCGAGCTGGAAGGGTAAGTGTCAAACTGGCAAGAACTTCGACGCATCAAGCTGTAATCGGAAACTTATTGGTGCGAGGTTTTTCTCACAAGGTTATGAAGCAGCTTTTGGGGCAATCGATGAGACCATTGAATCCAAGTCACCAAGGGACGATGAAGGCCATGGCACACACACTGCAACTACAGCAGCTGGCTCGGTTGTAACCGGAGCTAGCCTCTTGGGTTATGCAACTGGTACAGCACGTGGGATGGCTTCACACGCAAGGGTGGCAGCGTACAAGGTATGTTGGACCGGAGGATGTTTTAGCAGCGACATACTGGCAGGGATGGACCAGGCTGTCATAGATGGTGTAAATGTGCTCTCACTGTCCCTTGGTGGCACAATTTCTGATTATCATAGGGACATAGTTGCAATCGGAGCATTTTCTGCAGCATCTCAAGGGATCTTTGTCTCATGCTCAGCGGGGAATGGTGGTCCAAGCTCTGGGACGCTATCCAACGTTGCACCATGGATAACTACTGTAGGTGCTGGAACCATGGACCGTGAATTTCCAGCATACATTGGCATTGGAAATGGGAAAAAACTCAATGGAGTATCACTTTACAGTGGAAAGGCATTGCCTAGTTCTGTGATGCCACTGGTGTATGCTGGAAATGTCAGCCAATCATCTAATGGAAATTTATGCACCAGTGGTAGTCTAATTCCAGAAAAAGTTGCTGGAAAAATTGTCGTCTGTGACCGGGGGATGAATGCAAGGGCACAAAAGGGTTTGGTTGTGAAGGATGCTGGTGGAATAGGGATGATTCTGGCAAACACAGACACTTACGGAGATGAGTTGGTTGCTGATGCACACCTCATACCTACAGCTGCAGTTGGTCAAACTGCGGGCAACTTGATCAAGCAGTACATAGCTTCTAACAGCAATCCAACTGCCACAATTGCATTTGGAGGAACCAAGTTGGGTGTTCAACCATCGCCAGTTGTTGCAGCTTTTAGTTCCAGAGGGCCAAACCCAATCACACCAGATGTACTCAAACCTGATTTGATAGCACCAGGTGTCAATATTCTTGCTGGCTGGACAGGGAAAGTTGGACCAACTGGCTTGCAAGAAGACACCAGGAATGTAGGCTTCAACATCATCTCTGGAACTTCCATGTCATGTCCCCATGTAAGTGGGCTAGCAGCACTACTCAAAGCTACCCATCCAGAATGGAGTCCAGCAGCTATAAGGTCAGCACTGATGACTACAAGTTATAGCACATACAAAAACGGAAAAACAATCGAGGATGTTGCAACAGGAATGTCATCTACACCATTTGATTATGGTGCTGGACATGTGAATCCAACAGCAGCTGTCAGTCCTGGTTTAGTGTATGATCTAACAGTTGATGACTATATAAACTTTCTATGTGCCTTGGACTACAGCCCGAGTATGATCAAGGTCATTGCAAAAAGAGACATCTCCTGTGACGAAAATAAGGAGTATAGAGTTGCTGATCTTAATTACCCATCTTTTTCCATTCCTATGGAAACGGCCTGGGGTGAACATGCAGATAGTAGTACCCCCACCGTGACCAGATACACAAGGACTCTAACAAATGTGGGAAACCCAGCTACATACAAGGCCTCAGTCTCTTCTGAAACACAGGACGTGAAGATTCTGGTTGAGCCACAAACACTTACTTTCAGCCGAAAGAACGAAAAGAAAACCTACACTGTGACATTCACTGCTACTTCCAAGCCATCAGGCACAACCAGCTTCGCTCGACTGGAGTGGTCAGATGGACAACACGTTGTTGCAAGCCCAATTGCTTTCAGCTGGACATGATTCTGCTAGTTCTAAGTCATTCACCACAAATGTACAAGTGCTAATAGTCCTTTTTAAATAATTACTAGTGTGCAGCAGTTACTCCTCTAATATTTCACCAACTGAACAAGTATCCTGACCTATAATTAAGAAGCCTAGGCAATTCTAGGCAATGTTGGTTGATTTGCCCAGCAAAAGGCTGGTGCTGTATTTGCCAGATATAATTATGTACTGAACCACACAATACAGGTGGATATTATTTGGCTTTATTTCTTGTCTTA</genome_strand>
        <mrna_strand>CTAGCATTACATATCATAGTCAGTTAGAGCCTATCACTCAAAACTCCAGCCCATCTCCACCACAGGAGGAAAAAAAAAAAAGCTTTTCTTTTCAGTAGAGATTTAACTTTCACCTTCGACACTAAGAACTCACATAAAGATGGAAAGACTCAGGCTCATGTTTCTTTTAATACTAATGGTAGTGTTGTTTCATGTGTTTGTTGATGCAAGACAGAACCAGAAGAAGACTTATATAATTCACATGGATAAGTTCAACATGCCTGCTGATTTTGATGATCATACTCAGTGGTATGACTCCTCATTGAAGTCAGTATCCAAGAGCGCCAACATGCTTTACACCTACAACAGTGTCATCCATGGCTACTCAACACAGCTAACAGCTGATGAAGCCAAAGCACTTGCACAGCAACCGGGAATTCTCTCGGTCCACGAGGAAGTGATATACGAGCTTCACACCACTCGATCCCCTACGTTTCTGGGACTTGAAGGACGTGAAAGTAGATCATTCTTTCCTCAGACTGAAGCAAGGAGTGAGGTCATTATTGGTGTGCTGGACACAGGTGTTTGGCCTGAATCAAAAAGTTTTGATGACACTGGACTAGGTCCAGTCCCTGCGAGCTGGAAGGGTAAGTGTCAAACTGGCAAGAATTTCGACGCATCAAGCTGTAATCGGAAACTTATTGGTGCGAGGTTTTTCTCACAAGGTTATGAAGCAGCTTTTGGGGCAATCGATGAGACCATCGAATCCAAGTCACCAAGGGACGATGAAGGCCATGGCACACACACTGCAACTACAGCAGCTGGCTCGGTTGTAACCGGAGCTAGCCTCTTGGGTTATGCAACTGGTACAGCACGTGGGATGGCTTCACACGCAAGGGTGGCAGCGTACAAGGTATGTTGGACCGGAGGATGTTTTAGCAGCGACATACTGGCAGGGATGGACCAGGCTGTCATAGATGGTGTAAATGTGCTCTCACTGTCCCTTGGTGGCACAATTTCTGATTATCATAGGGACATAGTTGCAATCGGAGCATTTTCTGCAGCATCTCAAGGGATCTTTGTCTCATGCTCAGCGGGGAATGGTGGTCCAAGCTCTGGGACGCTATCCAACGTTGCACCATGGATAACTACTGTAGGTGCTGGAACCATGGACCGTGAATTTCCAGCATACATTGGCATTGGAAATGGGAAAAAACTCAATGGAGTATCACTTTACAGTGGAAAGGCATTGCCTAGTTCTGTGATGCCACTGGTGTATGCTGGAAATGTCAGCCAATCATCTAATGGAAATTTATGCACCAGTGGTAGTCTAATTCCAGAAAAAGTTGCTGGAAAAATTGTCGTCTGTGACCGGGGGATGAATGCAAGGGCACAAAAGGGTTTGGTTGTGAAGGATGCTGGTGGAATAGGGATGATTCTGGCAAACACAGACACTTACGGAGATGAGTTGGTTGCTGATGCACACCTCATACCTACAGCTGCAGTTGGTCAAACTGCGGGCAACTTGATCAAGCAGTACATAGCTTCTAACAGCAATCCAACTGCCACAATTGCATTTGGAGGAACCAAGTTGGGTGTTCAACCATCGCCAGTTGTTGCAGCTTTTAGTTCCAGAGGGCCAAACCCAATCACACCAGATGTACTCAAACCTGATTTGATAGCACCAGGTGTCAATATTCTTGCTGGCTGGACAGGGAAAGTTGGACCAACTGGCTTGCAAGAAGACACCAGGAATGTAGGCTTCAACATCATCTCTGGAACTTCCATGTCATGTCCCCATGTAAGTGGGCTAGCAGCACTACTCAAAGCTGCCCATCCAGAATGGAGTCCAGCAGCTATAAGGTCAGCACTGATGACTACAAGTTATAGCACATACAAAAACGGAAAAACAATCGAGGATGTTGCAACAGGAATGTCATCTACACCATTTGATTATGGTGCTGGACATGTGAATCCAACAGCAGCTGTCAGTCCTGGTTTAGTGTATGATCTAACAGTTGATGACTATATAAACTTTCTATGTGCCTTGGACTACAGCCCGAGTATGATCAAGGTCATTGCAAAAAGAGACATCTCCTGTGACGAAAATAAGGAGTATAGAGTTGCTGATCTTAATTACCCATCTTTTTCCATTCCTATGGAAACGGCCTGGGGTGAACATGCAGATAGTAGTACCCCCACCGTGACCAGATACACAAGGACTCTAACAAATGTGGGAAACCCAGCTACATACAAGGCCTCAGTCTCTTCTGAAACACAGGACGTGAAGATTCTGGTTGAGCCACAAACACTTACTTTCAGCCGAAAGAACGAAAAGAAAACCTACACTGTGACATTCACTGCTACTTCCAAGCCATCAGGCACAACCAGCTTCGCTCGACTGGAGTGGTCAGATGGACAACACGTTGTTGCAAGCCCAATTGCTTTCAGCTGGACATGATTTTGCTAGTTCTAAGTCATTCACCACAAATGTACAAGTGCTAATAGTCCTTTTTAAATAATCACTAGTGTGCAGCAGTTACTCCTCTAATATTTCACCAACTGAACAAGTATCCTGACCTATAATTAAGAAGCCTAGGCAATTCTAGGCAATGTTGGTTGATTTGCCCAGCAAAAGGCTGGTGCTGTATTTGCCAGATATAATTATGTACTGAACCACACAATACAGGTGGATATTATTTGGCTTTATTTCTTGTCTCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326468" ref_strand="+" ref_description="SGN-U326468        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | ankyrin repeat family protein, contains ankyrin repeats, Pfam:PF00023 | chr5:26364819-26366270 REVERSE | Aliases: K14B20.3, K14B20_3(evalue: 5e-131, score=464) genbank/nr: gi|42568802|ref|NP_201387.2| ankyrin repeat family protein [Arabidopsis thaliana] (evalue: 3e-129, score=464)">
      <seq>cgaggtcgtaaaggctctccttgatgctagtgccccatggaatgccctgaccccttccaatgtctccgccggcgacttcgccatggatgctggtcatcaagaggcttttgacgttcttctcaataccgcaatccaggcagaattgatccttggaacaattgcaaggaaggacaatgctaaggggaactcagatgggaactatttagatgatagagtcacttttagtgaagataaaattatggactctgatagtaaggctattatgatggcttgggagaagccattgatggaagctcatgcgaaagctgtctgctcaaatggtggtcacatactgaacattggatttgggatgggccttgtagatacagccatacaacaatattcacctttatcacacactattattgaagctcatccagaggtctatgatcgtatgatgcgcgcaggttggggtgagaaggagaatgtgaaaatcatatttggtcggtggcaagatgtcatttctaaacttgaaacctatgatggaatattttttgatacttatggggagtattatgaagatatgcgggaatttcatcaacatcttcctagattattgaagccaggtggtatatattcattttttaatggtctatgtggaggtaatcccttctttcatatcgtatactgtcagctagtctctctaaaacttgaaagcttgggatattctacgcagctgataccattaccagtgaaggattgtttaggtgaatctgtgtgggagggtgttaaacaaaagtactggcagttagatacgtattaccttcctgtttgtcagtctatgagcgaatcagaatgatattattggacccctgataatgtggcatcaaatgaaaaagcctcctaggatcttcttcttttcttgttgtgtattcattttgtaacgagtttggtagtattttcacatcttcgattttttgatatttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="89777" stop="70090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89477" g_stop="89350" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89349" i_stop="88227" i_length="1123">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88226" g_stop="87831" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="524" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87830" i_stop="86962" i_length="869">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86961" g_stop="86522" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="964" r_length="440" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86521" i_stop="86402" i_length="120">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86401" g_stop="86373" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="965" r_stop="993" r_length="29" r_score="0.655"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-U326468" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>993</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89477" e_stop="89350"/>
          <exon e_start="88226" e_stop="87831"/>
          <exon e_start="86961" e_stop="86522"/>
          <exon e_start="86401" e_stop="86373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGTCGTAAAGGCTCTCCTTGATGCTAGTGCCCCATGGAATGCCCTGACCCCTTCCAATGTCTCCGCCGGCGACTTCGCCATGGATGCTGGTCATCAAGAGGCTTTTGACGTTCTTCTCAATACCGGTGCTTACTTTTAATCCTCGCAATCTCTTCCTTATGTTTTAGAGTTAGCTTTGGCTACTCAATAGTACATTATACGCATCATTTAAATTTTGTGTTGTAAATTTATTCAAATTGTTAATGCGTGACATTACGTAACAACAGAAATCCATACCAAATACTACACTATCCAATATAATAGATTATTATGAAACTATATGTAACAACTATCCAAACAGAATGGAATTCTATAAGACTTGTGTTTGGTTTGAGGTATAAAGAAATATATTAGTAGAGTAACTGCTGTATTACTGACACAAATTCTAGTTTTCTGATAATACATCTGCGAATTAATAATATAACTCTACTTTGCTAATACAATGTCTGACTTTCTATACGAAACTTCACATAAGTAATAACAGCATAACTAGTTTTGAGAAAAATTATGTATTATTCCAGATAGGATGTGGAATAATAATATGTGCATCTGAAGAAGTAGCTGTATAAGATGTACATCACAAAGATACTCTTAATGTAAGAGGACTTGTTTTGATATCACATTTCCGGCATAATAATCCCCATGTTGTCATCCAATGCATGATAATTCATGTACTAATACGGAACGAAACAACCTGTTAGTCTATCTTATTTAGCTGTATAATTCCTCTTGTTTTAAGCATAAGGAAAATCTGATCTCTCTTCATGTTCATATGATGATGTTTTACTCATCACATAATTTTAAGATATTAGTTGACATCTATATAGTTAACTAATGGTTGAAAATTGTTTGATGAAGAATGTTATGAGTGGATGGTGTAAACATATGGAAAATCACAAATGGAAAAGTGTGATATAACTTGGGACAAAACGACTGATTCGTATATTGTGCAGAAAATAATAATTAAGAGCAAATTGTTATGTTTCATTAATTTTTTATTATGTTGTTGTAATTGTTGTTTTTATTGTTCCCAATATGCCTGAGAGCCAACATTATATTAAAATTTGAAATTTTGCAGAGTAAAAAACTAGTATCAGAAAAGGCAACTGAAGCTGTTAATCTTCTTTATTCAGTGTGTAGTTCAACTAAAAGTTTGAGGCTGTTTAGCTTAATATTTCTGATCAAACATGTTTATTATTCAATATGTAGCAATCCAGGCAGAATTGATCCTTGGAACAATTGCAAGGAAGGACAATGCTAAGGGGAACTCAGATGGGAACTATTTAGATGATAGAGTCACTTTTAGTGAAGATAAAATTATGGACTCTGATAGTAAGGCTATTATGATGGCTTGGGAGAAGCCATTGATGGAAGCTCATGCGAAAGCTGTCTGCTCAAATGGTGGTCACATACTGAACATTGGATTTGGGATGGGCCTTGTAGATACAGCCATACAACAATATTCACCTTTATCACACACTATTATTGAAGCTCATCCAGAGGTCTATGATCGTATGATGCGCGCAGGTTGGGGTGAGAAGGAGAATGTGAAAATCATATTTGGTCGGTGGCAAGATGTCATTTCTAAACTTGAAACCTATGATGGTAAACTTCCACTTCTTCCCTTTCTATTTTTAAAAGAAGAAAAACCCCTTTATGCTGGTAATACTTCTGATTTTTAGTGTCTTGTTAGTGCATTGCTTGTTTTGATCATGAGATTCTTCCCTATACATTTTCTTTTCTGGTAAGTTTAGAAAATCACTCTCTCATCATGCCTATGAAGTATGAATGACAATATGAGAATATACTACTTCAAGGTTTCATTGCACTTAGTTTAGCGATGAAAACATGAAAACCTTTCAGGAAAACATATCAGTTTCAAGTAGAATTTCCTCTTTTTCCTCCATTCAAATTACTGCTCAATATCCCAAGTCAATAGTTGGTGCATGATTCTTATTGTCATCAATATGATACATTATTCTGAAGTTTGTACTGGTGGTTGTTAATACATTTTCTTCAAAAAATTTATGCACTATGCACAATTTTTTGTTTTTTTGTATGTTTACAGGCACTGCTGTAACATAAAATTCATTTCTCTCTAAAAACTGTGTAGGAAGTGTTTTTTAATCTTCACAAAGGAGCAATTTTCTTTTGAGCTCCTAGCTATTGATTTCATATGCTGATTCTTGCTGTTCCAATGACATAAATGCCTCACAAAACAACATACAATGCTTTTCATAACTCCGCTTGCTAGCAAAAGCAATAAGACAAATAATAAGAGTCATGAGTGTCAAGTTGGCCTACTTCTGTAACTTGATTAAGCAAAAAATTTCACTTATCCAACATTGTAATAATTGAAGATGTCAGTTAATTATATAAGCTCGGTTCTCTTTTGTTAGATTTAAGTTTAGATTCTATCTGTTGTCTTCTTTTTTCATCTTTATCTCTTAATGTGTATCTACTCTGTTCTGCAGGAATATTTTTTGATACTTATGGGGAGTATTATGAAGATATGCGGGAATTTCATCAACATCTTCCTAGATTATTGAAGCCAGGTGGTATATATTCATTTTTTAATGGTCTATGTGGAGGTAATCCCTTCTTTCATATCGTATACTGTCAGCTAGTCTCTCTAGAACTTGAGAGCTTGGGATATTCTACGCAGCTGATACCATTACCAGTGAAGGATTGTTTAGGTGAATCTGTGTGGGAGGGTGTTAAACAGAAGTACTGGCAGTTAGATACGTATTACCTTCCTGTTTGTCAGTCTATGAGCGAATCAGAATGATATTATTGGACCACTGATAATGTGGCATCAGATGAAAAAGCCTCCTAGGATCTTCTTCTTTTCTTGTTGTGTATTCATTTTGTAACGAGTTTGGTAGTATTTTCACATCTTCGATTTTTAGATATTATTATGCTGGCATGCTGCTTATATTTTTTTTGGAATTGGGATGATTTGTGTGAATCAGTGCATAGATGCTATTACAACACCAACATACCCAGTGTAGTCCCATAAATGCATAAATGCTATTGCCAAGAAAAAAACCCAAAGAAAAGAGA</genome_strand>
        <mrna_strand>CGAGGTCGTAAAGGCTCTCCTTGATGCTAGTGCCCCATGGAATGCCCTGACCCCTTCCAATGTCTCCGCCGGCGACTTCGCCATGGATGCTGGTCATCAAGAGGCTTTTGACGTTCTTCTCAATACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCCAGGCAGAATTGATCCTTGGAACAATTGCAAGGAAGGACAATGCTAAGGGGAACTCAGATGGGAACTATTTAGATGATAGAGTCACTTTTAGTGAAGATAAAATTATGGACTCTGATAGTAAGGCTATTATGATGGCTTGGGAGAAGCCATTGATGGAAGCTCATGCGAAAGCTGTCTGCTCAAATGGTGGTCACATACTGAACATTGGATTTGGGATGGGCCTTGTAGATACAGCCATACAACAATATTCACCTTTATCACACACTATTATTGAAGCTCATCCAGAGGTCTATGATCGTATGATGCGCGCAGGTTGGGGTGAGAAGGAGAATGTGAAAATCATATTTGGTCGGTGGCAAGATGTCATTTCTAAACTTGAAACCTATGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATTTTTTGATACTTATGGGGAGTATTATGAAGATATGCGGGAATTTCATCAACATCTTCCTAGATTATTGAAGCCAGGTGGTATATATTCATTTTTTAATGGTCTATGTGGAGGTAATCCCTTCTTTCATATCGTATACTGTCAGCTAGTCTCTCTAAAACTTGAAAGCTTGGGATATTCTACGCAGCTGATACCATTACCAGTGAAGGATTGTTTAGGTGAATCTGTGTGGGAGGGTGTTAAACAAAAGTACTGGCAGTTAGATACGTATTACCTTCCTGTTTGTCAGTCTATGAGCGAATCAGAATGATATTATTGGACCCCTGATAATGTGGCATCAAATGAAAAAGCCTCCTAGGATCTTCTTCTTTTCTTGTTGTGTATTCATTTTGTAACGAGTTTGGTAGTATTTTCACATCTTCGATTTTTTGATATT........................................................................................................................TAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343446" ref_strand="+" ref_description="SGN-U343446        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:9640185-9641853 REVERSE | Aliases: T22C5.15, T22C5_15(evalue: 5e-19, score=91.7) genbank/nr: t-snare(evalue: 2e-26, score=122)">
      <seq>tacaatagtaaatctgctgacgatgcaagagatagacggcatgaattttttattgcaatcgacaatcaaattaggaaagttgagaaatctcttaatgaatcagctgtttcacaaggcaaaccaccacttccatgggtgcggttggatgagggagaagtcgatgaacttgctgcatttctctctggcccatccacctcttctgcaggcataacccatgcaaaagtacatggagtggagctgcaagttcccaagtgggaagagaatgtaaatcaatcacttcttgagtgttcccagaatcctcctcattcggaggaaggtgttctangtgaggccatagacgagaagtttttaggccatcggagaacagcaagtgctagtgctgacattggtgcatggcagattgcacttggcaatgatatttccatcaaagaacctgcatcccctcctcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="95166" stop="96215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95466" g_stop="95915" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-U343446" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95466" e_stop="95915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATAGTAAATCTGCTGACGATGCAAGAGATAGACACCATGAATTTTTTATTGCAATCGACAATCAAATTAGGAAAGTTGAGAAATCTCTTAATGAATCAGCTGTTTCACAAGGCAAACCACCACTTCCATGGGTGCGGTTGGATGAGGGAGAAGTCGATGAACTTGCTGCATTTCTCTCTGGCCCATCCACCTCTTCTGCAGGCATAACCCATGCAAAAGTACATGGAGTGGAGCTGCAAGTTCCCAAGTGGGAAGAGAATGTAAATCAATCACTTCTTGAGTGTTCCCAGAATCCTCCTCATTCGGAGGAAGGTGTTCTAGGTGAGGCCATAGACGAGAAGTTTTTAGGCCATCGGAGAACAGCAAGTGCTAGTGCTGACATTGGTGCATGGCAGATTGCACTTGGCAATGATATTTCCATCAAAGAACCTGCATCCCCTCCTCGC</genome_strand>
        <mrna_strand>TACAATAGTAAATCTGCTGACGATGCAAGAGATAGACGGCATGAATTTTTTATTGCAATCGACAATCAAATTAGGAAAGTTGAGAAATCTCTTAATGAATCAGCTGTTTCACAAGGCAAACCACCACTTCCATGGGTGCGGTTGGATGAGGGAGAAGTCGATGAACTTGCTGCATTTCTCTCTGGCCCATCCACCTCTTCTGCAGGCATAACCCATGCAAAAGTACATGGAGTGGAGCTGCAAGTTCCCAAGTGGGAAGAGAATGTAAATCAATCACTTCTTGAGTGTTCCCAGAATCCTCCTCATTCGGAGGAAGGTGTTCTANGTGAGGCCATAGACGAGAAGTTTTTAGGCCATCGGAGAACAGCAAGTGCTAGTGCTGACATTGGTGCATGGCAGATTGCACTTGGCAATGATATTTCCATCAAAGAACCTGCATCCCCTCCTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325924" ref_strand="+" ref_description="SGN-U325924        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:9640185-9641853 REVERSE | Aliases: T22C5.15, T22C5_15(evalue: 4e-21, score=98.6) genbank/nr: t-snare(evalue: 2e-30, score=135)">
      <seq>tatttccatcaaagaacctgcatcccctcctcgcagaataccaagttaccagggattgttgaatgccgtggaatctgttaaggagttaaaatggcccaagaatggttaccggaagttgaagttcaatcaagaagctgacaatacattgccgcgttctcagccaccaacaaggaacacaaacacatgctatgataggaataagagttgccttgatggttgtgatgattgttatgataagcaactgtatggttggtatggtgccgttcagcgccagctgcaaagatctcagtattacatgcaatatcgtcgacctgttcgaatagttttctcagtgtttcttctcattttcctgattgcatctctccagcaagaatgattggagacttcaacaaatgattcaggttcatgtgaagattgagctgagatgagttctagtggcagtccggacaatctgagagatgaacctttattcttgtaattgatgaacttgcaatgtcgagacggtcagaggaaaaagggcctcagttttggtattaccttatagaggaaagatgtaaattacatgtaattttgttcaagtgatgcaaagctggtgctattatctcaacatactttgtagtaataccttatcaccattagtggagaccaaattatgttgtattatgatattccgtccatcagaaacaacttctctacctctaaggtaaaggtaaggtgtgcgtctcctccaaaccccattctgtaggattacactggctatgttgttgtatacagaaatgaaagagatgattaggtctatttgacttgctaaatcatgtatattattgtattactgtaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="95582" stop="102094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95882" g_stop="96053" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96054" i_stop="96566" i_length="513">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96567" g_stop="96750" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="356" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96751" i_stop="99719" i_length="2969">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99720" g_stop="99792" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="429" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99793" i_stop="101385" i_length="1593">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101386" g_stop="101793" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="837" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="838" polyA_stop="860"/>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-U325924" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95882" e_stop="96053"/>
          <exon e_start="96567" e_stop="96750"/>
          <exon e_start="99720" e_stop="99792"/>
          <exon e_start="101386" e_stop="101793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCCATCAAAGAACCTGCATCCCCTCCTCGCAGAATACCAAGTTACCAGGGATTGTTGAATGCCGTGGAATCTGTTAAGGAGTTAAAATGGCCCAAGAATGGTTACCGGAAGTTGAAGTTCAATCAAGAAGCTGACAATACATTGCCGCGTTCTCAGCCACCAACAAGGGTGATGCACTGTTCTTTATAGTATCCAGATTTGTTTTACATTACTCTCTTTGGACCATTTATTTGATTACAATGTCAAAATTCTCATTTTTGATTCATTGATATCAATTATTTCAAAATTCGAGAAAAGAGAACCTAAACAAGTAAAACAACAAATTAATCCTGTCCATTATTATGAGAATATATACTCAAAATAAATTCCATTAGGGACCAGGAATTAGAATTATGAAGTTTCGATTTAAAGAACTAAAATATGTAAAATCAGTTGGACATATCGATATAGTTTTGAGCTTTTGATAGATTGTAATACTTTTGAAGGGGAACTACATTCGCCTGTGGATATATAGAGTAAGGTTGCCAGTTTTTCTTAAAAATAAAATCAGTTGGACTTGTAAACAAACTAAATAAAATCAGTTGGAACAAGTGTAGTATTTATGAAAGATCCAGAAATAGTTGTATATTTTTCATATCAGTAAATGATGTTTATGTGAATGATCTAGTACTTCTATTGCAGAACACAAACACATGCTATGATAGGAATAAGAGTTGCCTTGATGGTTGTGATGATTGTTATGATAAGCAACTGTATGGTTGGTATGGTGCCGTTCAGCGCCAGCTGCAAAGATCTCAGTATTACATGCAATATCGTCGACCTGTTCGAATAGTTTTCTCAGTGTTTCTTCTCATTTTCCTGATTGGTGAGTTTGCTAACGACTCTTGTTTTATCTATCTAACCTTTTATTGACTCTTTTACCCATAAACAGATTTTGAAAGTACTAAGAAAAAGAAATCCTTTATAGTGTATTCTCTGCTGCTGAGGTTTTTCTTCATTCTTCTGGATTGGGAAACCATCAATAGATATTGTTGAGTTTTCTGTGCCATTGATGCTTCAATTCAAATCATTTTCCTTATTTCAGCCTGCTTGCACTGATGATTCTTTTGATTTACCTATCCTTCTATTTTCTAATAGAGACTTGAGAGAAGTTATATATATATGACAAGTAGAACTATCACAGACCCCGAGCTGCTTTTTTTTTTTTTTTTTTTTTCATGTAGAACTATTTACTATAAAAAAAACTTTCAATTGGGATCTCCCAGGGTAGAGTTAGTCGTTAAAAATAAATGGGTCATTCCATTCAACTATAATTTGGATAGGAAGTTGTTTGTAGCAAGTTCTATCCAGGGAGCAGTGGTTTGCAGCCAGTTCTCATATGTACTGGAAGGATTCCTCCATCTTGCAGCTTCTGCTCAGTCAGGGAACAGTCCTTCCTTGTAGTGATGATATATGTTAATCTAATCTATTATCAACCAAAAATTTCTTCTCTTGATATCCGTTGACATAAATAATAGCTAAAGCAAAAACTCGAATATCCTTCATTTATTCTGACTTGCTTTTTCCCCTTTTTGGCTGAAGTTCTACAGTAGCAAATAAATTCATGACATGTCAGCCCTGAGCCAACAATAGCTTGTTGCTTCCTTGACTTAACTTTTATCAGGGATACCGTTTGTTTAGAATAGTGTCCATCTCCAAAAGATTTTATGTGTGCATTGGAGTGAGTGTCAGAGACGTGGAAGAGCTCAATCTTCATTCATACTTGTCTTCTACGAGAAAAATGTTTACCCTGTGTCTCAAGTGCTACCAGCTCATACTGTGTAGGAGAGGATTGGGTGTATGCCATACAGCCATATGCAGCTTCCTCTTGTATTTCTCCAATGAATCGAACCCATGACCTTTAGTTTACCAAAGGAGCAACTCTATCCTTAAGTGAAGCCCTCCTGACTTGTCTCTCACCTGAAAGGGAAAGACTTCTCAAAGAGTATAATTTTCAAGGGAAAAACTTCCCAAAAGTATAATTTCTTCTAAATAAAGAAAATTCCCTTCAAAAGATATAATGACATTCTCGTTTCAGCAAGATTTGCAGAATCAGGAAATGTACTTATAGTCTATTTTAGAGTTGGTAACTAGAGTTTTCCCCCTTGGTGGGAAGTTTCATGAGTTCCAGTCTTTCTTTTTCTTTCATTGCAGTATGACTAATGATCATCAGAATGAACTTGATATACATCTGGTTTGTGTACAATGCTTAGAGAATGAGGCAACTAGAATAACATGGTGAGGTTCTTGAGAGAGTTGCAGGAATAAAGTGTAATGACCTTCCTGGTCATTTCTATGTTTTGCCTTCTTTGCATCATTTAGAGCATTCCTGTAGAGACCCCAAGCCATTTATGACTTGCTGGGACTGAAAGTTCGGTCACCTAACAGTTCGTTTGGTAGTGATGTGATTTTTTAGCGTTTGGAGCTTATGAACCTTGAACGATCATTTTCGATCCAAAGTTCAAGAAGATGACATCTGGACTTTAGTCAGCATTCTGAGTAAATGCGCTCGGATGTGAATTCCGTCAGCGTGGTTAGCTCAGAAATATCAAGTTTGGTCTAGATTGACCCTTTGTTCGTGTCTCGAGGCTTTTAAGCTAATTGTGAGCCCCTTTTGGATTTCGACTTAAAATGCAGTTGGGTGTGGGACCCACTTTTTGTCAAGATCACCTCGTATGGAAATTTAAACTGCGACATCGAGTCCGATATATAGAATTTGGTATGGTTGCATATCTTGTTTGAGTGCACGGGGCTCCAAAAGAGTTCTTAAGTTTTTGATAAAAATGCTAAAATCTAGTGCATATATAGCAAAATTATCTCATTATGGAAATTTAAAACAACATATCTCATTTTGGAAATGAGCTGATAATTCTGCTAATACATGCACCAAGCTTTCAGCGTTTTTTCAGAAACTTAAAAATTCCGACGGGGTGTTCCGAACTCGTTCAGAGCCCCGTGCGCGCAAACGAAATATGCATCCATACCAAATATGATATACTAGACTCCATGACGCAATCTAAATTTCCATTCAAGGTTGACAAAAAGTGGGTTCCACACCCAACCGCCATTTAAGTCAAAATCCACTAGAGACTCGGAATTAGCTCTGGACGCGAACAAAGGGTCAAACTCGACATTTTGGAGCTAATCGCGTTGATGGAATTCACATTCGATCACGGTTACTCAGAATGTTGACTAAAGTCAAACTTAGGCTTAAACTTTTAAGTTAAAACGCCTAATCGTATCGACTCACACTGAAAACCTTGGGAGTCATGCCGACCATGCTTCTAGCCTTAATGACCCTTCCGAAGCTGATGGAATAGTTAGAATTGGATTTAGATGTCCTCTTTTGATTGAAAATGATCGTTTAAGATATATAAGCTCCAAAAACTAGAAAATCGCATAACTATCAAACGAACTGTCAGTCCCAGCTTGAGGTAGCTACAGGAACACACAGAAGGCAAAACACAGAAATGACATAGATAATCTTTTGTAGAAATTTGGCACTTGCACCAAGAAAGAGAGCTAGGTAATTACCTTTTAGTTCCCTGTGATTTCATAGCATTGCAGCTTCTGCTAAACTAAGCTCCTTTTTTTTTGTTTTCTGCTACAAATCTTGAATACATATTCTGCATTTGAGAGGTATACCGTATACCGAACAAGTAACCTTTTTTCTTCTTACGTCCACTCCTTCCAATCAAAAGAAAGAAAAAAAAGCAAAGAGTACCTGCTCTGTAGATACACATTCGTTATTTCTTTCATTGTTTTTTTCTTGGGAATTGATTTCTTTCTGTATAGCATCTCTCCAGCAAGAATGATTGGAGACTTCAACAAATGATTCAGGTTCATGTGAAGATTGAGCTGAGATGAGGTAAGCTCAAACTTTTGCAAACCAGACCCGGTCTTTCTTGGAATCCAGAATTTGCCAATAACTAACTGAACTAATCCATATGTGTCTCTCTCCTATCGCTCGCTACTAGACTAATAGTTGAAGTAATGAATGGAAAACTATAGTTGCTAGGAATGCTTCGGAGATATTATGGGAAATCGAAAATGTTGAAGTGTTGACTTATAAATAGGAAGATGAGGAGATACAGGGTGAATGATATTCAGCAAGATTTGTATTCATTCACAGAGGAATTCAACTTTGAAAAGGAGAAGGACTGTTCCAAACAAAAGAACCCGTATCAAGTCCCAAGTCCTTGTGTCTGCTGAATGCTTACTTTTTTCTTGAGTCTGTTGGCAGAAGGGCTACTAGCGTGGAAGACTCCTTTGGCAGAGACAATGGCACCATCTGAGGAAGAATAGGATTTTATTCCCTGGCAAAGGGAAGAAGTTTCATTTCCAGCCATAGACACCTATACAATCATTGACTTCACAATTTGACTGCCCTATCTTTGATGAGATCCCAAATATCAGTAGTCTATGGTTGTCTGTTAGTAGATGCCACCAAATCTACCAATACTTATATAGCTTGTATTGCCAAACTTCCAAAAATCTGCTCATTTTGAGAAGTGTTTTTTGTTAGAATTGCTTTTACAAACAGTATGTTTGGATAGCAGTAGTTTGCATTTGGCTTATCATTTAAAAGCACTTTTGCCAATATTAGATAAGTAATTAGTGCTTGGTTAAGGTTCCAAAGGTGCTTCGGGAGAAAAAAACTACTTTTTAGCTTCTTAAAAACAACTTTTGCTACTACTCAGAAACACTTATTTTGTTCTTAAAAGTTTGGCCAAACTCCTCGATTCTCTATAATATGCATATTTAAAATAACACTTGACTTTCCAAAAGCTTGGACAAACATGCTATTAGTTTGATTCTGCTTCGGGCGTTCTCCTCTCCCCAACAGGACCACAGAGCATCACTAAAATATTGATGCTAAGTACAGTGGAGCACATGTGTTGGTCAAACAAAATAACCTAGCTCTTTACCCGGTACTTGTGCTGGCGGGAGGTAGCAGGAACTGGTGGAAGCCGAGTTCGTACACCACTGTTATTAAAAAAGAAATGGTGTTGTTGAAGCAACTTACATATTTCAAATTGTAGGATGTTTGGGGTATTGCTATTTCTTTCTTTGATAGAAAATCAGTATAAACCAACATATCTTAACGTCTCTTGGACAGTTCACACCATAAATGACAATTTATGGAACCGTAAATTGCTTGTAAAATCAGCTATAGCTCCATCGATGGCCCCCCTTGTTAACAAGATATGCAGTAACTATGTTAGTTTATTTCCTACTCGCAAATATCATTGCCTTTTAAGGTAAGATTGTACTGTCATAAAGTAGATAGATCTGAAACCTGTAGTGCCAGTGTGCATCCATTTTAGTATTACGTTGGGCTACATACATATATGTTTTACAATAATTTTGGCCGTGTATATTTGTATTGGTGATAATCATTAGACATAAAACTGAGTTTCATTTGTTAGTTGGTGCCTGAATTATTTTTTCCCTGCTGCAGTTCTAGTGGCAGTCCGGACAATCTGAGAGATGAACCTTTATTCTTGTAATTGATGAACTTGCAATGTCGAGACGGTCAGAGGAAAAAGGGCCTCAGTTTTGGTATTACCTTATAGAGGAAAGATGTAAATTACATGTAATTTTGTTCAGGTGATGCAAAGCTGGTGCTATTATCTCAACATACTTTGTAGTAATACCTTATCACCATTAGTGGAGACCAAATTATGTTGTATTATGATATTCCGTCCATCAGAAACAACTTCTCTACCTCTAAGGTAAAGGTAAGGTGTGCGTCTCCTCCAAACCCCATTCTGTAGGATTACACTGGCTATGTTGTTGTATACAGAAATGAAAGAGATGATTAGGTCTATTTGACTTGCTAAATCATGTATATTATTGTATTACTGTA</genome_strand>
        <mrna_strand>TATTTCCATCAAAGAACCTGCATCCCCTCCTCGCAGAATACCAAGTTACCAGGGATTGTTGAATGCCGTGGAATCTGTTAAGGAGTTAAAATGGCCCAAGAATGGTTACCGGAAGTTGAAGTTCAATCAAGAAGCTGACAATACATTGCCGCGTTCTCAGCCACCAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACAAACACATGCTATGATAGGAATAAGAGTTGCCTTGATGGTTGTGATGATTGTTATGATAAGCAACTGTATGGTTGGTATGGTGCCGTTCAGCGCCAGCTGCAAAGATCTCAGTATTACATGCAATATCGTCGACCTGTTCGAATAGTTTTCTCAGTGTTTCTTCTCATTTTCCTGATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCTCCAGCAAGAATGATTGGAGACTTCAACAAATGATTCAGGTTCATGTGAAGATTGAGCTGAGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAGTGGCAGTCCGGACAATCTGAGAGATGAACCTTTATTCTTGTAATTGATGAACTTGCAATGTCGAGACGGTCAGAGGAAAAAGGGCCTCAGTTTTGGTATTACCTTATAGAGGAAAGATGTAAATTACATGTAATTTTGTTCAAGTGATGCAAAGCTGGTGCTATTATCTCAACATACTTTGTAGTAATACCTTATCACCATTAGTGGAGACCAAATTATGTTGTATTATGATATTCCGTCCATCAGAAACAACTTCTCTACCTCTAAGGTAAAGGTAAGGTGTGCGTCTCCTCCAAACCCCATTCTGTAGGATTACACTGGCTATGTTGTTGTATACAGAAATGAAAGAGATGATTAGGTCTATTTGACTTGCTAAATCATGTATATTATTGTATTACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340233" ref_strand="+" ref_description="SGN-U340233        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 7e-30, score=134)">
      <seq>tgatgacaaacttcactggaactggtatcggtgttggtgctggcattggttgcggattcggtgtaggatggggtttcggaggcatgcctttgaatttcttgggtcttggtgtaggtggtggctgtgggatcggagtaggcctcggatggggatttggctctgcctttggtagccagtacaggaactctagagttacatttgacggcacagattttatcaataaggagcgtagtgaagaaagagatttaaaagatccagccaaaggcactggaaaagctctttcttctcagtaaatatacacatcttctgttgatgcactcatattctcactttccaaaatttgttaaagttgtacaaccagttccatttcagctatcacttggaaacatatgtagtatcatttgacacttgacagtactctcttctttgatgtctaaaatttgtttacttatgatgcttgggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="-" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="106287" stop="102808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105987" g_stop="105952" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105951" i_stop="105841" i_length="111">
            <donor d_prob="0.868" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105840" g_stop="105796" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="81" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105795" i_stop="103579" i_length="2217">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103578" g_stop="103546" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="114" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103545" i_stop="103460" i_length="86">
            <donor d_prob="0.787" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103459" g_stop="103102" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="472" r_length="358" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="-" ref_id="SGN-U340233" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105987" e_stop="105952"/>
          <exon e_start="105840" e_stop="105796"/>
          <exon e_start="103578" e_stop="103546"/>
          <exon e_start="103459" e_stop="103102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGACAAACTTCACTGGAACTGGTATCGGTGTTGGTATGCATAAATGTTCAGTACTTTACTTCTTCTCTTTCAATAAGAACAAGAACTTATTTTTTTTTACTTGCTTTCATGTACTGATGTAAAAGAATTTGAAATTGTGTTTAGGTGCTGGCATTGGTTGCGGATTCGGTGTAGGATGGGGTTTCGGAGGTTTGATTCTTTCATTTTCAAGCTTTTTTGGGTTCTAAAATATCTTTTTAGGTCTGTTTTAATATTTTTTCACTTATAACTAACCAAAAGGTCTAGCTTGGAACAGGAAGATGTGAATTGTATATTAGGAGTTTAGTGGGGTTGAGCAGAGTGATTAGTGATATTACTGTTGTTCTTTGGGAATTCTTGTTCTGAATTTGGTTTAGTAACTATTTATAATTATTAGTGAGACACTGCTAATTTGCTTGTCCTAGTATCTTTTCAGTATTAGTTCAGGAGAAAAGTTTTCATCTTTATTGAGTCTTCGATTACATGCTTATGAATTGGGGTGACATAATTTGCTAGATTCGTCAGCCATGAAATATGGTATTGCAGAAAGCGTAGTACTTTAATACGTATTCTTTTGCACCAGCTTGGTTGATTATGAACTAGATTGAAACGAACTATACATGAAAAGATATGATTAGTTTGTCATGTATCCGAGTGCACAATTGCTCTAGAGTTTACAGTTTTGAAGCATTTGGTAGAATTTCACACATGTAGAGTCCAGATGTCAGAAGACCTTGAAAATATATTCAAGAAAATCTATTGAACACTGTTTCATAATGTAGAACAAAGATTCTTTTAGAATGTGGTCATTGTTGCTGGCATCTCCATTTTATACCAAAGTTTTTCAGCGACAGAACAGCGCAAAAAGAGGTGGCTGCTGTCTTTAACCTCTTTTAAGAGGAGTAAACTAAAAGGAAAGATCAGTACTTTTTGACATTTGATTGGAAAGTGACATGTTAAAGCATCCATCCTCATGGAGAGGATTGTTTTATAATAAAAGCTATTTAAATGTGCATAGAGGAACTTAGAAAATTTATAAATTTGCCTATTGAAGGCAGTGATAGCTTAAGGAATAAGTGGACCTGAGAAGACTTTTGAAGCATGTTTTTGGTAAACTATGCCAACTTAGAAACTGCTACTCTTTCAGTTAAACTGATATTAAAGCAAGGAAAAAGGCATCTAGACAAGCCTCTGCACTAAGCCTCCAAGACATGTGATCTCAAGTGTCCCTTGCAGTAGATGATCCCCACCCTCCCTTGCTTTCTATGGAACTTAAGTGCATGGACAGATGTAGCATCAAAATTATATGGAGTGTGTATCAATTTGTCGGCCAAGATGTTCCTTATCTATTAATTAGCTCCCTGCAAAGTGTAGATTTGGGAGGGAATCCTTTCCAGAGATACCAAAGTGTCGCTGTTGGTCCCGGTCTAGAACGTGGAAGGCTAGTGGTCGCCATGATCTGAATCAGTTTGTAGGGGCGACCTTAGTTTTGCCACGTTGGCTGCGTTCTGGATTAAAACCTAGCTTGGTTGATTTTTGATGAAGTATTCCTACTTGTTGATGACTTCCTATAAATGGGGGAAATCTCTGAATGTTCTATACGTCTCTAGGTATCACTCATCAGTGTTACTAAAAGTCATCGCTTCATTTCTTAGATGGATAAAACGAACTGAAGTAAGGGGTAACCGCTTCATGGGTGAAACCATGCGCTTCATAGAAGCGTGCTTCAAACAATGACACGTAAAATGATCCAAAAGAAAGGGGATGTTCTTTGAAGCTCAACTTTAGGAGTTGGAAATGTTGCCACTACTGTATCTTGGATTCTGAAATTAGTTATCAGTTGCAATTTGATTATTATAGTACTTTTAAATTCAGGTACTTTTGGTCCTTTTTCTAGTTTTCCATAAAATGTTTGCTTTACTTCTCTTTATCCTTCAAGCCCTATAAACCTTGTGAGTTGTTAGCCCCAAAACACTGCTATGCATGTTAGTTCTTCACTGGATTCTTTGTCTGATGAAAATCCTCCTTTAACATCTCTATATTCACATTTCTGAGTTTATTTCCTTGTTCCCTTTGTCTGATTGTTGACATGGACAATGTTAAAAGTATCATATACTACTATATTTTATTAAATTGATTATCGTCATGCTTCTAAAGAAACGAAGGAGATTATCTTATGTTTTGTGTAGGTTAGGAATGTCGTAGTGTTTATCTAAGGGTTGGGACGTATCTCTGTCCAAAGATCCAAGCACACACACACCCGAATCACAATTCTATTCCTCAAGAGAAAAATGTTTGTTTCTTCACATTTGATACAAGTCCTTTTTTTGCAAAATACTCTTCTCTAGTTGTATCATCTAACCTAATGTGTAATCTTGTTTTTTCCAGGCATGCCTTTGAATTTCTTGGGTCTTGGTGTAGGTAAAATCTGAATATAAGCCATGTTTCTTGAAATTGTATCTGTGGTCCAATTTTTTGATGTAATGTTTCACAATTGCTATTTATAGGTGGTGGCTGTGGGATCGGAGTAGGCCTCGGATGGGGATTTGGCTCTGCCTTTGGTAGCCAGTACAGGAACTCTAGAGTTACATTTGACGGCACAGATTTTATCAATAAGGAGCGTAGTGAAGAAAGAGATTTAAAAGATCCAGCCAAAGGCACTGGAAAAGCTCTTTCTTCTCAGTAAATATACACATCTTCTGTTGATGCACTCATATTCTCACTTTCCAAAATTTGTTAAAGTTGTACAACCAGTTCCATTTCAGCTATCACTTGGAAACATATGTAGTATCATTTGACACTTGACAGTACTCTCTTCTTTGATGTCTAAAATTTGTTTACTTATGATGCTTGGGAAAACTCGGT</genome_strand>
        <mrna_strand>TGATGACAAACTTCACTGGAACTGGTATCGGTGTTG...............................................................................................................GTGCTGGCATTGGTTGCGGATTCGGTGTAGGATGGGGTTTCGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCTTTGAATTTCTTGGGTCTTGGTGTAG......................................................................................GTGGTGGCTGTGGGATCGGAGTAGGCCTCGGATGGGGATTTGGCTCTGCCTTTGGTAGCCAGTACAGGAACTCTAGAGTTACATTTGACGGCACAGATTTTATCAATAAGGAGCGTAGTGAAGAAAGAGATTTAAAAGATCCAGCCAAAGGCACTGGAAAAGCTCTTTCTTCTCAGTAAATATACACATCTTCTGTTGATGCACTCATATTCTCACTTTCCAAAATTTGTTAAAGTTGTACAACCAGTTCCATTTCAGCTATCACTTGGAAACATATGTAGTATCATTTGACACTTGACAGTACTCTCTTCTTTGATGTCTAAAATTTGTTTACTTATGATGCTTGGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325063" ref_strand="+" ref_description="SGN-U325063        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:7807186-7809167 FORWARD | Aliases: MKD15.6, MKD15_6(evalue: 1e-106, score=383) genbank/nr: gi|22327005|ref|NP_197711.2| expressed protein [Arabidopsis thaliana] gi|18491157|gb|AAL69481.1| unknown protein [Arabidopsis thaliana] gi|20258933|gb|AAM14182.1| unknown protein [Arabidopsis thaliana](evalue: 8e-105, score=383)">
      <seq>agaagatcagcaggcaacgatcgagccatggctttcctcttccacaaatttcaagagggagtgaaaattcttgctaaaagccccacttttgctagagaatcgaggcttcttcagttcgaagctgacataaatctactattcctttacaccagttacaaccgtttaggaaggaatgccgaagaagctgatgcagaggagattattgatatggctaacaaagcctcattagacgatcaacagaagcaagttcatgagaatgtgcattctcaggttacaaacttttgcagctatatggatgacatattactcctggatcaaaaggtcaaagacaatcaggccacatcaccagcaacactacatttttctcctcgtagtagtggccttggtcttgctgttgatgggaattctctagcacaagaccgcattgccgtacctgaaaccaagacactgcaccgcacagaagtttcacagaggttaaaagatcttatgggctacactctcgaggtcaaaccatctcaaattcctcatgaggatgctgaaaagggtttattcttacaaggtgaagccaatattggttctgtcatagcattctatcctggagtagtctaccctccagcatattaccgctatattcctgggtaccctagagttgatgcccaaaatccacatctgatcacacggtatgatgggactatgatcaatgctcagccctggggtgctggtggtgaatgtcgtgaattatgggattggaccagttctcctgaacctaagtgcactatgcaagctggtgaaaaaggttctgacctagatggaacagacgttggaggcaaccttgaagtgtttgagaggagaaaccctctagcctttgctcatttcgccaaccacccagccaaaggcatggtccccaatgtaatggtatacccttatgatttccccctgcttgaggaggacatgagaccctatatacctaatgtttcatttggaaacgatgaagaaacagagactagtaaatttggcagctttaggttcatcaaaatgtggaagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008K13-plmNX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0008K13.1" temp_strand="+" temp_description="C04HBa0008K13.1  CU457448.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0008K13 sequenced_by:sanger upload_account_name:uk">
        <position start="105926" stop="109753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106226" g_stop="106282" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106283" i_stop="106482" i_length="200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106483" g_stop="106577" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="152" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106578" i_stop="107653" i_length="1076">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107654" g_stop="107928" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="427" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107929" i_stop="108833" i_length="905">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108834" g_stop="109453" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="1047" r_length="620" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008K13.1" gen_strand="+" ref_id="SGN-U325063" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1047</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106226" e_stop="106282"/>
          <exon e_start="106483" e_stop="106577"/>
          <exon e_start="107654" e_stop="107928"/>
          <exon e_start="108834" e_stop="109453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATCAGCAGGCAACGATCGAGCCATGGCTTTCCTCTTCCACAAATTTCAAGAGGTTCTCTATTTCACCTTGCACCCTTTTAACTGTTAATTTTATGATAACTTGTTCATCAATCAAACTGTACATTTTGTTCTGTTTTTTTTTCTTCATTAAGTATCTTGAAGATATTTGTAATGTGGGTTTTGCATTTGTTTGTTGAATTGACACTGTTAATTATCTAAAGTTGATTTTTTGAATTGACATACGATTTTCAGGGAGTGAAAATTCTTGCTAAAAGCCCCACTTTTGCTAGAGAATCGAGGCTTCTTCAGTTCGAAGCTGACATAAATCTACTATTCCTTTACACCAGGTAAGAGGTGATGTACAAATTGAAATTACTTTTATTGGTTGCTGTTTTATATTGTCATTGTAATTATATTGTTTTATTCAACATTTTCAAAGTATAATGTTGTGTGAGATTCGGGTTTCTTCAGCGCTGATATAGATCTAGGAAGAACTTGTTGTGCTTTTATCAAAGGGGGAATGAAGAACTTGTTTGATATTTGTGAATTTCTGTTTGCTTTTTAAGTTGAATCAATGACAAATCTAGTGTAATCCCACATGTGGGGTCTGGGGAGGGTAGAGTGTTCGCAAAACCTTATCCCTATTTTTGAGAAGATAGAGAGGTTTCAAAATGAGCATCAGCTGAACAGATAGTGAAAAAGAGGCAATAGCAGTAAACAGAAAGAACAATAAGGTAATCACATATCGAGGCAAAATAACACTTAATGATAGAAATCTAAAAATAAGGGAAAGAATTGAACAATACTAACCTTCTACCTTAATCCCCGATCTCCACACCCTCCTATCAAGCTTCATGTACTCAGTGAGCTGAAGTTGCGGCATATCCTTCTGATCGCGTGAAGTTATTTTTCATGATTGAGGATTTGCTTGGGGACTGGGGTAACAGTCCTTATTCCACATTTTTCTTTTAGTTTCTTCTTTAGAGGCCTACAGCTTCAGTGGGAACTGTGCAGTATTGAGAGAGAGAGAGTTTCTTTATTTTCTTGCCCTCGTTGATAAATAGTAGAACAACAACAAGAATACACCATAGGTGGGGTCTGGGGTGGGTGGTGTGTGTGCAGCCTTACCCTTATACCTTGTGAAGGTGAAGGGAATGTTCCCGATAGACCCTCTGTCAAGTAAAACATATCAAAATAGTATGAAAAGAAAGCATAGAAATATGCTTTAGTGAGGAATTGAACCTACAGAGGGACTCGATTTGAAATTCCTTTACCACTGAACCGAGGTGCTCCGTTTGATAAATAGTAAAGTAACTAACATTTTTATGCCTTTAAAATTGCGGCTTCGTTGGTGAAATTACATATATCTTTGCATAGATGCACCACTGTACTTTCATGTTGCCCTGATAAACCTTATTCTCAGTTACAACCGTTTAGGAAGGAATGCCGAAGAAGCTGATGCAGAGGAGATTATTGATATGGCTAACAAAGCCTCATTAGACGATCAACAGAAGCAAGTTCATGAGAATGTGCATTCTCAGGTTACAAACTTTTGCAGCTATATGGATGACATATTACTCCTGGATCAAAAGGTCAAAGACAATCAGGCCACATCACCAGCAACACTACATTTTTCTCCTCGTAGTAGTGGCCTTGGTCTTGCTGTTGATGGGAATTCTCTAGCACAAGACCGCATTGGTAAGAATCTGCTACATCTTAAGCTAAATTTTCCATGTACTTCTTAGTTGTTCCTTTTTTTATTTTTTTGAGGACTTCTTAGTTGTTATATTGTGAAAACTTGTTTTGGATTTTGACTTGCACCCTACTTCAGTGTTGGCAACCATTTGATTTCCTGCTTCTTCTCTGTTGTGACATTGCTTTACCTTGTGTTATGCTGTCCTTGGAATTAATTGGCTGTACCTCTCCAGTATATATCTAGTATTACCGTTAAAGCCACTACTTCATTTTTTATATTAAACACAGTTAGCCTTCAACCAGTGTTGAAAATGTTTTCATTATAAAGTTGGACAATAGAAGTAGTTATATCTACCTCTTGTAGCCGGTAAATACTGTGTCATTTGAAATTTCTGAAGTAGAATATTACTGAATTTATGTAGAAATTGATGAAGTTCCTAGAATCGTTTGATTGGTAAGATGGATTTGCTTTTCTTTACACGAATACAAGGTGGGGATGGGGGGGCCTCATTGCACATCTGCTCATGGATTAAGTAGATCAAATTCAACTCTCAGCTTAAGACACTTTAAAACGATTACTGAGCTCTGGATGTAAACTGCTAAAGGAACGGAGTATAGATATTCCAATTAGAATGTTGCTTCAACTTCTTCATTGGGAGGGGTGAATTGTCACTATTATATTTCCTTCAGTTCATTCAGTATAAACATGATATCTATAATGAAGTTGATGGACAGTTCTAGTTGAGTAAATATTGAATTTGTTGCTGCATACAGAATAACATAACATCACGGATCATGAGGCTCCTTGGTGGTTGGTTTTGTATATATTGTATTTTATTTGTTCTTTGCAGTGGCTTCATAGCTGCATCACCCTGGTTTTTAATTATTGATAAAAAATTTCAGCACAGCCGTACCTGAAACCAAGACACTGCACCGCACAGAAGTTTCACAGAGGTTAAAAGATCTTATGGGCTACACTCTCGAGGTCAAACCATCTCAAATTCCTCATGAGGATGCTGGAAAGGGTTTATTCTTACAAGGTGAAGCCAATATTGGTTCTGTCATAGCATTCTATCCTGGAGTAGTCTACCCTCCAGCATATTACCGCTATATTCCTGGGTACCCTAGAGTTGATGCCCAAAATCCACATCTGATCACACGGTATGATGGGACTATGATCAATGCTCAGCCCTGGGGTGCTGGTGGTGAATGTCGTGAATTATGGGATTGGACCAGTTCTCCTGAACCTAAGTGCACTATGCAAGCTGGTGAAAAAGGTTCTGACCTAGATGGAACAGACGTTGGAGGCAACCTTGAAGTGTTTGAGAGGAGAAACCCTCTAGCCTTTGCTCATTTCGCCAACCACCCAGCCAAAGGCATGGTCCCCAATGTAATGGTATACCCTTATGATTTCCCCCTGCTTGAGGAGGACATGAGACCCTATATACCTAATGTTTCATTTGGAAACGATGAAGAAACAGAGACTAGTAAATTTGGCAGCTTTAGGTTCATCAAAATGTGGAAGTCC</genome_strand>
        <mrna_strand>AGAAGATCAGCAGGCAACGATCGAGCCATGGCTTTCCTCTTCCACAAATTTCAAGAG........................................................................................................................................................................................................GGAGTGAAAATTCTTGCTAAAAGCCCCACTTTTGCTAGAGAATCGAGGCTTCTTCAGTTCGAAGCTGACATAAATCTACTATTCCTTTACACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAACCGTTTAGGAAGGAATGCCGAAGAAGCTGATGCAGAGGAGATTATTGATATGGCTAACAAAGCCTCATTAGACGATCAACAGAAGCAAGTTCATGAGAATGTGCATTCTCAGGTTACAAACTTTTGCAGCTATATGGATGACATATTACTCCTGGATCAAAAGGTCAAAGACAATCAGGCCACATCACCAGCAACACTACATTTTTCTCCTCGTAGTAGTGGCCTTGGTCTTGCTGTTGATGGGAATTCTCTAGCACAAGACCGCATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTACCTGAAACCAAGACACTGCACCGCACAGAAGTTTCACAGAGGTTAAAAGATCTTATGGGCTACACTCTCGAGGTCAAACCATCTCAAATTCCTCATGAGGATGCTGAAAAGGGTTTATTCTTACAAGGTGAAGCCAATATTGGTTCTGTCATAGCATTCTATCCTGGAGTAGTCTACCCTCCAGCATATTACCGCTATATTCCTGGGTACCCTAGAGTTGATGCCCAAAATCCACATCTGATCACACGGTATGATGGGACTATGATCAATGCTCAGCCCTGGGGTGCTGGTGGTGAATGTCGTGAATTATGGGATTGGACCAGTTCTCCTGAACCTAAGTGCACTATGCAAGCTGGTGAAAAAGGTTCTGACCTAGATGGAACAGACGTTGGAGGCAACCTTGAAGTGTTTGAGAGGAGAAACCCTCTAGCCTTTGCTCATTTCGCCAACCACCCAGCCAAAGGCATGGTCCCCAATGTAATGGTATACCCTTATGATTTCCCCCTGCTTGAGGAGGACATGAGACCCTATATACCTAATGTTTCATTTGGAAACGATGAAGAAACAGAGACTAGTAAATTTGGCAGCTTTAGGTTCATCAAAATGTGGAAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8251" PGL_stop="6736"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8251" e_stop="8150"/>
            <exon e_start="7993" e_stop="6736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8251" e_stop="8150" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="8149" i_stop="7994" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7993" e_stop="6736" e_length="1258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8251" stop="8150"/>
              <exon start="7993" stop="7400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7413" stop="6736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330483" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTATGCTCGCAAATATTTCCTTCAGGTCCCACTTTCTCTCTCCTCTTTCTTTCTCCTCCGCGTATATTGCTCGCCGGCGTTCGTAACGGTCATATTTCCG : GGTTTTTGAGAGGGTGAATTTTTCGGAGAGATGTGAAGAATTGTGAGAAGTGGCAATGGTGGCTGCAGTATCAACAACAAAGCCCAATCAGAAGGTCACATCTAATGGTTTGAGTTACCAGAATCCGAAAAGACCGCCATTGTTGCCTTCAGAAGCTCAGAATGGACCTTCTAGAAAACCGAAATCTAGAGAGGTTACTTCAAGGTATCTTTCGACTTCTTCTTCATCTTCTGTCTCAACGACGTCGTCTTCGAATACTTCGACTACTTACTCTTCATCGTCTAATACGATTGCCTCACTGAGGACTCCATCGCCGATGGGGACTAGGACGGTTCGACCTGCTGCGACGCCGGTTCAAAATTCCGGTTCAGTTAAACGGTCACAGTCGGTGGACCGGAGACGACCGGTAACGCCAGCGTCTACGGAGAAGTCTGCTGCGGCGAAGCAGCTGTTGAATTCCAGTAGGAGTTTATCCGTTTCCTTTCAAGGTCAGTCTTTCTCTATACCTGTTAGTAAGGCAAAGCCCCCTCCTGCGACGAACAATATTGGAAATGTGAGGAGGGGTACGCCGGAGAGGAGGAAAGTTACTGCGGATTTTGTCACGCCGGAGAGGAGGAAGGTTTCTGCGAATTTTGTCACGCCGGAGAGGAAGAAAGCTACAGCGGATTTTTATACACCGGAGAGGAGTAAAGTTGCGGCGGAATTGAGCACACCAGCGAGAGATCGGACTGAGAATGTCAAGACAAGTGATCAGCATAGGTGGCCAGGGAGGTCAAAGTCACTAAATTCAAGTTTTCTGACACGAAGCATGGATTGTGGTTCTATTGACAAGCCTAAATTTGGATCCGGAAGTGTCACTAGTTCGTCAATGAAGTCGGTGATTGATATATATCATAGAGCTAGAATTGAAGCTAAATTGAAACCTCAAAGTGATAATGATGAGGTCGATATGAAGTCAGCTTATGGATCAGCTATGTCTGCTGATACATTGGCTTCAGATAGTGAAAGTGTCTCTTCAGGGAGTACTTCAGGTGTCCATGATGGTCCGAGTGTTATTCATGGACGAGGAGGTCCCCGTGGTATAGTTGTGCCTGCTAGGTTTTGGCAAGAGACTAACAACAGAATCAGACGAGGGCCAGAACTTGGTTCTTCTATGGACAATGGCAATTTGAAAACAGTGGCTTCTTCTAAGCAAATGGGAAACAAGAAGTTTCTGACTGATAGCCCCAGAACATCAGCCCGGGTTGTCCCAGCTTCT</gDNA_template>
            <first_frame> S  Y  A  R  K  Y  F  L  Q  V  P  L  S  L  S  S  F  F  L  L  R  V  Y  C  S  P  A  F  V  T  V  I  F  P  :  G  F  *  E  G  E  F  F  G  E  M  *  R  I  V  R  S  G  N  G  G  C  S  I  N  N  K  A  Q  S  E  G  H  I  *  W  F  E  L  P  E  S  E  K  T  A  I  V  A  F  R  S  S  E  W  T  F  *  K  T  E  I  *  R  G  Y  F  K  V  S  F  D  F  F  F  I  F  C  L  N  D  V  V  F  E  Y  F  D  Y  L  L  F  I  V  *  Y  D  C  L  T  E  D  S  I  A  D  G  D  *  D  G  S  T  C  C  D  A  G  S  K  F  R  F  S  *  T  V  T  V  G  G  P  E  T  T  G  N  A  S  V  Y  G  E  V  C  C  G  E  A  A  V  E  F  Q  *  E  F  I  R  F  L  S  R  S  V  F  L  Y  T  C  *  *  G  K  A  P  S  C  D  E  Q  Y  W  K  C  E  E  G  Y  A  G  E  E  E  S  Y  C  G  F  C  H  A  G  E  E  E  G  F  C  E  F  C  H  A  G  E  E  E  S  Y  S  G  F  L  Y  T  G  E  E  *  S  C  G  G  I  E  H  T  S  E  R  S  D  *  E  C  Q  D  K  *  S  A  *  V  A  R  E  V  K  V  T  K  F  K  F  S  D  T  K  H  G  L  W  F  Y  *  Q  A  *  I  W  I  R  K  C  H  *  F  V  N  E  V  G  D  *  Y  I  S  *  S  *  N  *  S  *  I  E  T  S  K  *  *  *  *  G  R  Y  E  V  S  L  W  I  S  Y  V  C  *  Y  I  G  F  R  *  *  K  C  L  F  R  E  Y  F  R  C  P  *  W  S  E  C  Y  S  W  T  R  R  S  P  W  Y  S  C  A  C  *  V  L  A  R  D  *  Q  Q  N  Q  T  R  A  R  T  W  F  F  Y  G  Q  W  Q  F  E  N  S  G  F  F  *  A  N  G  K  Q  E  V  S  D  *  *  P  Q  N  I  S  P  G  C  P  S  F  </first_frame>
            <second_frame>  V  M  L  A  N  I  S  F  R  S  H  F  L  S  P  L  S  F  S  S  A  Y  I  A  R  R  R  S  *  R  S  Y  F  R :   V  F  E  R  V  N  F  S  E  R  C  E  E  L  *  E  V  A  M  V  A  A  V  S  T  T  K  P  N  Q  K  V  T  S  N  G  L  S  Y  Q  N  P  K  R  P  P  L  L  P  S  E  A  Q  N  G  P  S  R  K  P  K  S  R  E  V  T  S  R  Y  L  S  T  S  S  S  S  S  V  S  T  T  S  S  S  N  T  S  T  T  Y  S  S  S  S  N  T  I  A  S  L  R  T  P  S  P  M  G  T  R  T  V  R  P  A  A  T  P  V  Q  N  S  G  S  V  K  R  S  Q  S  V  D  R  R  R  P  V  T  P  A  S  T  E  K  S  A  A  A  K  Q  L  L  N  S  S  R  S  L  S  V  S  F  Q  G  Q  S  F  S  I  P  V  S  K  A  K  P  P  P  A  T  N  N  I  G  N  V  R  R  G  T  P  E  R  R  K  V  T  A  D  F  V  T  P  E  R  R  K  V  S  A  N  F  V  T  P  E  R  K  K  A  T  A  D  F  Y  T  P  E  R  S  K  V  A  A  E  L  S  T  P  A  R  D  R  T  E  N  V  K  T  S  D  Q  H  R  W  P  G  R  S  K  S  L  N  S  S  F  L  T  R  S  M  D  C  G  S  I  D  K  P  K  F  G  S  G  S  V  T  S  S  S  M  K  S  V  I  D  I  Y  H  R  A  R  I  E  A  K  L  K  P  Q  S  D  N  D  E  V  D  M  K  S  A  Y  G  S  A  M  S  A  D  T  L  A  S  D  S  E  S  V  S  S  G  S  T  S  G  V  H  D  G  P  S  V  I  H  G  R  G  G  P  R  G  I  V  V  P  A  R  F  W  Q  E  T  N  N  R  I  R  R  G  P  E  L  G  S  S  M  D  N  G  N  L  K  T  V  A  S  S  K  Q  M  G  N  K  K  F  L  T  D  S  P  R  T  S  A  R  V  V  P  A  S </second_frame>
            <third_frame>   L  C  S  Q  I  F  P  S  G  P  T  F  S  L  L  F  L  S  P  P  R  I  L  L  A  G  V  R  N  G  H  I  S   : G  F  L  R  G  *  I  F  R  R  D  V  K  N  C  E  K  W  Q  W  W  L  Q  Y  Q  Q  Q  S  P  I  R  R  S  H  L  M  V  *  V  T  R  I  R  K  D  R  H  C  C  L  Q  K  L  R  M  D  L  L  E  N  R  N  L  E  R  L  L  Q  G  I  F  R  L  L  L  H  L  L  S  Q  R  R  R  L  R  I  L  R  L  L  T  L  H  R  L  I  R  L  P  H  *  G  L  H  R  R  W  G  L  G  R  F  D  L  L  R  R  R  F  K  I  P  V  Q  L  N  G  H  S  R  W  T  G  D  D  R  *  R  Q  R  L  R  R  S  L  L  R  R  S  S  C  *  I  P  V  G  V  Y  P  F  P  F  K  V  S  L  S  L  Y  L  L  V  R  Q  S  P  L  L  R  R  T  I  L  E  M  *  G  G  V  R  R  R  G  G  K  L  L  R  I  L  S  R  R  R  G  G  R  F  L  R  I  L  S  R  R  R  G  R  K  L  Q  R  I  F  I  H  R  R  G  V  K  L  R  R  N  *  A  H  Q  R  E  I  G  L  R  M  S  R  Q  V  I  S  I  G  G  Q  G  G  Q  S  H  *  I  Q  V  F  *  H  E  A  W  I  V  V  L  L  T  S  L  N  L  D  P  E  V  S  L  V  R  Q  *  S  R  *  L  I  Y  I  I  E  L  E  L  K  L  N  *  N  L  K  V  I  M  M  R  S  I  *  S  Q  L  M  D  Q  L  C  L  L  I  H  W  L  Q  I  V  K  V  S  L  Q  G  V  L  Q  V  S  M  M  V  R  V  L  F  M  D  E  E  V  P  V  V  *  L  C  L  L  G  F  G  K  R  L  T  T  E  S  D  E  G  Q  N  L  V  L  L  W  T  M  A  I  *  K  Q  W  L  L  L  S  K  W  E  T  R  S  F  *  L  I  A  P  E  H  Q  P  G  L  S  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7947" stop="6736"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1212</number_coding_nucleotides>
                  <number_encoded_amino_acids>404</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVAMVAAVSTTKPNQKVTSNGLSYQNPKRPPLLPSEAQNGPSRKPKSREVTSRYLSTSSSSSVSTTSSSNTSTTYSSSSNTIASLRTPSPMGTRTVRPAATPVQNSGSVKRSQSVDRRRPVTPASTEKSAAAKQLLNSSRSLSVSFQGQSFSIPVSKAKPPPATNNIGNVRRGTPERRKVTADFVTPERRKVSANFVTPERKKATADFYTPERSKVAAELSTPARDRTENVKTSDQHRWPGRSKSLNSSFLTRSMDCGSIDKPKFGSGSVTSSSMKSVIDIYHRARIEAKLKPQSDNDEVDMKSAYGSAMSADTLASDSESVSSGSTSGVHDGPSVIHGRGGPRGIVVPARFWQETNNRIRRGPELGSSMDNGNLKTVASSKQMGNKKFLTDSPRTSARVVPAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="33676" PGL_stop="37267"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33676" e_stop="33966"/>
            <exon e_start="34095" e_stop="34200"/>
            <exon e_start="36832" e_stop="37267"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.962"/>
          <exon-intron don_prob="0.995" acc_prob="0.768" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="33676" e_stop="33966" e_length="291"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33967" i_stop="34094" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34095" e_stop="34200" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.768">
            <gDNA_intron_boundary i_start="34201" i_stop="36831" i_length="2631"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36832" e_stop="37267" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33676" stop="33966"/>
              <exon start="34095" stop="34200"/>
              <exon start="36832" stop="37267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGCGTATTCATTAGAAATTTATGCTATAAACAATAAAACAAAGAGAATCATCAAATTTTTTCACTGTATAATTTTCCAGAGACTGGAAATTTTGCTACTCTTCTTCCTTAATCGTTCGAAAAATTAATTCGTACATTCATGGAAACCTAGAAATACATCAACTAACGGATCTCCCATTTTTTCCTTTTTGAAACGAATTAATTGCTGCAATATACGGTTATATATAACCATTTTTCAAATTTCTGAATCAATGGATCCGTCTATCATGAAGCTCCTTGAAGAAGACGAG : GATGAAACAATGCATTCGGGGGCGGATGTGGAGGCATTCACTGCTGCCCTAAACAGGGATATCGGTGGAGATAATTCACAATCTCAGCCTTCGGATTCCGATAGCG : TGCCATTGTCTCAAGGAAGCAGTTATACCTCAAATCAGTTTGCCCCATGGCAAACTGCTAACCATGACGAAAATGCCAGTCGTTGTAACCTTCAAGATTCAGAGACCATCCAGCCAAAGGAGGAAAATGTGTCTGATATGCAGTTGAAGAGACTTGATACAGATTCTCAGAATCAGCAGCAAAAAAATGATTCATCACAGGAGATCAATTCCCTTCCCGTGCAGCATATATCCCAGGACAGTTATCAAACCACAGAGGTTGAACAGGACACACTTCATTCTTCTAGAGCAGTGAATATGCCGAATCCTGAAAAGAATACGCAAAATCCAGAATCTCCACATCTGAATTTACAGGGAACAAATAATTTACAGCCCATGCAGAGTTTGACAACAGGAACTAGTAGTCTGCCACGTGTGGCAACAGTGGCAAGTAATCA</gDNA_template>
            <first_frame> F  A  Y  S  L  E  I  Y  A  I  N  N  K  T  K  R  I  I  K  F  F  H  C  I  I  F  Q  R  L  E  I  L  L  L  F  F  L  N  R  S  K  N  *  F  V  H  S  W  K  P  R  N  T  S  T  N  G  S  P  I  F  S  F  L  K  R  I  N  C  C  N  I  R  L  Y  I  T  I  F  Q  I  S  E  S  M  D  P  S  I  M  K  L  L  E  E  D  E  :  D  E  T  M  H  S  G  A  D  V  E  A  F  T  A  A  L  N  R  D  I  G  G  D  N  S  Q  S  Q  P  S  D  S  D  S   : V  P  L  S  Q  G  S  S  Y  T  S  N  Q  F  A  P  W  Q  T  A  N  H  D  E  N  A  S  R  C  N  L  Q  D  S  E  T  I  Q  P  K  E  E  N  V  S  D  M  Q  L  K  R  L  D  T  D  S  Q  N  Q  Q  Q  K  N  D  S  S  Q  E  I  N  S  L  P  V  Q  H  I  S  Q  D  S  Y  Q  T  T  E  V  E  Q  D  T  L  H  S  S  R  A  V  N  M  P  N  P  E  K  N  T  Q  N  P  E  S  P  H  L  N  L  Q  G  T  N  N  L  Q  P  M  Q  S  L  T  T  G  T  S  S  L  P  R  V  A  T  V  A  S  N   </first_frame>
            <second_frame>  S  R  I  H  *  K  F  M  L  *  T  I  K  Q  R  E  S  S  N  F  F  T  V  *  F  S  R  D  W  K  F  C  Y  S  S  S  L  I  V  R  K  I  N  S  Y  I  H  G  N  L  E  I  H  Q  L  T  D  L  P  F  F  P  F  *  N  E  L  I  A  A  I  Y  G  Y  I  *  P  F  F  K  F  L  N  Q  W  I  R  L  S  *  S  S  L  K  K  T  R :   M  K  Q  C  I  R  G  R  M  W  R  H  S  L  L  P  *  T  G  I  S  V  E  I  I  H  N  L  S  L  R  I  P  I  A  :  C  H  C  L  K  E  A  V  I  P  Q  I  S  L  P  H  G  K  L  L  T  M  T  K  M  P  V  V  V  T  F  K  I  Q  R  P  S  S  Q  R  R  K  M  C  L  I  C  S  *  R  D  L  I  Q  I  L  R  I  S  S  K  K  M  I  H  H  R  R  S  I  P  F  P  C  S  I  Y  P  R  T  V  I  K  P  Q  R  L  N  R  T  H  F  I  L  L  E  Q  *  I  C  R  I  L  K  R  I  R  K  I  Q  N  L  H  I  *  I  Y  R  E  Q  I  I  Y  S  P  C  R  V  *  Q  Q  E  L  V  V  C  H  V  W  Q  Q  W  Q  V  I  </second_frame>
            <third_frame>   R  V  F  I  R  N  L  C  Y  K  Q  *  N  K  E  N  H  Q  I  F  S  L  Y  N  F  P  E  T  G  N  F  A  T  L  L  P  *  S  F  E  K  L  I  R  T  F  M  E  T  *  K  Y  I  N  *  R  I  S  H  F  F  L  F  E  T  N  *  L  L  Q  Y  T  V  I  Y  N  H  F  S  N  F  *  I  N  G  S  V  Y  H  E  A  P  *  R  R  R   : G  *  N  N  A  F  G  G  G  C  G  G  I  H  C  C  P  K  Q  G  Y  R  W  R  *  F  T  I  S  A  F  G  F  R  *  R :   A  I  V  S  R  K  Q  L  Y  L  K  S  V  C  P  M  A  N  C  *  P  *  R  K  C  Q  S  L  *  P  S  R  F  R  D  H  P  A  K  G  G  K  C  V  *  Y  A  V  E  E  T  *  Y  R  F  S  E  S  A  A  K  K  *  F  I  T  G  D  Q  F  P  S  R  A  A  Y  I  P  G  Q  L  S  N  H  R  G  *  T  G  H  T  S  F  F  *  S  S  E  Y  A  E  S  *  K  E  Y  A  K  S  R  I  S  T  S  E  F  T  G  N  K  *  F  T  A  H  A  E  F  D  N  R  N  *  *  S  A  T  C  G  N  S  G  K  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33805" stop="33966"/>
                    <exon start="34095" stop="34200"/>
                    <exon start="36832" stop="37265"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVHSWKPRNTSTNGSPIFSFLKRINCCNIRLYITIFQISESMDPSIMKLLEEDEDETMHSGADVEAFTAALNRDIGGDNSQSQPSDSDSVPLSQGSSYTSNQFAPWQTANHDENASRCNLQDSETIQPKEENVSDMQLKRLDTDSQNQQQKNDSSQEINSLPVQHISQDSYQTTEVEQDTLHSSRAVNMPNPEKNTQNPESPHLNLQGTNNLQPMQSLTTGTSSLPRVATVASN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="42165" PGL_stop="43186"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42165" e_stop="42228"/>
            <exon e_start="42350" e_stop="42485"/>
            <exon e_start="42615" e_stop="42670"/>
            <exon e_start="42755" e_stop="42811"/>
            <exon e_start="42891" e_stop="43031"/>
            <exon e_start="43167" e_stop="43186"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.992" e_score="0.859"/>
          <exon-intron don_prob="0.874" acc_prob="0.908" e_score="0.971"/>
          <exon-intron don_prob="0.386" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.897" e_score="0.982"/>
          <exon-intron don_prob="0.970" acc_prob="0.992" e_score="0.986"/>
          <exon-only e_score="0.850"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.859">
            <gDNA_exon_boundary e_start="42165" e_stop="42228" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.992">
            <gDNA_intron_boundary i_start="42229" i_stop="42349" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="42350" e_stop="42485" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.874" acc_prob="0.908">
            <gDNA_intron_boundary i_start="42486" i_stop="42614" i_length="129"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42615" e_stop="42670" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.386" acc_prob="0.846">
            <gDNA_intron_boundary i_start="42671" i_stop="42754" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="42755" e_stop="42811" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.897">
            <gDNA_intron_boundary i_start="42812" i_stop="42890" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="42891" e_stop="43031" e_length="141"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.992">
            <gDNA_intron_boundary i_start="43032" i_stop="43166" i_length="135"/>
          </intron>
          <exon e_serial="6" e_score="0.850">
            <gDNA_exon_boundary e_start="43167" e_stop="43186" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42165" stop="42228"/>
              <exon start="42350" stop="42485"/>
              <exon start="42615" stop="42670"/>
              <exon start="42755" stop="42811"/>
              <exon start="42891" stop="43031"/>
              <exon start="43167" stop="43186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341677" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCTAGATCAGAGCATTGAACAACTTAATGATGTTACTGCTGTTAGTGGGGTTAATCTAAGG : GAAGAGGAAGAGCAACTATTTTCTGGGCCCAAGGAGGACAGTCGAGTTTCTGAAGCATCTCGTCGAGTTGTGCAAGAAGAAGAGGAAAGGTTGATTTTGCAGAAAATTCCACTTCAGAAGAAATTGACAGAAATCA : TGGCAAAATGTGGTTTAAAGAGTATGAGCAGTGATGTCGAACGGTGCTTGTCGTTG : TGTGTGGAGGAAAGAATGCGTGGACTCATAAGTAGTCTCATCAGACTGTCAAAACAG : AGAGTTGACATTGAGAAGTCAAGACACAGAACAATTGTCACCTCAGATGTTCGTGAAGAAATCATGTCAATCAATCGAAAAGCCCGGGAAGAATGGGAAAGGAAACAAGCTGATGTGGAGAAACTCCAAAAGGCAAATGAA : CCTGAAGGTAGTACTGGAGT</gDNA_template>
            <first_frame> F  P  R  S  E  H  *  T  T  *  *  C  Y  C  C  *  W  G  *  S  K   : G  R  G  R  A  T  I  F  W  A  Q  G  G  Q  S  S  F  *  S  I  S  S  S  C  A  R  R  R  G  K  V  D  F  A  E  N  S  T  S  E  E  I  D  R  N  H :   G  K  M  W  F  K  E  Y  E  Q  *  C  R  T  V  L  V  V   : V  C  G  G  K  N  A  W  T  H  K  *  S  H  Q  T  V  K  T   : E  S  *  H  *  E  V  K  T  Q  N  N  C  H  L  R  C  S  *  R  N  H  V  N  Q  S  K  S  P  G  R  M  G  K  E  T  S  *  C  G  E  T  P  K  G  K  *   : T  *  R  *  Y  W  S </first_frame>
            <second_frame>  F  L  D  Q  S  I  E  Q  L  N  D  V  T  A  V  S  G  V  N  L  R  :  E  E  E  E  Q  L  F  S  G  P  K  E  D  S  R  V  S  E  A  S  R  R  V  V  Q  E  E  E  E  R  L  I  L  Q  K  I  P  L  Q  K  K  L  T  E  I   : M  A  K  C  G  L  K  S  M  S  S  D  V  E  R  C  L  S  L  :  C  V  E  E  R  M  R  G  L  I  S  S  L  I  R  L  S  K  Q  :  R  V  D  I  E  K  S  R  H  R  T  I  V  T  S  D  V  R  E  E  I  M  S  I  N  R  K  A  R  E  E  W  E  R  K  Q  A  D  V  E  K  L  Q  K  A  N  E  :  P  E  G  S  T  G   </second_frame>
            <third_frame>   S  *  I  R  A  L  N  N  L  M  M  L  L  L  L  V  G  L  I  *  G :   K  R  K  S  N  Y  F  L  G  P  R  R  T  V  E  F  L  K  H  L  V  E  L  C  K  K  K  R  K  G  *  F  C  R  K  F  H  F  R  R  N  *  Q  K  S  :  W  Q  N  V  V  *  R  V  *  A  V  M  S  N  G  A  C  R  C :   V  W  R  K  E  C  V  D  S  *  V  V  S  S  D  C  Q  N  R :   E  L  T  L  R  S  Q  D  T  E  Q  L  S  P  Q  M  F  V  K  K  S  C  Q  S  I  E  K  P  G  K  N  G  K  G  N  K  L  M  W  R  N  S  K  R  Q  M  N :   L  K  V  V  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42166" stop="42228"/>
                    <exon start="42350" stop="42485"/>
                    <exon start="42615" stop="42670"/>
                    <exon start="42755" stop="42811"/>
                    <exon start="42891" stop="43031"/>
                    <exon start="43167" stop="43184"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLDQSIEQLNDVTAVSGVNLREEEEQLFSGPKEDSRVSEASRRVVQEEEERLILQKIPLQKKLTEIMAKCGLKSMSSDVERCLSLCVEERMRGLISSLIRLSKQRVDIEKSRHRTIVTSDVREEIMSINRKAREEWERKQADVEKLQKANEPEGSTG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="53415" PGL_stop="52931"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53415" e_stop="52931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="53415" e_stop="52931" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53415" stop="52931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330947" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGGTTTGGGGAGGATAGTGTGTACGCTGCGATACTCCTATCCTTGGAAAGGAAGTGTTCAAGTTCGTGTATAGATTTATTCTCTTAATATCTTGTTAATGAGTCTTTAATAGGATAATTATTTTCTTACAATTCTGACATTAGCTTTTAAAACATAACTGACCATTTGAGTAGTTTTTGTATTCAATTTGTGCAATTGTGACATATTTTTTAATAGCTTTGAATAGTGGTTTTTACATTGTTATGTATTTGGATGTTACAAGCTATTAGATGTGAAGCGTCTGTCCACTCCTTTGCCTAGGTATGCTCCTATGCATTGGCTTGGGAAGTGTGGAAAAAGTGGACGTAATCTTCTCCTTTATAATGTCATATACACGTCAAGATTAAAAAAGGAGAAAATTTTCATACCATTTTCGTGATTATTTTAGCAAGTAGCAAGTCCGAAATTTTCTTTGTTTTTATCAGAACAATATATGTTGAACAAC</gDNA_template>
            <first_frame> G  V  W  G  G  *  C  V  R  C  D  T  P  I  L  G  K  E  V  F  K  F  V  Y  R  F  I  L  L  I  S  C  *  *  V  F  N  R  I  I  I  F  L  Q  F  *  H  *  L  L  K  H  N  *  P  F  E  *  F  L  Y  S  I  C  A  I  V  T  Y  F  L  I  A  L  N  S  G  F  Y  I  V  M  Y  L  D  V  T  S  Y  *  M  *  S  V  C  P  L  L  C  L  G  M  L  L  C  I  G  L  G  S  V  E  K  V  D  V  I  F  S  F  I  M  S  Y  T  R  Q  D  *  K  R  R  K  F  S  Y  H  F  R  D  Y  F  S  K  *  Q  V  R  N  F  L  C  F  Y  Q  N  N  I  C  *  T   </first_frame>
            <second_frame>  G  F  G  E  D  S  V  Y  A  A  I  L  L  S  L  E  R  K  C  S  S  S  C  I  D  L  F  S  *  Y  L  V  N  E  S  L  I  G  *  L  F  S  Y  N  S  D  I  S  F  *  N  I  T  D  H  L  S  S  F  C  I  Q  F  V  Q  L  *  H  I  F  *  *  L  *  I  V  V  F  T  L  L  C  I  W  M  L  Q  A  I  R  C  E  A  S  V  H  S  F  A  *  V  C  S  Y  A  L  A  W  E  V  W  K  K  W  T  *  S  S  P  L  *  C  H  I  H  V  K  I  K  K  G  E  N  F  H  T  I  F  V  I  I  L  A  S  S  K  S  E  I  F  F  V  F  I  R  T  I  Y  V  E  Q  </second_frame>
            <third_frame>   G  L  G  R  I  V  C  T  L  R  Y  S  Y  P  W  K  G  S  V  Q  V  R  V  *  I  Y  S  L  N  I  L  L  M  S  L  *  *  D  N  Y  F  L  T  I  L  T  L  A  F  K  T  *  L  T  I  *  V  V  F  V  F  N  L  C  N  C  D  I  F  F  N  S  F  E  *  W  F  L  H  C  Y  V  F  G  C  Y  K  L  L  D  V  K  R  L  S  T  P  L  P  R  Y  A  P  M  H  W  L  G  K  C  G  K  S  G  R  N  L  L  L  Y  N  V  I  Y  T  S  R  L  K  K  E  K  I  F  I  P  F  S  *  L  F  *  Q  V  A  S  P  K  F  S  L  F  L  S  E  Q  Y  M  L  N  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0008K13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="73096" PGL_stop="76922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73096" e_stop="74343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="73096" e_stop="74343" e_length="1248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73096" stop="74343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320754" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGAAAAGGAAGATGATGACTTTACGGTCGAAAAGGTTTGTGAAAATCTTGATTTGAATAAGCACTGTGGTGGTGAAAGTGATGATCATGATGATGCAGATGTGTGCAGCAAAATTGAGTTGATGGAGGAAAAGGATGAGGTTAAGAAGATTGATGAGTTGCTTGTTGTGAAGGAGAAAGATACCGCGAATGCTGTGGTTGTTGATGAAGTCAAAGTAGGTGAAAATGAGGTGGTTGAGGTAGGAGGTGGGTTGAGTAAAGGGGATGATGAGAAGACGGATAAGATGGCGATGGATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATGGTATAACCTCATACTCCAAAAAATATGAGCTTTAGCATATTGTTTTGTACTCTATTTCAATTGCATTAATTTTTTAAAATGTTCTTTGATTTGTTTGAACCAAAAAAAGTAATTTCTGTAGCGAATGCTTGCGTTTATCTAGTTAGTTGGATATTTGTGATTATTGGATTAGTAGAAGCTTTTGTAGGAGAGGACACAATCAATATATACTAAAGAAGATTAGAAGGAACACTGCTGAAAATGGGGAAGATAAATCACCATCTCACATATAGTTTGATCGACTTTGAGTTTAATCATTCACGATTGAATTCCTTAACGTTGTTGTATGATCTGATCTAAAGTAGCTTTCCCCTTGCATAGTAGAACTAGCATTTATTCTTTACTTTTTTTCATCAGATCTACCGTATCCTGGTTTTACCAGAGAATAGTTTGACCAGAAACTAGAATAGATATCTATAGCCTAAATTTCGTAGTTAAATTGAGAGGACGGAGTCAGGAAACTAAACATGATATTTAGTACATTTATATCATAAGAAACTTGTGTTAGAATTTAGAAAAAGATACCTAGCATAAATTCAATAAGCAGTAAAGGACAGACCTTCAAACTACTTTCGGGTGTAGTTTGATTGCTAGTTATACAACAGGAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGA</gDNA_template>
            <first_frame> G  *  K  G  R  *  *  L  Y  G  R  K  G  L  *  K  S  *  F  E  *  A  L  W  W  *  K  *  *  S  *  *  C  R  C  V  Q  Q  N  *  V  D  G  G  K  G  *  G  *  E  D  *  *  V  A  C  C  E  G  E  R  Y  R  E  C  C  G  C  *  *  S  Q  S  R  *  K  *  G  G  *  G  R  R  W  V  E  *  R  G  *  *  E  D  G  *  D  G  D  G  *  R  Y  *  *  *  L  G  G  N  *  E  K  *  I  G  G  G  I  C  *  S  C  *  L  C  G  W  G  K  W  K  E  *  W  Y  G  E  Y  G  E  *  I  D  D  A  I  V  W  T  P  E  N  C  N  R  R  T  L  L  R  T  S  T  N  G  I  E  S  L  C  P  C  Q  M  V  *  P  H  T  P  K  N  M  S  F  S  I  L  F  C  T  L  F  Q  L  H  *  F  F  K  M  F  F  D  L  F  E  P  K  K  V  I  S  V  A  N  A  C  V  Y  L  V  S  W  I  F  V  I  I  G  L  V  E  A  F  V  G  E  D  T  I  N  I  Y  *  R  R  L  E  G  T  L  L  K  M  G  K  I  N  H  H  L  T  Y  S  L  I  D  F  E  F  N  H  S  R  L  N  S  L  T  L  L  Y  D  L  I  *  S  S  F  P  L  A  *  *  N  *  H  L  F  F  T  F  F  H  Q  I  Y  R  I  L  V  L  P  E  N  S  L  T  R  N  *  N  R  Y  L  *  P  K  F  R  S  *  I  E  R  T  E  S  G  N  *  T  *  Y  L  V  H  L  Y  H  K  K  L  V  L  E  F  R  K  R  Y  L  A  *  I  Q  *  A  V  K  D  R  P  S  N  Y  F  R  V  *  F  D  C  *  L  Y  N  R  N  E  S  C  F  L  *  V  M  E  D  N  N  S  I  V  Q  G  M  R  G  R  K  W  E  A  * </first_frame>
            <second_frame>  V  E  K  E  D  D  D  F  T  V  E  K  V  C  E  N  L  D  L  N  K  H  C  G  G  E  S  D  D  H  D  D  A  D  V  C  S  K  I  E  L  M  E  E  K  D  E  V  K  K  I  D  E  L  L  V  V  K  E  K  D  T  A  N  A  V  V  V  D  E  V  K  V  G  E  N  E  V  V  E  V  G  G  G  L  S  K  G  D  D  E  K  T  D  K  M  A  M  D  E  D  I  D  D  D  W  E  G  I  E  R  S  E  L  E  E  E  F  A  K  A  V  N  F  V  D  G  G  N  G  K  N  S  G  M  E  N  M  G  S  E  L  M  M  Q  L  Y  G  L  Q  K  I  A  I  E  G  P  C  Y  E  P  Q  P  M  A  L  K  V  Y  A  R  A  K  W  Y  N  L  I  L  Q  K  I  *  A  L  A  Y  C  F  V  L  Y  F  N  C  I  N  F  L  K  C  S  L  I  C  L  N  Q  K  K  *  F  L  *  R  M  L  A  F  I  *  L  V  G  Y  L  *  L  L  D  *  *  K  L  L  *  E  R  T  Q  S  I  Y  T  K  E  D  *  K  E  H  C  *  K  W  G  R  *  I  T  I  S  H  I  V  *  S  T  L  S  L  I  I  H  D  *  I  P  *  R  C  C  M  I  *  S  K  V  A  F  P  L  H  S  R  T  S  I  Y  S  L  L  F  F  I  R  S  T  V  S  W  F  Y  Q  R  I  V  *  P  E  T  R  I  D  I  Y  S  L  N  F  V  V  K  L  R  G  R  S  Q  E  T  K  H  D  I  *  Y  I  Y  I  I  R  N  L  C  *  N  L  E  K  D  T  *  H  K  F  N  K  Q  *  R  T  D  L  Q  T  T  F  G  C  S  L  I  A  S  Y  T  T  G  M  K  A  A  F  C  K  *  W  R  T  I  I  P  L  C  K  E  C  V  A  E  N  G  K  H   </second_frame>
            <third_frame>   L  K  R  K  M  M  T  L  R  S  K  R  F  V  K  I  L  I  *  I  S  T  V  V  V  K  V  M  I  M  M  M  Q  M  C  A  A  K  L  S  *  W  R  K  R  M  R  L  R  R  L  M  S  C  L  L  *  R  R  K  I  P  R  M  L  W  L  L  M  K  S  K  *  V  K  M  R  W  L  R  *  E  V  G  *  V  K  G  M  M  R  R  R  I  R  W  R  W  M  K  I  L  M  M  I  G  R  E  L  R  E  V  N  W  R  R  N  L  L  K  L  L  T  L  W  M  G  E  M  E  R  I  V  V  W  R  I  W  G  V  N  *  *  C  N  C  M  D  S  R  K  L  Q  S  K  D  L  V  T  N  L  N  Q  W  H  *  K  S  M  P  V  P  N  G  I  T  S  Y  S  K  K  Y  E  L  *  H  I  V  L  Y  S  I  S  I  A  L  I  F  *  N  V  L  *  F  V  *  T  K  K  S  N  F  C  S  E  C  L  R  L  S  S  *  L  D  I  C  D  Y  W  I  S  R  S  F  C  R  R  G  H  N  Q  Y  I  L  K  K  I  R  R  N  T  A  E  N  G  E  D  K  S  P  S  H  I  *  F  D  R  L  *  V  *  S  F  T  I  E  F  L  N  V  V  V  *  S  D  L  K  *  L  S  P  C  I  V  E  L  A  F  I  L  Y  F  F  S  S  D  L  P  Y  P  G  F  T  R  E  *  F  D  Q  K  L  E  *  I  S  I  A  *  I  S  *  L  N  *  E  D  G  V  R  K  L  N  M  I  F  S  T  F  I  S  *  E  T  C  V  R  I  *  K  K  I  P  S  I  N  S  I  S  S  K  G  Q  T  F  K  L  L  S  G  V  V  *  L  L  V  I  Q  Q  E  *  K  L  L  S  V  S  D  G  G  Q  *  F  H  C  A  R  N  A  W  Q  K  M  G  S  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73097" stop="73645"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEKEDDDFTVEKVCENLDLNKHCGGESDDHDDADVCSKIELMEEKDEVKKIDELLVVKEKDTANAVVVDEVKVGENEVVEVGGGLSKGDDEKTDKMAMDEDIDDDWEGIERSELEEEFAKAVNFVDGGNGKNSGMENMGSELMMQLYGLQKIAIEGPCYEPQPMALKVYARAKWYNLILQKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73391" e_stop="73617"/>
            <exon e_start="74262" e_stop="74417"/>
            <exon e_start="74510" e_stop="74601"/>
            <exon e_start="74721" e_stop="74766"/>
            <exon e_start="76668" e_stop="76909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.048" e_score="0.996"/>
          <exon-intron don_prob="0.767" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="73391" e_stop="73617" e_length="227"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.048">
            <gDNA_intron_boundary i_start="73618" i_stop="74261" i_length="644"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74262" e_stop="74417" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.767" acc_prob="0.994">
            <gDNA_intron_boundary i_start="74418" i_stop="74509" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74510" e_stop="74601" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="74602" i_stop="74720" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74721" e_stop="74766" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74767" i_stop="76667" i_length="1901"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="76668" e_stop="76909" e_length="242"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73391" stop="73617"/>
              <exon start="74262" stop="74417"/>
              <exon start="74510" stop="74601"/>
              <exon start="74721" stop="74766"/>
              <exon start="76668" stop="76909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATG : GAATGAAAGCTGCTTTCTGTAAGTGATGGAGGACAATAATTCCATTGTGCAAGGAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAG : AATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAG : GACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAG : GAATAGGTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCGTTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGTTATTTCCGCTAAATAAAAACGACACTATATTTAGAGAAACAATGATCTCCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCATTGGT</gDNA_template>
            <first_frame> D  E  D  I  D  D  D  W  E  G  I  E  R  S  E  L  E  E  E  F  A  K  A  V  N  F  V  D  G  G  N  G  K  N  S  G  M  E  N  M  G  S  E  L  M  M  Q  L  Y  G  L  Q  K  I  A  I  E  G  P  C  Y  E  P  Q  P  M  A  L  K  V  Y  A  R  A  K  W :   N  E  S  C  F  L  *  V  M  E  D  N  N  S  I  V  Q  G  M  R  G  R  K  W  E  A  *  I  R  R  W  P  W  S  S  I  L  S  F  C  Q  T  M  S  P  I  G  H  I  I  V  R :   M  I  A  K  *  G  L  Q  K  L  K  C  L  E  I  Q  I  Q  F  L  I  L  L  M  I  Q  A  K  M  K   : G  H  R  K  R  T  V  L  Q  K  E  I  K  V  K  R :   N  R  Y  E  N  S  P  A  G  I  M  Q  V  L  L  Q  E  F  Q  V  V  A  A  H  N  T  T  W  F  S  L  L  F  P  Y  Q  I  I  M  H  L  L  C  I  C  I  *  L  F  P  L  N  K  N  D  T  I  F  R  E  T  M  I  S  L  F  Q  *  L  F  I  I  *  S  E  *  *  S  H  W  </first_frame>
            <second_frame>  M  K  I  L  M  M  I  G  R  E  L  R  E  V  N  W  R  R  N  L  L  K  L  L  T  L  W  M  G  E  M  E  R  I  V  V  W  R  I  W  G  V  N  *  *  C  N  C  M  D  S  R  K  L  Q  S  K  D  L  V  T  N  L  N  Q  W  H  *  K  S  M  P  V  P  N   : G  M  K  A  A  F  C  K  *  W  R  T  I  I  P  L  C  K  E  C  V  A  E  N  G  K  H  E  S  G  G  G  H  G  A  V  Y  *  A  F  V  R  P  C  P  Q  L  D  T  S  *  *   : E  *  L  R  S  R  V  F  R  N  *  N  A  W  R  S  R  S  N  S  *  F  F  *  *  Y  R  Q  R  *  K  :  D  T  G  N  E  P  C  C  R  R  R  *  R  *  K   : G  I  G  M  R  T  H  Q  Q  A  *  C  R  Y  C  F  K  N  F  R  S  L  Q  L  I  T  Q  L  G  S  P  Y  C  S  L  I  R  L  L  C  I  Y  S  A  Y  V  Y  S  Y  F  R  *  I  K  T  T  L  Y  L  E  K  Q  *  S  P  C  F  N  D  F  L  L  Y  E  V  N  D  N  L  I  G </second_frame>
            <third_frame>   *  R  Y  *  *  *  L  G  G  N  *  E  K  *  I  G  G  G  I  C  *  S  C  *  L  C  G  W  G  K  W  K  E  *  W  Y  G  E  Y  G  E  *  I  D  D  A  I  V  W  T  P  E  N  C  N  R  R  T  L  L  R  T  S  T  N  G  I  E  S  L  C  P  C  Q  M  :  E  *  K  L  L  S  V  S  D  G  G  Q  *  F  H  C  A  R  N  A  W  Q  K  M  G  S  M  N  Q  E  V  A  M  E  Q  Y  I  K  L  L  S  D  H  V  P  N  W  T  H  H  S  K  :  N  D  C  E  V  G  S  S  E  T  K  M  P  G  D  P  D  P  I  P  D  S  S  N  D  T  G  K  D  E  R :   T  Q  E  T  N  R  A  A  E  G  D  K  G  E  K  :  E  *  V  *  E  L  T  S  R  H  N  A  G  T  A  S  R  I  S  G  R  C  S  S  *  H  N  L  V  L  P  I  V  P  L  S  D  Y  Y  A  S  T  L  H  M  Y  I  V  I  S  A  K  *  K  R  H  Y  I  *  R  N  N  D  L  L  V  S  M  T  F  Y  Y  M  K  *  M  I  I  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74526" stop="74601"/>
                    <exon start="74721" stop="74766"/>
                    <exon start="76668" stop="76809"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLQKLKCLEIQIQFLILLMIQAKMKGHRKRTVLQKEIKVKRNRYENSPAGIMQVLLQEFQVVAAHNTTWFSLLFPYQIIMHLLCICI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74301" stop="74417"/>
                    <exon start="74510" stop="74601"/>
                    <exon start="74721" stop="74766"/>
                    <exon start="76668" stop="76673"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHCARNAWQKMGSMNQEVAMEQYIKLLSDHVPNWTHHSKNDCEVGSSETKMPGDPDPIPDSSNDTGKDERTQETNRAAEGDKGEKE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73391" stop="73617"/>
                    <exon start="74262" stop="74283"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEDIDDDWEGIERSELEEEFAKAVNFVDGGNGKNSGMENMGSELMMQLYGLQKIAIEGPCYEPQPMALKVYARAKWNESCFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="73375" e_stop="73617"/>
            <exon e_start="74315" e_stop="74417"/>
            <exon e_start="74510" e_stop="74601"/>
            <exon e_start="74721" e_stop="74766"/>
            <exon e_start="76668" e_stop="76922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.763" e_score="0.996"/>
          <exon-intron don_prob="0.767" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="73375" e_stop="73617" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.763">
            <gDNA_intron_boundary i_start="73618" i_stop="74314" i_length="697"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74315" e_stop="74417" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.767" acc_prob="0.994">
            <gDNA_intron_boundary i_start="74418" i_stop="74509" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74510" e_stop="74601" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="74602" i_stop="74720" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74721" e_stop="74766" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74767" i_stop="76667" i_length="1901"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="76668" e_stop="76922" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73375" stop="73617"/>
              <exon start="74315" stop="74417"/>
              <exon start="74510" stop="74601"/>
              <exon start="74721" stop="74766"/>
              <exon start="76668" stop="76922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320756" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATAAGATGGCGATGGATGAAGATATTGATGATGATTGGGAGGGAATTGAGAGAAGTGAATTGGAGGAGGAATTTGCTAAAGCTGTTAACTTTGTGGATGGGGGAAATGGAAAGAATAGTGGTATGGAGAATATGGGGAGTGAATTGATGATGCAATTGTATGGACTCCAGAAAATTGCAATCGAAGGACCTTGTTACGAACCTCAACCAATGGCATTGAAAGTCTATGCCCGTGCCAAATG : GAATGCGTGGCAGAAAATGGGAAGCATGAATCAGGAGGTGGCCATGGAGCAGTATATTAAGCTTTTGTCAGACCATGTCCCCAATTGGACACATCATAGTAAG : AATGATTGCGAAGTAGGGTCTTCAGAAACTAAAATGCCTGGAGATCCAGATCCAATTCCTGATTCTTCTAATGATACAGGCAAAGATGAAAG : GACACAGGAAACGAACCGTGCTGCAGAAGGAGATAAAGGTGAAAAG : GAATAGGTATGAGAACTCACCAGCAGGCATAATGCAGGTACTGCTTCAAGAATTTCAGGTCGTTGCAGCTCATAACACAACTTGGTTCTCCCTATTGTTCCCTTATCAGATTATTATGCATCTACTCTGCATATGTATATAGTTATTTCCGCTAAATAAAAACGACACTATATTTAGAGAAACAATGATCTCCTTGTTTCAATGACTTTTTATTATATGAAGTGAATGATAATCTCATTGGTTATTATTATTATT</gDNA_template>
            <first_frame> G  *  D  G  D  G  *  R  Y  *  *  *  L  G  G  N  *  E  K  *  I  G  G  G  I  C  *  S  C  *  L  C  G  W  G  K  W  K  E  *  W  Y  G  E  Y  G  E  *  I  D  D  A  I  V  W  T  P  E  N  C  N  R  R  T  L  L  R  T  S  T  N  G  I  E  S  L  C  P  C  Q  M  :  E  C  V  A  E  N  G  K  H  E  S  G  G  G  H  G  A  V  Y  *  A  F  V  R  P  C  P  Q  L  D  T  S  *  *   : E  *  L  R  S  R  V  F  R  N  *  N  A  W  R  S  R  S  N  S  *  F  F  *  *  Y  R  Q  R  *  K  :  D  T  G  N  E  P  C  C  R  R  R  *  R  *  K   : G  I  G  M  R  T  H  Q  Q  A  *  C  R  Y  C  F  K  N  F  R  S  L  Q  L  I  T  Q  L  G  S  P  Y  C  S  L  I  R  L  L  C  I  Y  S  A  Y  V  Y  S  Y  F  R  *  I  K  T  T  L  Y  L  E  K  Q  *  S  P  C  F  N  D  F  L  L  Y  E  V  N  D  N  L  I  G  Y  Y  Y  Y  </first_frame>
            <second_frame>  D  K  M  A  M  D  E  D  I  D  D  D  W  E  G  I  E  R  S  E  L  E  E  E  F  A  K  A  V  N  F  V  D  G  G  N  G  K  N  S  G  M  E  N  M  G  S  E  L  M  M  Q  L  Y  G  L  Q  K  I  A  I  E  G  P  C  Y  E  P  Q  P  M  A  L  K  V  Y  A  R  A  K  W :   N  A  W  Q  K  M  G  S  M  N  Q  E  V  A  M  E  Q  Y  I  K  L  L  S  D  H  V  P  N  W  T  H  H  S  K  :  N  D  C  E  V  G  S  S  E  T  K  M  P  G  D  P  D  P  I  P  D  S  S  N  D  T  G  K  D  E  R :   T  Q  E  T  N  R  A  A  E  G  D  K  G  E  K  :  E  *  V  *  E  L  T  S  R  H  N  A  G  T  A  S  R  I  S  G  R  C  S  S  *  H  N  L  V  L  P  I  V  P  L  S  D  Y  Y  A  S  T  L  H  M  Y  I  V  I  S  A  K  *  K  R  H  Y  I  *  R  N  N  D  L  L  V  S  M  T  F  Y  Y  M  K  *  M  I  I  S  L  V  I  I  I  I </second_frame>
            <third_frame>   I  R  W  R  W  M  K  I  L  M  M  I  G  R  E  L  R  E  V  N  W  R  R  N  L  L  K  L  L  T  L  W  M  G  E  M  E  R  I  V  V  W  R  I  W  G  V  N  *  *  C  N  C  M  D  S  R  K  L  Q  S  K  D  L  V  T  N  L  N  Q  W  H  *  K  S  M  P  V  P  N   : G  M  R  G  R  K  W  E  A  *  I  R  R  W  P  W  S  S  I  L  S  F  C  Q  T  M  S  P  I  G  H  I  I  V  R :   M  I  A  K  *  G  L  Q  K  L  K  C  L  E  I  Q  I  Q  F  L  I  L  L  M  I  Q  A  K  M  K   : G  H  R  K  R  T  V  L  Q  K  E  I  K  V  K  R :   N  R  Y  E  N  S  P  A  G  I  M  Q  V  L  L  Q  E  F  Q  V  V  A  A  H  N  T  T  W  F  S  L  L  F  P  Y  Q  I  I  M  H  L  L  C  I  C  I  *  L  F  P  L  N  K  N  D  T  I  F  R  E  T  M  I  S  L  F  Q  *  L  F  I  I  *  S  E  *  *  S  H  W  L  L  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73376" stop="73617"/>
                    <exon start="74315" stop="74417"/>
                    <exon start="74510" stop="74601"/>
                    <exon start="74721" stop="74766"/>
                    <exon start="76668" stop="76673"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKMAMDEDIDDDWEGIERSELEEEFAKAVNFVDGGNGKNSGMENMGSELMMQLYGLQKIAIEGPCYEPQPMALKVYARAKWNAWQKMGSMNQEVAMEQYIKLLSDHVPNWTHHSKNDCEVGSSETKMPGDPDPIPDSSNDTGKDERTQETNRAAEGDKGEKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="77074" PGL_stop="76865"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77074" e_stop="76865"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="77074" e_stop="76865" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77074" stop="76865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTAATATTCCACAAGTGTCTGCAGGGAGGAGGAACTAAGAAGGAACAATACTGGTATCTCATGTAAAATAAGGACAATCTTTACTACTAAAGTTAGTTTACCTTACACAATTGTAAGCAACAAAGTAGGTCCAGAACCATAAAGGATATAATAATAATAATAACCAATGAGATTATCATTCACTTCATATAATAAAAAGTCATTGAA</gDNA_template>
            <first_frame> S  L  I  F  H  K  C  L  Q  G  G  G  T  K  K  E  Q  Y  W  Y  L  M  *  N  K  D  N  L  Y  Y  *  S  *  F  T  L  H  N  C  K  Q  Q  S  R  S  R  T  I  K  D  I  I  I  I  I  T  N  E  I  I  I  H  F  I  *  *  K  V  I  E </first_frame>
            <second_frame>  V  *  Y  S  T  S  V  C  R  E  E  E  L  R  R  N  N  T  G  I  S  C  K  I  R  T  I  F  T  T  K  V  S  L  P  Y  T  I  V  S  N  K  V  G  P  E  P  *  R  I  *  *  *  *  *  P  M  R  L  S  F  T  S  Y  N  K  K  S  L   </second_frame>
            <third_frame>   F  N  I  P  Q  V  S  A  G  R  R  N  *  E  G  T  I  L  V  S  H  V  K  *  G  Q  S  L  L  L  K  L  V  Y  L  T  Q  L  *  A  T  K  *  V  Q  N  H  K  G  Y  N  N  N  N  N  Q  *  D  Y  H  S  L  H  I  I  K  S  H  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0008K13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="82841" PGL_stop="85540"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82841" e_stop="85540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="82841" e_stop="85540" e_length="2700"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82841" stop="85540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322005" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAGCATTACATATCATAGTCAGTTAGAGCCTATCACTCAAAACTCCAGCCCATCTCCACCACAGGAGGAAAAAAAAAAAAGCTTTTCTTTTCAGTAGAGATTTAACTTTCACCTTCGACACTAAGAACTCACATAAAGATGGAAAGACTCAGGCTCATGTTTCTTTTAATACTAATGGTAGTGTTGTTTCATGTGTTTGTTGATGCAAGACAGAACCAGAAGAAGACTTATATAATTCACATGGACAAGTTCAACATGCCTGCTGATTTTGATGATCATACTCAGTGGTATGACTCATCATTGAAGTCAGTATCCAAGAGCGCCAACATGCTTTACACCTACAACAGTGTCATCCATGGCTACTCAACACAGCTAACAGCTGATGAAGCCAAAGCACTTGCACAGCAACCGGGAATTCTCTTGGTCCACGAGGAAGTGATATACGAGCTTCACACCACTCGATCCCCTACGTTTCTGGGACTTGAAGGACGTGAAAGTAGATCATTCTTTCCTCAGACTGAAGCAAGGAGTGAGGTCATTATTGGTGTGCTGGACACAGGTGTTTGGCCTGAATCAAAAAGTTTTGATGACACTGGACTAGGTCCAGTCCCTGCGAGCTGGAAGGGTAAGTGTCAAACTGGCAAGAACTTCGACGCATCAAGCTGTAATCGGAAACTTATTGGTGCGAGGTTTTTCTCACAAGGTTATGAAGCAGCTTTTGGGGCAATCGATGAGACCATTGAATCCAAGTCACCAAGGGACGATGAAGGCCATGGCACACACACTGCAACTACAGCAGCTGGCTCGGTTGTAACCGGAGCTAGCCTCTTGGGTTATGCAACTGGTACAGCACGTGGGATGGCTTCACACGCAAGGGTGGCAGCGTACAAGGTATGTTGGACCGGAGGATGTTTTAGCAGCGACATACTGGCAGGGATGGACCAGGCTGTCATAGATGGTGTAAATGTGCTCTCACTGTCCCTTGGTGGCACAATTTCTGATTATCATAGGGACATAGTTGCAATCGGAGCATTTTCTGCAGCATCTCAAGGGATCTTTGTCTCATGCTCAGCGGGGAATGGTGGTCCAAGCTCTGGGACGCTATCCAACGTTGCACCATGGATAACTACTGTAGGTGCTGGAACCATGGACCGTGAATTTCCAGCATACATTGGCATTGGAAATGGGAAAAAACTCAATGGAGTATCACTTTACAGTGGAAAGGCATTGCCTAGTTCTGTGATGCCACTGGTGTATGCTGGAAATGTCAGCCAATCATCTAATGGAAATTTATGCACCAGTGGTAGTCTAATTCCAGAAAAAGTTGCTGGAAAAATTGTCGTCTGTGACCGGGGGATGAATGCAAGGGCACAAAAGGGTTTGGTTGTGAAGGATGCTGGTGGAATAGGGATGATTCTGGCAAACACAGACACTTACGGAGATGAGTTGGTTGCTGATGCACACCTCATACCTACAGCTGCAGTTGGTCAAACTGCGGGCAACTTGATCAAGCAGTACATAGCTTCTAACAGCAATCCAACTGCCACAATTGCATTTGGAGGAACCAAGTTGGGTGTTCAACCATCGCCAGTTGTTGCAGCTTTTAGTTCCAGAGGGCCAAACCCAATCACACCAGATGTACTCAAACCTGATTTGATAGCACCAGGTGTCAATATTCTTGCTGGCTGGACAGGGAAAGTTGGACCAACTGGCTTGCAAGAAGACACCAGGAATGTAGGCTTCAACATCATCTCTGGAACTTCCATGTCATGTCCCCATGTAAGTGGGCTAGCAGCACTACTCAAAGCTACCCATCCAGAATGGAGTCCAGCAGCTATAAGGTCAGCACTGATGACTACAAGTTATAGCACATACAAAAACGGAAAAACAATCGAGGATGTTGCAACAGGAATGTCATCTACACCATTTGATTATGGTGCTGGACATGTGAATCCAACAGCAGCTGTCAGTCCTGGTTTAGTGTATGATCTAACAGTTGATGACTATATAAACTTTCTATGTGCCTTGGACTACAGCCCGAGTATGATCAAGGTCATTGCAAAAAGAGACATCTCCTGTGACGAAAATAAGGAGTATAGAGTTGCTGATCTTAATTACCCATCTTTTTCCATTCCTATGGAAACGGCCTGGGGTGAACATGCAGATAGTAGTACCCCCACCGTGACCAGATACACAAGGACTCTAACAAATGTGGGAAACCCAGCTACATACAAGGCCTCAGTCTCTTCTGAAACACAGGACGTGAAGATTCTGGTTGAGCCACAAACACTTACTTTCAGCCGAAAGAACGAAAAGAAAACCTACACTGTGACATTCACTGCTACTTCCAAGCCATCAGGCACAACCAGCTTCGCTCGACTGGAGTGGTCAGATGGACAACACGTTGTTGCAAGCCCAATTGCTTTCAGCTGGACATGATTCTGCTAGTTCTAAGTCATTCACCACAAATGTACAAGTGCTAATAGTCCTTTTTAAATAATTACTAGTGTGCAGCAGTTACTCCTCTAATATTTCACCAACTGAACAAGTATCCTGACCTATAATTAAGAAGCCTAGGCAATTCTAGGCAATGTTGGTTGATTTGCCCAGCAAAAGGCTGGTGCTGTATTTGCCAGATATAATTATGTACTGAACCACACAATACAGGTGGATATTATTTGGCTTTATTTCTTGTCTTA</gDNA_template>
            <first_frame> L  A  L  H  I  I  V  S  *  S  L  S  L  K  T  P  A  H  L  H  H  R  R  K  K  K  K  A  F  L  F  S  R  D  L  T  F  T  F  D  T  K  N  S  H  K  D  G  K  T  Q  A  H  V  S  F  N  T  N  G  S  V  V  S  C  V  C  *  C  K  T  E  P  E  E  D  L  Y  N  S  H  G  Q  V  Q  H  A  C  *  F  *  *  S  Y  S  V  V  *  L  I  I  E  V  S  I  Q  E  R  Q  H  A  L  H  L  Q  Q  C  H  P  W  L  L  N  T  A  N  S  *  *  S  Q  S  T  C  T  A  T  G  N  S  L  G  P  R  G  S  D  I  R  A  S  H  H  S  I  P  Y  V  S  G  T  *  R  T  *  K  *  I  I  L  S  S  D  *  S  K  E  *  G  H  Y  W  C  A  G  H  R  C  L  A  *  I  K  K  F  *  *  H  W  T  R  S  S  P  C  E  L  E  G  *  V  S  N  W  Q  E  L  R  R  I  K  L  *  S  E  T  Y  W  C  E  V  F  L  T  R  L  *  S  S  F  W  G  N  R  *  D  H  *  I  Q  V  T  K  G  R  *  R  P  W  H  T  H  C  N  Y  S  S  W  L  G  C  N  R  S  *  P  L  G  L  C  N  W  Y  S  T  W  D  G  F  T  R  K  G  G  S  V  Q  G  M  L  D  R  R  M  F  *  Q  R  H  T  G  R  D  G  P  G  C  H  R  W  C  K  C  A  L  T  V  P  W  W  H  N  F  *  L  S  *  G  H  S  C  N  R  S  I  F  C  S  I  S  R  D  L  C  L  M  L  S  G  E  W  W  S  K  L  W  D  A  I  Q  R  C  T  M  D  N  Y  C  R  C  W  N  H  G  P  *  I  S  S  I  H  W  H  W  K  W  E  K  T  Q  W  S  I  T  L  Q  W  K  G  I  A  *  F  C  D  A  T  G  V  C  W  K  C  Q  P  I  I  *  W  K  F  M  H  Q  W  *  S  N  S  R  K  S  C  W  K  N  C  R  L  *  P  G  D  E  C  K  G  T  K  G  F  G  C  E  G  C  W  W  N  R  D  D  S  G  K  H  R  H  L  R  R  *  V  G  C  *  C  T  P  H  T  Y  S  C  S  W  S  N  C  G  Q  L  D  Q  A  V  H  S  F  *  Q  Q  S  N  C  H  N  C  I  W  R  N  Q  V  G  C  S  T  I  A  S  C  C  S  F  *  F  Q  R  A  K  P  N  H  T  R  C  T  Q  T  *  F  D  S  T  R  C  Q  Y  S  C  W  L  D  R  E  S  W  T  N  W  L  A  R  R  H  Q  E  C  R  L  Q  H  H  L  W  N  F  H  V  M  S  P  C  K  W  A  S  S  T  T  Q  S  Y  P  S  R  M  E  S  S  S  Y  K  V  S  T  D  D  Y  K  L  *  H  I  Q  K  R  K  N  N  R  G  C  C  N  R  N  V  I  Y  T  I  *  L  W  C  W  T  C  E  S  N  S  S  C  Q  S  W  F  S  V  *  S  N  S  *  *  L  Y  K  L  S  M  C  L  G  L  Q  P  E  Y  D  Q  G  H  C  K  K  R  H  L  L  *  R  K  *  G  V  *  S  C  *  S  *  L  P  I  F  F  H  S  Y  G  N  G  L  G  *  T  C  R  *  *  Y  P  H  R  D  Q  I  H  K  D  S  N  K  C  G  K  P  S  Y  I  Q  G  L  S  L  F  *  N  T  G  R  E  D  S  G  *  A  T  N  T  Y  F  Q  P  K  E  R  K  E  N  L  H  C  D  I  H  C  Y  F  Q  A  I  R  H  N  Q  L  R  S  T  G  V  V  R  W  T  T  R  C  C  K  P  N  C  F  Q  L  D  M  I  L  L  V  L  S  H  S  P  Q  M  Y  K  C  *  *  S  F  L  N  N  Y  *  C  A  A  V  T  P  L  I  F  H  Q  L  N  K  Y  P  D  L  *  L  R  S  L  G  N  S  R  Q  C  W  L  I  C  P  A  K  G  W  C  C  I  C  Q  I  *  L  C  T  E  P  H  N  T  G  G  Y  Y  L  A  L  F  L  V  L </first_frame>
            <second_frame>  *  H  Y  I  S  *  S  V  R  A  Y  H  S  K  L  Q  P  I  S  T  T  G  G  K  K  K  K  L  F  F  S  V  E  I  *  L  S  P  S  T  L  R  T  H  I  K  M  E  R  L  R  L  M  F  L  L  I  L  M  V  V  L  F  H  V  F  V  D  A  R  Q  N  Q  K  K  T  Y  I  I  H  M  D  K  F  N  M  P  A  D  F  D  D  H  T  Q  W  Y  D  S  S  L  K  S  V  S  K  S  A  N  M  L  Y  T  Y  N  S  V  I  H  G  Y  S  T  Q  L  T  A  D  E  A  K  A  L  A  Q  Q  P  G  I  L  L  V  H  E  E  V  I  Y  E  L  H  T  T  R  S  P  T  F  L  G  L  E  G  R  E  S  R  S  F  F  P  Q  T  E  A  R  S  E  V  I  I  G  V  L  D  T  G  V  W  P  E  S  K  S  F  D  D  T  G  L  G  P  V  P  A  S  W  K  G  K  C  Q  T  G  K  N  F  D  A  S  S  C  N  R  K  L  I  G  A  R  F  F  S  Q  G  Y  E  A  A  F  G  A  I  D  E  T  I  E  S  K  S  P  R  D  D  E  G  H  G  T  H  T  A  T  T  A  A  G  S  V  V  T  G  A  S  L  L  G  Y  A  T  G  T  A  R  G  M  A  S  H  A  R  V  A  A  Y  K  V  C  W  T  G  G  C  F  S  S  D  I  L  A  G  M  D  Q  A  V  I  D  G  V  N  V  L  S  L  S  L  G  G  T  I  S  D  Y  H  R  D  I  V  A  I  G  A  F  S  A  A  S  Q  G  I  F  V  S  C  S  A  G  N  G  G  P  S  S  G  T  L  S  N  V  A  P  W  I  T  T  V  G  A  G  T  M  D  R  E  F  P  A  Y  I  G  I  G  N  G  K  K  L  N  G  V  S  L  Y  S  G  K  A  L  P  S  S  V  M  P  L  V  Y  A  G  N  V  S  Q  S  S  N  G  N  L  C  T  S  G  S  L  I  P  E  K  V  A  G  K  I  V  V  C  D  R  G  M  N  A  R  A  Q  K  G  L  V  V  K  D  A  G  G  I  G  M  I  L  A  N  T  D  T  Y  G  D  E  L  V  A  D  A  H  L  I  P  T  A  A  V  G  Q  T  A  G  N  L  I  K  Q  Y  I  A  S  N  S  N  P  T  A  T  I  A  F  G  G  T  K  L  G  V  Q  P  S  P  V  V  A  A  F  S  S  R  G  P  N  P  I  T  P  D  V  L  K  P  D  L  I  A  P  G  V  N  I  L  A  G  W  T  G  K  V  G  P  T  G  L  Q  E  D  T  R  N  V  G  F  N  I  I  S  G  T  S  M  S  C  P  H  V  S  G  L  A  A  L  L  K  A  T  H  P  E  W  S  P  A  A  I  R  S  A  L  M  T  T  S  Y  S  T  Y  K  N  G  K  T  I  E  D  V  A  T  G  M  S  S  T  P  F  D  Y  G  A  G  H  V  N  P  T  A  A  V  S  P  G  L  V  Y  D  L  T  V  D  D  Y  I  N  F  L  C  A  L  D  Y  S  P  S  M  I  K  V  I  A  K  R  D  I  S  C  D  E  N  K  E  Y  R  V  A  D  L  N  Y  P  S  F  S  I  P  M  E  T  A  W  G  E  H  A  D  S  S  T  P  T  V  T  R  Y  T  R  T  L  T  N  V  G  N  P  A  T  Y  K  A  S  V  S  S  E  T  Q  D  V  K  I  L  V  E  P  Q  T  L  T  F  S  R  K  N  E  K  K  T  Y  T  V  T  F  T  A  T  S  K  P  S  G  T  T  S  F  A  R  L  E  W  S  D  G  Q  H  V  V  A  S  P  I  A  F  S  W  T  *  F  C  *  F  *  V  I  H  H  K  C  T  S  A  N  S  P  F  *  I  I  T  S  V  Q  Q  L  L  L  *  Y  F  T  N  *  T  S  I  L  T  Y  N  *  E  A  *  A  I  L  G  N  V  G  *  F  A  Q  Q  K  A  G  A  V  F  A  R  Y  N  Y  V  L  N  H  T  I  Q  V  D  I  I  W  L  Y  F  L  S   </second_frame>
            <third_frame>   S  I  T  Y  H  S  Q  L  E  P  I  T  Q  N  S  S  P  S  P  P  Q  E  E  K  K  K  S  F  S  F  Q  *  R  F  N  F  H  L  R  H  *  E  L  T  *  R  W  K  D  S  G  S  C  F  F  *  Y  *  W  *  C  C  F  M  C  L  L  M  Q  D  R  T  R  R  R  L  I  *  F  T  W  T  S  S  T  C  L  L  I  L  M  I  I  L  S  G  M  T  H  H  *  S  Q  Y  P  R  A  P  T  C  F  T  P  T  T  V  S  S  M  A  T  Q  H  S  *  Q  L  M  K  P  K  H  L  H  S  N  R  E  F  S  W  S  T  R  K  *  Y  T  S  F  T  P  L  D  P  L  R  F  W  D  L  K  D  V  K  V  D  H  S  F  L  R  L  K  Q  G  V  R  S  L  L  V  C  W  T  Q  V  F  G  L  N  Q  K  V  L  M  T  L  D  *  V  Q  S  L  R  A  G  R  V  S  V  K  L  A  R  T  S  T  H  Q  A  V  I  G  N  L  L  V  R  G  F  S  H  K  V  M  K  Q  L  L  G  Q  S  M  R  P  L  N  P  S  H  Q  G  T  M  K  A  M  A  H  T  L  Q  L  Q  Q  L  A  R  L  *  P  E  L  A  S  W  V  M  Q  L  V  Q  H  V  G  W  L  H  T  Q  G  W  Q  R  T  R  Y  V  G  P  E  D  V  L  A  A  T  Y  W  Q  G  W  T  R  L  S  *  M  V  *  M  C  S  H  C  P  L  V  A  Q  F  L  I  I  I  G  T  *  L  Q  S  E  H  F  L  Q  H  L  K  G  S  L  S  H  A  Q  R  G  M  V  V  Q  A  L  G  R  Y  P  T  L  H  H  G  *  L  L  *  V  L  E  P  W  T  V  N  F  Q  H  T  L  A  L  E  M  G  K  N  S  M  E  Y  H  F  T  V  E  R  H  C  L  V  L  *  C  H  W  C  M  L  E  M  S  A  N  H  L  M  E  I  Y  A  P  V  V  V  *  F  Q  K  K  L  L  E  K  L  S  S  V  T  G  G  *  M  Q  G  H  K  R  V  W  L  *  R  M  L  V  E  *  G  *  F  W  Q  T  Q  T  L  T  E  M  S  W  L  L  M  H  T  S  Y  L  Q  L  Q  L  V  K  L  R  A  T  *  S  S  S  T  *  L  L  T  A  I  Q  L  P  Q  L  H  L  E  E  P  S  W  V  F  N  H  R  Q  L  L  Q  L  L  V  P  E  G  Q  T  Q  S  H  Q  M  Y  S  N  L  I  *  *  H  Q  V  S  I  F  L  L  A  G  Q  G  K  L  D  Q  L  A  C  K  K  T  P  G  M  *  A  S  T  S  S  L  E  L  P  C  H  V  P  M  *  V  G  *  Q  H  Y  S  K  L  P  I  Q  N  G  V  Q  Q  L  *  G  Q  H  *  *  L  Q  V  I  A  H  T  K  T  E  K  Q  S  R  M  L  Q  Q  E  C  H  L  H  H  L  I  M  V  L  D  M  *  I  Q  Q  Q  L  S  V  L  V  *  C  M  I  *  Q  L  M  T  I  *  T  F  Y  V  P  W  T  T  A  R  V  *  S  R  S  L  Q  K  E  T  S  P  V  T  K  I  R  S  I  E  L  L  I  L  I  T  H  L  F  P  F  L  W  K  R  P  G  V  N  M  Q  I  V  V  P  P  P  *  P  D  T  Q  G  L  *  Q  M  W  E  T  Q  L  H  T  R  P  Q  S  L  L  K  H  R  T  *  R  F  W  L  S  H  K  H  L  L  S  A  E  R  T  K  R  K  P  T  L  *  H  S  L  L  L  P  S  H  Q  A  Q  P  A  S  L  D  W  S  G  Q  M  D  N  T  L  L  Q  A  Q  L  L  S  A  G  H  D  S  A  S  S  K  S  F  T  T  N  V  Q  V  L  I  V  L  F  K  *  L  L  V  C  S  S  Y  S  S  N  I  S  P  T  E  Q  V  S  *  P  I  I  K  K  P  R  Q  F  *  A  M  L  V  D  L  P  S  K  R  L  V  L  Y  L  P  D  I  I  M  Y  *  T  T  Q  Y  R  W  I  L  F  G  F  I  S  C  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82947" stop="85280"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2331</number_coding_nucleotides>
                  <number_encoded_amino_acids>777</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSPSTLRTHIKMERLRLMFLLILMVVLFHVFVDARQNQKKTYIIHMDKFNMPADFDDHTQWYDSSLKSVSKSANMLYTYNSVIHGYSTQLTADEAKALAQQPGILLVHEEVIYELHTTRSPTFLGLEGRESRSFFPQTEARSEVIIGVLDTGVWPESKSFDDTGLGPVPASWKGKCQTGKNFDASSCNRKLIGARFFSQGYEAAFGAIDETIESKSPRDDEGHGTHTATTAAGSVVTGASLLGYATGTARGMASHARVAAYKVCWTGGCFSSDILAGMDQAVIDGVNVLSLSLGGTISDYHRDIVAIGAFSAASQGIFVSCSAGNGGPSSGTLSNVAPWITTVGAGTMDREFPAYIGIGNGKKLNGVSLYSGKALPSSVMPLVYAGNVSQSSNGNLCTSGSLIPEKVAGKIVVCDRGMNARAQKGLVVKDAGGIGMILANTDTYGDELVADAHLIPTAAVGQTAGNLIKQYIASNSNPTATIAFGGTKLGVQPSPVVAAFSSRGPNPITPDVLKPDLIAPGVNILAGWTGKVGPTGLQEDTRNVGFNIISGTSMSCPHVSGLAALLKATHPEWSPAAIRSALMTTSYSTYKNGKTIEDVATGMSSTPFDYGAGHVNPTAAVSPGLVYDLTVDDYINFLCALDYSPSMIKVIAKRDISCDENKEYRVADLNYPSFSIPMETAWGEHADSSTPTVTRYTRTLTNVGNPATYKASVSSETQDVKILVEPQTLTFSRKNEKKTYTVTFTATSKPSGTTSFARLEWSDGQHVVASPIAFSWT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="89477" PGL_stop="86373"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89477" e_stop="89350"/>
            <exon e_start="88226" e_stop="87831"/>
            <exon e_start="86961" e_stop="86522"/>
            <exon e_start="86401" e_stop="86373"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.986"/>
          <exon-only e_score="0.655"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89477" e_stop="89350" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="89349" i_stop="88227" i_length="1123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88226" e_stop="87831" e_length="396"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="87830" i_stop="86962" i_length="869"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="86961" e_stop="86522" e_length="440"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86521" i_stop="86402" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="0.655">
            <gDNA_exon_boundary e_start="86401" e_stop="86373" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89477" stop="89350"/>
              <exon start="88226" stop="87831"/>
              <exon start="86961" stop="86522"/>
              <exon start="86401" stop="86373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326468" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGGTCGTAAAGGCTCTCCTTGATGCTAGTGCCCCATGGAATGCCCTGACCCCTTCCAATGTCTCCGCCGGCGACTTCGCCATGGATGCTGGTCATCAAGAGGCTTTTGACGTTCTTCTCAATACCG : CAATCCAGGCAGAATTGATCCTTGGAACAATTGCAAGGAAGGACAATGCTAAGGGGAACTCAGATGGGAACTATTTAGATGATAGAGTCACTTTTAGTGAAGATAAAATTATGGACTCTGATAGTAAGGCTATTATGATGGCTTGGGAGAAGCCATTGATGGAAGCTCATGCGAAAGCTGTCTGCTCAAATGGTGGTCACATACTGAACATTGGATTTGGGATGGGCCTTGTAGATACAGCCATACAACAATATTCACCTTTATCACACACTATTATTGAAGCTCATCCAGAGGTCTATGATCGTATGATGCGCGCAGGTTGGGGTGAGAAGGAGAATGTGAAAATCATATTTGGTCGGTGGCAAGATGTCATTTCTAAACTTGAAACCTATGATG : GAATATTTTTTGATACTTATGGGGAGTATTATGAAGATATGCGGGAATTTCATCAACATCTTCCTAGATTATTGAAGCCAGGTGGTATATATTCATTTTTTAATGGTCTATGTGGAGGTAATCCCTTCTTTCATATCGTATACTGTCAGCTAGTCTCTCTAGAACTTGAGAGCTTGGGATATTCTACGCAGCTGATACCATTACCAGTGAAGGATTGTTTAGGTGAATCTGTGTGGGAGGGTGTTAAACAGAAGTACTGGCAGTTAGATACGTATTACCTTCCTGTTTGTCAGTCTATGAGCGAATCAGAATGATATTATTGGACCACTGATAATGTGGCATCAGATGAAAAAGCCTCCTAGGATCTTCTTCTTTTCTTGTTGTGTATTCATTTTGTAACGAGTTTGGTAGTATTTTCACATCTTCGATTTTTAGATATT : TGCCAAGAAAAAAACCCAAAGAAAAGAGA</gDNA_template>
            <first_frame> R  G  R  K  G  S  P  *  C  *  C  P  M  E  C  P  D  P  F  Q  C  L  R  R  R  L  R  H  G  C  W  S  S  R  G  F  *  R  S  S  Q  Y  R :   N  P  G  R  I  D  P  W  N  N  C  K  E  G  Q  C  *  G  E  L  R  W  E  L  F  R  *  *  S  H  F  *  *  R  *  N  Y  G  L  *  *  *  G  Y  Y  D  G  L  G  E  A  I  D  G  S  S  C  E  S  C  L  L  K  W  W  S  H  T  E  H  W  I  W  D  G  P  C  R  Y  S  H  T  T  I  F  T  F  I  T  H  Y  Y  *  S  S  S  R  G  L  *  S  Y  D  A  R  R  L  G  *  E  G  E  C  E  N  H  I  W  S  V  A  R  C  H  F  *  T  *  N  L  *  W :   N  I  F  *  Y  L  W  G  V  L  *  R  Y  A  G  I  S  S  T  S  S  *  I  I  E  A  R  W  Y  I  F  I  F  *  W  S  M  W  R  *  S  L  L  S  Y  R  I  L  S  A  S  L  S  R  T  *  E  L  G  I  F  Y  A  A  D  T  I  T  S  E  G  L  F  R  *  I  C  V  G  G  C  *  T  E  V  L  A  V  R  Y  V  L  P  S  C  L  S  V  Y  E  R  I  R  M  I  L  L  D  H  *  *  C  G  I  R  *  K  S  L  L  G  S  S  S  F  L  V  V  Y  S  F  C  N  E  F  G  S  I  F  T  S  S  I  F  R  Y   : L  P  R  K  K  P  K  E  K  R </first_frame>
            <second_frame>  E  V  V  K  A  L  L  D  A  S  A  P  W  N  A  L  T  P  S  N  V  S  A  G  D  F  A  M  D  A  G  H  Q  E  A  F  D  V  L  L  N  T   : A  I  Q  A  E  L  I  L  G  T  I  A  R  K  D  N  A  K  G  N  S  D  G  N  Y  L  D  D  R  V  T  F  S  E  D  K  I  M  D  S  D  S  K  A  I  M  M  A  W  E  K  P  L  M  E  A  H  A  K  A  V  C  S  N  G  G  H  I  L  N  I  G  F  G  M  G  L  V  D  T  A  I  Q  Q  Y  S  P  L  S  H  T  I  I  E  A  H  P  E  V  Y  D  R  M  M  R  A  G  W  G  E  K  E  N  V  K  I  I  F  G  R  W  Q  D  V  I  S  K  L  E  T  Y  D   : G  I  F  F  D  T  Y  G  E  Y  Y  E  D  M  R  E  F  H  Q  H  L  P  R  L  L  K  P  G  G  I  Y  S  F  F  N  G  L  C  G  G  N  P  F  F  H  I  V  Y  C  Q  L  V  S  L  E  L  E  S  L  G  Y  S  T  Q  L  I  P  L  P  V  K  D  C  L  G  E  S  V  W  E  G  V  K  Q  K  Y  W  Q  L  D  T  Y  Y  L  P  V  C  Q  S  M  S  E  S  E  *  Y  Y  W  T  T  D  N  V  A  S  D  E  K  A  S  *  D  L  L  L  F  L  L  C  I  H  F  V  T  S  L  V  V  F  S  H  L  R  F  L  D  I  :  C  Q  E  K  N  P  K  K  R   </second_frame>
            <third_frame>   R  S  *  R  L  S  L  M  L  V  P  H  G  M  P  *  P  L  P  M  S  P  P  A  T  S  P  W  M  L  V  I  K  R  L  L  T  F  F  S  I  P  :  Q  S  R  Q  N  *  S  L  E  Q  L  Q  G  R  T  M  L  R  G  T  Q  M  G  T  I  *  M  I  E  S  L  L  V  K  I  K  L  W  T  L  I  V  R  L  L  *  W  L  G  R  S  H  *  W  K  L  M  R  K  L  S  A  Q  M  V  V  T  Y  *  T  L  D  L  G  W  A  L  *  I  Q  P  Y  N  N  I  H  L  Y  H  T  L  L  L  K  L  I  Q  R  S  M  I  V  *  C  A  Q  V  G  V  R  R  R  M  *  K  S  Y  L  V  G  G  K  M  S  F  L  N  L  K  P  M  M  :  E  Y  F  L  I  L  M  G  S  I  M  K  I  C  G  N  F  I  N  I  F  L  D  Y  *  S  Q  V  V  Y  I  H  F  L  M  V  Y  V  E  V  I  P  S  F  I  S  Y  T  V  S  *  S  L  *  N  L  R  A  W  D  I  L  R  S  *  Y  H  Y  Q  *  R  I  V  *  V  N  L  C  G  R  V  L  N  R  S  T  G  S  *  I  R  I  T  F  L  F  V  S  L  *  A  N  Q  N  D  I  I  G  P  L  I  M  W  H  Q  M  K  K  P  P  R  I  F  F  F  S  C  C  V  F  I  L  *  R  V  W  *  Y  F  H  I  F  D  F  *  I  F :   A  K  K  K  T  Q  R  K  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89476" stop="89350"/>
                    <exon start="88226" stop="87831"/>
                    <exon start="86961" stop="86648"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVVKALLDASAPWNALTPSNVSAGDFAMDAGHQEAFDVLLNTAIQAELILGTIARKDNAKGNSDGNYLDDRVTFSEDKIMDSDSKAIMMAWEKPLMEAHAKAVCSNGGHILNIGFGMGLVDTAIQQYSPLSHTIIEAHPEVYDRMMRAGWGEKENVKIIFGRWQDVISKLETYDGIFFDTYGEYYEDMREFHQHLPRLLKPGGIYSFFNGLCGGNPFFHIVYCQLVSLELESLGYSTQLIPLPVKDCLGESVWEGVKQKYWQLDTYYLPVCQSMSESE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="95466" PGL_stop="101793"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95466" e_stop="96053"/>
            <exon e_start="96567" e_stop="96750"/>
            <exon e_start="99720" e_stop="99792"/>
            <exon e_start="101386" e_stop="101793"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="0.993"/>
          <exon-intron don_prob="0.988" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="95466" e_stop="96053" e_length="588"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="96054" i_stop="96566" i_length="513"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96567" e_stop="96750" e_length="184"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.964">
            <gDNA_intron_boundary i_start="96751" i_stop="99719" i_length="2969"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99720" e_stop="99792" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.914" acc_prob="0.983">
            <gDNA_intron_boundary i_start="99793" i_stop="101385" i_length="1593"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="101386" e_stop="101793" e_length="408"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95466" stop="95915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95882" stop="96053"/>
              <exon start="96567" stop="96750"/>
              <exon start="99720" stop="99792"/>
              <exon start="101386" stop="101793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACAATAGTAAATCTGCTGACGATGCAAGAGATAGACACCATGAATTTTTTATTGCAATCGACAATCAAATTAGGAAAGTTGAGAAATCTCTTAATGAATCAGCTGTTTCACAAGGCAAACCACCACTTCCATGGGTGCGGTTGGATGAGGGAGAAGTCGATGAACTTGCTGCATTTCTCTCTGGCCCATCCACCTCTTCTGCAGGCATAACCCATGCAAAAGTACATGGAGTGGAGCTGCAAGTTCCCAAGTGGGAAGAGAATGTAAATCAATCACTTCTTGAGTGTTCCCAGAATCCTCCTCATTCGGAGGAAGGTGTTCTAGGTGAGGCCATAGACGAGAAGTTTTTAGGCCATCGGAGAACAGCAAGTGCTAGTGCTGACATTGGTGCATGGCAGATTGCACTTGGCAATGATATTTCCATCAAAGAACCTGCATCCCCTCCTCGCAGAATACCAAGTTACCAGGGATTGTTGAATGCCGTGGAATCTGTTAAGGAGTTAAAATGGCCCAAGAATGGTTACCGGAAGTTGAAGTTCAATCAAGAAGCTGACAATACATTGCCGCGTTCTCAGCCACCAACAAGG : AACACAAACACATGCTATGATAGGAATAAGAGTTGCCTTGATGGTTGTGATGATTGTTATGATAAGCAACTGTATGGTTGGTATGGTGCCGTTCAGCGCCAGCTGCAAAGATCTCAGTATTACATGCAATATCGTCGACCTGTTCGAATAGTTTTCTCAGTGTTTCTTCTCATTTTCCTGATTG : CATCTCTCCAGCAAGAATGATTGGAGACTTCAACAAATGATTCAGGTTCATGTGAAGATTGAGCTGAGATGAG : TTCTAGTGGCAGTCCGGACAATCTGAGAGATGAACCTTTATTCTTGTAATTGATGAACTTGCAATGTCGAGACGGTCAGAGGAAAAAGGGCCTCAGTTTTGGTATTACCTTATAGAGGAAAGATGTAAATTACATGTAATTTTGTTCAGGTGATGCAAAGCTGGTGCTATTATCTCAACATACTTTGTAGTAATACCTTATCACCATTAGTGGAGACCAAATTATGTTGTATTATGATATTCCGTCCATCAGAAACAACTTCTCTACCTCTAAGGTAAAGGTAAGGTGTGCGTCTCCTCCAAACCCCATTCTGTAGGATTACACTGGCTATGTTGTTGTATACAGAAATGAAAGAGATGATTAGGTCTATTTGACTTGCTAAATCATGTATATTATTGTATTACTGTA</gDNA_template>
            <first_frame> Y  N  S  K  S  A  D  D  A  R  D  R  H  H  E  F  F  I  A  I  D  N  Q  I  R  K  V  E  K  S  L  N  E  S  A  V  S  Q  G  K  P  P  L  P  W  V  R  L  D  E  G  E  V  D  E  L  A  A  F  L  S  G  P  S  T  S  S  A  G  I  T  H  A  K  V  H  G  V  E  L  Q  V  P  K  W  E  E  N  V  N  Q  S  L  L  E  C  S  Q  N  P  P  H  S  E  E  G  V  L  G  E  A  I  D  E  K  F  L  G  H  R  R  T  A  S  A  S  A  D  I  G  A  W  Q  I  A  L  G  N  D  I  S  I  K  E  P  A  S  P  P  R  R  I  P  S  Y  Q  G  L  L  N  A  V  E  S  V  K  E  L  K  W  P  K  N  G  Y  R  K  L  K  F  N  Q  E  A  D  N  T  L  P  R  S  Q  P  P  T  R  :  N  T  N  T  C  Y  D  R  N  K  S  C  L  D  G  C  D  D  C  Y  D  K  Q  L  Y  G  W  Y  G  A  V  Q  R  Q  L  Q  R  S  Q  Y  Y  M  Q  Y  R  R  P  V  R  I  V  F  S  V  F  L  L  I  F  L  I   : A  S  L  Q  Q  E  *  L  E  T  S  T  N  D  S  G  S  C  E  D  *  A  E  M  S :   S  S  G  S  P  D  N  L  R  D  E  P  L  F  L  *  L  M  N  L  Q  C  R  D  G  Q  R  K  K  G  L  S  F  G  I  T  L  *  R  K  D  V  N  Y  M  *  F  C  S  G  D  A  K  L  V  L  L  S  Q  H  T  L  *  *  Y  L  I  T  I  S  G  D  Q  I  M  L  Y  Y  D  I  P  S  I  R  N  N  F  S  T  S  K  V  K  V  R  C  A  S  P  P  N  P  I  L  *  D  Y  T  G  Y  V  V  V  Y  R  N  E  R  D  D  *  V  Y  L  T  C  *  I  M  Y  I  I  V  L  L   </first_frame>
            <second_frame>  T  I  V  N  L  L  T  M  Q  E  I  D  T  M  N  F  L  L  Q  S  T  I  K  L  G  K  L  R  N  L  L  M  N  Q  L  F  H  K  A  N  H  H  F  H  G  C  G  W  M  R  E  K  S  M  N  L  L  H  F  S  L  A  H  P  P  L  L  Q  A  *  P  M  Q  K  Y  M  E  W  S  C  K  F  P  S  G  K  R  M  *  I  N  H  F  L  S  V  P  R  I  L  L  I  R  R  K  V  F  *  V  R  P  *  T  R  S  F  *  A  I  G  E  Q  Q  V  L  V  L  T  L  V  H  G  R  L  H  L  A  M  I  F  P  S  K  N  L  H  P  L  L  A  E  Y  Q  V  T  R  D  C  *  M  P  W  N  L  L  R  S  *  N  G  P  R  M  V  T  G  S  *  S  S  I  K  K  L  T  I  H  C  R  V  L  S  H  Q  Q  G :   T  Q  T  H  A  M  I  G  I  R  V  A  L  M  V  V  M  I  V  M  I  S  N  C  M  V  G  M  V  P  F  S  A  S  C  K  D  L  S  I  T  C  N  I  V  D  L  F  E  *  F  S  Q  C  F  F  S  F  S  *  L  :  H  L  S  S  K  N  D  W  R  L  Q  Q  M  I  Q  V  H  V  K  I  E  L  R  *   : V  L  V  A  V  R  T  I  *  E  M  N  L  Y  S  C  N  *  *  T  C  N  V  E  T  V  R  G  K  R  A  S  V  L  V  L  P  Y  R  G  K  M  *  I  T  C  N  F  V  Q  V  M  Q  S  W  C  Y  Y  L  N  I  L  C  S  N  T  L  S  P  L  V  E  T  K  L  C  C  I  M  I  F  R  P  S  E  T  T  S  L  P  L  R  *  R  *  G  V  R  L  L  Q  T  P  F  C  R  I  T  L  A  M  L  L  Y  T  E  M  K  E  M  I  R  S  I  *  L  A  K  S  C  I  L  L  Y  Y  C  </second_frame>
            <third_frame>   Q  *  *  I  C  *  R  C  K  R  *  T  P  *  I  F  Y  C  N  R  Q  S  N  *  E  S  *  E  I  S  *  *  I  S  C  F  T  R  Q  T  T  T  S  M  G  A  V  G  *  G  R  S  R  *  T  C  C  I  S  L  W  P  I  H  L  F  C  R  H  N  P  C  K  S  T  W  S  G  A  A  S  S  Q  V  G  R  E  C  K  S  I  T  S  *  V  F  P  E  S  S  S  F  G  G  R  C  S  R  *  G  H  R  R  E  V  F  R  P  S  E  N  S  K  C  *  C  *  H  W  C  M  A  D  C  T  W  Q  *  Y  F  H  Q  R  T  C  I  P  S  S  Q  N  T  K  L  P  G  I  V  E  C  R  G  I  C  *  G  V  K  M  A  Q  E  W  L  P  E  V  E  V  Q  S  R  S  *  Q  Y  I  A  A  F  S  A  T  N  K   : E  H  K  H  M  L  *  *  E  *  E  L  P  *  W  L  *  *  L  L  *  *  A  T  V  W  L  V  W  C  R  S  A  P  A  A  K  I  S  V  L  H  A  I  S  S  T  C  S  N  S  F  L  S  V  S  S  H  F  P  D  C :   I  S  P  A  R  M  I  G  D  F  N  K  *  F  R  F  M  *  R  L  S  *  D  E  :  F  *  W  Q  S  G  Q  S  E  R  *  T  F  I  L  V  I  D  E  L  A  M  S  R  R  S  E  E  K  G  P  Q  F  W  Y  Y  L  I  E  E  R  C  K  L  H  V  I  L  F  R  *  C  K  A  G  A  I  I  S  T  Y  F  V  V  I  P  Y  H  H  *  W  R  P  N  Y  V  V  L  *  Y  S  V  H  Q  K  Q  L  L  Y  L  *  G  K  G  K  V  C  V  S  S  K  P  H  S  V  G  L  H  W  L  C  C  C  I  Q  K  *  K  R  *  L  G  L  F  D  L  L  N  H  V  Y  Y  C  I  T  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95466" stop="96053"/>
                    <exon start="96567" stop="96750"/>
                    <exon start="99720" stop="99739"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNSKSADDARDRHHEFFIAIDNQIRKVEKSLNESAVSQGKPPLPWVRLDEGEVDELAAFLSGPSTSSAGITHAKVHGVELQVPKWEENVNQSLLECSQNPPHSEEGVLGEAIDEKFLGHRRTASASADIGAWQIALGNDISIKEPASPPRRIPSYQGLLNAVESVKELKWPKNGYRKLKFNQEADNTLPRSQPPTRNTNTCYDRNKSCLDGCDDCYDKQLYGWYGAVQRQLQRSQYYMQYRRPVRIVFSVFLLIFLIASLQQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="105987" PGL_stop="103102"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105987" e_stop="105952"/>
            <exon e_start="105840" e_stop="105796"/>
            <exon e_start="103578" e_stop="103546"/>
            <exon e_start="103459" e_stop="103102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.868" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105987" e_stop="105952" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.868" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105951" i_stop="105841" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105840" e_stop="105796" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.973">
            <gDNA_intron_boundary i_start="105795" i_stop="103579" i_length="2217"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103578" e_stop="103546" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.787" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103545" i_stop="103460" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="103459" e_stop="103102" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105987" stop="105952"/>
              <exon start="105840" stop="105796"/>
              <exon start="103578" stop="103546"/>
              <exon start="103459" stop="103102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340233" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATGACAAACTTCACTGGAACTGGTATCGGTGTTG : GTGCTGGCATTGGTTGCGGATTCGGTGTAGGATGGGGTTTCGGAG : GCATGCCTTTGAATTTCTTGGGTCTTGGTGTAG : GTGGTGGCTGTGGGATCGGAGTAGGCCTCGGATGGGGATTTGGCTCTGCCTTTGGTAGCCAGTACAGGAACTCTAGAGTTACATTTGACGGCACAGATTTTATCAATAAGGAGCGTAGTGAAGAAAGAGATTTAAAAGATCCAGCCAAAGGCACTGGAAAAGCTCTTTCTTCTCAGTAAATATACACATCTTCTGTTGATGCACTCATATTCTCACTTTCCAAAATTTGTTAAAGTTGTACAACCAGTTCCATTTCAGCTATCACTTGGAAACATATGTAGTATCATTTGACACTTGACAGTACTCTCTTCTTTGATGTCTAAAATTTGTTTACTTATGATGCTTGGGAAAACTCGGT</gDNA_template>
            <first_frame> *  *  Q  T  S  L  E  L  V  S  V  L  :  V  L  A  L  V  A  D  S  V  *  D  G  V  S  E  :  A  C  L  *  I  S  W  V  L  V  *  :  V  V  A  V  G  S  E  *  A  S  D  G  D  L  A  L  P  L  V  A  S  T  G  T  L  E  L  H  L  T  A  Q  I  L  S  I  R  S  V  V  K  K  E  I  *  K  I  Q  P  K  A  L  E  K  L  F  L  L  S  K  Y  T  H  L  L  L  M  H  S  Y  S  H  F  P  K  F  V  K  V  V  Q  P  V  P  F  Q  L  S  L  G  N  I  C  S  I  I  *  H  L  T  V  L  S  S  L  M  S  K  I  C  L  L  M  M  L  G  K  T  R  </first_frame>
            <second_frame>  D  D  K  L  H  W  N  W  Y  R  C  W :   C  W  H  W  L  R  I  R  C  R  M  G  F  R  R :   H  A  F  E  F  L  G  S  W  C  R :   W  W  L  W  D  R  S  R  P  R  M  G  I  W  L  C  L  W  *  P  V  Q  E  L  *  S  Y  I  *  R  H  R  F  Y  Q  *  G  A  *  *  R  K  R  F  K  R  S  S  Q  R  H  W  K  S  S  F  F  S  V  N  I  H  I  F  C  *  C  T  H  I  L  T  F  Q  N  L  L  K  L  Y  N  Q  F  H  F  S  Y  H  L  E  T  Y  V  V  S  F  D  T  *  Q  Y  S  L  L  *  C  L  K  F  V  Y  L  *  C  L  G  K  L  G </second_frame>
            <third_frame>   M  T  N  F  T  G  T  G  I  G  V   : G  A  G  I  G  C  G  F  G  V  G  W  G  F  G   : G  M  P  L  N  F  L  G  L  G  V   : G  G  G  C  G  I  G  V  G  L  G  W  G  F  G  S  A  F  G  S  Q  Y  R  N  S  R  V  T  F  D  G  T  D  F  I  N  K  E  R  S  E  E  R  D  L  K  D  P  A  K  G  T  G  K  A  L  S  S  Q  *  I  Y  T  S  S  V  D  A  L  I  F  S  L  S  K  I  C  *  S  C  T  T  S  S  I  S  A  I  T  W  K  H  M  *  Y  H  L  T  L  D  S  T  L  F  F  D  V  *  N  L  F  T  Y  D  A  W  E  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105985" stop="105952"/>
                    <exon start="105840" stop="105796"/>
                    <exon start="103578" stop="103546"/>
                    <exon start="103459" stop="103281"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTNFTGTGIGVGAGIGCGFGVGWGFGGMPLNFLGLGVGGGCGIGVGLGWGFGSAFGSQYRNSRVTFDGTDFINKERSEERDLKDPAKGTGKALSSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="106226" PGL_stop="109453"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106226" e_stop="106282"/>
            <exon e_start="106483" e_stop="106577"/>
            <exon e_start="107654" e_stop="107928"/>
            <exon e_start="108834" e_stop="109453"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106226" e_stop="106282" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="106283" i_stop="106482" i_length="200"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106483" e_stop="106577" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.849">
            <gDNA_intron_boundary i_start="106578" i_stop="107653" i_length="1076"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107654" e_stop="107928" e_length="275"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107929" i_stop="108833" i_length="905"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="108834" e_stop="109453" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106226" stop="106282"/>
              <exon start="106483" stop="106577"/>
              <exon start="107654" stop="107928"/>
              <exon start="108834" stop="109453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGATCAGCAGGCAACGATCGAGCCATGGCTTTCCTCTTCCACAAATTTCAAGAG : GGAGTGAAAATTCTTGCTAAAAGCCCCACTTTTGCTAGAGAATCGAGGCTTCTTCAGTTCGAAGCTGACATAAATCTACTATTCCTTTACACCAG : TTACAACCGTTTAGGAAGGAATGCCGAAGAAGCTGATGCAGAGGAGATTATTGATATGGCTAACAAAGCCTCATTAGACGATCAACAGAAGCAAGTTCATGAGAATGTGCATTCTCAGGTTACAAACTTTTGCAGCTATATGGATGACATATTACTCCTGGATCAAAAGGTCAAAGACAATCAGGCCACATCACCAGCAACACTACATTTTTCTCCTCGTAGTAGTGGCCTTGGTCTTGCTGTTGATGGGAATTCTCTAGCACAAGACCGCATTG : CCGTACCTGAAACCAAGACACTGCACCGCACAGAAGTTTCACAGAGGTTAAAAGATCTTATGGGCTACACTCTCGAGGTCAAACCATCTCAAATTCCTCATGAGGATGCTGGAAAGGGTTTATTCTTACAAGGTGAAGCCAATATTGGTTCTGTCATAGCATTCTATCCTGGAGTAGTCTACCCTCCAGCATATTACCGCTATATTCCTGGGTACCCTAGAGTTGATGCCCAAAATCCACATCTGATCACACGGTATGATGGGACTATGATCAATGCTCAGCCCTGGGGTGCTGGTGGTGAATGTCGTGAATTATGGGATTGGACCAGTTCTCCTGAACCTAAGTGCACTATGCAAGCTGGTGAAAAAGGTTCTGACCTAGATGGAACAGACGTTGGAGGCAACCTTGAAGTGTTTGAGAGGAGAAACCCTCTAGCCTTTGCTCATTTCGCCAACCACCCAGCCAAAGGCATGGTCCCCAATGTAATGGTATACCCTTATGATTTCCCCCTGCTTGAGGAGGACATGAGACCCTATATACCTAATGTTTCATTTGGAAACGATGAAGAAACAGAGACTAGTAAATTTGGCAGCTTTAGGTTCATCAAAATGTGGAAGTCC</gDNA_template>
            <first_frame> R  R  S  A  G  N  D  R  A  M  A  F  L  F  H  K  F  Q  E  :  G  V  K  I  L  A  K  S  P  T  F  A  R  E  S  R  L  L  Q  F  E  A  D  I  N  L  L  F  L  Y  T  S :   Y  N  R  L  G  R  N  A  E  E  A  D  A  E  E  I  I  D  M  A  N  K  A  S  L  D  D  Q  Q  K  Q  V  H  E  N  V  H  S  Q  V  T  N  F  C  S  Y  M  D  D  I  L  L  L  D  Q  K  V  K  D  N  Q  A  T  S  P  A  T  L  H  F  S  P  R  S  S  G  L  G  L  A  V  D  G  N  S  L  A  Q  D  R  I   : A  V  P  E  T  K  T  L  H  R  T  E  V  S  Q  R  L  K  D  L  M  G  Y  T  L  E  V  K  P  S  Q  I  P  H  E  D  A  G  K  G  L  F  L  Q  G  E  A  N  I  G  S  V  I  A  F  Y  P  G  V  V  Y  P  P  A  Y  Y  R  Y  I  P  G  Y  P  R  V  D  A  Q  N  P  H  L  I  T  R  Y  D  G  T  M  I  N  A  Q  P  W  G  A  G  G  E  C  R  E  L  W  D  W  T  S  S  P  E  P  K  C  T  M  Q  A  G  E  K  G  S  D  L  D  G  T  D  V  G  G  N  L  E  V  F  E  R  R  N  P  L  A  F  A  H  F  A  N  H  P  A  K  G  M  V  P  N  V  M  V  Y  P  Y  D  F  P  L  L  E  E  D  M  R  P  Y  I  P  N  V  S  F  G  N  D  E  E  T  E  T  S  K  F  G  S  F  R  F  I  K  M  W  K  S </first_frame>
            <second_frame>  E  D  Q  Q  A  T  I  E  P  W  L  S  S  S  T  N  F  K  R :   E  *  K  F  L  L  K  A  P  L  L  L  E  N  R  G  F  F  S  S  K  L  T  *  I  Y  Y  S  F  T  P   : V  T  T  V  *  E  G  M  P  K  K  L  M  Q  R  R  L  L  I  W  L  T  K  P  H  *  T  I  N  R  S  K  F  M  R  M  C  I  L  R  L  Q  T  F  A  A  I  W  M  T  Y  Y  S  W  I  K  R  S  K  T  I  R  P  H  H  Q  Q  H  Y  I  F  L  L  V  V  V  A  L  V  L  L  L  M  G  I  L  *  H  K  T  A  L  :  P  Y  L  K  P  R  H  C  T  A  Q  K  F  H  R  G  *  K  I  L  W  A  T  L  S  R  S  N  H  L  K  F  L  M  R  M  L  E  R  V  Y  S  Y  K  V  K  P  I  L  V  L  S  *  H  S  I  L  E  *  S  T  L  Q  H  I  T  A  I  F  L  G  T  L  E  L  M  P  K  I  H  I  *  S  H  G  M  M  G  L  *  S  M  L  S  P  G  V  L  V  V  N  V  V  N  Y  G  I  G  P  V  L  L  N  L  S  A  L  C  K  L  V  K  K  V  L  T  *  M  E  Q  T  L  E  A  T  L  K  C  L  R  G  E  T  L  *  P  L  L  I  S  P  T  T  Q  P  K  A  W  S  P  M  *  W  Y  T  L  M  I  S  P  C  L  R  R  T  *  D  P  I  Y  L  M  F  H  L  E  T  M  K  K  Q  R  L  V  N  L  A  A  L  G  S  S  K  C  G  S   </second_frame>
            <third_frame>   K  I  S  R  Q  R  S  S  H  G  F  P  L  P  Q  I  S  R   : G  S  E  N  S  C  *  K  P  H  F  C  *  R  I  E  A  S  S  V  R  S  *  H  K  S  T  I  P  L  H  Q  :  L  Q  P  F  R  K  E  C  R  R  S  *  C  R  G  D  Y  *  Y  G  *  Q  S  L  I  R  R  S  T  E  A  S  S  *  E  C  A  F  S  G  Y  K  L  L  Q  L  Y  G  *  H  I  T  P  G  S  K  G  Q  R  Q  S  G  H  I  T  S  N  T  T  F  F  S  S  *  *  W  P  W  S  C  C  *  W  E  F  S  S  T  R  P  H  C :   R  T  *  N  Q  D  T  A  P  H  R  S  F  T  E  V  K  R  S  Y  G  L  H  S  R  G  Q  T  I  S  N  S  S  *  G  C  W  K  G  F  I  L  T  R  *  S  Q  Y  W  F  C  H  S  I  L  S  W  S  S  L  P  S  S  I  L  P  L  Y  S  W  V  P  *  S  *  C  P  K  S  T  S  D  H  T  V  *  W  D  Y  D  Q  C  S  A  L  G  C  W  W  *  M  S  *  I  M  G  L  D  Q  F  S  *  T  *  V  H  Y  A  S  W  *  K  R  F  *  P  R  W  N  R  R  W  R  Q  P  *  S  V  *  E  E  K  P  S  S  L  C  S  F  R  Q  P  P  S  Q  R  H  G  P  Q  C  N  G  I  P  L  *  F  P  P  A  *  G  G  H  E  T  L  Y  T  *  C  F  I  W  K  R  *  R  N  R  D  *  *  I  W  Q  L  *  V  H  Q  N  V  E  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008K13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106226" stop="106282"/>
                    <exon start="106483" stop="106577"/>
                    <exon start="107654" stop="107928"/>
                    <exon start="108834" stop="109453"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1047</number_coding_nucleotides>
                  <number_encoded_amino_acids>349</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRSAGNDRAMAFLFHKFQEGVKILAKSPTFARESRLLQFEADINLLFLYTSYNRLGRNAEEADAEEIIDMANKASLDDQQKQVHENVHSQVTNFCSYMDDILLLDQKVKDNQATSPATLHFSPRSSGLGLAVDGNSLAQDRIAVPETKTLHRTEVSQRLKDLMGYTLEVKPSQIPHEDAGKGLFLQGEANIGSVIAFYPGVVYPPAYYRYIPGYPRVDAQNPHLITRYDGTMINAQPWGAGGECRELWDWTSSPEPKCTMQAGEKGSDLDGTDVGGNLEVFERRNPLAFAHFANHPAKGMVPNVMVYPYDFPLLEEDMRPYIPNVSFGNDEETETSKFGSFRFIKMWKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 27 chains have been computed
$ 
$ memory statistics:
$ 75256 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 5017 bytes was the average size of a spliced alignment
$ 18360 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1669 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 33 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-05 08:36:23
-->
