<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-20 20:28:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344035" ref_strand="+" ref_description="SGN-U344035        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: R1 | ribonucleoside-diphosphate reductase small chain, putative / ribonucleotide reductase, putative, similar to ribonucleotide reductase GI:4151068 from (Nicotiana tabacum) | chr2:9300435-9304922 FORWARD | Aliases: R1, F7D8.11, F7D8_11(evalue: 2e-35, score=144) genbank/nr: gi|4151068|emb|CAA71816.1| ribonucleotide reductase [Nicotiana tabacum](evalue: 3e-41, score=169)">
      <seq>acatgatgatggttctgtgcagaaaatccctgaaattccagatgatcttaaagttatttataagactgtctgggagatcaagcaacggaccctggttgacatggctgtagaccgtggttgctacatagatcagagtcaaagcctcaacatccatatggatcaacccaactttggaaagctcacttcccttcattttcatgcttggtccaggggtttgaaaactggaatgtactatctacgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="906" stop="2066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1206" g_stop="1268" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1269" i_stop="1351" i_length="83">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1352" g_stop="1499" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="211" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1500" i_stop="1733" i_length="234">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1734" g_stop="1766" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="244" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-U344035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1206" e_stop="1268"/>
          <exon e_start="1352" e_stop="1499"/>
          <exon e_start="1734" e_stop="1766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGATGATGGTTCTGTGCAGAAAATCCCTGAAATTCCAGATGATCTTAAAGTTATTTATAAGTATGAACTTTCACTAATTACTTGTTCAGTTTTTATATACACTTCATTTCCACTTACATTCTAATACTGTTCACTGACTTCAGGACTGTCTGGGAGATCAAGCAACGGACCCTGGTTGACATGGCTGTAGACCGTGGTTGCTACATAGATCAGAGTCAAAGCCTCAACATCCATATGGATCAACCCAACTTTGGAAAGCTCACTTCCCTTCATTTTCATGCTTGGTCCAGGGTACACTTCAATTTTCACATTATAAGTTTTGTTGATCTTTTGAAGAGTGCATAAGCACTAAGAAATGGTCTGGTATATTGTTACTCAATAGTTTAGTACAAACATCCATTTAAAGAGATCTTTTAGCGACTAGTGAATGTAGTTGTCAGACTACAACAGCATGAACAGATCTTTGTAGGTTCCATCTTCACAGGTCAATTTTGAGTCTGAGTTTCATCTTTCTTGTTATTGTAGGGTTTGAAAACTGGAATGTACTATCTACGATCA</genome_strand>
        <mrna_strand>ACATGATGATGGTTCTGTGCAGAAAATCCCTGAAATTCCAGATGATCTTAAAGTTATTTATAA...................................................................................GACTGTCTGGGAGATCAAGCAACGGACCCTGGTTGACATGGCTGTAGACCGTGGTTGCTACATAGATCAGAGTCAAAGCCTCAACATCCATATGGATCAACCCAACTTTGGAAAGCTCACTTCCCTTCATTTTCATGCTTGGTCCAGG..........................................................................................................................................................................................................................................GGTTTGAAAACTGGAATGTACTATCTACGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320277" ref_strand="+" ref_description="SGN-U320277        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: AT5G64750.1 | Symbol: None | encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. | chr5:25908732-25911404 FORWARD | Aliases: MVP7.8, MVP7_8 (evalue: 6e-24, score=108) genbank/nr: gi|71834729|gb|AAZ41819.1| 80C09_8 [Brassica rapa subsp. pekinensis] (evalue: 2e-22, score=110)">
      <seq>ttcattgttcttgtcaacttttgcaaaaataaacatttcatatatacaaatatacatgtgtaatattgttcactacaaggtggcgaattcgaatgataacaggagtagtagacaagacgatgaagggattaatgtgtttaatacgatgtttcaagggaatattaatagagaagaagaaatgtctgttatggtttctgcattaactcgtgttgttgttggtaatcatcctagtgaaaatatcgaaaatcatcatcaaaataatacattgatttctaggggtgttggagaaaaaagaggacgtgatgaagtattattacatggaactaattcttctcatatgatattatcatcaggtggtgaaggttcaagcattaggacaacaagagaagcaacattcatatacactaattcaacaaacaatagcattattgatgaatctgttaataatcaagtaagacgacgatacagaggagttagacagaggccatgggggaaatgggcagctgaaataagagatccatataaagcagcgcgtgtttggttaggtacttttgatactgctgaaggggctgctagagcttatgatgaagctgctcttacatttagaggtagtaaagcaaaactaaatttcccagaaaatgttacattattagtgccttcttcaattcaacaacccatttactcctcacccgacccagccatttctccgtatcgttccaattttattattggacatacctctacggaagtggagcctatacttcacaccaatccttcaaattttattgagcctatagctcacacttcatctctgtatcgttccaattttattgaacggaatcatcacatggtgcagcaggagccgtattttcaggcaggtagtactagtggtggaagtgattttcatcaaactacaaattcttctaattcgtcaatttatgatcacccttcttcttcatctggataatttttgttgtactactagaatatctttttcatcttcctagaagattttgactagctaatagtgatttttcttttaaaggaatgtattggtggccccacataaatgaggtccttttattttcttgcataacagtctttaatttgacttttgttggtattaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="17663" stop="19764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17963" g_stop="18315" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18316" i_stop="18692" i_length="377">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18693" g_stop="19465" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="1126" r_length="773" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1127" polyA_stop="1149"/>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-U320277" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1126</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17963" e_stop="18315"/>
          <exon e_start="18693" e_stop="19465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGTTCTTGTCAACTTTTGCAAAAATAAACATTTCATATATACAAATATACATGTGTAATATTGTTCACTACAAGGTGGCGAATTCGAATGATAACAGGAGTAGTAGACAAGACGATGAAGGGATTAATGTGTTTAATACGATGTTTCAAGGGAATATTAATAGAGAAGAAGAAATGTCTGTTATGGTTTCTGCATTAACTCGTGTTGTTGTTGGTAATCATCCTAGTGAAAATATCGAAAATCATCATCAAAATAATACATTGATTTCTAGGGGTGTTGGAGAAAAAAGAGGACGTGATGAAGTATTATTACATGGAACTAATTCTTCTCATATGATATTATCATCAGGTAATTTTATTTTTCTTTCCCTTGATAAGTAATGATCGATGTAAATATAAGATAGTTACGAACTCAAGAGTAAATTTAAACTCCTTATTTTGTGGTTTATTCATTTAGCTATAGCTTAACTTTGACTAATTCAGATTTCGGAAAATCTCAAGTAATCAATCTTTTTATTTATGATGTATATTTACATTTTTAGCACATGTCTACATCTTTTAAATTGTTGCATTTGTCCTTTTGTTTTTATATGGAATGTTTTTGCATATGACAAACAGTCTTTCTATCTCTGATCAGGGATCTAGAATTTTCATTAAGAGATGATGAGTCCATGCATTATATTGAGTATGTTGTTATGGGTATTGATACTAAATTATGTTATATAGGTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAGACGACGATACAGAGGAGTTAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATAAGAGATCCATATAAAGCAGCGCGTGTTTGGTTAGGTACTTTTGATACTGCTGAAGGGGCTGCTAGAGCTTATGATGAAGCTGCTCTTACATTTAGAGGTAGTAAAGCAAAACTAAATTTCCCAGAAAATGTTACATTATTAGTGCCTTCTTCAATTCAACAACCCATTTACTCCTCACCCGACCCAGCCATTTCTCCGTATCGTTCCAATTTTATTATTGGACATACCTCTACGGAAGTGGAGCCTATACTTCACACCAATCCTTCAAATTTTATTGAGCCTATAGCTCACACTTCATCTCTGTATCGTTCCAATTTTATTGAACGGAATCATCACATGGTGCAGCAGGAGCCGTATTTTCAGGCAGGTAGTACTAGTGGTGGAAGTGATTTTCATCAAACTACAAATTCTTCTAATTCGTCAATTTATGATCACCCTTCTTCTTCATCTGGATAATTTTTGTTGTACTACTAGAATATCTTTTTCATCTTCCTAGAAGATTTTGACTAGCTAATAGTGATTTTTCTTTTAAAGGAATGTATTGGTGGCCCCACATAAATGAGGTCCTTTTATTTTCTTGCATAACAGTCTTTAATTTGACTTTTGTTGGTATTC</genome_strand>
        <mrna_strand>TTCATTGTTCTTGTCAACTTTTGCAAAAATAAACATTTCATATATACAAATATACATGTGTAATATTGTTCACTACAAGGTGGCGAATTCGAATGATAACAGGAGTAGTAGACAAGACGATGAAGGGATTAATGTGTTTAATACGATGTTTCAAGGGAATATTAATAGAGAAGAAGAAATGTCTGTTATGGTTTCTGCATTAACTCGTGTTGTTGTTGGTAATCATCCTAGTGAAAATATCGAAAATCATCATCAAAATAATACATTGATTTCTAGGGGTGTTGGAGAAAAAAGAGGACGTGATGAAGTATTATTACATGGAACTAATTCTTCTCATATGATATTATCATCAG.........................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAGACGACGATACAGAGGAGTTAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATAAGAGATCCATATAAAGCAGCGCGTGTTTGGTTAGGTACTTTTGATACTGCTGAAGGGGCTGCTAGAGCTTATGATGAAGCTGCTCTTACATTTAGAGGTAGTAAAGCAAAACTAAATTTCCCAGAAAATGTTACATTATTAGTGCCTTCTTCAATTCAACAACCCATTTACTCCTCACCCGACCCAGCCATTTCTCCGTATCGTTCCAATTTTATTATTGGACATACCTCTACGGAAGTGGAGCCTATACTTCACACCAATCCTTCAAATTTTATTGAGCCTATAGCTCACACTTCATCTCTGTATCGTTCCAATTTTATTGAACGGAATCATCACATGGTGCAGCAGGAGCCGTATTTTCAGGCAGGTAGTACTAGTGGTGGAAGTGATTTTCATCAAACTACAAATTCTTCTAATTCGTCAATTTATGATCACCCTTCTTCTTCATCTGGATAATTTTTGTTGTACTACTAGAATATCTTTTTCATCTTCCTAGAAGATTTTGACTAGCTAATAGTGATTTTTCTTTTAAAGGAATGTATTGGTGGCCCCACATAAATGAGGTCCTTTTATTTTCTTGCATAACAGTCTTTAATTTGACTTTTGTTGGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316351" ref_strand="+" ref_description="SGN-U316351        Tomato 200607 #1 [27 ESTs aligned] arabidopsis/peptide: | Symbol: None | 26S proteasome regulatory subunit, putative (RPN5), p55 protein-like | chr5:3089279-3092537 REVERSE | Aliases: None(evalue: 0, score=691) genbank/nr: gi|50920117|ref|XP_470419.1| putative proteasome regulatory non-ATPase subunit [Oryza sativa (japonica cultivar-group)] >gi|27573351|gb|AAO20069.1| putative proteasome regulatory non-ATPase subunit [Oryza sativa (japonica cultivar-group)] (evalue: 0, score=711)">
      <seq>tctcttttagggtttctgagaatcgatctcaatcgaactccgaaaaaaactcaataatcaatatggaaggtgatgggaaattggaggcgcaaattgaggtgcttctgaatgtagagaagcagatgaggcaagctggcgatgtcgctgctactagaaaagcagctatagacattcttcagctttgcttcgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggtccaacaggccatgcaatacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaaaaactcataggcgaggctgctgatttgatgcaagaagttgctgttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagattatgttcgtgctcaaattctctcgagaaagatcaatcccagagtgtttgaagctgatccatctaaagaaaagaagaaagcaaaggagggtgaaaatgtggttgaggaacctgctgcagatattccgtcactgccagagttgaagcagatctactatcaattaatgattaggtattactcacatagcaatgattaccttgaaatatgtcgctgttacaaggctatatatgagatcccttccgtgaaagaagacccagcacagtggataccagttctgaggaaaatttgctggtacttggtattgtctccccatgattctatgcaatcaagtcttcataactcaactttggaggacaaaaatctttcagaaattcctcatttcaggctgcttctgaagcaattgattaccatggaagtcattcagtggactgctttatggaacacattcaaggatgagtttgaaaatgagaagaatatgcctggtggcactttgggggacaaggctgctgaagacctcaaactgagagttattgagcacaacatccttgtcgtctcaaaatactactcaagaataaccttgaagaggctggctgttttactgtgcctcgatattcaggaagcggagaagcacctatctgaaatggttgtatcaaaagctttggttgctaaaatagacagacctatgggtattgtctgtttccaacccccaaaagacagcaatgatatcttgaattcttgggcgtctaatttggagaagctgcttgaccttgtcgaaaagagttgccaccagatccacaaagaaacaatggtgcacaaagctgctttaaaggcttagaagactttgatcggacaactctactggtaggagccaagccgagcctcacatcaattatagcaattccggtctggacgttcattgtgacaaagttgaaatcctttttgcagtactctctattctgagaaacaagcaacaagagcaaaaactcgcaaatcttgattcctctgcctgtactatcacgatttgcctgcttgcttttctcgttgtcggagtttcattttcttcccccattttgtatctttatctgacgtttctccgcatgatttattcattgtgatcagcaaaaatttaggtttgatgccaagagatcagagatgtcaagttccattaattgcttatttactcatcatcacattcattagcgctgtagttttattttgtaatgcatccttctttaggggttagcaaaaggaaaatggctttcttttccccttttaaaatgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38216" stop="28795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37916" g_stop="37852" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="260" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="368" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="473" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="530" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34548" g_stop="34352" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="727" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34351" i_stop="33270" i_length="1082">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33269" g_stop="33170" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="827" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31703" g_stop="31591" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="828" r_stop="940" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="31590" i_stop="30678" i_length="913">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30677" g_stop="30524" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="941" r_stop="1094" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="30523" i_stop="30415" i_length="109">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="30414" g_stop="30337" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1095" r_stop="1172" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="30336" i_stop="29760" i_length="577">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="29759" g_stop="29096" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1173" r_stop="1836" r_length="664" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-U316351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1836</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37916" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34352"/>
          <exon e_start="33269" e_stop="33170"/>
          <exon e_start="31703" e_stop="31591"/>
          <exon e_start="30677" e_stop="30524"/>
          <exon e_start="30414" e_stop="30337"/>
          <exon e_start="29759" e_stop="29096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAGGTACATCTGATTATGTTATAAATGTGGCTAAGCAAGTTACCTTCTCTAGAATTGTTGAATGCAACACCCTTCTTACTATCAAGCATTCAGCAGATTCATGCAATCCGAGTATAATTTTAAAATAACGTAATTTATTTTCTTAAGATAACTTGGAATAGTTAATGTGTTCATACTTAAAGCTTGCAACTTCTGCACTTAGTTTTGGTGATTTGTGCAGTATCGGGACTGAAGATATTAGTATTTAAGGCACATAATTTGCTTATTTGCTCATTTTCTGGCAGTTTGTCTACATCTTACTTACATTTGAGTTTGGGTTAGACATGTTTTCTGAATAAAGATTCTGATTGTCTTCATTTTATATATGTTTTAGTTGTCTTTGAGGATTCTAGTTTCCTCCCCTTATCAACTGTGCCAAAGGATTAAAGTGAATGTTATCTGTGCTTTGTCAGAAATGTTTGTTTTTAGTAGAAACTTCATATTTTTTCCGGAAGAGATTATACACCTTGGATGTCATTGAATAAATAGAGACTGAAGTAAGTTCTGCAGAGCTCCATGTTTGAGATAGTTCCATATTTGCTCTGTTTGCTTTGGTTTATTTGTGGATGGACTTCCATTCTTTAAATTTCATTGGGAGCAGGTGACTAAACTTTAGAAGACAATTGTAGTTCTGCTATACTTTGCACTTCTTTTCAAGATGATAAGAAGTGATTGAAGTTGTATTCAGAATACATGACAATTAAATGACATGGTTATGCTCATCTACACCCTATAAATTCACCTAAGCTGATACTGACTTTTGAAGTAGTAAAGGTCTTTCAAAGTTGCATCACCTATCAAATGTAAATGAAAGTTATTTTATTTATCATAGAATAGTTTTTGCCATGTCTCCAAATTTTTTAGGTTGGAGTGACCTTGCATGATTTTCTTAATTGTTGATTTAGCAGGTCAGCAATCCTAAGGCATGAGATTCTTACTTATTTAGAGTGATATAGCTCTAGATGAATGAATGATTTCATTTGGAGATCGTTTTTTGCATTTGTGTATCTTAAACTGGTGTGTCATTCTTTCTACTTCTGTTGCAGGTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCAGTAAGATCCCTTTCATGAATTACTCACATTCTGCATAAATTATAATTTCGAGACGTTGCACGTGGTATTATTCGATGGAAAATCAGTTTTGAATTTTTTAAGTAGTAAGTCTATATAATGTAGTGTTGGTTAATGAGCAATTCTTTTCAGAAAAATATAACAATAATCATTCTGCTGCACAATATCATTTGCCTGGATGCCTTAAATGATATTTCACTTCAAAAAAAATAAAAATTCAAAATATGTGACAACTAAATTGATTTACCAATAAAAGGTATGAACTCTGACAAAAGTAAATGGGTTGGGAATTATTAATCTGTTGTAACAGATACGTCACTGCTGCATAGCTTTAAGATTAGGTGACAATTAAATTAATTTACACCTACCTGAAAATTCTAATTGCTAAATCAAGTAGAGGTGATACAAAACCATCAGATATGTCAAATTCATAAAGAGACACTCTTTCTTCCCTATATTGGGAAACAAATTATTTAAGAATAGAAGATATAGGATTAGTTTTTCCCTGGTATCATATGATAATTGTGAGCTGGGCTTGTATTCTTATGCAGCTAGTCAGGCTTCTCTTCATCTAACAAGATAAGGGTCGGCATTCTTTTCAGTTTTCTAGAAAAGGGGGTAGGCATCCTTTTCATCTGTCAGAAAGATTTGGGTTGGGTTGGGGGGGGGGGGGCTTTATTATTTAGCCTGTTTGGATTACCTTTTGGCTTGTGACATGAAGGCATAAGTTAGAAATTTTTACTTATGGCTTTTAGCTTATTTTTGATATTTTGGTTTAAAAACATGTGCTTATAAGCACTTTTTTATTTTACCTAGACACTTCAAAGCTGCTTAAAAACTATTTTGGCTTTAAAGAACCTATAATAAGCCACAATCCAAACAGGCTCTTAGTCTACCCATGTTGATCATTGAACATCTTGGGCAGAAGGAAAACAAATTTCGAACTGTGGCAATAGGCTTGGCTATAATTAGATTAAGAAGAAAACAAGAATGTGTAAATGCGGAAGTGTGGTAATACGAAGAGAGAAACATAAAAGCTAATGGGGAGGAAGAGTCATTACTCTGGCTATAACTCTTTCCACAAACCATTTACTGTTCTCCAGAAGATTTAATAAATGTAACATTATTTTATAGGTTTTAGAGTCCAAGTCTATATTATTAGGAGAAAAATGGGTGGGATGGATGGACGTATTCTATTTTGATAACTTGAAGTCACTGATAAATAAGATACAATGTATTCTGTTTTGTTAACTTGAGTTGTTATTGGAGGCCCTTTCTTAGTGGATCTAGCATAATTTTTTTTATTTTTAATTACATTTCGATTTGTAGACGTGTATAAATGTAGATAGAGGAGCTCGTCATTGTATTTGAGATTCCAAATCTTGAAGAGGGTTAATTGCAGATAATGCTTGATTGACCAGTTTGCTTAACTCTGTTATTTCATGTAGGTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAGGTTTTGTGCAAAAAACTCTATTGCACTATGTTTACTGTTGCTACTTGTAAAATAAAGGAAAAAAGTAATAACTATGTTTATGGTGTTATTATCTTTGCATTTGTATATTTGGGTTTGTGGGGTAAGATTTCTCAAAATTTTGCCAATTGACATAAACTCTGCTTGGAAATTATTTCATTCTGTGTGTGGTTATATGTCATTTGATGATGAATATTTTGTACTTCCTTTGGAACAAGTTGAAGTTTATATAGCAATTTCTATTTTGGGACATCAAGGATGTTTGCCACCTGTCCATCAACAATATTGTTCTGCATCTTTCAGAAATTTCAAGAATCTTAAGTTTTTTACTATCTTCACAAATTCATCCAATGTATCCGTGACAGACTAGCTTTGAGAAACTGTCTTAGTAATTTCTTTGATTACTAATGACCAATATAGTAGAAATGTCAACTGAGCCATCTTACACTTCCTCCCTAGTCAAATCCTATCACACAATTAATTGGCTGGAGTATTAGAGTTCTAGTCTGGTTCATCGGGCTTTGCATTGTTGCAATGTTTGCGTATTTGATATGAGTCTTGCATGTTAAGGCTGAAGGAGATTAGAGTTATTCAATGATTAATGGATCTTTGAAGTCCTTATTTTCTTAAACTAACATTTTGAAAATTGAAACTCTAAACAGAAATATCAAGTAATGAGTGTATATATAACCTTATTCTACTACCTGACTAACTTATATAGTCTCGTTTATTTCAATATAAATGTGGAATTTTGCATGCTCAGAAGGAAACATTTCTTATCTTTTATCCAACGACTGTTTTTTCAGAAATTTACAATTTTCTCCACCCTCTACACTAGAGGGGAACCAACTTCAGAATAATGATTGTTTTGGTATCTTCCTTTTTTTTGCTTCAGGCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCACGTAATATCTAAGGGCTCACTTTTAGTTCTCCTGTTTGATGATTTGTCATAATGGCGTCCATTTTCCTCTTGAATTGTGCTTTAACTTTTAAGTACTATTTTCCTTGCAGAACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAGGTGCATGTTTAGTTTATTACTTTTCCTAATTTGTTTAGAGTATTGTGTACAATACCTACATGTTTTACTTCATCTTTGGTGGTATTTAGAGAGTTCCTGCTATGATTAAGTGAATGTGGTCTAAACCTTAGTGCAAAGGCCGAGGGCCACTGTAAGTCTTGGGGTCTCTCTGTGCCTTGCAGCAATATAACTTTGTGCTTGTGAAAAACATTAGCTGTTAGATTTGTCAATTCAGATCTGGTTCATTATAGTTAAGATCCTTGGTCTGGCTCTTGCTGATGGCGGGAAATTTGCTATACCTTTGCACTAAAATAGTAAAGAAGGTAAACTGTGTGAAAAAGAAAAAAATGTTGTAGACAACTCAGTGGAGAGTTGCTGGATGTTCCCAATTTTTACCTTCTGTGCACAAACTTTCAAATGTTGGAACTGAAATCATAATCAGCATTCTATTTTCTCTTCATCATTACTGAGCACCATTTGTCTAGATGTTGCAACTGTCACATAATTGTTTTACCTCTCATAGCATACATTTGTCTGGTGATTTCTGATCTTCTTTTCTTTTTTCTTTTTTTTTCAGGAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTAATTGCTTATTTACTCATCATCACATTCATTAGCGCTGTAGTTTTATTTTGTAATGCATCCTTCTTTAGGGGTTAGCAAAAGGAAAATGGCTTTCTTTTCCCCTTTTAAAATG</genome_strand>
        <mrna_strand>TCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCAC.............................................................................................................AACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTAATTGCTTATTTACTCATCATCACATTCATTAGCGCTGTAGTTTTATTTTGTAATGCATCCTTCTTTAGGGGTTAGCAAAAGGAAAATGGCTTTCTTTTCCCCTTTTAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335617" ref_strand="+" ref_description="SGN-U335617        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 26S proteasome regulatory subunit, putative (RPN5), p55 protein-like | chr5:3089279-3092537 REVERSE | Aliases: None(evalue: 6e-59, score=224) genbank/nr: IMP(evalue: 8e-62, score=239)">
      <seq>tctctctcttttagggtttctgagaatcgatctcaatcgaactccgaaaaaaactcaataatcaatatggaaggtgatgggaaattggaggcgcaaattgaggtgcttctgaatgtagagaagcagatgaggcaagctggcgatgtcgctgctactagaaaagcagctatagacattcttcagctttgcttcgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggtccaacaggccatgcaatacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaaaaactcataggcgaggctgctgatttgatgcaagaagttgctgttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcaaagaaacaatggtgcacaaagctgctttaaaggcttagaagactttgatcggacaactctactggtaggagccaagccgagcctcacatcaattatagcaattccggtctggacgttcattgtgacaaagttgaaatcctttttgcagtactctctattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38220" stop="29117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37920" g_stop="37852" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="264" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="372" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="477" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="534" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34548" g_stop="34537" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="546" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34536" i_stop="29580" i_length="4957">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29579" g_stop="29417" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="709" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-U335617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37920" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34537"/>
          <exon e_start="29579" e_stop="29417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAGGTACATCTGATTATGTTATAAATGTGGCTAAGCAAGTTACCTTCTCTAGAATTGTTGAATGCAACACCCTTCTTACTATCAAGCATTCAGCAGATTCATGCAATCCGAGTATAATTTTAAAATAACGTAATTTATTTTCTTAAGATAACTTGGAATAGTTAATGTGTTCATACTTAAAGCTTGCAACTTCTGCACTTAGTTTTGGTGATTTGTGCAGTATCGGGACTGAAGATATTAGTATTTAAGGCACATAATTTGCTTATTTGCTCATTTTCTGGCAGTTTGTCTACATCTTACTTACATTTGAGTTTGGGTTAGACATGTTTTCTGAATAAAGATTCTGATTGTCTTCATTTTATATATGTTTTAGTTGTCTTTGAGGATTCTAGTTTCCTCCCCTTATCAACTGTGCCAAAGGATTAAAGTGAATGTTATCTGTGCTTTGTCAGAAATGTTTGTTTTTAGTAGAAACTTCATATTTTTTCCGGAAGAGATTATACACCTTGGATGTCATTGAATAAATAGAGACTGAAGTAAGTTCTGCAGAGCTCCATGTTTGAGATAGTTCCATATTTGCTCTGTTTGCTTTGGTTTATTTGTGGATGGACTTCCATTCTTTAAATTTCATTGGGAGCAGGTGACTAAACTTTAGAAGACAATTGTAGTTCTGCTATACTTTGCACTTCTTTTCAAGATGATAAGAAGTGATTGAAGTTGTATTCAGAATACATGACAATTAAATGACATGGTTATGCTCATCTACACCCTATAAATTCACCTAAGCTGATACTGACTTTTGAAGTAGTAAAGGTCTTTCAAAGTTGCATCACCTATCAAATGTAAATGAAAGTTATTTTATTTATCATAGAATAGTTTTTGCCATGTCTCCAAATTTTTTAGGTTGGAGTGACCTTGCATGATTTTCTTAATTGTTGATTTAGCAGGTCAGCAATCCTAAGGCATGAGATTCTTACTTATTTAGAGTGATATAGCTCTAGATGAATGAATGATTTCATTTGGAGATCGTTTTTTGCATTTGTGTATCTTAAACTGGTGTGTCATTCTTTCTACTTCTGTTGCAGGTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCAGTAAGATCCCTTTCATGAATTACTCACATTCTGCATAAATTATAATTTCGAGACGTTGCACGTGGTATTATTCGATGGAAAATCAGTTTTGAATTTTTTAAGTAGTAAGTCTATATAATGTAGTGTTGGTTAATGAGCAATTCTTTTCAGAAAAATATAACAATAATCATTCTGCTGCACAATATCATTTGCCTGGATGCCTTAAATGATATTTCACTTCAAAAAAAATAAAAATTCAAAATATGTGACAACTAAATTGATTTACCAATAAAAGGTATGAACTCTGACAAAAGTAAATGGGTTGGGAATTATTAATCTGTTGTAACAGATACGTCACTGCTGCATAGCTTTAAGATTAGGTGACAATTAAATTAATTTACACCTACCTGAAAATTCTAATTGCTAAATCAAGTAGAGGTGATACAAAACCATCAGATATGTCAAATTCATAAAGAGACACTCTTTCTTCCCTATATTGGGAAACAAATTATTTAAGAATAGAAGATATAGGATTAGTTTTTCCCTGGTATCATATGATAATTGTGAGCTGGGCTTGTATTCTTATGCAGCTAGTCAGGCTTCTCTTCATCTAACAAGATAAGGGTCGGCATTCTTTTCAGTTTTCTAGAAAAGGGGGTAGGCATCCTTTTCATCTGTCAGAAAGATTTGGGTTGGGTTGGGGGGGGGGGGGCTTTATTATTTAGCCTGTTTGGATTACCTTTTGGCTTGTGACATGAAGGCATAAGTTAGAAATTTTTACTTATGGCTTTTAGCTTATTTTTGATATTTTGGTTTAAAAACATGTGCTTATAAGCACTTTTTTATTTTACCTAGACACTTCAAAGCTGCTTAAAAACTATTTTGGCTTTAAAGAACCTATAATAAGCCACAATCCAAACAGGCTCTTAGTCTACCCATGTTGATCATTGAACATCTTGGGCAGAAGGAAAACAAATTTCGAACTGTGGCAATAGGCTTGGCTATAATTAGATTAAGAAGAAAACAAGAATGTGTAAATGCGGAAGTGTGGTAATACGAAGAGAGAAACATAAAAGCTAATGGGGAGGAAGAGTCATTACTCTGGCTATAACTCTTTCCACAAACCATTTACTGTTCTCCAGAAGATTTAATAAATGTAACATTATTTTATAGGTTTTAGAGTCCAAGTCTATATTATTAGGAGAAAAATGGGTGGGATGGATGGACGTATTCTATTTTGATAACTTGAAGTCACTGATAAATAAGATACAATGTATTCTGTTTTGTTAACTTGAGTTGTTATTGGAGGCCCTTTCTTAGTGGATCTAGCATAATTTTTTTTATTTTTAATTACATTTCGATTTGTAGACGTGTATAAATGTAGATAGAGGAGCTCGTCATTGTATTTGAGATTCCAAATCTTGAAGAGGGTTAATTGCAGATAATGCTTGATTGACCAGTTTGCTTAACTCTGTTATTTCATGTAGGTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAGGTTTTGTGCAAAAAACTCTATTGCACTATGTTTACTGTTGCTACTTGTAAAATAAAGGAAAAAAGTAATAACTATGTTTATGGTGTTATTATCTTTGCATTTGTATATTTGGGTTTGTGGGGTAAGATTTCTCAAAATTTTGCCAATTGACATAAACTCTGCTTGGAAATTATTTCATTCTGTGTGTGGTTATATGTCATTTGATGATGAATATTTTGTACTTCCTTTGGAACAAGTTGAAGTTTATATAGCAATTTCTATTTTGGGACATCAAGGATGTTTGCCACCTGTCCATCAACAATATTGTTCTGCATCTTTCAGAAATTTCAAGAATCTTAAGTTTTTTACTATCTTCACAAATTCATCCAATGTATCCGTGACAGACTAGCTTTGAGAAACTGTCTTAGTAATTTCTTTGATTACTAATGACCAATATAGTAGAAATGTCAACTGAGCCATCTTACACTTCCTCCCTAGTCAAATCCTATCACACAATTAATTGGCTGGAGTATTAGAGTTCTAGTCTGGTTCATCGGGCTTTGCATTGTTGCAATGTTTGCGTATTTGATATGAGTCTTGCATGTTAAGGCTGAAGGAGATTAGAGTTATTCAATGATTAATGGATCTTTGAAGTCCTTATTTTCTTAAACTAACATTTTGAAAATTGAAACTCTAAACAGAAATATCAAGTAATGAGTGTATATATAACCTTATTCTACTACCTGACTAACTTATATAGTCTCGTTTATTTCAATATAAATGTGGAATTTTGCATGCTCAGAAGGAAACATTTCTTATCTTTTATCCAACGACTGTTTTTTCAGAAATTTACAATTTTCTCCACCCTCTACACTAGAGGGGAACCAACTTCAGAATAATGATTGTTTTGGTATCTTCCTTTTTTTTGCTTCAGGCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCACGTAATATCTAAGGGCTCACTTTTAGTTCTCCTGTTTGATGATTTGTCATAATGGCGTCCATTTTCCTCTTGAATTGTGCTTTAACTTTTAAGTACTATTTTCCTTGCAGAACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAGGTGCATGTTTAGTTTATTACTTTTCCTAATTTGTTTAGAGTATTGTGTACAATACCTACATGTTTTACTTCATCTTTGGTGGTATTTAGAGAGTTCCTGCTATGATTAAGTGAATGTGGTCTAAACCTTAGTGCAAAGGCCGAGGGCCACTGTAAGTCTTGGGGTCTCTCTGTGCCTTGCAGCAATATAACTTTGTGCTTGTGAAAAACATTAGCTGTTAGATTTGTCAATTCAGATCTGGTTCATTATAGTTAAGATCCTTGGTCTGGCTCTTGCTGATGGCGGGAAATTTGCTATACCTTTGCACTAAAATAGTAAAGAAGGTAAACTGTGTGAAAAAGAAAAAAATGTTGTAGACAACTCAGTGGAGAGTTGCTGGATGTTCCCAATTTTTACCTTCTGTGCACAAACTTTCAAATGTTGGAACTGAAATCATAATCAGCATTCTATTTTCTCTTCATCATTACTGAGCACCATTTGTCTAGATGTTGCAACTGTCACATAATTGTTTTACCTCTCATAGCATACATTTGTCTGGTGATTTCTGATCTTCTTTTCTTTTTTCTTTTTTTTTCAGGAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTG</genome_strand>
        <mrna_strand>TCTCTCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346572" ref_strand="+" ref_description="SGN-U346572        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 2e-31, score=89.7)">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="47964" stop="49219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48264" g_stop="48919" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-U346572" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48264" e_stop="48919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATCAACCAGGTTCTTACTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTTCGGGAGTACAACATGCAACTGCTGTGGCTCCCTGCATGGATGCCTCATTGGAAGTAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACGGGTAATCAGCATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTTAGGATGCCTATGATTTTCTAATTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATTCAGTGTTGAGTTTGTGACATATCAGTTTCAGTGGAATGCCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGACATCATTCTCTAGCTTATTTATGGAAAAGTATATACCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCTTAAGCCTAGAGCAAGGAAGGATGTCTGTTGCTGCTTATGAGGCCAAATTTCGTGCGCTATCCAGGTATGCCACTTAGCTTTGCTTCAGTCCACAAGAGCAGATTCGCCACTTTGTGAAAGGATTGAGGTCAGATTTGTAGGTCCCAGCCTTACAGGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="50129" stop="49199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49829" g_stop="49499" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49829" e_stop="49499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCGTAGGCTTGGCCAATGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAATTTGGAGAAAGCCAAGTCAAACCCAGAATCACATCAAAATCAACCATTTCTAGAATAATCAAATCTACATGAGTATTGCTCCCCACAAAAGTCACAAGACAAGACCTATAAACCTTCTCAACTATCACAGACTCCCCCACAGGAGTAGAGACACGAATAGGCATGTCAAGCAAATCACAATATACATCAAGACCAGTAGCAAAGGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330281" ref_strand="+" ref_description="SGN-U330281        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>caaagttcaattagattaatttgattttttttaaaaaaaaatatagatacatanaaattatttgaattgtgatttcttttgcatatcaaaacgataaaaaaaaagttgtttgtaaaatgtttgtcaacaattgatagtgaacgagtagagtagaatatttgaggtactgatgttctttattgaaataattgggtaaaataagtaaatataaatataaaattattaaaattgtagcttaaatagcacaaacaagaatgatagatctcttcatgtacgagtttcaataccactaatgcaaataaatagtggtatagtttataacaagttctttacaaaatgtctatttatatggtaacactaaaatttaaattataatttagtatacattatattaattacacgcaaaactcatttaacataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="70776" stop="69746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70476" g_stop="70043" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-U330281" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70476" e_stop="70043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTCAATTAGATTAATTTGATTTTTTTTTAAAA-AAATATAGATACATAAAAATTATTTGAATTGTGATTTCTTTTGCATATCAAAACGAT-AAAAAAAAGTTGTTTGTAAAATGTTTGTCAACAATTGATAGTGAACGAGTAGAGTAGAATATTTGAGGTACTGATGTTCTTTATTGAAATAATTGGGTAAAATAAGTAAATATAAATATAAAATTATTAAAATTGTAGCTTAAATAGCACAAACAAGAATGATAGATCTCTTCATGTACGAGTTTCAATACCACTAATGCAAATAAATAGTGGTATAGTTTATAACAAGTTCTTTACAAAATGTCTATTTATATGGTAACACTAAAATTTAAATTATAATTTAGTATACATTATATTAATTACACGCAAAACTCATTTAACATAAAAAAAAAAAAGAGTT</genome_strand>
        <mrna_strand>CAAAGTTCAATTAGATTAATTTGATTTTTTTTAAAAAAAAATATAGATACATANAAATTATTTGAATTGTGATTTCTTTTGCATATCAAAACGATAAAAAAAAAGTTGTTTGTAAAATGTTTGTCAACAATTGATAGTGAACGAGTAGAGTAGAATATTTGAGGTACTGATGTTCTTTATTGAAATAATTGGGTAAAATAAGTAAATATAAATATAAAATTATTAAAATTGTAGCTTAAATAGCACAAACAAGAATGATAGATCTCTTCATGTACGAGTTTCAATACCACTAATGCAAATAAATAGTGGTATAGTTTATAACAAGTTCTTTACAAAATGTCTATTTATATGGTAACACTAAAATTTAAATTATAATTTAGTATACATTATATTAATTACACGCAAAACTCATTTAACATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342831" ref_strand="+" ref_description="SGN-U342831        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|48057665|gb|AAT39964.1| putative gag polyprotein [Solanum demissum] (evalue: 1e-50, score=160)">
      <seq>ggaaaaatttcatgaatatgctatcagatggagggaacaagctgctaggtttaaaccaccgatgaaggagtcagagatgattgacgtttttctccaggcgcaagaacctgattactttctctatctgctttctgccgtagggaagacattcgctgaagttattaaggtaggggaaatggtggaaaatggtatcaagtctggaaagattgtaagtcaggctgccttaaaatccacaacacaagtgcttcaaaatggttctggaaatattgagggaagaagagaagggaggatgtggccactattgtatcagcgcctaggactcatgttctaggtaattccccacaacactattttccttcccaagctccacaatattctatgccatacactccatatcatggttttaatgcacaaccaattgcacccccttcttatccaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="87032" stop="85992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86732" g_stop="86292" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-U342831" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86732" e_stop="86292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATTTTCGTGAATATGCTATCAGATGGAGGGAACAAGCTGCTAGAGTTAAACCAACGACGAAGGAGTCAGAGATGATCAACATTTTTCTCCAAGCGCAAGAACCTGATTACTTTCACTATCTGCTTTCTGCCATATGGAAGTCATTCGCTGAAG--A-TAAGGTAGGGGAAATAGTGGGAAATGGCATCAAGTCTGGAAAGATTGTAAGTCAAGATGCCTTAAAAGTCACAACACAAGTGCTTCAAAATGGTTCTGGAAATATTGGAGGGAAGAAGAGAAGGGAGGATGTGGCCACTATTGTATCAGCGCCTAGGACTCATGTTCAAGGTAATTCCCCACAAGACTATTTTCCTTCCCAAGCTCCACAATATTCTGTTCCATACAGTCCATATCATGTTTTTAATGCACAACCAATTGCACCCCGTTCTTATCCACAATG</genome_strand>
        <mrna_strand>GGAAAAATTTCATGAATATGCTATCAGATGGAGGGAACAAGCTGCTAGGTTTAAACCACCGATGAAGGAGTCAGAGATGATTGACGTTTTTCTCCAGGCGCAAGAACCTGATTACTTTCTCTATCTGCTTTCTGCCGTAGGGAAGACATTCGCTGAAGTTATTAAGGTAGGGGAAATGGTGGAAAATGGTATCAAGTCTGGAAAGATTGTAAGTCAGGCTGCCTTAAAATCCACAACACAAGTGCTTCAAAATGGTTCTGGAAATATT-GAGGGAAGAAGAGAAGGGAGGATGTGGCCACTATTGTATCAGCGCCTAGGACTCATGTTCTAGGTAATTCCCCACAACACTATTTTCCTTCCCAAGCTCCACAATATTCTATGCCATACACTCCATATCATGGTTTTAATGCACAACCAATTGCACCCCCTTCTTATCCACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346766" ref_strand="+" ref_description="SGN-U346766        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|48057665|gb|AAT39964.1| putative gag polyprotein [Solanum demissum] (evalue: 1e-36, score=156)">
      <seq>tatgataagtaatccactctttgtgtcaactgccccgactaacaacatcctgtagacaatgatggtgcccaaatccaacagcgatcctctgcccaaagttcggcttgatcacagttacactcttgaagaggccattaaaattccaagctctcatcccaacattcatcaatatggttaccctgtcaaaattgagaagatggtcaagaatgaggaacatgaagaaatgactaagaaaatgaagagttctgaacagagtataagagatatgaaaggaccaagaggccacaaaggcatctcgttcagtgacttgtgtatgtttccctcacgtccatttgcctgctggttttaaaattccaaagtttgaaaaatacgatggtcacggagacctcatagctcatctaaagatatattgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="87659" stop="86645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87359" g_stop="86945" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-U346766" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87359" e_stop="86945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGATAAGTAATCCACTCTTTGTGTCAATTGCCCCGACTAACAGCATCCGGCAGCCAACGATGGTGCCCAAATCCAACAGCGATCCTCTAACCAAAGTTCGGCATGATCAGAGTTACACTCTTGAAGAGGCCATTAAAATTCCAAGCTCTCATCCCCACATTCATCAACATAGTTCCCCTGTCGAAATTGAGAAGATGGTCAAGAATGAGGAACGTGAAGAAATGACTAAGAAAATGAAGAATTTGGAACAGAGTATAAGAGATATGCAAGGACTAGGAGGCCACAAAGGCATCTCGTTCAGTGACTTGTGTATGTTT-TCTCACGTCCATTTGCCTGCTGGTTTTAAAACTCCAAAGTTTGAAAAATACGATGGTCACGGAGACCCCATAGCTCATCTAAAGATATATTGCAAC</genome_strand>
        <mrna_strand>TATGATAAGTAATCCACTCTTTGTGTCAACTGCCCCGACTAACAACATCCTGTAGACAATGATGGTGCCCAAATCCAACAGCGATCCTCTGCCCAAAGTTCGGCTTGATCACAGTTACACTCTTGAAGAGGCCATTAAAATTCCAAGCTCTCATCCCAACATTCATCAATATGGTTACCCTGTCAAAATTGAGAAGATGGTCAAGAATGAGGAACATGAAGAAATGACTAAGAAAATGAAGAGTTCTGAACAGAGTATAAGAGATATGAAAGGACCAAGAGGCCACAAAGGCATCTCGTTCAGTGACTTGTGTATGTTTCCCTCACGTCCATTTGCCTGCTGGTTTTAAAATTCCAAAGTTTGAAAAATACGATGGTCACGGAGACCTCATAGCTCATCTAAAGATATATTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="98285" stop="99062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98585" g_stop="98761" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98585" e_stop="98761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACATACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="99766" stop="101078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100066" g_stop="100778" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100066" e_stop="100778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCATGTGCCCTAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTAATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTATAGATTCGTAATTCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCAACCTTCTTCTTTACAAACAGAACCGGAGCACCCCAAGGAGATGCATTTGGTCTAATAAAGCCTTTGCTTAGCAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTCA-CAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="101889" stop="101004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101589" g_stop="101304" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101589" e_stop="101304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGGCCATCTTCACTCTATTTCGCGGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAATATCGGCAAAACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335078" ref_strand="-" ref_description="SGN-U335078        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-06, score=56.6)">
      <seq>agtatgtattaagcaatatcataaaattaactaatatccttagcatgcagcatttgcaattaccataacccttggttgcatcaccaagcacatcaatgaggactcacacctcctcatcatacttatttgggaatttagttcattggattgcatatattaacatatttcaagattcatcatatttattcccctcgtgtccttacgtgacactccactcctcaatatactatcctggcaccggaacgtggcacccgatccatattctatcctggtgtcagaacgtgacacccgatccatattctatcctggtgtcggaacgtgacacccgatccatattctatcctggtaccggaacgtggcacccgatccatattctatcctggtgtcggaacgtgacacccgatccatattctatcctggtaccggaacgtggcacccgatcccctaatctcaccactttcgttcatcaagccttcttttataccaaggcatcattattaacaaagtagattagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="101803" stop="103137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102089" g_stop="102470" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102471" i_stop="102701" i_length="231">
            <donor d_prob="0.241" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102702" g_stop="102837" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="515" r_length="133" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-U335078" ref_strand="-">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335078" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102089" e_stop="102470"/>
          <exon e_start="102702" e_stop="102837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATATATTAGATAATATCATAAAATCAATTAATATCCTTAGCATGCAGCATTTACAATTATCATAACCCTTGGTTACAACACCAAGCTCATCAATGAGGACTCACGCCTCCTCATCATACTCATTTGGGAATTAGGTTCATTAGATTGAATATATTAACATCTTTCAAGATTCATTATCTTTATTCCTCTCGTGTCGGTACGTGACACTCCGCTTCTC-ATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGTCACTCTGATCCTTATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTATCGGAACGTGACACTTCTATCCTCATATACTATCCTGGTACCAGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGATACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCAATCCATATTCTATCCTGGTGTCGGAATGTGACACTCCGATCCTCATATACTATCCTGGTACCGAAACGTCGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACAATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGG</genome_strand>
        <mrna_strand>AGTATGTATTAAGCAATATCATAAAATTAACTAATATCCTTAGCATGCAGCATTTGCAATTACCATAACCCTTGGTTGCATCACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTTATTTGGGAATTTAGTTCATTGGATTGCATATATTAACATATTTCAAGATTCATCATATTTATTCCCCTCGTGTCCTTACGTGACACTCCACTCCTCAATATACTATCCTGGCACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCAGAACGTGACACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACAC-CCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTG.......................................................................................................................................................................................................................................GTGTCGGAACGTGACAC-CCGAT-C-CATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACCACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATTATTAACAAAGTAGATTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331099" ref_strand="+" ref_description="SGN-U331099        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: Zinc(evalue: 1e-28, score=129)">
      <seq>agaagcatgtgtctattgaacgagttaggcaagcagtgagatacatcaggcaatctcctgctaggtcgaaaaaatttcaagaatgttgtgaagatgaaaatcttgctaaaaagtctttatgcttggatgttcctacaaggtggaattccacctacatgatgttgagcagggttattgaatatgaaggggcaattgtagagtacgccgatcgtgcaattggcttgacactatatcttaagtttgttgataaaaactctacagctacacttttgagtagtgattgtgagggtgtaaagagaattataaaatttcttgaaatgttttttagtcttactttgaagatatctggttcacgatatgttacatccaatcttcatttttttgaattttttcaagttggtgtttacttgaatcaattgatatcaaatgaagatcaagttttgtctaaaatggaagaaaatatgaaggagaatggcaaatattacggtgatgctgaaaaaatgaataagatggttttcataccatgtgttttggatcctcgtcacaaatttagtactcttggctttgcacttaagaagatgtttggagaaaaaggggctgctatagaaaatggtgtgggaacgtacatggaagccttgtttaatgagtatacaaaccccatttcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-xTKkW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="113030" stop="111766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112738" g_stop="112066" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-U331099" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112738" e_stop="112066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCAAATATGTCAATTGAACGAGTTAGGCGAGCAGTGACATATATCAGGCAATCTCTTGCTTGGAAGTAAAACTTTCAAGAATGTTGTGAAGATGAAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCAATAAGATAGAATTCCACCTACATGATGTTGAGCAAGGTTATTGAATATGAAAGGGCAATTGTAGAGTACGCCGATCGTGATATTGGCTTGTCACTATATCTTAAGTTTGTTGATAAAAATTCTACAGGTACACTTTTGAATAGTGACTGGGAGGGCGTAAAGAGAATTACAAAATTTCTTGAAATGTTTTTTAATCTTACTTTGAAGATATCTGGTTCACGATATGTTACATATAATCTTTATTTTCTTGAAAGTTGTCAAGTTGGTGTTTACTTGAATCAGTTGATATCAAATGAAGATCATGTTTTGGATAAAATGACAGAAAATATGAAGGAGAAATTTGACAACTATTGGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGCGTTTTGGATCCTCGTCACAAATTTAGAACTCTTGGCTTTGAACTTAAGAAGATGTTTGGAGAAAAAGGGGCTGCTATAGAAAATGGTGTGCGAACGTACATGGAAGCTTTGTTTAATGAGTACACAAAGCCCATTTCAAAT</genome_strand>
        <mrna_strand>AGAAGC--ATGTGTCTATTGAACGAGTTAGGCAAGCAGTGAGATACATCAGGCAATCTCCTGCTAGGTCGAAAAAATTTCAAGAATGTTGTGAAGATGAAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGGTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACGCCGATCGTGCAATTGGCTTGACACTATATCTTAAGTTTGTTGATAAAAACTCTACAGCTACACTTTTGAGTAGTGATTGTGAGGGTGTAAAGAGAATTATAAAATTTCTTGAAATGTTTTTTAGTCTTACTTTGAAGATATCTGGTTCACGATATGTTACATCCAATCTTCATTTTTTTGAATTTTTTCAAGTTGGTGTTTACTTGAATCAATTGATATCAAATGAAGATCAAGTTTTGTCTAAAATGGAAGAAAATATGAAGGAG-AA--TGGCAAATATTACGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGGAGAAAAAGGGGCTGCTATAGAAAATGGTGTGGGAACGTACATGGAAGCCTTGTTTAATGAGTATACAAACCCCATTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>14</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1206" PGL_stop="1766"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1206" e_stop="1268"/>
            <exon e_start="1352" e_stop="1499"/>
            <exon e_start="1734" e_stop="1766"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1206" e_stop="1268" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1269" i_stop="1351" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1352" e_stop="1499" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1500" i_stop="1733" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1734" e_stop="1766" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1206" stop="1268"/>
              <exon start="1352" stop="1499"/>
              <exon start="1734" stop="1766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATGATGATGGTTCTGTGCAGAAAATCCCTGAAATTCCAGATGATCTTAAAGTTATTTATAA : GACTGTCTGGGAGATCAAGCAACGGACCCTGGTTGACATGGCTGTAGACCGTGGTTGCTACATAGATCAGAGTCAAAGCCTCAACATCCATATGGATCAACCCAACTTTGGAAAGCTCACTTCCCTTCATTTTCATGCTTGGTCCAGG : GGTTTGAAAACTGGAATGTACTATCTACGATCA</gDNA_template>
            <first_frame> T  *  *  W  F  C  A  E  N  P  *  N  S  R  *  S  *  S  Y  L  *  :  D  C  L  G  D  Q  A  T  D  P  G  *  H  G  C  R  P  W  L  L  H  R  S  E  S  K  P  Q  H  P  Y  G  S  T  Q  L  W  K  A  H  F  P  S  F  S  C  L  V  Q   : G  F  E  N  W  N  V  L  S  T  I  </first_frame>
            <second_frame>  H  D  D  G  S  V  Q  K  I  P  E  I  P  D  D  L  K  V  I  Y  K :   T  V  W  E  I  K  Q  R  T  L  V  D  M  A  V  D  R  G  C  Y  I  D  Q  S  Q  S  L  N  I  H  M  D  Q  P  N  F  G  K  L  T  S  L  H  F  H  A  W  S  R  :  G  L  K  T  G  M  Y  Y  L  R  S </second_frame>
            <third_frame>   M  M  M  V  L  C  R  K  S  L  K  F  Q  M  I  L  K  L  F  I   : R  L  S  G  R  S  S  N  G  P  W  L  T  W  L  *  T  V  V  A  T  *  I  R  V  K  A  S  T  S  I  W  I  N  P  T  L  E  S  S  L  P  F  I  F  M  L  G  P  G :   V  *  K  L  E  C  T  I  Y  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1207" stop="1268"/>
                    <exon start="1352" stop="1499"/>
                    <exon start="1734" stop="1766"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HDDGSVQKIPEIPDDLKVIYKTVWEIKQRTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSRGLKTGMYYLRS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="17963" PGL_stop="19465"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17963" e_stop="18315"/>
            <exon e_start="18693" e_stop="19465"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17963" e_stop="18315" e_length="353"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18316" i_stop="18692" i_length="377"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="18693" e_stop="19465" e_length="773"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17963" stop="18315"/>
              <exon start="18693" stop="19465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATTGTTCTTGTCAACTTTTGCAAAAATAAACATTTCATATATACAAATATACATGTGTAATATTGTTCACTACAAGGTGGCGAATTCGAATGATAACAGGAGTAGTAGACAAGACGATGAAGGGATTAATGTGTTTAATACGATGTTTCAAGGGAATATTAATAGAGAAGAAGAAATGTCTGTTATGGTTTCTGCATTAACTCGTGTTGTTGTTGGTAATCATCCTAGTGAAAATATCGAAAATCATCATCAAAATAATACATTGATTTCTAGGGGTGTTGGAGAAAAAAGAGGACGTGATGAAGTATTATTACATGGAACTAATTCTTCTCATATGATATTATCATCAG : GTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAGACGACGATACAGAGGAGTTAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATAAGAGATCCATATAAAGCAGCGCGTGTTTGGTTAGGTACTTTTGATACTGCTGAAGGGGCTGCTAGAGCTTATGATGAAGCTGCTCTTACATTTAGAGGTAGTAAAGCAAAACTAAATTTCCCAGAAAATGTTACATTATTAGTGCCTTCTTCAATTCAACAACCCATTTACTCCTCACCCGACCCAGCCATTTCTCCGTATCGTTCCAATTTTATTATTGGACATACCTCTACGGAAGTGGAGCCTATACTTCACACCAATCCTTCAAATTTTATTGAGCCTATAGCTCACACTTCATCTCTGTATCGTTCCAATTTTATTGAACGGAATCATCACATGGTGCAGCAGGAGCCGTATTTTCAGGCAGGTAGTACTAGTGGTGGAAGTGATTTTCATCAAACTACAAATTCTTCTAATTCGTCAATTTATGATCACCCTTCTTCTTCATCTGGATAATTTTTGTTGTACTACTAGAATATCTTTTTCATCTTCCTAGAAGATTTTGACTAGCTAATAGTGATTTTTCTTTTAAAGGAATGTATTGGTGGCCCCACATAAATGAGGTCCTTTTATTTTCTTGCATAACAGTCTTTAATTTGACTTTTGTTGGTATTC</gDNA_template>
            <first_frame> F  I  V  L  V  N  F  C  K  N  K  H  F  I  Y  T  N  I  H  V  *  Y  C  S  L  Q  G  G  E  F  E  *  *  Q  E  *  *  T  R  R  *  R  D  *  C  V  *  Y  D  V  S  R  E  Y  *  *  R  R  R  N  V  C  Y  G  F  C  I  N  S  C  C  C  W  *  S  S  *  *  K  Y  R  K  S  S  S  K  *  Y  I  D  F  *  G  C  W  R  K  K  R  T  *  *  S  I  I  T  W  N  *  F  F  S  Y  D  I  I  I  R :   W  *  R  F  K  H  *  D  N  K  R  S  N  I  H  I  H  *  F  N  K  Q  *  H  Y  *  *  I  C  *  *  S  S  K  T  T  I  Q  R  S  *  T  E  A  M  G  E  M  G  S  *  N  K  R  S  I  *  S  S  A  C  L  V  R  Y  F  *  Y  C  *  R  G  C  *  S  L  *  *  S  C  S  Y  I  *  R  *  *  S  K  T  K  F  P  R  K  C  Y  I  I  S  A  F  F  N  S  T  T  H  L  L  L  T  R  P  S  H  F  S  V  S  F  Q  F  Y  Y  W  T  Y  L  Y  G  S  G  A  Y  T  S  H  Q  S  F  K  F  Y  *  A  Y  S  S  H  F  I  S  V  S  F  Q  F  Y  *  T  E  S  S  H  G  A  A  G  A  V  F  S  G  R  *  Y  *  W  W  K  *  F  S  S  N  Y  K  F  F  *  F  V  N  L  *  S  P  F  F  F  I  W  I  I  F  V  V  L  L  E  Y  L  F  H  L  P  R  R  F  *  L  A  N  S  D  F  S  F  K  G  M  Y  W  W  P  H  I  N  E  V  L  L  F  S  C  I  T  V  F  N  L  T  F  V  G  I  </first_frame>
            <second_frame>  S  L  F  L  S  T  F  A  K  I  N  I  S  Y  I  Q  I  Y  M  C  N  I  V  H  Y  K  V  A  N  S  N  D  N  R  S  S  R  Q  D  D  E  G  I  N  V  F  N  T  M  F  Q  G  N  I  N  R  E  E  E  M  S  V  M  V  S  A  L  T  R  V  V  V  G  N  H  P  S  E  N  I  E  N  H  H  Q  N  N  T  L  I  S  R  G  V  G  E  K  R  G  R  D  E  V  L  L  H  G  T  N  S  S  H  M  I  L  S  S   : G  G  E  G  S  S  I  R  T  T  R  E  A  T  F  I  Y  T  N  S  T  N  N  S  I  I  D  E  S  V  N  N  Q  V  R  R  R  Y  R  G  V  R  Q  R  P  W  G  K  W  A  A  E  I  R  D  P  Y  K  A  A  R  V  W  L  G  T  F  D  T  A  E  G  A  A  R  A  Y  D  E  A  A  L  T  F  R  G  S  K  A  K  L  N  F  P  E  N  V  T  L  L  V  P  S  S  I  Q  Q  P  I  Y  S  S  P  D  P  A  I  S  P  Y  R  S  N  F  I  I  G  H  T  S  T  E  V  E  P  I  L  H  T  N  P  S  N  F  I  E  P  I  A  H  T  S  S  L  Y  R  S  N  F  I  E  R  N  H  H  M  V  Q  Q  E  P  Y  F  Q  A  G  S  T  S  G  G  S  D  F  H  Q  T  T  N  S  S  N  S  S  I  Y  D  H  P  S  S  S  S  G  *  F  L  L  Y  Y  *  N  I  F  F  I  F  L  E  D  F  D  *  L  I  V  I  F  L  L  K  E  C  I  G  G  P  T  *  M  R  S  F  Y  F  L  A  *  Q  S  L  I  *  L  L  L  V  F </second_frame>
            <third_frame>   H  C  S  C  Q  L  L  Q  K  *  T  F  H  I  Y  K  Y  T  C  V  I  L  F  T  T  R  W  R  I  R  M  I  T  G  V  V  D  K  T  M  K  G  L  M  C  L  I  R  C  F  K  G  I  L  I  E  K  K  K  C  L  L  W  F  L  H  *  L  V  L  L  L  V  I  I  L  V  K  I  S  K  I  I  I  K  I  I  H  *  F  L  G  V  L  E  K  K  E  D  V  M  K  Y  Y  Y  M  E  L  I  L  L  I  *  Y  Y  H  Q  :  V  V  K  V  Q  A  L  G  Q  Q  E  K  Q  H  S  Y  T  L  I  Q  Q  T  I  A  L  L  M  N  L  L  I  I  K  *  D  D  D  T  E  E  L  D  R  G  H  G  G  N  G  Q  L  K  *  E  I  H  I  K  Q  R  V  F  G  *  V  L  L  I  L  L  K  G  L  L  E  L  M  M  K  L  L  L  H  L  E  V  V  K  Q  N  *  I  S  Q  K  M  L  H  Y  *  C  L  L  Q  F  N  N  P  F  T  P  H  P  T  Q  P  F  L  R  I  V  P  I  L  L  L  D  I  P  L  R  K  W  S  L  Y  F  T  P  I  L  Q  I  L  L  S  L  *  L  T  L  H  L  C  I  V  P  I  L  L  N  G  I  I  T  W  C  S  R  S  R  I  F  R  Q  V  V  L  V  V  E  V  I  F  I  K  L  Q  I  L  L  I  R  Q  F  M  I  T  L  L  L  H  L  D  N  F  C  C  T  T  R  I  S  F  S  S  S  *  K  I  L  T  S  *  *  *  F  F  F  *  R  N  V  L  V  A  P  H  K  *  G  P  F  I  F  L  H  N  S  L  *  F  D  F  C  W  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17964" stop="18315"/>
                    <exon start="18693" stop="19306"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>963</number_coding_nucleotides>
                  <number_encoded_amino_acids>321</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFLSTFAKINISYIQIYMCNIVHYKVANSNDNRSSRQDDEGINVFNTMFQGNINREEEMSVMVSALTRVVVGNHPSENIENHHQNNTLISRGVGEKRGRDEVLLHGTNSSHMILSSGGEGSSIRTTREATFIYTNSTNNSIIDESVNNQVRRRYRGVRQRPWGKWAAEIRDPYKAARVWLGTFDTAEGAARAYDEAALTFRGSKAKLNFPENVTLLVPSSIQQPIYSSPDPAISPYRSNFIIGHTSTEVEPILHTNPSNFIEPIAHTSSLYRSNFIERNHHMVQQEPYFQAGSTSGGSDFHQTTNSSNSSIYDHPSSSSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="37920" PGL_stop="29096"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37920" e_stop="37852"/>
            <exon e_start="37768" e_stop="37574"/>
            <exon e_start="35164" e_stop="35057"/>
            <exon e_start="34973" e_stop="34869"/>
            <exon e_start="34726" e_stop="34670"/>
            <exon e_start="34548" e_stop="34537"/>
            <exon e_start="29579" e_stop="29417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37920" e_stop="37852" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37768" e_stop="37574" e_length="195"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35164" e_stop="35057" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.921">
            <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34973" e_stop="34869" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34726" e_stop="34670" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.904">
            <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34548" e_stop="34537" e_length="12"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34536" i_stop="29580" i_length="4957"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29579" e_stop="29417" e_length="163"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37920" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34537"/>
              <exon start="29579" stop="29417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335617" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATG : GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG : GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG : ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT : GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA : GTTCGTCTATGC : AAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTG</gDNA_template>
            <first_frame> S  L  S  F  R  V  S  E  N  R  S  Q  S  N  S  E  K  N  S  I  I  N  M  :  E  G  D  G  K  L  E  A  Q  I  E  V  L  L  N  V  E  K  Q  M  R  Q  A  G  D  V  A  A  T  R  K  A  A  I  D  I  L  Q  L  C  F  E  A  R  A  W  K  T  L  N  E  Q  I  V  L  L  S  K  R  R  G  Q  L  K  Q  :  A  V  Q  A  M  V  Q  Q  A  M  Q  Y  I  D  Q  T  P  D  L  D  T  K  I  E  L  I  K  T  L  N  S  V  S  A  G  K  :  I  Y  V  E  I  E  R  A  R  L  I  K  K  L  A  K  I  K  E  E  Q  K  L  I  G  E  A  A  D  L  M  Q  E  V  A  :  V  E  T  F  G  A  M  A  K  T  E  K  I  A  F  I  L  E  Q  :  V  R  L  C  :  K  E  T  M  V  H  K  A  A  L  K  A  *  K  T  L  I  G  Q  L  Y  W  *  E  P  S  R  A  S  H  Q  L  *  Q  F  R  S  G  R  S  L  *  Q  S  *  N  P  F  C  S  T  L  Y  S  </first_frame>
            <second_frame>  L  S  L  L  G  F  L  R  I  D  L  N  R  T  P  K  K  T  Q  *  S  I  W :   K  V  M  G  N  W  R  R  K  L  R  C  F  *  M  *  R  S  R  *  G  K  L  A  M  S  L  L  L  E  K  Q  L  *  T  F  F  S  F  A  S  K  L  A  H  G  K  L  *  M  N  R  L  F  Y  C  L  S  A  V  D  N  *  N  R :   L  Y  R  P  W  S  N  R  P  C  N  T  L  T  R  R  P  I  L  T  P  R  *  N  L  S  K  H  *  T  V  C  L  L  E  R :   Y  T  L  R  L  R  E  L  A  *  L  R  S  S  Q  R  L  K  K  N  K  N  S  *  A  R  L  L  I  *  C  K  K  L  L :   L  K  P  L  E  R  W  Q  K  L  K  R  *  P  L  F  L  N  K :   F  V  Y  A :   K  K  Q  W  C  T  K  L  L  *  R  L  R  R  L  *  S  D  N  S  T  G  R  S  Q  A  E  P  H  I  N  Y  S  N  S  G  L  D  V  H  C  D  K  V  E  I  L  F  A  V  L  S  I  L </second_frame>
            <third_frame>   S  L  F  *  G  F  *  E  S  I  S  I  E  L  R  K  K  L  N  N  Q  Y   : G  R  *  W  E  I  G  G  A  N  *  G  A  S  E  C  R  E  A  D  E  A  S  W  R  C  R  C  Y  *  K  S  S  Y  R  H  S  S  A  L  L  R  S  S  R  M  E  N  F  K  *  T  D  C  S  I  V  *  A  P  W  T  I  E  T   : G  C  T  G  H  G  P  T  G  H  A  I  H  *  P  D  A  R  S  *  H  Q  D  R  T  Y  Q  N  T  E  Q  C  V  C  W  K   : D  I  R  *  D  *  E  S  S  L  D  *  E  A  R  K  D  *  R  R  T  K  T  H  R  R  G  C  *  F  D  A  R  S  C   : C  *  N  L  W  S  D  G  K  N  *  K  D  S  L  Y  S  *  T   : S  S  S  M   : Q  R  N  N  G  A  Q  S  C  F  K  G  L  E  D  F  D  R  T  T  L  L  V  G  A  K  P  S  L  T  S  I  I  A  I  P  V  W  T  F  I  V  T  K  L  K  S  F  L  Q  Y  S  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37920" stop="37852"/>
                    <exon start="37768" stop="37574"/>
                    <exon start="35164" stop="35057"/>
                    <exon start="34973" stop="34869"/>
                    <exon start="34726" stop="34670"/>
                    <exon start="34548" stop="34537"/>
                    <exon start="29579" stop="29541"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLSFRVSENRSQSNSEKNSIINMEGDGKLEAQIEVLLNVEKQMRQAGDVAATRKAAIDILQLCFEARAWKTLNEQIVLLSKRRGQLKQAVQAMVQQAMQYIDQTPDLDTKIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQKLIGEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCKETMVHKAALKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37916" e_stop="37852"/>
            <exon e_start="37768" e_stop="37574"/>
            <exon e_start="35164" e_stop="35057"/>
            <exon e_start="34973" e_stop="34869"/>
            <exon e_start="34726" e_stop="34670"/>
            <exon e_start="34548" e_stop="34352"/>
            <exon e_start="33269" e_stop="33170"/>
            <exon e_start="31703" e_stop="31591"/>
            <exon e_start="30677" e_stop="30524"/>
            <exon e_start="30414" e_stop="30337"/>
            <exon e_start="29759" e_stop="29096"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37916" e_stop="37852" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37768" e_stop="37574" e_length="195"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35164" e_stop="35057" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.921">
            <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34973" e_stop="34869" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34726" e_stop="34670" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.904">
            <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34548" e_stop="34352" e_length="197"/>
          </exon>
          <intron i_serial="6" don_prob="0.873" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34351" i_stop="33270" i_length="1082"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33269" e_stop="33170" e_length="100"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.791">
            <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31703" e_stop="31591" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.947" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31590" i_stop="30678" i_length="913"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="30677" e_stop="30524" e_length="154"/>
          </exon>
          <intron i_serial="9" don_prob="0.990" acc_prob="0.990">
            <gDNA_intron_boundary i_start="30523" i_stop="30415" i_length="109"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30414" e_stop="30337" e_length="78"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30336" i_stop="29760" i_length="577"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="29759" e_stop="29096" e_length="664"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37916" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATG : GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG : GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG : ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT : GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA : GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAG : GTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCA : GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAG : GCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCAC : AACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAG : GAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTAATTGCTTATTTACTCATCATCACATTCATTAGCGCTGTAGTTTTATTTTGTAATGCATCCTTCTTTAGGGGTTAGCAAAAGGAAAATGGCTTTCTTTTCCCCTTTTAAAATG</gDNA_template>
            <first_frame> S  L  L  G  F  L  R  I  D  L  N  R  T  P  K  K  T  Q  *  S  I  W :   K  V  M  G  N  W  R  R  K  L  R  C  F  *  M  *  R  S  R  *  G  K  L  A  M  S  L  L  L  E  K  Q  L  *  T  F  F  S  F  A  S  K  L  A  H  G  K  L  *  M  N  R  L  F  Y  C  L  S  A  V  D  N  *  N  R :   L  Y  R  P  W  S  N  R  P  C  N  T  L  T  R  R  P  I  L  T  P  R  *  N  L  S  K  H  *  T  V  C  L  L  E  R :   Y  T  L  R  L  R  E  L  A  *  L  R  S  S  Q  R  L  K  K  N  K  N  S  *  A  R  L  L  I  *  C  K  K  L  L :   L  K  P  L  E  R  W  Q  K  L  K  R  *  P  L  F  L  N  K :   F  V  Y  A  *  I  I  K  I  M  F  V  L  K  F  S  R  E  R  S  I  P  E  C  L  K  L  I  H  L  K  K  R  R  K  Q  R  R  V  K  M  W  L  R  N  L  L  Q  I  F  R  H  C  Q  S  *  S  R  S  T  I  N  *  *  L   : G  I  T  H  I  A  M  I  T  L  K  Y  V  A  V  T  R  L  Y  M  R  S  L  P  *  K  K  T  Q  H  S  G  Y  Q :   F  *  G  K  F  A  G  T  W  Y  C  L  P  M  I  L  C  N  Q  V  F  I  T  Q  L  W  R  T  K  I  F  Q  K  F  L  I  S   : G  C  F  *  S  N  *  L  P  W  K  S  F  S  G  L  L  Y  G  T  H  S  R  M  S  L  K  M  R  R  I  C  L  V  A  L  W  G  T  R  L  L  K  T  S  N  *  E  L  L  S  T :   T  S  L  S  S  Q  N  T  T  Q  E  *  P  *  R  G  W  L  F  Y  C  A  S  I  F  R :   K  R  R  S  T  Y  L  K  W  L  Y  Q  K  L  W  L  L  K  *  T  D  L  W  V  L  S  V  S  N  P  Q  K  T  A  M  I  S  *  I  L  G  R  L  I  W  R  S  C  L  T  L  S  K  R  V  A  T  R  S  T  K  K  Q  W  C  T  K  L  L  *  R  L  R  R  L  *  S  D  N  S  T  G  R  S  Q  A  E  P  H  I  N  Y  S  N  S  G  L  D  V  H  C  D  K  V  E  I  L  F  A  V  L  S  I  L  R  N  K  Q  Q  E  Q  K  L  A  N  L  D  S  S  A  C  T  I  T  I  C  L  L  A  F  L  V  V  G  V  S  F  S  S  P  I  L  Y  L  Y  L  T  F  L  R  M  I  Y  S  L  *  S  A  K  I  *  V  *  C  Q  E  I  R  D  V  K  F  H  *  L  L  I  Y  S  S  S  H  S  L  A  L  *  F  Y  F  V  M  H  P  S  L  G  V  S  K  R  K  M  A  F  F  S  P  F  K  M </first_frame>
            <second_frame>  L  F  *  G  F  *  E  S  I  S  I  E  L  R  K  K  L  N  N  Q  Y   : G  R  *  W  E  I  G  G  A  N  *  G  A  S  E  C  R  E  A  D  E  A  S  W  R  C  R  C  Y  *  K  S  S  Y  R  H  S  S  A  L  L  R  S  S  R  M  E  N  F  K  *  T  D  C  S  I  V  *  A  P  W  T  I  E  T   : G  C  T  G  H  G  P  T  G  H  A  I  H  *  P  D  A  R  S  *  H  Q  D  R  T  Y  Q  N  T  E  Q  C  V  C  W  K   : D  I  R  *  D  *  E  S  S  L  D  *  E  A  R  K  D  *  R  R  T  K  T  H  R  R  G  C  *  F  D  A  R  S  C   : C  *  N  L  W  S  D  G  K  N  *  K  D  S  L  Y  S  *  T   : S  S  S  M  L  R  S  *  R  L  C  S  C  S  N  S  L  E  K  D  Q  S  Q  S  V  *  S  *  S  I  *  R  K  E  E  S  K  G  G  *  K  C  G  *  G  T  C  C  R  Y  S  V  T  A  R  V  E  A  D  L  L  S  I  N  D  *  :  V  L  L  T  *  Q  *  L  P  *  N  M  S  L  L  Q  G  Y  I  *  D  P  F  R  E  R  R  P  S  T  V  D  T   : S  S  E  E  N  L  L  V  L  G  I  V  S  P  *  F  Y  A  I  K  S  S  *  L  N  F  G  G  Q  K  S  F  R  N  S  S  F  Q  :  A  A  S  E  A  I  D  Y  H  G  S  H  S  V  D  C  F  M  E  H  I  Q  G  *  V  *  K  *  E  E  Y  A  W  W  H  F  G  G  Q  G  C  *  R  P  Q  T  E  S  Y  *  A   : Q  H  P  C  R  L  K  I  L  L  K  N  N  L  E  E  A  G  C  F  T  V  P  R  Y  S   : G  S  G  E  A  P  I  *  N  G  C  I  K  S  F  G  C  *  N  R  Q  T  Y  G  Y  C  L  F  P  T  P  K  R  Q  Q  *  Y  L  E  F  L  G  V  *  F  G  E  A  A  *  P  C  R  K  E  L  P  P  D  P  Q  R  N  N  G  A  Q  S  C  F  K  G  L  E  D  F  D  R  T  T  L  L  V  G  A  K  P  S  L  T  S  I  I  A  I  P  V  W  T  F  I  V  T  K  L  K  S  F  L  Q  Y  S  L  F  *  E  T  S  N  K  S  K  N  S  Q  I  L  I  P  L  P  V  L  S  R  F  A  C  L  L  F  S  L  S  E  F  H  F  L  P  P  F  C  I  F  I  *  R  F  S  A  *  F  I  H  C  D  Q  Q  K  F  R  F  D  A  K  R  S  E  M  S  S  S  I  N  C  L  F  T  H  H  H  I  H  *  R  C  S  F  I  L  *  C  I  L  L  *  G  L  A  K  G  K  W  L  S  F  P  L  L  K   </second_frame>
            <third_frame>   S  F  R  V  S  E  N  R  S  Q  S  N  S  E  K  N  S  I  I  N  M  :  E  G  D  G  K  L  E  A  Q  I  E  V  L  L  N  V  E  K  Q  M  R  Q  A  G  D  V  A  A  T  R  K  A  A  I  D  I  L  Q  L  C  F  E  A  R  A  W  K  T  L  N  E  Q  I  V  L  L  S  K  R  R  G  Q  L  K  Q  :  A  V  Q  A  M  V  Q  Q  A  M  Q  Y  I  D  Q  T  P  D  L  D  T  K  I  E  L  I  K  T  L  N  S  V  S  A  G  K  :  I  Y  V  E  I  E  R  A  R  L  I  K  K  L  A  K  I  K  E  E  Q  K  L  I  G  E  A  A  D  L  M  Q  E  V  A  :  V  E  T  F  G  A  M  A  K  T  E  K  I  A  F  I  L  E  Q  :  V  R  L  C  L  D  H  K  D  Y  V  R  A  Q  I  L  S  R  K  I  N  P  R  V  F  E  A  D  P  S  K  E  K  K  K  A  K  E  G  E  N  V  V  E  E  P  A  A  D  I  P  S  L  P  E  L  K  Q  I  Y  Y  Q  L  M  I  R :   Y  Y  S  H  S  N  D  Y  L  E  I  C  R  C  Y  K  A  I  Y  E  I  P  S  V  K  E  D  P  A  Q  W  I  P  :  V  L  R  K  I  C  W  Y  L  V  L  S  P  H  D  S  M  Q  S  S  L  H  N  S  T  L  E  D  K  N  L  S  E  I  P  H  F  R :   L  L  L  K  Q  L  I  T  M  E  V  I  Q  W  T  A  L  W  N  T  F  K  D  E  F  E  N  E  K  N  M  P  G  G  T  L  G  D  K  A  A  E  D  L  K  L  R  V  I  E  H  :  N  I  L  V  V  S  K  Y  Y  S  R  I  T  L  K  R  L  A  V  L  L  C  L  D  I  Q  :  E  A  E  K  H  L  S  E  M  V  V  S  K  A  L  V  A  K  I  D  R  P  M  G  I  V  C  F  Q  P  P  K  D  S  N  D  I  L  N  S  W  A  S  N  L  E  K  L  L  D  L  V  E  K  S  C  H  Q  I  H  K  E  T  M  V  H  K  A  A  L  K  A  *  K  T  L  I  G  Q  L  Y  W  *  E  P  S  R  A  S  H  Q  L  *  Q  F  R  S  G  R  S  L  *  Q  S  *  N  P  F  C  S  T  L  Y  S  E  K  Q  A  T  R  A  K  T  R  K  S  *  F  L  C  L  Y  Y  H  D  L  P  A  C  F  S  R  C  R  S  F  I  F  F  P  H  F  V  S  L  S  D  V  S  P  H  D  L  F  I  V  I  S  K  N  L  G  L  M  P  R  D  Q  R  C  Q  V  P  L  I  A  Y  L  L  I  I  T  F  I  S  A  V  V  L  F  C  N  A  S  F  F  R  G  *  Q  K  E  N  G  F  L  F  P  F  *  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37914" stop="37852"/>
                    <exon start="37768" stop="37574"/>
                    <exon start="35164" stop="35057"/>
                    <exon start="34973" stop="34869"/>
                    <exon start="34726" stop="34670"/>
                    <exon start="34548" stop="34352"/>
                    <exon start="33269" stop="33170"/>
                    <exon start="31703" stop="31591"/>
                    <exon start="30677" stop="30524"/>
                    <exon start="30414" stop="30337"/>
                    <exon start="29759" stop="29541"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1386</number_coding_nucleotides>
                  <number_encoded_amino_acids>462</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFRVSENRSQSNSEKNSIINMEGDGKLEAQIEVLLNVEKQMRQAGDVAATRKAAIDILQLCFEARAWKTLNEQIVLLSKRRGQLKQAVQAMVQQAMQYIDQTPDLDTKIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQKLIGEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDHKDYVRAQILSRKINPRVFEADPSKEKKKAKEGENVVEEPAADIPSLPELKQIYYQLMIRYYSHSNDYLEICRCYKAIYEIPSVKEDPAQWIPVLRKICWYLVLSPHDSMQSSLHNSTLEDKNLSEIPHFRLLLKQLITMEVIQWTALWNTFKDEFENEKNMPGGTLGDKAAEDLKLRVIEHNILVVSKYYSRITLKRLAVLLCLDIQEAEKHLSEMVVSKALVAKIDRPMGIVCFQPPKDSNDILNSWASNLEKLLDLVEKSCHQIHKETMVHKAALKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29530" stop="29261"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDNSTGRSQAEPHINYSNSGLDVHCDKVEILFAVLSILRNKQQEQKLANLDSSACTITICLLAFLVVGVSFSSPILYLYLTFLRMIYSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="48264" PGL_stop="48919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48264" e_stop="48919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="48264" e_stop="48919" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48264" stop="48919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGATCAACCAGGTTCTTACTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTTCGGGAGTACAACATGCAACTGCTGTGGCTCCCTGCATGGATGCCTCATTGGAAGTAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACGGGTAATCAGCATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTTAGGATGCCTATGATTTTCTAATTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATTCAGTGTTGAGTTTGTGACATATCAGTTTCAGTGGAATGCCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGACATCATTCTCTAGCTTATTTATGGAAAAGTATATACCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCTTAAGCCTAGAGCAAGGAAGGATGTCTGTTGCTGCTTATGAGGCCAAATTTCGTGCGCTATCCAGGTATGCCACTTAGCTTTGCTTCAGTCCACAAGAGCAGATTCGCCACTTTGTGAAAGGATTGAGGTCAGATTTGTAGGTCCCAGCCTTACAGGTAGCT</gDNA_template>
            <first_frame> R  *  S  T  R  F  L  L  I  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  Y  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  D  *  L  Q  G  L  *  *  R  V  I  S  M  N  F  S  L  N  S  *  S  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  *  L  I  V  M  S  C  Y  I  R  W  T  *  *  N  D  S  V  L  S  L  *  H  I  S  F  S  G  M  P  K  C  G  G  G  R  M  L  S  V  N  Q  H  R  H  H  L  *  L  G  H  H  S  L  A  Y  L  W  K  S  I  Y  P  G  L  *  G  I  G  G  E  M  S  S  *  A  *  S  K  E  G  C  L  L  L  L  M  R  P  N  F  V  R  Y  P  G  M  P  L  S  F  A  S  V  H  K  S  R  F  A  T  L  *  K  D  *  G  Q  I  C  R  S  Q  P  Y  R  *   </first_frame>
            <second_frame>  D  D  Q  P  G  S  Y  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  S  C  T  S  T  S  G  F  G  S  T  T  C  N  C  C  G  S  L  H  G  C  L  I  G  S  R  H  V  S  S  I  D  Y  R  V  Y  N  D  G  *  S  A  *  T  F  H  *  I  L  E  V  E  T  S  S  L  Q  G  C  *  I  L  G  C  L  *  F  S  N  *  L  S  *  A  A  T  *  D  G  H  S  R  T  I  Q  C  *  V  C  D  I  S  V  S  V  E  C  Q  N  V  V  A  V  V  C  *  V  S  T  S  T  G  T  T  Y  D  L  D  I  I  L  *  L  I  Y  G  K  V  Y  T  P  D  F  E  G  *  E  E  R  *  V  L  K  P  R  A  R  K  D  V  C  C  C  L  *  G  Q  I  S  C  A  I  Q  V  C  H  L  A  L  L  Q  S  T  R  A  D  S  P  L  C  E  R  I  E  V  R  F  V  G  P  S  L  T  G  S  </second_frame>
            <third_frame>   M  I  N  Q  V  L  T  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  P  V  P  A  P  Q  V  S  G  V  Q  H  A  T  A  V  A  P  C  M  D  A  S  L  E  V  G  T  F  P  R  L  T  T  G  S  I  M  T  G  N  Q  H  E  L  F  T  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  *  D  A  Y  D  F  L  I  D  C  H  E  L  L  H  K  M  D  I  V  E  R  F  S  V  E  F  V  T  Y  Q  F  Q  W  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  T  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  R  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  A  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  *  L  C  F  S  P  Q  E  Q  I  R  H  F  V  K  G  L  R  S  D  L  *  V  P  A  L  Q  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48521" stop="48835"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAYDFLIDCHELLHKMDIVERFSVEFVTYQFQWNAKMWWRSYVECQPAQAPPMTWTSFSSLFMEKYIPRTLRDRRRDEFLSLEQGRMSVAAYEAKFRALSRYAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48266" stop="48520"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MINQVLTYLSGLSDQGQTPPVFPVPAPQVSGVQHATAVAPCMDASLEVGTFPRLTTGSIMTGNQHELFTKFLKLKPPVFKGAES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="49829" PGL_stop="49499"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49829" e_stop="49499"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="49829" e_stop="49499" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49829" stop="49499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCGTAGGCTTGGCCAATGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAATTTGGAGAAAGCCAAGTCAAACCCAGAATCACATCAAAATCAACCATTTCTAGAATAATCAAATCTACATGAGTATTGCTCCCCACAAAAGTCACAAGACAAGACCTATAAACCTTCTCAACTATCACAGACTCCCCCACAGGAGTAGAGACACGAATAGGCATGTCAAGCAAATCACAATATACATCAAGACCAGTAGCAAAGGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  *  A  W  P  M  S  Q  F  *  H  Y  N  L  R  L  Q  N  L  E  K  A  K  S  N  P  E  S  H  Q  N  Q  P  F  L  E  *  S  N  L  H  E  Y  C  S  P  Q  K  S  Q  D  K  T  Y  K  P  S  Q  L  S  Q  T  P  P  Q  E  *  R  H  E  *  A  C  Q  A  N  H  N  I  H  Q  D  Q  *  Q  R  R  K  I  H  M  K  M  W  I  Q  D  Q  I  I  Q  K  P  C  N  H  K  P  </first_frame>
            <second_frame>  I  C  R  R  L  G  Q  C  H  S  F  S  I  T  I  *  D  C  K  I  W  R  K  P  S  Q  T  Q  N  H  I  K  I  N  H  F  *  N  N  Q  I  Y  M  S  I  A  P  H  K  S  H  K  T  R  P  I  N  L  L  N  Y  H  R  L  P  H  R  S  R  D  T  N  R  H  V  K  Q  I  T  I  Y  I  K  T  S  S  K  G  G  R  Y  I  *  K  C  G  S  R  I  K  *  Y  R  S  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  V  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  K  P  R  I  T  S  K  S  T  I  S  R  I  I  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  *  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  K  S  Q  Y  T  S  R  P  V  A  K  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0020F17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="70476" PGL_stop="70043"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70476" e_stop="70043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="70476" e_stop="70043" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70476" stop="70043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330281" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGTTCAATTAGATTAATTTGATTTTTTTTTAAAAAAATATAGATACATAAAAATTATTTGAATTGTGATTTCTTTTGCATATCAAAACGATAAAAAAAAGTTGTTTGTAAAATGTTTGTCAACAATTGATAGTGAACGAGTAGAGTAGAATATTTGAGGTACTGATGTTCTTTATTGAAATAATTGGGTAAAATAAGTAAATATAAATATAAAATTATTAAAATTGTAGCTTAAATAGCACAAACAAGAATGATAGATCTCTTCATGTACGAGTTTCAATACCACTAATGCAAATAAATAGTGGTATAGTTTATAACAAGTTCTTTACAAAATGTCTATTTATATGGTAACACTAAAATTTAAATTATAATTTAGTATACATTATATTAATTACACGCAAAACTCATTTAACATAAAAAAAAAAAAGAGTT</gDNA_template>
            <first_frame> Q  S  S  I  R  L  I  *  F  F  F  K  K  I  *  I  H  K  N  Y  L  N  C  D  F  F  C  I  S  K  R  *  K  K  V  V  C  K  M  F  V  N  N  *  *  *  T  S  R  V  E  Y  L  R  Y  *  C  S  L  L  K  *  L  G  K  I  S  K  Y  K  Y  K  I  I  K  I  V  A  *  I  A  Q  T  R  M  I  D  L  F  M  Y  E  F  Q  Y  H  *  C  K  *  I  V  V  *  F  I  T  S  S  L  Q  N  V  Y  L  Y  G  N  T  K  I  *  I  I  I  *  Y  T  L  Y  *  L  H  A  K  L  I  *  H  K  K  K  K  E   </first_frame>
            <second_frame>  K  V  Q  L  D  *  F  D  F  F  L  K  K  Y  R  Y  I  K  I  I  *  I  V  I  S  F  A  Y  Q  N  D  K  K  K  L  F  V  K  C  L  S  T  I  D  S  E  R  V  E  *  N  I  *  G  T  D  V  L  Y  *  N  N  W  V  K  *  V  N  I  N  I  K  L  L  K  L  *  L  K  *  H  K  Q  E  *  *  I  S  S  C  T  S  F  N  T  T  N  A  N  K  *  W  Y  S  L  *  Q  V  L  Y  K  M  S  I  Y  M  V  T  L  K  F  K  L  *  F  S  I  H  Y  I  N  Y  T  Q  N  S  F  N  I  K  K  K  K  S  </second_frame>
            <third_frame>   K  F  N  *  I  N  L  I  F  F  *  K  N  I  D  T  *  K  L  F  E  L  *  F  L  L  H  I  K  T  I  K  K  S  C  L  *  N  V  C  Q  Q  L  I  V  N  E  *  S  R  I  F  E  V  L  M  F  F  I  E  I  I  G  *  N  K  *  I  *  I  *  N  Y  *  N  C  S  L  N  S  T  N  K  N  D  R  S  L  H  V  R  V  S  I  P  L  M  Q  I  N  S  G  I  V  Y  N  K  F  F  T  K  C  L  F  I  W  *  H  *  N  L  N  Y  N  L  V  Y  I  I  L  I  T  R  K  T  H  L  T  *  K  K  K  R  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0020F17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="86732" PGL_stop="86292"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86732" e_stop="86292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="86732" e_stop="86292" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86732" stop="86292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAATTTTCGTGAATATGCTATCAGATGGAGGGAACAAGCTGCTAGAGTTAAACCAACGACGAAGGAGTCAGAGATGATCAACATTTTTCTCCAAGCGCAAGAACCTGATTACTTTCACTATCTGCTTTCTGCCATATGGAAGTCATTCGCTGAAGATAAGGTAGGGGAAATAGTGGGAAATGGCATCAAGTCTGGAAAGATTGTAAGTCAAGATGCCTTAAAAGTCACAACACAAGTGCTTCAAAATGGTTCTGGAAATATTGGAGGGAAGAAGAGAAGGGAGGATGTGGCCACTATTGTATCAGCGCCTAGGACTCATGTTCAAGGTAATTCCCCACAAGACTATTTTCCTTCCCAAGCTCCACAATATTCTGTTCCATACAGTCCATATCATGTTTTTAATGCACAACCAATTGCACCCCGTTCTTATCCACAATG</gDNA_template>
            <first_frame> G  K  F  S  *  I  C  Y  Q  M  E  G  T  S  C  *  S  *  T  N  D  E  G  V  R  D  D  Q  H  F  S  P  S  A  R  T  *  L  L  S  L  S  A  F  C  H  M  E  V  I  R  *  R  *  G  R  G  N  S  G  K  W  H  Q  V  W  K  D  C  K  S  R  C  L  K  S  H  N  T  S  A  S  K  W  F  W  K  Y  W  R  E  E  E  K  G  G  C  G  H  Y  C  I  S  A  *  D  S  C  S  R  *  F  P  T  R  L  F  S  F  P  S  S  T  I  F  C  S  I  Q  S  I  S  C  F  *  C  T  T  N  C  T  P  F  L  S  T  M </first_frame>
            <second_frame>  E  N  F  R  E  Y  A  I  R  W  R  E  Q  A  A  R  V  K  P  T  T  K  E  S  E  M  I  N  I  F  L  Q  A  Q  E  P  D  Y  F  H  Y  L  L  S  A  I  W  K  S  F  A  E  D  K  V  G  E  I  V  G  N  G  I  K  S  G  K  I  V  S  Q  D  A  L  K  V  T  T  Q  V  L  Q  N  G  S  G  N  I  G  G  K  K  R  R  E  D  V  A  T  I  V  S  A  P  R  T  H  V  Q  G  N  S  P  Q  D  Y  F  P  S  Q  A  P  Q  Y  S  V  P  Y  S  P  Y  H  V  F  N  A  Q  P  I  A  P  R  S  Y  P  Q   </second_frame>
            <third_frame>   K  I  F  V  N  M  L  S  D  G  G  N  K  L  L  E  L  N  Q  R  R  R  S  Q  R  *  S  T  F  F  S  K  R  K  N  L  I  T  F  T  I  C  F  L  P  Y  G  S  H  S  L  K  I  R  *  G  K  *  W  E  M  A  S  S  L  E  R  L  *  V  K  M  P  *  K  S  Q  H  K  C  F  K  M  V  L  E  I  L  E  G  R  R  E  G  R  M  W  P  L  L  Y  Q  R  L  G  L  M  F  K  V  I  P  H  K  T  I  F  L  P  K  L  H  N  I  L  F  H  T  V  H  I  M  F  L  M  H  N  Q  L  H  P  V  L  I  H  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86731" stop="86294"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENFREYAIRWREQAARVKPTTKESEMINIFLQAQEPDYFHYLLSAIWKSFAEDKVGEIVGNGIKSGKIVSQDALKVTTQVLQNGSGNIGGKKRREDVATIVSAPRTHVQGNSPQDYFPSQAPQYSVPYSPYHVFNAQPIAPRSYPQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="87359" PGL_stop="86945"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87359" e_stop="86945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="87359" e_stop="86945" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87359" stop="86945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGATAAGTAATCCACTCTTTGTGTCAATTGCCCCGACTAACAGCATCCGGCAGCCAACGATGGTGCCCAAATCCAACAGCGATCCTCTAACCAAAGTTCGGCATGATCAGAGTTACACTCTTGAAGAGGCCATTAAAATTCCAAGCTCTCATCCCCACATTCATCAACATAGTTCCCCTGTCGAAATTGAGAAGATGGTCAAGAATGAGGAACGTGAAGAAATGACTAAGAAAATGAAGAATTTGGAACAGAGTATAAGAGATATGCAAGGACTAGGAGGCCACAAAGGCATCTCGTTCAGTGACTTGTGTATGTTTTCTCACGTCCATTTGCCTGCTGGTTTTAAAACTCCAAAGTTTGAAAAATACGATGGTCACGGAGACCCCATAGCTCATCTAAAGATATATTGCAAC</gDNA_template>
            <first_frame> C  D  K  *  S  T  L  C  V  N  C  P  D  *  Q  H  P  A  A  N  D  G  A  Q  I  Q  Q  R  S  S  N  Q  S  S  A  *  S  E  L  H  S  *  R  G  H  *  N  S  K  L  S  S  P  H  S  S  T  *  F  P  C  R  N  *  E  D  G  Q  E  *  G  T  *  R  N  D  *  E  N  E  E  F  G  T  E  Y  K  R  Y  A  R  T  R  R  P  Q  R  H  L  V  Q  *  L  V  Y  V  F  S  R  P  F  A  C  W  F  *  N  S  K  V  *  K  I  R  W  S  R  R  P  H  S  S  S  K  D  I  L  Q  </first_frame>
            <second_frame>  V  I  S  N  P  L  F  V  S  I  A  P  T  N  S  I  R  Q  P  T  M  V  P  K  S  N  S  D  P  L  T  K  V  R  H  D  Q  S  Y  T  L  E  E  A  I  K  I  P  S  S  H  P  H  I  H  Q  H  S  S  P  V  E  I  E  K  M  V  K  N  E  E  R  E  E  M  T  K  K  M  K  N  L  E  Q  S  I  R  D  M  Q  G  L  G  G  H  K  G  I  S  F  S  D  L  C  M  F  S  H  V  H  L  P  A  G  F  K  T  P  K  F  E  K  Y  D  G  H  G  D  P  I  A  H  L  K  I  Y  C  N </second_frame>
            <third_frame>   *  *  V  I  H  S  L  C  Q  L  P  R  L  T  A  S  G  S  Q  R  W  C  P  N  P  T  A  I  L  *  P  K  F  G  M  I  R  V  T  L  L  K  R  P  L  K  F  Q  A  L  I  P  T  F  I  N  I  V  P  L  S  K  L  R  R  W  S  R  M  R  N  V  K  K  *  L  R  K  *  R  I  W  N  R  V  *  E  I  C  K  D  *  E  A  T  K  A  S  R  S  V  T  C  V  C  F  L  T  S  I  C  L  L  V  L  K  L  Q  S  L  K  N  T  M  V  T  E  T  P  *  L  I  *  R  Y  I  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87358" stop="86945"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VISNPLFVSIAPTNSIRQPTMVPKSNSDPLTKVRHDQSYTLEEAIKIPSSHPHIHQHSSPVEIEKMVKNEEREEMTKKMKNLEQSIRDMQGLGGHKGISFSDLCMFSHVHLPAGFKTPKFEKYDGHGDPIAHLKIYCN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="98585" PGL_stop="98761"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98585" e_stop="98761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="98585" e_stop="98761" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98585" stop="98761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACATACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  Y  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  H  I  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0020F17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="100066" PGL_stop="100778"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100066" e_stop="100778"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="100066" e_stop="100778" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100066" stop="100778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCATGTGCCCTAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTAATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTATAGATTCGTAATTCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCAACCTTCTTCTTTACAAACAGAACCGGAGCACCCCAAGGAGATGCATTTGGTCTAATAAAGCCTTTGCTTAGCAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGG</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  Y  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  *  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  F  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  C  S  R  G  I  R  K  T  K  R  H  H  Y  R  F  V  I  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  N  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  I  W  S  N  K  A  F  A  *  Q  L  L  K  L  C  L  *  L  S  *  L  R   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  M  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  M  *  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  I  D  S  *  F  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  T  F  F  F  T  N  R  T  G  A  P  Q  G  D  A  F  G  L  I  K  P  L  L  S  N  S  *  S  C  A  F  N  S  L  N  S  A  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  L  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  C  A  L  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  V  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  C  N  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  M  Q  Q  G  H  S  *  D  Q  K  T  S  L  *  I  R  N  S  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  Q  P  S  S  L  Q  T  E  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  A  T  L  E  V  V  P  L  T  L  L  T  P  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100231" stop="100569"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKFFLPQHFQYHSQMLLMFLLTFRVYQYVINKYDHKEIQIWLKNPVHQTHECSRGIRKTKRHHYRFVIPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="101589" PGL_stop="101304"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101589" e_stop="101304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="101589" e_stop="101304" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101589" stop="101304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGGCCATCTTCACTCTATTTCGCGGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAATATCGGCAAAACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  G  H  L  H  S  I  S  R  M  V  R  T  R  A  T  T  A  P  T  P  I  S  A  K  Q  E  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  A  I  F  T  L  F  R  G  W  L  E  L  E  Q  R  L  R  Q  H  Q  Y  R  Q  N  K  K  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  W  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  C  A  N  T  N  I  G  K  T  R  S  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101540" stop="101304"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFFLSFVLLLGSNWYLGDTNWYLAIFTLFRGWLELEQRLRQHQYRQNKKRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="102089" PGL_stop="102837"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102089" e_stop="102470"/>
            <exon e_start="102702" e_stop="102837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.241" acc_prob="0.000" e_score="0.903"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="102089" e_stop="102470" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.241" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102471" i_stop="102701" i_length="231"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="102702" e_stop="102837" e_length="136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102089" stop="102470"/>
              <exon start="102702" stop="102837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335078" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTATATATTAGATAATATCATAAAATCAATTAATATCCTTAGCATGCAGCATTTACAATTATCATAACCCTTGGTTACAACACCAAGCTCATCAATGAGGACTCACGCCTCCTCATCATACTCATTTGGGAATTAGGTTCATTAGATTGAATATATTAACATCTTTCAAGATTCATTATCTTTATTCCTCTCGTGTCGGTACGTGACACTCCGCTTCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGTCACTCTGATCCTTATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTG : GTGTCGGAACGTGACACTCCGATCCTCATATACAATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGG</gDNA_template>
            <first_frame> S  I  Y  *  I  I  S  *  N  Q  L  I  S  L  A  C  S  I  Y  N  Y  H  N  P  W  L  Q  H  Q  A  H  Q  *  G  L  T  P  P  H  H  T  H  L  G  I  R  F  I  R  L  N  I  L  T  S  F  K  I  H  Y  L  Y  S  S  R  V  G  T  *  H  S  A  S  H  I  L  S  W  Y  R  N  V  A  P  D  P  Y  S  I  L  V  P  E  R  G  T  R  S  I  Y  Y  P  G  V  G  T  C  H  S  D  P  Y  S  I  L  V  P  E  R  G  T  R  S  I  F  Y  P   : G  V  G  T  *  H  S  D  P  H  I  Q  S  W  Y  R  N  V  A  P  D  P  L  I  S  L  L  S  F  I  K  P  S  F  I  P  R  H  H  H  *  Q  S  R  L   </first_frame>
            <second_frame>  V  Y  I  R  *  Y  H  K  I  N  *  Y  P  *  H  A  A  F  T  I  I  I  T  L  G  Y  N  T  K  L  I  N  E  D  S  R  L  L  I  I  L  I  W  E  L  G  S  L  D  *  I  Y  *  H  L  S  R  F  I  I  F  I  P  L  V  S  V  R  D  T  P  L  L  I  Y  Y  P  G  T  G  T  W  H  P  I  H  I  L  S  W  Y  R  N  V  A  P  D  P  Y  T  I  L  V  S  E  R  V  T  L  I  L  I  L  S  W  Y  R  N  V  A  P  D  P  Y  S  I  L  :  V  S  E  R  D  T  P  I  L  I  Y  N  P  G  T  G  T  W  H  P  I  P  *  S  H  Y  F  R  S  S  S  L  L  L  Y  Q  G  I  I  I  N  K  V  D  *  </second_frame>
            <third_frame>   Y  I  L  D  N  I  I  K  S  I  N  I  L  S  M  Q  H  L  Q  L  S  *  P  L  V  T  T  P  S  S  S  M  R  T  H  A  S  S  S  Y  S  F  G  N  *  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  S  C  R  Y  V  T  L  R  F  S  Y  T  I  L  V  P  E  R  G  T  R  S  I  F  Y  P  G  T  G  T  W  H  P  I  H  I  L  S  W  C  R  N  V  S  L  *  S  L  F  Y  P  G  T  G  T  W  H  P  I  H  I  L  S  W :   C  R  N  V  T  L  R  S  S  Y  T  I  L  V  P  E  R  G  T  R  S  P  N  L  T  T  F  V  H  Q  A  F  F  Y  T  K  A  S  S  L  T  K  *  I  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102249" stop="102470"/>
                    <exon start="102702" stop="102770"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLSRFIIFIPLVSVRDTPLLIYYPGTGTWHPIHILSWYRNVAPDPYTILVSERVTLILILSWYRNVAPDPYSILVSERDTPILIYNPGTGTWHPIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="112738" PGL_stop="112066"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112738" e_stop="112066"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="112738" e_stop="112066" e_length="673"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112738" stop="112066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331099" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGCAAATATGTCAATTGAACGAGTTAGGCGAGCAGTGACATATATCAGGCAATCTCTTGCTTGGAAGTAAAACTTTCAAGAATGTTGTGAAGATGAAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCAATAAGATAGAATTCCACCTACATGATGTTGAGCAAGGTTATTGAATATGAAAGGGCAATTGTAGAGTACGCCGATCGTGATATTGGCTTGTCACTATATCTTAAGTTTGTTGATAAAAATTCTACAGGTACACTTTTGAATAGTGACTGGGAGGGCGTAAAGAGAATTACAAAATTTCTTGAAATGTTTTTTAATCTTACTTTGAAGATATCTGGTTCACGATATGTTACATATAATCTTTATTTTCTTGAAAGTTGTCAAGTTGGTGTTTACTTGAATCAGTTGATATCAAATGAAGATCATGTTTTGGATAAAATGACAGAAAATATGAAGGAGAAATTTGACAACTATTGGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGCGTTTTGGATCCTCGTCACAAATTTAGAACTCTTGGCTTTGAACTTAAGAAGATGTTTGGAGAAAAAGGGGCTGCTATAGAAAATGGTGTGCGAACGTACATGGAAGCTTTGTTTAATGAGTACACAAAGCCCATTTCAAAT</gDNA_template>
            <first_frame> R  S  K  Y  V  N  *  T  S  *  A  S  S  D  I  Y  Q  A  I  S  C  L  E  V  K  L  S  R  M  L  *  R  *  K  S  C  *  K  V  F  M  L  G  C  S  N  K  I  E  F  H  L  H  D  V  E  Q  G  Y  *  I  *  K  G  N  C  R  V  R  R  S  *  Y  W  L  V  T  I  S  *  V  C  *  *  K  F  Y  R  Y  T  F  E  *  *  L  G  G  R  K  E  N  Y  K  I  S  *  N  V  F  *  S  Y  F  E  D  I  W  F  T  I  C  Y  I  *  S  L  F  S  *  K  L  S  S  W  C  L  L  E  S  V  D  I  K  *  R  S  C  F  G  *  N  D  R  K  Y  E  G  E  I  *  Q  L  L  G  *  C  *  K  N  E  *  D  G  F  H  T  M  R  F  G  S  S  S  Q  I  *  N  S  W  L  *  T  *  E  D  V  W  R  K  R  G  C  Y  R  K  W  C  A  N  V  H  G  S  F  V  *  *  V  H  K  A  H  F  K  </first_frame>
            <second_frame>  E  A  N  M  S  I  E  R  V  R  R  A  V  T  Y  I  R  Q  S  L  A  W  K  *  N  F  Q  E  C  C  E  D  E  N  L  A  K  K  S  L  C  L  D  V  P  I  R  *  N  S  T  Y  M  M  L  S  K  V  I  E  Y  E  R  A  I  V  E  Y  A  D  R  D  I  G  L  S  L  Y  L  K  F  V  D  K  N  S  T  G  T  L  L  N  S  D  W  E  G  V  K  R  I  T  K  F  L  E  M  F  F  N  L  T  L  K  I  S  G  S  R  Y  V  T  Y  N  L  Y  F  L  E  S  C  Q  V  G  V  Y  L  N  Q  L  I  S  N  E  D  H  V  L  D  K  M  T  E  N  M  K  E  K  F  D  N  Y  W  G  D  A  E  K  M  N  K  M  V  F  I  P  C  V  L  D  P  R  H  K  F  R  T  L  G  F  E  L  K  K  M  F  G  E  K  G  A  A  I  E  N  G  V  R  T  Y  M  E  A  L  F  N  E  Y  T  K  P  I  S  N </second_frame>
            <third_frame>   K  Q  I  C  Q  L  N  E  L  G  E  Q  *  H  I  S  G  N  L  L  L  G  S  K  T  F  K  N  V  V  K  M  K  I  L  L  K  S  L  Y  A  W  M  F  Q  *  D  R  I  P  P  T  *  C  *  A  R  L  L  N  M  K  G  Q  L  *  S  T  P  I  V  I  L  A  C  H  Y  I  L  S  L  L  I  K  I  L  Q  V  H  F  *  I  V  T  G  R  A  *  R  E  L  Q  N  F  L  K  C  F  L  I  L  L  *  R  Y  L  V  H  D  M  L  H  I  I  F  I  F  L  K  V  V  K  L  V  F  T  *  I  S  *  Y  Q  M  K  I  M  F  W  I  K  *  Q  K  I  *  R  R  N  L  T  T  I  G  V  M  L  K  K  *  I  R  W  F  S  Y  H  A  F  W  I  L  V  T  N  L  E  L  L  A  L  N  L  R  R  C  L  E  K  K  G  L  L  *  K  M  V  C  E  R  T  W  K  L  C  L  M  S  T  Q  S  P  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112593" stop="112066"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSTYMMLSKVIEYERAIVEYADRDIGLSLYLKFVDKNSTGTLLNSDWEGVKRITKFLEMFFNLTLKISGSRYVTYNLYFLESCQVGVYLNQLISNEDHVLDKMTENMKEKFDNYWGDAEKMNKMVFIPCVLDPRHKFRTLGFELKKMFGEKGAAIENGVRTYMEALFNEYTKPISN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 84 chains have been computed
$ 
$ memory statistics:
$ 30672 bytes spliced alignments in total
$ 14 spliced alignments have been stored
$ 2190 bytes was the average size of a spliced alignment
$ 20368 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1566 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 111 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-20 20:30:38
-->
