<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-05 08:20:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205772" ref_strand="+" ref_description="SGN-E205772 [cLEC-20-A1]">
      <seq>aacaatttgttaatttaaatccattagccactcttgctcatcttttaagtatcttgttggattttatttgccctgatttcttaccataaataggttttccttttaggaaaaggttttgaattgactaatccttttcttgtaggaaaaggtttaggactctataaatagatgaatattccttttaacttaatcagcattcacaatgtactcttacaggctttgagagttttggttagagggagaatctgtgggtcacaagcttgatatgttatcacttgtgtgaacctcccatgtattctgagtgaattggttgaggttgattctctctgtattttgtactcttatatttatagtggattgctcatctcctttgtggacgtaggttgattgaccgaaccacgttaaatctttgtgtcttttgatatatttctcgttgtcttcttactcgtggtctttcgaggtttgtattgctagcttccgcgtttacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="55055" stop="54039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54781" g_stop="54339" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="490" r_length="440" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E205772" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54781" e_stop="54339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGTTGGGTTTTATTTGCCCTAAATTTCTTACCATAAATAGGTTTTCCTTGTAGGAAAAAGGTTTTGGATTGACTAATCCTTTTCTTGTAGGAAAAGGTTTAGGATTCCATAAATAGAGACATGTTCCTTCTAATTTAATTAGCATTCACAATGTAGTCTTAAGGGCTTTGAGAGTTTTGGTTAGAGGGAGAATTTGTGGGTCACAAGATTGATATGTTATCACTTGTGTGAACCTCCCATGTATTCTGAGTGAATTTGGTTGAGGTTGTTTCCCTCTGTA-TTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTCTGTGGACGTAGGTCGATTGACCGAACCACGTTAAATCTATGTGTCTTTTGGTATATTTCTCGTTGTCTTCTTACTCGTGATCTTTTGAGGTTTGCTTTGCTAGCCTTCCGCGTTTACACC</genome_strand>
        <mrna_strand>ATCTTGTTGGATTTTATTTGCCCT-GATTTCTTACCATAAATAGGTTTTCCTTTTAGG-AAAAGGTTTTGAATTGACTAATCCTTTTCTTGTAGGAAAAGGTTTAGGACTCTATAAATAGATGAATATTCCTTTTAACTTAATCAGCATTCACAATGTACTCTTACAGGCTTTGAGAGTTTTGGTTAGAGGGAGAATCTGTGGGTCACAAGCTTGATATGTTATCACTTGTGTGAACCTCCCATGTATTCTGAGTGAA-TTGGTTGAGGTTGATTCTCTCTGTATTTTGTACTCTTATATTTATAGTGGATTGCTCATCTCCTTTGTGGACGTAGGTTGATTGACCGAACCACGTTAAATCTTTGTGTCTTTTGATATATTTCTCGTTGTCTTCTTACTCGTGGTCTTTCGAGGTTTGTATTGCTAG-CTTCCGCGTTTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374440" ref_strand="+" ref_description="SGN-E374440 [TUS-38-H6](-)">
      <seq>tttgtcagacacttatattcggcttcaaagcagatcagttctgcagtgtctccagatcaaaacaccaccgcttttaaggaagtggcaattattcgtcatccccgtgtgggggaatatgcttttggttttataacatcatcagttacccttcagacagaagaaggggatgaagaattgtatagtgtttttgtccctacaaaccatttgtacattggtgatgtactcctggttaacgccaatgatgtcataaaaccaaacatgtccatccgtgaaggcattgagatcattgtttccggaggaatgaccatgcctcaaaggatctctcatgtggcaagagttgcgcgacaaagtgaaagaattccactgaacagaattaagtaaaaatagtgatgaacatgacaatgtaggacggtttgtaattagtcaaggagggaaagaaaaatcatatatacattgctgtaatttttcggatcgatccgatatatgttgtattatgtctctgttctgaagatacagtaaagttctcgttgaaggtttaaattcatgtccatctcaggcaatcaaacagatatatccagttatcatgttgtcccaacatgggtgaatgtaaaaatattagtaaatatggacaatttttttttataaattaaaaatttatttttgtttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="69737" stop="67310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69437" g_stop="69383" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69382" i_stop="68783" i_length="600">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68782" g_stop="68685" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="153" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68684" i_stop="68378" i_length="307">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68377" g_stop="68251" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="280" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68250" i_stop="67997" i_length="254">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67996" g_stop="67599" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="678" r_length="398" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E374440" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69437" e_stop="69383"/>
          <exon e_start="68782" e_stop="68685"/>
          <exon e_start="68377" e_stop="68251"/>
          <exon e_start="67996" e_stop="67599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAGGTAAAGTTACATTTTTCTTCTTCTGAAGAGCACAATGATGAAATGAGACTTACCTTCCATTTGTTAAGGGGAAAGGCAAGGCAAGGAGTGGTGCACTTATCTAATTCACTTCTGGATCCATTTCTTGCTACTATCATCCTGAGATGGAAATGGGAAAGGAGAAGAAACAAGGAGACCGTGTGTGGGATGGGGTGGGGGTGGGGGGTGGGGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCATTGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTACTTGTTCTTGATACTTACTTTTATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAGGTATTTGTTCGCTGTAGCAAGTTTTCCCTTATTACTGCAATAGGGAAAAAACCATCCTTCTTATTATTTTCAGAAATGCATATTTTCTTTTGCTGCTGTGCAGTGCTGAATGTTCTTTTGATGTGCATAAGTTCTTTCTTGAACTACTGACATTTTTCAAAGATAAGCTCCTCATATTCTCTCCGGTGACTTGATAGAGATGAAAGACGAGAAGTAGAAAGAACAACAATAATAGAACACAGAAAAGAGCATTTAATAATATTGTTGGCTGATATATGTACATTGACACATTATTTCTGGATGGCAGACAGAAGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACTCCTGGTTAACGCCAATGATGTCATAAAACCAAACATGTCCATCCGTGAAGGCATTGGTATGTCTCTGGTTTTCTGGTAACTCGTCTTTAATATGTCACTCCTTGTTTTGTACTAGTAGCTCGGTTGACTGGTTGAAGCATGCATCTTAGTTGATGGTGTCTTTAGTTTACTGAGTTATCCAACTTTCTAAAACTAACCAACATAAGCTTATCCATGGTAAGATCTATCTCCAAATGCATCAAATGAATTTCGGGCATGTCTACAGAACTGTTTTCAAGTGTTTCTAACAGTGAAGCCAAAAAAAATGCAGAGATCATTGTTTCCGGAGGAATGACCATGCCTCAAAGGATCTCTCATGTGGCAAGAGTTGCGCGACAAAGTGAAAGAATTCCACTGAACAGAATTAAGTAAAAATAGTGATGAACATGACAATGTAGGACGGTTTGTAATTAGTCAAGGAGGGAAAGAAAAATCATATATACATTGCTGTAATTTTTCGGATCGATCCGATATATGTTGTATTATGTCTCTGTTCTGAAGATACAGTAAAGTTCTCGTTGAAGGTTTAAATTCATGTCCATCTCAGGCAATCAAACAGATATATCCAGTTATCATGTTGTCCCAACATGGGTGAATGTAAAAATATTAGTAAATATGGACAATTTTTTTTTATAAATTAAAAATTTATTTTTGTTTAGCATGTATCTA</genome_strand>
        <mrna_strand>TTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAG...................................................................................................................................................................................................................................................................................................................ACAGAAGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACTCCTGGTTAACGCCAATGATGTCATAAAACCAAACATGTCCATCCGTGAAGGCATTG..............................................................................................................................................................................................................................................................AGATCATTGTTTCCGGAGGAATGACCATGCCTCAAAGGATCTCTCATGTGGCAAGAGTTGCGCGACAAAGTGAAAGAATTCCACTGAACAGAATTAAGTAAAAATAGTGATGAACATGACAATGTAGGACGGTTTGTAATTAGTCAAGGAGGGAAAGAAAAATCATATATACATTGCTGTAATTTTTCGGATCGATCCGATATATGTTGTATTATGTCTCTGTTCTGAAGATACAGTAAAGTTCTCGTTGAAGGTTTAAATTCATGTCCATCTCAGGCAATCAAACAGATATATCCAGTTATCATGTTGTCCCAACATGGGTGAATGTAAAAATATTAGTAAATATGGACAATTTTTTTTTATAAATTAAAAATTTATTTTTGTTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398056" ref_strand="+" ref_description="SGN-E398056 [TUS-38-G6](-)">
      <seq>gagggaaagaaaaatcttatattcattgcggtaatttttcggatcgatccgatatatgttgtattatgtctttgttctgaagatacagtaaagttctcgttgaaggtttaaattcaagtccatttcaggcaatcaaacagatatatccagttatcatgttgtcccaacatgggtgaatgtaaaaatattagtaaatatggacaatttttttttataaattaaaaatttatttttgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="68148" stop="67310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67848" g_stop="67599" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E398056" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67848" e_stop="67599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAAAGAAAAATCATATATACATTGCTGTAATTTTTCGGATCGATCCGATATATGTTGTATTATGTCTCTGTTCTGAAGATACAGTAAAGTTCTCGTTGAAGGTTTAAATTCATGTCCATCTCAGGCAATCAAACAGATATATCCAGTTATCATGTTGTCCCAACATGGGTGAATGTAAAAATATTAGTAAATATGGACAATTTTTTTTTATAAATTAAAAATTTATTTTTGTTTAGCATGTATCTA</genome_strand>
        <mrna_strand>GAGGGAAAGAAAAATCTTATATTCATTGCGGTAATTTTTCGGATCGATCCGATATATGTTGTATTATGTCTTTGTTCTGAAGATACAGTAAAGTTCTCGTTGAAGGTTTAAATTCAAGTCCATTTCAGGCAATCAAACAGATATATCCAGTTATCATGTTGTCCCAACATGGGTGAATGTAAAAATATTAGTAAATATGGACAATTTTTTTTTATAAATTAAAAATTTATTTTTGTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351258" ref_strand="+" ref_description="SGN-E351258 [cTOS-6-H7]">
      <seq>agttacccttcagacagaagaaggggatgaagaattgtatagtgtttttgtccctacaaaccatttgtacattggtgatgtactcctggttaacgccaatgatgtcataaaaccaaacatgtccatccgtgaaggcattgagatcattgtttccggaggaatgaccatgcctcaaaggatctctcatgtggcaagagttgcgcgacaaagtgaaagaattccactgaacagaattaagtaaaaatagtgatgaacatgacaatgtaggacggtttgtaattagtcaaggagggaaagaaaaatcatatatacattgctgtaatttttcggatcgatccgatatatgttgtattatgtctctgttctgaagatacagtaaagttctcgttgaaggtttaaattcatgtccatctcaggcaatcaaacagatatatccagttatcatgttgtcccaacatgggtgaatgtaaaaatattagtaaatatggacaatttttttttataaattaaaaatttatttttgtttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="68680" stop="67310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68377" g_stop="68251" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="140" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68250" i_stop="67997" i_length="254">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67996" g_stop="67602" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="535" r_length="395" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E351258" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68377" e_stop="68251"/>
          <exon e_start="67996" e_stop="67602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAAGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACTCCTGGTTAACGCCAATGATGTCATAAAACCAAACATGTCCATCCGTGAAGGCATTGGTATGTCTCTGGTTTTCTGGTAACTCGTCTTTAATATGTCACTCCTTGTTTTGTACTAGTAGCTCGGTTGACTGGTTGAAGCATGCATCTTAGTTGATGGTGTCTTTAGTTTACTGAGTTATCCAACTTTCTAAAACTAACCAACATAAGCTTATCCATGGTAAGATCTATCTCCAAATGCATCAAATGAATTTCGGGCATGTCTACAGAACTGTTTTCAAGTGTTTCTAACAGTGAAGCCAAAAAAAATGCAGAGATCATTGTTTCCGGAGGAATGACCATGCCTCAAAGGATCTCTCATGTGGCAAGAGTTGCGCGACAAAGTGAAAGAATTCCACTGAACAGAATTAAGTAAAAATAGTGATGAACATGACAATGTAGGACGGTTTGTAATTAGTCAAGGAGGGAAAGAAAAATCATATATACATTGCTGTAATTTTTCGGATCGATCCGATATATGTTGTATTATGTCTCTGTTCTGAAGATACAGTAAAGTTCTCGTTGAAGGTTTAAATTCATGTCCATCTCAGGCAATCAAACAGATATATCCAGTTATCATGTTGTCCCAACATGGGTGAATGTAAAAATATTAGTAAATATGGACAATTTTTTTTTATAAATTAAAAATTTATTTTTGTTTAGCATGTAT</genome_strand>
        <mrna_strand>ACAGAAGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACTCCTGGTTAACGCCAATGATGTCATAAAACCAAACATGTCCATCCGTGAAGGCATTG..............................................................................................................................................................................................................................................................AGATCATTGTTTCCGGAGGAATGACCATGCCTCAAAGGATCTCTCATGTGGCAAGAGTTGCGCGACAAAGTGAAAGAATTCCACTGAACAGAATTAAGTAAAAATAGTGATGAACATGACAATGTAGGACGGTTTGTAATTAGTCAAGGAGGGAAAGAAAAATCATATATACATTGCTGTAATTTTTCGGATCGATCCGATATATGTTGTATTATGTCTCTGTTCTGAAGATACAGTAAAGTTCTCGTTGAAGGTTTAAATTCATGTCCATCTCAGGCAATCAAACAGATATATCCAGTTATCATGTTGTCCCAACATGGGTGAATGTAAAAATATTAGTAAATATGGACAATTTTTTTTTATAAATTAAAAATTTATTTTTGTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708843" ref_strand="+" ref_description="SGN-E708843 [FA36DF12]">
      <seq>cgcttgatctagagacaaagccctaaaactaaaaagcaaaaatggcggaagagaaggatcccacttctataccactaagtcaagcttctgaagatcctgaagaccccatcaaatctactcctgcttcacccaattcttctacccgcaaggcttgctgttattttcttcaaagttgggtatctaagaagtttatgactggatgtgtggttctcttccctgtggcggttacattctttgtgacatggtggtttattcagtttgttgatggtttcttcagtccactatatgaacaacttggcattgacatatttggactaggatttgtcacatctcttgtttttgtattcttagttggagtttttgtttcatcctggctgggtgctactgttttttggattggggaatggattattaaacgaatgccatttgtcagacacttatattcggcttcaaagcagatcagttctgcagtgtctccagatcaaaacaccaccgcttttaaggaagtggcaattattcgtcatccccgtgtgggggaatatgcttttggttttataacatcatcagttacccttcagacagaagaaggggatgaagaattgtatagtgtttttgtccctacaaaccatttgtacattggtgatgtactcctggttaacgccaatgatgtcataaaaccaaacatgtccatccgtgaaggcattgagatcattgtttccggaggaatgaccatgcctncaaggatctctcatgtggcaagagttgcgcgacaaagtgaaagaattccactgaacagaattaagtaaaaatagtgatgaacatgacaatgtaggacggtttgtaattagtcaagggagggaaagaaaaatcatatatacattgctgtaaatttttcggatcgaaccgatatatgttggaattatgtccccggtccggagatacagttaaagttctcgttggaggtttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="72814" stop="67437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72520" g_stop="72371" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70730" g_stop="70678" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="202" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70677" i_stop="70589" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.452" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70588" g_stop="70479" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="312" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70478" i_stop="69551" i_length="928">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69550" g_stop="69383" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="480" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69382" i_stop="68783" i_length="600">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68782" g_stop="68685" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="578" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68684" i_stop="68378" i_length="307">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68377" g_stop="68251" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="705" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68250" i_stop="67997" i_length="254">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67996" g_stop="67744" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="962" r_length="257" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="967" polyA_stop="982"/>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E708843" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>959</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72520" e_stop="72371"/>
          <exon e_start="70730" e_stop="70678"/>
          <exon e_start="70588" e_stop="70479"/>
          <exon e_start="69550" e_stop="69383"/>
          <exon e_start="68782" e_stop="68685"/>
          <exon e_start="68377" e_stop="68251"/>
          <exon e_start="67996" e_stop="67744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAGGTCAGTTTTTCTTTCTAAAAGCTGTCTGATTTTTTGAGGTTTTAGAGGAAATTTACTCTTATCCTTGAAGCTAACAGAGATTATGAAGAAAAGGGGAGATGGGTTTTTGTGTTTGGTACAGGAAGTGTATTTTCTTGATTTTGAAAATATGGGAAATGGAGAAGGGATTGGAAAGAATGGCGAAAATGGGGAAATGGATAGTTGTGTTTGCCGCAGGACATGGACAAACTTGTTGAAAAGTATTGAGTTTTCGATATTTTCTTTTTTGGGTTCAAAGGGTAGTGTATATATTTACAATTTATGAATTACCAATTCGAATAAATGCATTTCTCGTTTCCATAGTTTTTGAAGTTGAAGCTTGAAAAATTGAGTTGTTAAAGTTGTGTTTGGACTTGCATTTTACTTGGGAAAAAATAGGATTTTTGTGAGTGGAAGTGAAATTTCTTAATTTCTACCAATTGCAAATATTTGAAAGATAAGAATTTCATGGCCAAATAGATATTTGGGGATAAATTGTCAAAATCTGATCCAAAATCTATGCTAAGTGTGCGGAGAATATTGGTTTTGAAGTAGACACAATTGATTCTTAAAATGAGGTTTTGATGTTTTTTCGTCTTATATACCTGCTCATGTACAATGTGGTTTGTATTTCTTTCACTTGGGTTGGGAGTTATCAAATAGTTAGAGTCAATTTATGCACAAAAAAGAAGGTACATTCTAATAATCTGAATGATGGGTTAATTTTGATATGATCAAAGTCACAGATTTTGTGCATCCTTATAAGAAAAAAAAGGTCATAGATTTTGTGTATCCTTGTAAAAGAAAAAGGTCAATAGATTTTGTGCATCTTATCTACTTATGGGATGTAGTTGGTAATTTGGGTTGGGGTCAAACTTATTAATTTAGCATCAGCCTATGCTAACATACATTCTTGCGTTTTGGTTTTCAAATTGATGTGATAGAGAGATATTATTGTGATTAACTATGTTGCTCGAACTTTTCAAATCCTTCAAATTTCAGTGCTTTTTTTGAGGATCCGACACGGTTGCGCAACATTTTTGGAGAGTCTAAGCAAAATAAGCTACCTAAATCTGTTTGATTTTATATTGGAAGAAAGTTATTTGAACAAGTTTTTAAAAAGAGATGAAGAGTTTTAAAGACCGTTCAACAAAACTTGAATCCGAAAAAGAAGTTCAAACTAGTAAAGAAGTGGTCCAAGTCAGAATAAATGATTTAAGAAAATCCAGGTTCTTTGGGGAGTAAAACAGTATATTTACTTGTCCTTTTCCGACCCAATGTACTAATATATATTCTACATATACTTATACGAAAAGAATCTTCAAATTGGAAAACAAGTTGACACATGAGAACAAATAATTTAGAAAATCCAGGTTCTCTAGAGGGGAACTGTTTGATAGACACCTGAGCTGTATATTCAATCTCGAGTCCTTTTAATGCCAATTGTACTCCAATATATTCAGTCTGGAATTTACTTTGTTTTTTGTGCATGTATAGAGAAGCTCCTATGAGAAAAGGACATATTTAAGCACTCCTCTATATTTAAGCATTCCTCTCTATACATATTCCTGTAGGCAGTTTACTTGTATATATCTTAATTGTTTTTCATACCTCTTTTTCAGGCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATGGTAATTTCTTATATCTATGTTGCGTTACCAATTTTAATAGGTTTTGGCTAACTTTGAATCCGTAACAACTCCAAAATTTGAAATTGCAGTGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTGGTAAGTCCAATTTTCCTACATTTTGATAGCTGCAGTTAGTTTCCTGTATTGGTTTATCCTGCTTCTTGATACTTAGTAGTTCAATACCCTGCATATTCAAGGCTCACCTCGTATTTTCATTTTCAGATATTTCATTATCCTGCATCACTGCAACTTCACCAAATAATATTGCAAATTGTTCTTTAAAATTGAGCTTATCAGCTGCATATATCTCTTTGTGAACATGTAAAAAGTTACTTTACATGTTGAGGAGAAAAGTAATGAAATGCATTATAAACTTTCTTTACTTACTGTAGTGAAGAGTCGGAGCATTATGAGAAAGAATAAGTTTTGGTGATTATATTTTCTTGTCTTGTCTTCATGATGGAAGTACAATTTTGTTTCTGGTATCTGAAGATTTCAGTCAGGGGCTTCAAAAAGGATATTGCTTTCAGCATACAAAATTACAACCAACTATGTCCAGCCATATAAGTCTAAGATGCTCGTGGTTGACCTGGCATAACTACAAATAACTAGAAAAATAGCCATTAATTGTGCTTGCTTCTTTTAACATTGTGTTTAGGGTTTAGCCTTCTCTGACTAACTCGTATGAATTGCTTTGCTCTTATAAATGTGATGTTGATATCAGTGTATATGTAATAATACACTTCTCTTTTCCTGAGTTGTAAATGCCTCTCACGTGTGCGGAAGCCATTGATGTCTATTCTACATGATCAAATATCTAATATTCATTAAGTGTAGAACTTCAGCTGGTTTTTGACTGTCCATTATGTTTTGTGTTATCTTTCTATGTTTCATGCATGATTGATAAATCTCATGTTCCATGCATGATTTATGTGTTGTCCACCTTCCGATCTGTATTAAAAGTTGTTATCTATTGTATATTCCCCATATATCCTGATCTTTCGGACATTTGTTGTTGGTGCAGGACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAGGTAAAGTTACATTTTTCTTCTTCTGAAGAGCACAATGATGAAATGAGACTTACCTTCCATTTGTTAAGGGGAAAGGCAAGGCAAGGAGTGGTGCACTTATCTAATTCACTTCTGGATCCATTTCTTGCTACTATCATCCTGAGATGGAAATGGGAAAGGAGAAGAAACAAGGAGACCGTGTGTGGGATGGGGTGGGGGTGGGGGGTGGGGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCATTGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTACTTGTTCTTGATACTTACTTTTATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAGGTATTTGTTCGCTGTAGCAAGTTTTCCCTTATTACTGCAATAGGGAAAAAACCATCCTTCTTATTATTTTCAGAAATGCATATTTTCTTTTGCTGCTGTGCAGTGCTGAATGTTCTTTTGATGTGCATAAGTTCTTTCTTGAACTACTGACATTTTTCAAAGATAAGCTCCTCATATTCTCTCCGGTGACTTGATAGAGATGAAAGACGAGAAGTAGAAAGAACAACAATAATAGAACACAGAAAAGAGCATTTAATAATATTGTTGGCTGATATATGTACATTGACACATTATTTCTGGATGGCAGACAGAAGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACTCCTGGTTAACGCCAATGATGTCATAAAACCAAACATGTCCATCCGTGAAGGCATTGGTATGTCTCTGGTTTTCTGGTAACTCGTCTTTAATATGTCACTCCTTGTTTTGTACTAGTAGCTCGGTTGACTGGTTGAAGCATGCATCTTAGTTGATGGTGTCTTTAGTTTACTGAGTTATCCAACTTTCTAAAACTAACCAACATAAGCTTATCCATGGTAAGATCTATCTCCAAATGCATCAAATGAATTTCGGGCATGTCTACAGAACTGTTTTCAAGTGTTTCTAACAGTGAAGCCAAAAAAAATGCAGAGATCATTGTTTCCGGAGGAATGACCATGCCTCAAAGGATCTCTCATGTGGCAAGAGTTGCGCGACAAAGTGAAAGAATTCCACTGAACAGAATTAAGTAAAAATAGTGATGAACATGACAATGTAGGACGGTTTGTAATTAGTCAA-GGAGGGAAAGAAAAATCATATATACATTGCTGT-AATTTTTCGGATCGATCCGATATATGTT-GTATTATGTCTCTGTTCTGAAGATACAG-TAAAGTTCTCGTTGAAG</genome_strand>
        <mrna_strand>CGCT-TGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATG.........................................................................................TGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAG...................................................................................................................................................................................................................................................................................................................ACAGAAGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACTCCTGGTTAACGCCAATGATGTCATAAAACCAAACATGTCCATCCGTGAAGGCATTG..............................................................................................................................................................................................................................................................AGATCATTGTTTCCGGAGGAATGACCATGCCTNCAAGGATCTCTCATGTGGCAAGAGTTGCGCGACAAAGTGAAAGAATTCCACTGAACAGAATTAAGTAAAAATAGTGATGAACATGACAATGTAGGACGGTTTGTAATTAGTCAAGGGAGGGAAAGAAAAATCATATATACATTGCTGTAAATTTTTCGGATCGAACCGATATATGTTGGAATTATGTCCCCGGTCCGGAGATACAGTTAAAGTTCTCGTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575004" ref_strand="+" ref_description="SGN-E575004 [34561]">
      <seq>ggattattaagcgaatgccatttgtcagacacttatattcggcttcaaagcagatcagttctgcagtgtctccagatcaaaacaccactgcttttaaggaagtggcaatcattcgtcatccccgtgtgggtgaatatgcttttggttttataacatcatcagttacccttcagacggatgaaggggatgaagaattgtatagtgtttttgtccctacaaaccatttgtacattggtgatgtactcttggttaacgccaatgatgtcataagaccaaacatgtccatccgtgaaggcattgagatcattgtttctggaggaatgaccatgcctcaaaggatctctcatgtggcaagagttgcgagacaaagtgaaagaattccactgaacagaattaagtaaaaatagtgatgaacatgacaatgtaggactgtttgtaattagtcaaggagggaaacaaaaatcatatataccttgctgtaatttttcggatcgatccgatgctcttcgatatgttgtattatgtctttcttctcaaaaaaaaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="69757" stop="67462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69457" g_stop="69383" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69382" i_stop="68783" i_length="600">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68782" g_stop="68685" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="173" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68684" i_stop="68378" i_length="307">
            <donor d_prob="0.896" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68377" g_stop="68251" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="300" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68250" i_stop="67997" i_length="254">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67996" g_stop="67796" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="501" r_length="201" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="546"/>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E575004" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69457" e_stop="69383"/>
          <exon e_start="68782" e_stop="68685"/>
          <exon e_start="68377" e_stop="68251"/>
          <exon e_start="67996" e_stop="67796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAGGTAAAGTTACATTTTTCTTCTTCTGAAGAGCACAATGATGAAATGAGACTTACCTTCCATTTGTTAAGGGGAAAGGCAAGGCAAGGAGTGGTGCACTTATCTAATTCACTTCTGGATCCATTTCTTGCTACTATCATCCTGAGATGGAAATGGGAAAGGAGAAGAAACAAGGAGACCGTGTGTGGGATGGGGTGGGGGTGGGGGGTGGGGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCATTGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTACTTGTTCTTGATACTTACTTTTATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAGGTATTTGTTCGCTGTAGCAAGTTTTCCCTTATTACTGCAATAGGGAAAAAACCATCCTTCTTATTATTTTCAGAAATGCATATTTTCTTTTGCTGCTGTGCAGTGCTGAATGTTCTTTTGATGTGCATAAGTTCTTTCTTGAACTACTGACATTTTTCAAAGATAAGCTCCTCATATTCTCTCCGGTGACTTGATAGAGATGAAAGACGAGAAGTAGAAAGAACAACAATAATAGAACACAGAAAAGAGCATTTAATAATATTGTTGGCTGATATATGTACATTGACACATTATTTCTGGATGGCAGACAGAAGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACTCCTGGTTAACGCCAATGATGTCATAAAACCAAACATGTCCATCCGTGAAGGCATTGGTATGTCTCTGGTTTTCTGGTAACTCGTCTTTAATATGTCACTCCTTGTTTTGTACTAGTAGCTCGGTTGACTGGTTGAAGCATGCATCTTAGTTGATGGTGTCTTTAGTTTACTGAGTTATCCAACTTTCTAAAACTAACCAACATAAGCTTATCCATGGTAAGATCTATCTCCAAATGCATCAAATGAATTTCGGGCATGTCTACAGAACTGTTTTCAAGTGTTTCTAACAGTGAAGCCAAAAAAAATGCAGAGATCATTGTTTCCGGAGGAATGACCATGCCTCAAAGGATCTCTCATGTGGCAAGAGTTGCGCGACAAAGTGAAAGAATTCCACTGAACAGAATTAAGTAAAAATAGTGATGAACATGACAATGTAGGACGGTTTGTAATTAGTCAAGGAGGGAAAGAAAAATCATATATACATTGCTGTAATTTTTCGGATCGATCCGAT</genome_strand>
        <mrna_strand>GGATTATTAAGCGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACACCACTGCTTTTAAGGAAGTGGCAATCATTCGTCATCCCCGTGTGGGTGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAG...................................................................................................................................................................................................................................................................................................................ACGGATGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACTCTTGGTTAACGCCAATGATGTCATAAGACCAAACATGTCCATCCGTGAAGGCATTG..............................................................................................................................................................................................................................................................AGATCATTGTTTCTGGAGGAATGACCATGCCTCAAAGGATCTCTCATGTGGCAAGAGTTGCGAGACAAAGTGAAAGAATTCCACTGAACAGAATTAAGTAAAAATAGTGATGAACATGACAATGTAGGACTGTTTGTAATTAGTCAAGGAGGGAAACAAAAATCATATATACCTTGCTGTAATTTTTCGGATCGATCCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618391" ref_strand="+" ref_description="SGN-E618391 [69068]">
      <seq>cacaagtctcttcttcacaataatatcagctgtctgtgttgtttttgcaagtcttctctatttcttgctgagatctagagacaaatccctaaaactaataagcaaaaatggcggaagagaaggatcccacttctataccactaagtcaagcttctgaagatcctgaagacgccatcaaatctactcctgcttcacccaattcttctacccgcaaggcttgctgttattttcttcaaagttgggtatctaagaagtttatgactggatgtgtggttctcttccctgtggcggttacattctttgtgacatggtggtttattcagtttgttgatggtttcttcagtccactatatgaacaacttggcattgacatatttggactaggatttgtcacatctcttgtttttgtattcttagttggaatttttgtttcatcttggctgggtgctactgttttttggattggggaatggattattaagcgaatgccatttgtcagacacttatattcggcttcaaagcagatcagttctgcagtgtctccagatcaaaacaccactgcttttaaggaagtggcaatcattcgtcatccccgtgtgggtgaatatgcttttggttttataacatcatcagttacccttcagacggatgaaggggatgaagaattgtatagtgtttttgtccctacaaaccatttgtacattggtgatgtactcttggttaacgccaatgatgtcataagaccaaaacatgtccatccgtgaaggcattgagatcattgttctggaaggaatgaccaatgctcaaaggatctctcatgtggcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="72891" stop="67641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72592" g_stop="72371" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70730" g_stop="70678" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="268" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70677" i_stop="70589" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.452" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70588" g_stop="70479" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="378" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70478" i_stop="69551" i_length="928">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69550" g_stop="69383" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="546" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69382" i_stop="68783" i_length="600">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68782" g_stop="68685" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="644" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68684" i_stop="68378" i_length="307">
            <donor d_prob="0.896" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68377" g_stop="68251" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="772" r_length="128" r_score="0.953"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68250" i_stop="67997" i_length="254">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67996" g_stop="67941" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="828" r_length="56" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E618391" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72592" e_stop="72371"/>
          <exon e_start="70730" e_stop="70678"/>
          <exon e_start="70588" e_stop="70479"/>
          <exon e_start="69550" e_stop="69383"/>
          <exon e_start="68782" e_stop="68685"/>
          <exon e_start="68377" e_stop="68251"/>
          <exon e_start="67996" e_stop="67941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGTCTCTTCTTCACAATAATATCATCTCAGCTGTCTCTGTGTTGTTTTTGCAAGTCTTCTCTATTTCTTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAGGTCAGTTTTTCTTTCTAAAAGCTGTCTGATTTTTTGAGGTTTTAGAGGAAATTTACTCTTATCCTTGAAGCTAACAGAGATTATGAAGAAAAGGGGAGATGGGTTTTTGTGTTTGGTACAGGAAGTGTATTTTCTTGATTTTGAAAATATGGGAAATGGAGAAGGGATTGGAAAGAATGGCGAAAATGGGGAAATGGATAGTTGTGTTTGCCGCAGGACATGGACAAACTTGTTGAAAAGTATTGAGTTTTCGATATTTTCTTTTTTGGGTTCAAAGGGTAGTGTATATATTTACAATTTATGAATTACCAATTCGAATAAATGCATTTCTCGTTTCCATAGTTTTTGAAGTTGAAGCTTGAAAAATTGAGTTGTTAAAGTTGTGTTTGGACTTGCATTTTACTTGGGAAAAAATAGGATTTTTGTGAGTGGAAGTGAAATTTCTTAATTTCTACCAATTGCAAATATTTGAAAGATAAGAATTTCATGGCCAAATAGATATTTGGGGATAAATTGTCAAAATCTGATCCAAAATCTATGCTAAGTGTGCGGAGAATATTGGTTTTGAAGTAGACACAATTGATTCTTAAAATGAGGTTTTGATGTTTTTTCGTCTTATATACCTGCTCATGTACAATGTGGTTTGTATTTCTTTCACTTGGGTTGGGAGTTATCAAATAGTTAGAGTCAATTTATGCACAAAAAAGAAGGTACATTCTAATAATCTGAATGATGGGTTAATTTTGATATGATCAAAGTCACAGATTTTGTGCATCCTTATAAGAAAAAAAAGGTCATAGATTTTGTGTATCCTTGTAAAAGAAAAAGGTCAATAGATTTTGTGCATCTTATCTACTTATGGGATGTAGTTGGTAATTTGGGTTGGGGTCAAACTTATTAATTTAGCATCAGCCTATGCTAACATACATTCTTGCGTTTTGGTTTTCAAATTGATGTGATAGAGAGATATTATTGTGATTAACTATGTTGCTCGAACTTTTCAAATCCTTCAAATTTCAGTGCTTTTTTTGAGGATCCGACACGGTTGCGCAACATTTTTGGAGAGTCTAAGCAAAATAAGCTACCTAAATCTGTTTGATTTTATATTGGAAGAAAGTTATTTGAACAAGTTTTTAAAAAGAGATGAAGAGTTTTAAAGACCGTTCAACAAAACTTGAATCCGAAAAAGAAGTTCAAACTAGTAAAGAAGTGGTCCAAGTCAGAATAAATGATTTAAGAAAATCCAGGTTCTTTGGGGAGTAAAACAGTATATTTACTTGTCCTTTTCCGACCCAATGTACTAATATATATTCTACATATACTTATACGAAAAGAATCTTCAAATTGGAAAACAAGTTGACACATGAGAACAAATAATTTAGAAAATCCAGGTTCTCTAGAGGGGAACTGTTTGATAGACACCTGAGCTGTATATTCAATCTCGAGTCCTTTTAATGCCAATTGTACTCCAATATATTCAGTCTGGAATTTACTTTGTTTTTTGTGCATGTATAGAGAAGCTCCTATGAGAAAAGGACATATTTAAGCACTCCTCTATATTTAAGCATTCCTCTCTATACATATTCCTGTAGGCAGTTTACTTGTATATATCTTAATTGTTTTTCATACCTCTTTTTCAGGCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATGGTAATTTCTTATATCTATGTTGCGTTACCAATTTTAATAGGTTTTGGCTAACTTTGAATCCGTAACAACTCCAAAATTTGAAATTGCAGTGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTGGTAAGTCCAATTTTCCTACATTTTGATAGCTGCAGTTAGTTTCCTGTATTGGTTTATCCTGCTTCTTGATACTTAGTAGTTCAATACCCTGCATATTCAAGGCTCACCTCGTATTTTCATTTTCAGATATTTCATTATCCTGCATCACTGCAACTTCACCAAATAATATTGCAAATTGTTCTTTAAAATTGAGCTTATCAGCTGCATATATCTCTTTGTGAACATGTAAAAAGTTACTTTACATGTTGAGGAGAAAAGTAATGAAATGCATTATAAACTTTCTTTACTTACTGTAGTGAAGAGTCGGAGCATTATGAGAAAGAATAAGTTTTGGTGATTATATTTTCTTGTCTTGTCTTCATGATGGAAGTACAATTTTGTTTCTGGTATCTGAAGATTTCAGTCAGGGGCTTCAAAAAGGATATTGCTTTCAGCATACAAAATTACAACCAACTATGTCCAGCCATATAAGTCTAAGATGCTCGTGGTTGACCTGGCATAACTACAAATAACTAGAAAAATAGCCATTAATTGTGCTTGCTTCTTTTAACATTGTGTTTAGGGTTTAGCCTTCTCTGACTAACTCGTATGAATTGCTTTGCTCTTATAAATGTGATGTTGATATCAGTGTATATGTAATAATACACTTCTCTTTTCCTGAGTTGTAAATGCCTCTCACGTGTGCGGAAGCCATTGATGTCTATTCTACATGATCAAATATCTAATATTCATTAAGTGTAGAACTTCAGCTGGTTTTTGACTGTCCATTATGTTTTGTGTTATCTTTCTATGTTTCATGCATGATTGATAAATCTCATGTTCCATGCATGATTTATGTGTTGTCCACCTTCCGATCTGTATTAAAAGTTGTTATCTATTGTATATTCCCCATATATCCTGATCTTTCGGACATTTGTTGTTGGTGCAGGACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAGGTAAAGTTACATTTTTCTTCTTCTGAAGAGCACAATGATGAAATGAGACTTACCTTCCATTTGTTAAGGGGAAAGGCAAGGCAAGGAGTGGTGCACTTATCTAATTCACTTCTGGATCCATTTCTTGCTACTATCATCCTGAGATGGAAATGGGAAAGGAGAAGAAACAAGGAGACCGTGTGTGGGATGGGGTGGGGGTGGGGGGTGGGGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCATTGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTACTTGTTCTTGATACTTACTTTTATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAGGTATTTGTTCGCTGTAGCAAGTTTTCCCTTATTACTGCAATAGGGAAAAAACCATCCTTCTTATTATTTTCAGAAATGCATATTTTCTTTTGCTGCTGTGCAGTGCTGAATGTTCTTTTGATGTGCATAAGTTCTTTCTTGAACTACTGACATTTTTCAAAGATAAGCTCCTCATATTCTCTCCGGTGACTTGATAGAGATGAAAGACGAGAAGTAGAAAGAACAACAATAATAGAACACAGAAAAGAGCATTTAATAATATTGTTGGCTGATATATGTACATTGACACATTATTTCTGGATGGCAGACAGAAGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACTCCTGGTTAACGCCAATGATGTCATAAAACCAAA-CATGTCCATCCGTGAAGGCATTGGTATGTCTCTGGTTTTCTGGTAACTCGTCTTTAATATGTCACTCCTTGTTTTGTACTAGTAGCTCGGTTGACTGGTTGAAGCATGCATCTTAGTTGATGGTGTCTTTAGTTTACTGAGTTATCCAACTTTCTAAAACTAACCAACATAAGCTTATCCATGGTAAGATCTATCTCCAAATGCATCAAATGAATTTCGGGCATGTCTACAGAACTGTTTTCAAGTGTTTCTAACAGTGAAGCCAAAAAAAATGCAGAGATCATTGTTTCCGGAGGAATGACCATGCCTCAAAGGATCTCTCATGTGGCAAGA</genome_strand>
        <mrna_strand>CACAAGTCTCTTCTTCACAAT-A-AT-A--TCAGCTG--TCTGTGTTGTTTTTGCAAGTCTTCTCTATTTCTTGCTGAGATCTAGAGACAAATCCCTAAAACTAATAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACGCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATG.........................................................................................TGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAATTTTTGTTTCATCTTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAGCGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACACCACTGCTTTTAAGGAAGTGGCAATCATTCGTCATCCCCGTGTGGGTGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAG...................................................................................................................................................................................................................................................................................................................ACGGATGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACTCTTGGTTAACGCCAATGATGTCATAAGACCAAAACATGTCCATCCGTGAAGGCATTG..............................................................................................................................................................................................................................................................AGATCATTGTTCTGGAAGGAATGACCAATGCTCAAAGGATCTCTCATGTGGCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579207" ref_strand="+" ref_description="SGN-E579207 [86333]">
      <seq>attaagcgaatgccatttgtcagacacttatattcggcttcaaagcagatcagttctgcagtgtctccagatcaaaacaccactgcttttaaggaagtggcaatcattcgtcatccccgtgtgggtgaatatgcttttggttttataacatcatcagttacccttcagacggatgaaggggatgaagaattgtatagtgtttttgtccctacaaaccatttgtacattggtgatgtactcttggttaacgccaatgatgtcataagaccaaacatgtccatccgtgaaggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="69752" stop="67952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69452" g_stop="69383" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69382" i_stop="68783" i_length="600">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68782" g_stop="68685" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="168" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68684" i_stop="68378" i_length="307">
            <donor d_prob="0.896" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68377" g_stop="68252" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="294" r_length="126" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E579207" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69452" e_stop="69383"/>
          <exon e_start="68782" e_stop="68685"/>
          <exon e_start="68377" e_stop="68252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAGGTAAAGTTACATTTTTCTTCTTCTGAAGAGCACAATGATGAAATGAGACTTACCTTCCATTTGTTAAGGGGAAAGGCAAGGCAAGGAGTGGTGCACTTATCTAATTCACTTCTGGATCCATTTCTTGCTACTATCATCCTGAGATGGAAATGGGAAAGGAGAAGAAACAAGGAGACCGTGTGTGGGATGGGGTGGGGGTGGGGGGTGGGGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCATTGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTACTTGTTCTTGATACTTACTTTTATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAGGTATTTGTTCGCTGTAGCAAGTTTTCCCTTATTACTGCAATAGGGAAAAAACCATCCTTCTTATTATTTTCAGAAATGCATATTTTCTTTTGCTGCTGTGCAGTGCTGAATGTTCTTTTGATGTGCATAAGTTCTTTCTTGAACTACTGACATTTTTCAAAGATAAGCTCCTCATATTCTCTCCGGTGACTTGATAGAGATGAAAGACGAGAAGTAGAAAGAACAACAATAATAGAACACAGAAAAGAGCATTTAATAATATTGTTGGCTGATATATGTACATTGACACATTATTTCTGGATGGCAGACAGAAGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACTCCTGGTTAACGCCAATGATGTCATAAAACCAAACATGTCCATCCGTGAAGGCATT</genome_strand>
        <mrna_strand>ATTAAGCGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACACCACTGCTTTTAAGGAAGTGGCAATCATTCGTCATCCCCGTGTGGGTGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAG...................................................................................................................................................................................................................................................................................................................ACGGATGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACTCTTGGTTAACGCCAATGATGTCATAAGACCAAACATGTCCATCCGTGAAGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447290" ref_strand="+" ref_description="SGN-E447290 [cSTA-25-L18]">
      <seq>ttcttgctgagatctagatacaaatccctaaaacaaaaaaagcaaaaatggcggaagagaaggatcccacttctataccactaagtcaagcttctgaagatcctgaagaccccatcaaatctactcctgcttcacccaattcttctacccgcaaggcttgctgttattttcttcaaagttgggtatctaagaagtttatgactggatgtgtggttctcttccctgtggcggttacattctttgtgacatggtggtttattcagtttgttgatggtttcttcagtccactatatgaacaacttggcattgacatatttggactaggatttgtcacatctcttgtttttgtattcttagttggagtttttgtttcatcttggctgggtgctactgttttttggattggggaatggattattaggcgaatgccatttgtcagacacttatattcggcttcaaagcagatcagttctgcagtgtctccagatcaaaacaccactgcttttaaggaagtggcaatcattcgtcatccccgtgtgggtgaatatgcttttggttttataacatcatcagttacccttcagacagatgaaggggatgaagaattgtatagtgtttttgtccctacaaaccatttgtacattggtgatgtactcctggttaacgccaatgatgtcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="72824" stop="67982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72524" g_stop="72371" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70730" g_stop="70678" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="208" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70677" i_stop="70589" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.452" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70588" g_stop="70479" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="318" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70478" i_stop="69551" i_length="928">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69550" g_stop="69383" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="486" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69382" i_stop="68783" i_length="600">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68782" g_stop="68685" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="584" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68684" i_stop="68378" i_length="307">
            <donor d_prob="0.896" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68377" g_stop="68282" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="680" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E447290" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72524" e_stop="72371"/>
          <exon e_start="70730" e_stop="70678"/>
          <exon e_start="70588" e_stop="70479"/>
          <exon e_start="69550" e_stop="69383"/>
          <exon e_start="68782" e_stop="68685"/>
          <exon e_start="68377" e_stop="68282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGCTGAGATCTAGAGACAAAGCCCTAAAAC-TAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAGGTCAGTTTTTCTTTCTAAAAGCTGTCTGATTTTTTGAGGTTTTAGAGGAAATTTACTCTTATCCTTGAAGCTAACAGAGATTATGAAGAAAAGGGGAGATGGGTTTTTGTGTTTGGTACAGGAAGTGTATTTTCTTGATTTTGAAAATATGGGAAATGGAGAAGGGATTGGAAAGAATGGCGAAAATGGGGAAATGGATAGTTGTGTTTGCCGCAGGACATGGACAAACTTGTTGAAAAGTATTGAGTTTTCGATATTTTCTTTTTTGGGTTCAAAGGGTAGTGTATATATTTACAATTTATGAATTACCAATTCGAATAAATGCATTTCTCGTTTCCATAGTTTTTGAAGTTGAAGCTTGAAAAATTGAGTTGTTAAAGTTGTGTTTGGACTTGCATTTTACTTGGGAAAAAATAGGATTTTTGTGAGTGGAAGTGAAATTTCTTAATTTCTACCAATTGCAAATATTTGAAAGATAAGAATTTCATGGCCAAATAGATATTTGGGGATAAATTGTCAAAATCTGATCCAAAATCTATGCTAAGTGTGCGGAGAATATTGGTTTTGAAGTAGACACAATTGATTCTTAAAATGAGGTTTTGATGTTTTTTCGTCTTATATACCTGCTCATGTACAATGTGGTTTGTATTTCTTTCACTTGGGTTGGGAGTTATCAAATAGTTAGAGTCAATTTATGCACAAAAAAGAAGGTACATTCTAATAATCTGAATGATGGGTTAATTTTGATATGATCAAAGTCACAGATTTTGTGCATCCTTATAAGAAAAAAAAGGTCATAGATTTTGTGTATCCTTGTAAAAGAAAAAGGTCAATAGATTTTGTGCATCTTATCTACTTATGGGATGTAGTTGGTAATTTGGGTTGGGGTCAAACTTATTAATTTAGCATCAGCCTATGCTAACATACATTCTTGCGTTTTGGTTTTCAAATTGATGTGATAGAGAGATATTATTGTGATTAACTATGTTGCTCGAACTTTTCAAATCCTTCAAATTTCAGTGCTTTTTTTGAGGATCCGACACGGTTGCGCAACATTTTTGGAGAGTCTAAGCAAAATAAGCTACCTAAATCTGTTTGATTTTATATTGGAAGAAAGTTATTTGAACAAGTTTTTAAAAAGAGATGAAGAGTTTTAAAGACCGTTCAACAAAACTTGAATCCGAAAAAGAAGTTCAAACTAGTAAAGAAGTGGTCCAAGTCAGAATAAATGATTTAAGAAAATCCAGGTTCTTTGGGGAGTAAAACAGTATATTTACTTGTCCTTTTCCGACCCAATGTACTAATATATATTCTACATATACTTATACGAAAAGAATCTTCAAATTGGAAAACAAGTTGACACATGAGAACAAATAATTTAGAAAATCCAGGTTCTCTAGAGGGGAACTGTTTGATAGACACCTGAGCTGTATATTCAATCTCGAGTCCTTTTAATGCCAATTGTACTCCAATATATTCAGTCTGGAATTTACTTTGTTTTTTGTGCATGTATAGAGAAGCTCCTATGAGAAAAGGACATATTTAAGCACTCCTCTATATTTAAGCATTCCTCTCTATACATATTCCTGTAGGCAGTTTACTTGTATATATCTTAATTGTTTTTCATACCTCTTTTTCAGGCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATGGTAATTTCTTATATCTATGTTGCGTTACCAATTTTAATAGGTTTTGGCTAACTTTGAATCCGTAACAACTCCAAAATTTGAAATTGCAGTGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTGGTAAGTCCAATTTTCCTACATTTTGATAGCTGCAGTTAGTTTCCTGTATTGGTTTATCCTGCTTCTTGATACTTAGTAGTTCAATACCCTGCATATTCAAGGCTCACCTCGTATTTTCATTTTCAGATATTTCATTATCCTGCATCACTGCAACTTCACCAAATAATATTGCAAATTGTTCTTTAAAATTGAGCTTATCAGCTGCATATATCTCTTTGTGAACATGTAAAAAGTTACTTTACATGTTGAGGAGAAAAGTAATGAAATGCATTATAAACTTTCTTTACTTACTGTAGTGAAGAGTCGGAGCATTATGAGAAAGAATAAGTTTTGGTGATTATATTTTCTTGTCTTGTCTTCATGATGGAAGTACAATTTTGTTTCTGGTATCTGAAGATTTCAGTCAGGGGCTTCAAAAAGGATATTGCTTTCAGCATACAAAATTACAACCAACTATGTCCAGCCATATAAGTCTAAGATGCTCGTGGTTGACCTGGCATAACTACAAATAACTAGAAAAATAGCCATTAATTGTGCTTGCTTCTTTTAACATTGTGTTTAGGGTTTAGCCTTCTCTGACTAACTCGTATGAATTGCTTTGCTCTTATAAATGTGATGTTGATATCAGTGTATATGTAATAATACACTTCTCTTTTCCTGAGTTGTAAATGCCTCTCACGTGTGCGGAAGCCATTGATGTCTATTCTACATGATCAAATATCTAATATTCATTAAGTGTAGAACTTCAGCTGGTTTTTGACTGTCCATTATGTTTTGTGTTATCTTTCTATGTTTCATGCATGATTGATAAATCTCATGTTCCATGCATGATTTATGTGTTGTCCACCTTCCGATCTGTATTAAAAGTTGTTATCTATTGTATATTCCCCATATATCCTGATCTTTCGGACATTTGTTGTTGGTGCAGGACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAGGTAAAGTTACATTTTTCTTCTTCTGAAGAGCACAATGATGAAATGAGACTTACCTTCCATTTGTTAAGGGGAAAGGCAAGGCAAGGAGTGGTGCACTTATCTAATTCACTTCTGGATCCATTTCTTGCTACTATCATCCTGAGATGGAAATGGGAAAGGAGAAGAAACAAGGAGACCGTGTGTGGGATGGGGTGGGGGTGGGGGGTGGGGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCATTGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTACTTGTTCTTGATACTTACTTTTATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAGGTATTTGTTCGCTGTAGCAAGTTTTCCCTTATTACTGCAATAGGGAAAAAACCATCCTTCTTATTATTTTCAGAAATGCATATTTTCTTTTGCTGCTGTGCAGTGCTGAATGTTCTTTTGATGTGCATAAGTTCTTTCTTGAACTACTGACATTTTTCAAAGATAAGCTCCTCATATTCTCTCCGGTGACTTGATAGAGATGAAAGACGAGAAGTAGAAAGAACAACAATAATAGAACACAGAAAAGAGCATTTAATAATATTGTTGGCTGATATATGTACATTGACACATTATTTCTGGATGGCAGACAGAAGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACTCCTGGTTAACGCCAATGATGTCATA</genome_strand>
        <mrna_strand>TTCTTGCTGAGATCTAGATACAAATCCCTAAAACAAAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATG.........................................................................................TGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCTTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAGGCGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACACCACTGCTTTTAAGGAAGTGGCAATCATTCGTCATCCCCGTGTGGGTGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAG...................................................................................................................................................................................................................................................................................................................ACAGATGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACTCCTGGTTAACGCCAATGATGTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447305" ref_strand="+" ref_description="SGN-E447305 [cSTA-25-P14]">
      <seq>ttcttgctgagatctagagacaaatccctaaaacaaaaaaagcaaaaatggcggaagagaaggatcccacttctatacccactaagtcaagcttctgaagatcctgaagaccccatcaaatctactcctgcttcacccaattcttctacccgcaaggcttgctgttattttcttcaaagttgggtatctaagaagtttatgactggatgtgtggttctcttccctgtggcggttacattctttgtgacatggtggtttattcagtttgttgatggtttcttcagtccactatatgaacaacttggcattgacatatttggactaggatttgtcacatctcttgtttttgtattcttagttggagtttttgtttcatcttggctgggtgctactgttttttggattggggaatggattattaggcgaatgccatttgtcagacacttatattcggcttcaaagcagatcagttctgcagtgtctccagatcaaaacaccactgcttttaaggaagtggcaatcattcgtcatccccgtgtgggtgaatatgcttttggttttataacatcatcagttacccttcagacagatgaaggggatgaagaattgtatagtgtttttgtccctacaaaccatttgtacattggtgatgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="72824" stop="68007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72524" g_stop="72371" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70730" g_stop="70678" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="209" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70677" i_stop="70589" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.452" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70588" g_stop="70479" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="319" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70478" i_stop="69551" i_length="928">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69550" g_stop="69383" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="487" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69382" i_stop="68783" i_length="600">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68782" g_stop="68685" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="585" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68684" i_stop="68378" i_length="307">
            <donor d_prob="0.896" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68377" g_stop="68307" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="656" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E447305" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72524" e_stop="72371"/>
          <exon e_start="70730" e_stop="70678"/>
          <exon e_start="70588" e_stop="70479"/>
          <exon e_start="69550" e_stop="69383"/>
          <exon e_start="68782" e_stop="68685"/>
          <exon e_start="68377" e_stop="68307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAA-GCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATA-CCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAGGTCAGTTTTTCTTTCTAAAAGCTGTCTGATTTTTTGAGGTTTTAGAGGAAATTTACTCTTATCCTTGAAGCTAACAGAGATTATGAAGAAAAGGGGAGATGGGTTTTTGTGTTTGGTACAGGAAGTGTATTTTCTTGATTTTGAAAATATGGGAAATGGAGAAGGGATTGGAAAGAATGGCGAAAATGGGGAAATGGATAGTTGTGTTTGCCGCAGGACATGGACAAACTTGTTGAAAAGTATTGAGTTTTCGATATTTTCTTTTTTGGGTTCAAAGGGTAGTGTATATATTTACAATTTATGAATTACCAATTCGAATAAATGCATTTCTCGTTTCCATAGTTTTTGAAGTTGAAGCTTGAAAAATTGAGTTGTTAAAGTTGTGTTTGGACTTGCATTTTACTTGGGAAAAAATAGGATTTTTGTGAGTGGAAGTGAAATTTCTTAATTTCTACCAATTGCAAATATTTGAAAGATAAGAATTTCATGGCCAAATAGATATTTGGGGATAAATTGTCAAAATCTGATCCAAAATCTATGCTAAGTGTGCGGAGAATATTGGTTTTGAAGTAGACACAATTGATTCTTAAAATGAGGTTTTGATGTTTTTTCGTCTTATATACCTGCTCATGTACAATGTGGTTTGTATTTCTTTCACTTGGGTTGGGAGTTATCAAATAGTTAGAGTCAATTTATGCACAAAAAAGAAGGTACATTCTAATAATCTGAATGATGGGTTAATTTTGATATGATCAAAGTCACAGATTTTGTGCATCCTTATAAGAAAAAAAAGGTCATAGATTTTGTGTATCCTTGTAAAAGAAAAAGGTCAATAGATTTTGTGCATCTTATCTACTTATGGGATGTAGTTGGTAATTTGGGTTGGGGTCAAACTTATTAATTTAGCATCAGCCTATGCTAACATACATTCTTGCGTTTTGGTTTTCAAATTGATGTGATAGAGAGATATTATTGTGATTAACTATGTTGCTCGAACTTTTCAAATCCTTCAAATTTCAGTGCTTTTTTTGAGGATCCGACACGGTTGCGCAACATTTTTGGAGAGTCTAAGCAAAATAAGCTACCTAAATCTGTTTGATTTTATATTGGAAGAAAGTTATTTGAACAAGTTTTTAAAAAGAGATGAAGAGTTTTAAAGACCGTTCAACAAAACTTGAATCCGAAAAAGAAGTTCAAACTAGTAAAGAAGTGGTCCAAGTCAGAATAAATGATTTAAGAAAATCCAGGTTCTTTGGGGAGTAAAACAGTATATTTACTTGTCCTTTTCCGACCCAATGTACTAATATATATTCTACATATACTTATACGAAAAGAATCTTCAAATTGGAAAACAAGTTGACACATGAGAACAAATAATTTAGAAAATCCAGGTTCTCTAGAGGGGAACTGTTTGATAGACACCTGAGCTGTATATTCAATCTCGAGTCCTTTTAATGCCAATTGTACTCCAATATATTCAGTCTGGAATTTACTTTGTTTTTTGTGCATGTATAGAGAAGCTCCTATGAGAAAAGGACATATTTAAGCACTCCTCTATATTTAAGCATTCCTCTCTATACATATTCCTGTAGGCAGTTTACTTGTATATATCTTAATTGTTTTTCATACCTCTTTTTCAGGCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATGGTAATTTCTTATATCTATGTTGCGTTACCAATTTTAATAGGTTTTGGCTAACTTTGAATCCGTAACAACTCCAAAATTTGAAATTGCAGTGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTGGTAAGTCCAATTTTCCTACATTTTGATAGCTGCAGTTAGTTTCCTGTATTGGTTTATCCTGCTTCTTGATACTTAGTAGTTCAATACCCTGCATATTCAAGGCTCACCTCGTATTTTCATTTTCAGATATTTCATTATCCTGCATCACTGCAACTTCACCAAATAATATTGCAAATTGTTCTTTAAAATTGAGCTTATCAGCTGCATATATCTCTTTGTGAACATGTAAAAAGTTACTTTACATGTTGAGGAGAAAAGTAATGAAATGCATTATAAACTTTCTTTACTTACTGTAGTGAAGAGTCGGAGCATTATGAGAAAGAATAAGTTTTGGTGATTATATTTTCTTGTCTTGTCTTCATGATGGAAGTACAATTTTGTTTCTGGTATCTGAAGATTTCAGTCAGGGGCTTCAAAAAGGATATTGCTTTCAGCATACAAAATTACAACCAACTATGTCCAGCCATATAAGTCTAAGATGCTCGTGGTTGACCTGGCATAACTACAAATAACTAGAAAAATAGCCATTAATTGTGCTTGCTTCTTTTAACATTGTGTTTAGGGTTTAGCCTTCTCTGACTAACTCGTATGAATTGCTTTGCTCTTATAAATGTGATGTTGATATCAGTGTATATGTAATAATACACTTCTCTTTTCCTGAGTTGTAAATGCCTCTCACGTGTGCGGAAGCCATTGATGTCTATTCTACATGATCAAATATCTAATATTCATTAAGTGTAGAACTTCAGCTGGTTTTTGACTGTCCATTATGTTTTGTGTTATCTTTCTATGTTTCATGCATGATTGATAAATCTCATGTTCCATGCATGATTTATGTGTTGTCCACCTTCCGATCTGTATTAAAAGTTGTTATCTATTGTATATTCCCCATATATCCTGATCTTTCGGACATTTGTTGTTGGTGCAGGACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAGGTAAAGTTACATTTTTCTTCTTCTGAAGAGCACAATGATGAAATGAGACTTACCTTCCATTTGTTAAGGGGAAAGGCAAGGCAAGGAGTGGTGCACTTATCTAATTCACTTCTGGATCCATTTCTTGCTACTATCATCCTGAGATGGAAATGGGAAAGGAGAAGAAACAAGGAGACCGTGTGTGGGATGGGGTGGGGGTGGGGGGTGGGGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCATTGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTACTTGTTCTTGATACTTACTTTTATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAGGTATTTGTTCGCTGTAGCAAGTTTTCCCTTATTACTGCAATAGGGAAAAAACCATCCTTCTTATTATTTTCAGAAATGCATATTTTCTTTTGCTGCTGTGCAGTGCTGAATGTTCTTTTGATGTGCATAAGTTCTTTCTTGAACTACTGACATTTTTCAAAGATAAGCTCCTCATATTCTCTCCGGTGACTTGATAGAGATGAAAGACGAGAAGTAGAAAGAACAACAATAATAGAACACAGAAAAGAGCATTTAATAATATTGTTGGCTGATATATGTACATTGACACATTATTTCTGGATGGCAGACAGAAGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACT</genome_strand>
        <mrna_strand>TTCTTGCTGAGATCTAGAGACAAATCCCTAAAACAAAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATG.........................................................................................TGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCTTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAGGCGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACACCACTGCTTTTAAGGAAGTGGCAATCATTCGTCATCCCCGTGTGGGTGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAG...................................................................................................................................................................................................................................................................................................................ACAGATGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275372" ref_strand="+" ref_description="SGN-E275372 [cLEN-10-C14]">
      <seq>atcccacttctataccactaagtcaagcttctgaagatcctgaagaccccatcaaatctactcctgcttcacccaattcttctacccgcaaggcttgctgttattttcttcaaagttgggtatctaagaagtttatgactggatgtgtggttctcttccctgtggcggttacattctttgtgacatggtggtttattcagtttgttgatggtttcttcagtccactatatgaacaacttggcattgacatatttggactaggatttgtcacatctcttgtttttgtattcttagttggagtttttgtttcatcctggctgggtgctactgttttttggattggggaatggattattaaacgaatgccatttgtcagacacttatattcggcttcaaagcagatcagttctgcagtgtctccagatcaaaacaccaccgcttttaaggaagtggcaattattcgtcatccccgtgtgggggaatatgcttttggttttataacatcatcagttacccttcagacagaagaaggggatgaagaattgtatagtgtttttgtccctacaaaccatttgtacattggtgatgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="72762" stop="68007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72462" g_stop="72371" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70730" g_stop="70678" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="145" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70677" i_stop="70589" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.452" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70588" g_stop="70479" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="255" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70478" i_stop="69551" i_length="928">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69550" g_stop="69383" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="423" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69382" i_stop="68783" i_length="600">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68782" g_stop="68685" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="521" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68684" i_stop="68378" i_length="307">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68377" g_stop="68307" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="592" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E275372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72462" e_stop="72371"/>
          <exon e_start="70730" e_stop="70678"/>
          <exon e_start="70588" e_stop="70479"/>
          <exon e_start="69550" e_stop="69383"/>
          <exon e_start="68782" e_stop="68685"/>
          <exon e_start="68377" e_stop="68307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAGGTCAGTTTTTCTTTCTAAAAGCTGTCTGATTTTTTGAGGTTTTAGAGGAAATTTACTCTTATCCTTGAAGCTAACAGAGATTATGAAGAAAAGGGGAGATGGGTTTTTGTGTTTGGTACAGGAAGTGTATTTTCTTGATTTTGAAAATATGGGAAATGGAGAAGGGATTGGAAAGAATGGCGAAAATGGGGAAATGGATAGTTGTGTTTGCCGCAGGACATGGACAAACTTGTTGAAAAGTATTGAGTTTTCGATATTTTCTTTTTTGGGTTCAAAGGGTAGTGTATATATTTACAATTTATGAATTACCAATTCGAATAAATGCATTTCTCGTTTCCATAGTTTTTGAAGTTGAAGCTTGAAAAATTGAGTTGTTAAAGTTGTGTTTGGACTTGCATTTTACTTGGGAAAAAATAGGATTTTTGTGAGTGGAAGTGAAATTTCTTAATTTCTACCAATTGCAAATATTTGAAAGATAAGAATTTCATGGCCAAATAGATATTTGGGGATAAATTGTCAAAATCTGATCCAAAATCTATGCTAAGTGTGCGGAGAATATTGGTTTTGAAGTAGACACAATTGATTCTTAAAATGAGGTTTTGATGTTTTTTCGTCTTATATACCTGCTCATGTACAATGTGGTTTGTATTTCTTTCACTTGGGTTGGGAGTTATCAAATAGTTAGAGTCAATTTATGCACAAAAAAGAAGGTACATTCTAATAATCTGAATGATGGGTTAATTTTGATATGATCAAAGTCACAGATTTTGTGCATCCTTATAAGAAAAAAAAGGTCATAGATTTTGTGTATCCTTGTAAAAGAAAAAGGTCAATAGATTTTGTGCATCTTATCTACTTATGGGATGTAGTTGGTAATTTGGGTTGGGGTCAAACTTATTAATTTAGCATCAGCCTATGCTAACATACATTCTTGCGTTTTGGTTTTCAAATTGATGTGATAGAGAGATATTATTGTGATTAACTATGTTGCTCGAACTTTTCAAATCCTTCAAATTTCAGTGCTTTTTTTGAGGATCCGACACGGTTGCGCAACATTTTTGGAGAGTCTAAGCAAAATAAGCTACCTAAATCTGTTTGATTTTATATTGGAAGAAAGTTATTTGAACAAGTTTTTAAAAAGAGATGAAGAGTTTTAAAGACCGTTCAACAAAACTTGAATCCGAAAAAGAAGTTCAAACTAGTAAAGAAGTGGTCCAAGTCAGAATAAATGATTTAAGAAAATCCAGGTTCTTTGGGGAGTAAAACAGTATATTTACTTGTCCTTTTCCGACCCAATGTACTAATATATATTCTACATATACTTATACGAAAAGAATCTTCAAATTGGAAAACAAGTTGACACATGAGAACAAATAATTTAGAAAATCCAGGTTCTCTAGAGGGGAACTGTTTGATAGACACCTGAGCTGTATATTCAATCTCGAGTCCTTTTAATGCCAATTGTACTCCAATATATTCAGTCTGGAATTTACTTTGTTTTTTGTGCATGTATAGAGAAGCTCCTATGAGAAAAGGACATATTTAAGCACTCCTCTATATTTAAGCATTCCTCTCTATACATATTCCTGTAGGCAGTTTACTTGTATATATCTTAATTGTTTTTCATACCTCTTTTTCAGGCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATGGTAATTTCTTATATCTATGTTGCGTTACCAATTTTAATAGGTTTTGGCTAACTTTGAATCCGTAACAACTCCAAAATTTGAAATTGCAGTGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTGGTAAGTCCAATTTTCCTACATTTTGATAGCTGCAGTTAGTTTCCTGTATTGGTTTATCCTGCTTCTTGATACTTAGTAGTTCAATACCCTGCATATTCAAGGCTCACCTCGTATTTTCATTTTCAGATATTTCATTATCCTGCATCACTGCAACTTCACCAAATAATATTGCAAATTGTTCTTTAAAATTGAGCTTATCAGCTGCATATATCTCTTTGTGAACATGTAAAAAGTTACTTTACATGTTGAGGAGAAAAGTAATGAAATGCATTATAAACTTTCTTTACTTACTGTAGTGAAGAGTCGGAGCATTATGAGAAAGAATAAGTTTTGGTGATTATATTTTCTTGTCTTGTCTTCATGATGGAAGTACAATTTTGTTTCTGGTATCTGAAGATTTCAGTCAGGGGCTTCAAAAAGGATATTGCTTTCAGCATACAAAATTACAACCAACTATGTCCAGCCATATAAGTCTAAGATGCTCGTGGTTGACCTGGCATAACTACAAATAACTAGAAAAATAGCCATTAATTGTGCTTGCTTCTTTTAACATTGTGTTTAGGGTTTAGCCTTCTCTGACTAACTCGTATGAATTGCTTTGCTCTTATAAATGTGATGTTGATATCAGTGTATATGTAATAATACACTTCTCTTTTCCTGAGTTGTAAATGCCTCTCACGTGTGCGGAAGCCATTGATGTCTATTCTACATGATCAAATATCTAATATTCATTAAGTGTAGAACTTCAGCTGGTTTTTGACTGTCCATTATGTTTTGTGTTATCTTTCTATGTTTCATGCATGATTGATAAATCTCATGTTCCATGCATGATTTATGTGTTGTCCACCTTCCGATCTGTATTAAAAGTTGTTATCTATTGTATATTCCCCATATATCCTGATCTTTCGGACATTTGTTGTTGGTGCAGGACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAGGTAAAGTTACATTTTTCTTCTTCTGAAGAGCACAATGATGAAATGAGACTTACCTTCCATTTGTTAAGGGGAAAGGCAAGGCAAGGAGTGGTGCACTTATCTAATTCACTTCTGGATCCATTTCTTGCTACTATCATCCTGAGATGGAAATGGGAAAGGAGAAGAAACAAGGAGACCGTGTGTGGGATGGGGTGGGGGTGGGGGGTGGGGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCATTGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTACTTGTTCTTGATACTTACTTTTATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAGGTATTTGTTCGCTGTAGCAAGTTTTCCCTTATTACTGCAATAGGGAAAAAACCATCCTTCTTATTATTTTCAGAAATGCATATTTTCTTTTGCTGCTGTGCAGTGCTGAATGTTCTTTTGATGTGCATAAGTTCTTTCTTGAACTACTGACATTTTTCAAAGATAAGCTCCTCATATTCTCTCCGGTGACTTGATAGAGATGAAAGACGAGAAGTAGAAAGAACAACAATAATAGAACACAGAAAAGAGCATTTAATAATATTGTTGGCTGATATATGTACATTGACACATTATTTCTGGATGGCAGACAGAAGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACT</genome_strand>
        <mrna_strand>ATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATG.........................................................................................TGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAG...................................................................................................................................................................................................................................................................................................................ACAGAAGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431452" ref_strand="+" ref_description="SGN-E431452 [STM-55-O22]">
      <seq>gctgaatggggttatttcataatagtttactgaatatgttactatcaccttttcctttcatcaagaaaagggtggatggcaaaagaaagaaaaaggaaggataatctctagcggtggagtgtgacgaatttcagagctgtgatgtaaacatgtgaaatctgaaataaactttcatcagatgtcctggactttcatttaaataataaagggtgtcaaaaagcatggggatcaggaccataagacagacaatacatcaaatttgtgcctcgaagattaagaaataagtactttattttgagagttgaggttgctacctggagtattttgattttgctgtattctcttattactttttgttcttgatacttacttttcattcgtatataatctacagatcaaaacaccactgcttttaaggaagtggcaatcattcgtcatccccgtgtgggtgaatatgcttttggttttataacatcatcagttacccttcaggtatttttttgctatagcaagtttttcgctgcaatagggaaaaaaccatcttcttcattactttcagaaatgcatattttcttttgctgctatacaatgctgaatgttcttttgatgtgcataagttctttcttgaactactgccatttttcaaagatatgctcctcatattctctcttgggtgacttgatagagatgaatgacgagaagcngaaagaacactantatagaacacggaaaagagcatttaataattttgtgggctgatatatgtacattgacgcatcatttctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="69442" stop="68084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69174" g_stop="68384" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="788" r_length="788" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E431452" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69174" e_stop="68384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCAT-TGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTAC---TTGTTCTTGATACTTACTTTT-ATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAGGTATTTGTTCGCTGTAGCAAGTTTTCCCTTATTACTGCAATAGGGAAAAAACCATCCTTCTT-ATTATTTTCAGAAATGCATATTTTCTTTTGCTGCTGTGCAGTGCTGAATGTTCTTTTGATGTGCATAAGTTCTTTCTTGAACTACTGACATTTTTCAAAGATAAGCTCCTCATATTCTCTC--CGGTGACTTGATAGAGATGAAAGACGAGAAGTAGAAAGAACAACAATAATAGAACACAGAAAAGAGCATTTAATAATATTGTTGGCTGATATATGTACATTGACACATTATTTCTGGA</genome_strand>
        <mrna_strand>GCTGAATGGGGTTATTTCATAATAGTTTACTG-A-A-TATGTTACTATCACCTTTTCCTTTCATCAAGAAAAGGGTGGATGGCAAAAGAAAGAAAAAGGAAGGATAATCTCTAGCGGTGGAGTGTGACGAATTTCAGAGCTGTGATGTAAACATGTGAAATCTGAAATAAACTTTCATCAGATGTCCTGGACTTTCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAATTTGTGCCTCGAAGATTAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGATTTTGCTGTATTCTCTTATTACTTTTTGTTCTTGATACTTACTTTTCATTCGTATATAATCTACAGATCAAAACACCACTGCTTTTAAGGAAGTGGCAATCATTCGTCATCCCCGTGTGGGTGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAGGTATTTTTTTGCTATAGCAAG--TT---TT-TCGCTGCAATAGGGAAAAAACCAT-CTTCTTCATTACTTTCAGAAATGCATATTTTCTTTTGCTGCTATACAATGCTGAATGTTCTTTTGATGTGCATAAGTTCTTTCTTGAACTACTGCCATTTTTCAAAGATATGCTCCTCATATTCTCTCTTGGGTGACTTGATAGAGATGAATGACGAGAAGCNGAAAGAAC-ACTANTATAGAACACGGAAAAGAGCATTTAATAATTTTGTGGGCTGATATATGTACATTGACGCATCATTTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464304" ref_strand="+" ref_description="SGN-E464304 [cPRO-17-J5]">
      <seq>gctgaatggggttatttcataatagtttactgaatatgttactatcaccttttcctttcatcaagaaaagggtggatggcaaaagaaagaaaaaggaaggataatctctagcggtggagtgtgacgaatttcagagctgtgatgtaaacatgtgaaatctgaaataaactttcatcagatgtcctggactttcatttaaataataaagggtgtcaaaaagcatggggatcaggaccataagacagacaatacatcaaatttgtgcctcgaagattaagaaataagtactttattttgagagttgaggttgctacctggagtattttgattttgctgtattctcttattactttttgttcttgatacttacttttcattcgtatataatctacagatcaaaacaccactgcttttaaggaagtggcaatcattcgtcatccccgtgtgggtgaatatgcttttggttttataacatcatcagttacccttcaggtatttttttgctatagcaagtttttcgctgcaatagggaaaaaaccatcttcttcattactttcagaaatgcatattttcttttgctgctatacaatgctgaatgttcttttgatgtgcataagttctttcttgaactactgccatttttcaaagatatgctcctcatattctctcttgggtgacttgatagagatgaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="69442" stop="68178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69174" g_stop="68478" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E464304" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69174" e_stop="68478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCAT-TGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTAC---TTGTTCTTGATACTTACTTTT-ATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAGGTATTTGTTCGCTGTAGCAAGTTTTCCCTTATTACTGCAATAGGGAAAAAACCATCCTTCTT-ATTATTTTCAGAAATGCATATTTTCTTTTGCTGCTGTGCAGTGCTGAATGTTCTTTTGATGTGCATAAGTTCTTTCTTGAACTACTGACATTTTTCAAAGATAAGCTCCTCATATTCTCTC--CGGTGACTTGATAGAGATGAAAGA</genome_strand>
        <mrna_strand>GCTGAATGGGGTTATTTCATAATAGTTTACTG-A-A-TATGTTACTATCACCTTTTCCTTTCATCAAGAAAAGGGTGGATGGCAAAAGAAAGAAAAAGGAAGGATAATCTCTAGCGGTGGAGTGTGACGAATTTCAGAGCTGTGATGTAAACATGTGAAATCTGAAATAAACTTTCATCAGATGTCCTGGACTTTCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAATTTGTGCCTCGAAGATTAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGATTTTGCTGTATTCTCTTATTACTTTTTGTTCTTGATACTTACTTTTCATTCGTATATAATCTACAGATCAAAACACCACTGCTTTTAAGGAAGTGGCAATCATTCGTCATCCCCGTGTGGGTGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAGGTATTTTTTTGCTATAGCAAG--TT---TT-TCGCTGCAATAGGGAAAAAACCAT-CTTCTTCATTACTTTCAGAAATGCATATTTTCTTTTGCTGCTATACAATGCTGAATGTTCTTTTGATGTGCATAAGTTCTTTCTTGAACTACTGCCATTTTTCAAAGATATGCTCCTCATATTCTCTCTTGGGTGACTTGATAGAGATGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447296" ref_strand="+" ref_description="SGN-E447296 [cSTA-25-N14]">
      <seq>ttcttgctgagatctagagacaaatccctaaaacaaaaaaagcaaaaatggcggaagagaaggatcccacttctataccactaagtcaagccttctgaagatcctgaagaccccatcaaatctactcctgcttcacccaattcttctacccgcaaggcttgctgttattttcttcaaagttgggtatctaagaagtttatgactggatgtgtggttctcttccctgtggcggttacattctttgtgacatggtggtttattcagtttgttgatggtttcttcagtccactatatgaacaacttggcattgacatatttggactaggatttgtcacatctcttgtttttgtattcttagttggagtttttgtttcatcttggctgggtgctactgttttttggattggggaatggattattaggcgaatgccatttgtcagacacttatattcggcttcaaagcagatcagttctgcagtgtctccagatcaaaacaccactgcttttaaggaagtggcaatcattcgtcatccccgtgtgggtgaatatgcttttggttttataacatcatcagttacccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="72824" stop="68387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72524" g_stop="72371" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70730" g_stop="70678" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="209" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70677" i_stop="70589" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.452" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70588" g_stop="70479" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="319" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70478" i_stop="69551" i_length="928">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69550" g_stop="69383" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="487" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69382" i_stop="68783" i_length="600">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68782" g_stop="68687" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="583" r_length="96" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E447296" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72524" e_stop="72371"/>
          <exon e_start="70730" e_stop="70678"/>
          <exon e_start="70588" e_stop="70479"/>
          <exon e_start="69550" e_stop="69383"/>
          <exon e_start="68782" e_stop="68687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAA-GCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAG-CTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAGGTCAGTTTTTCTTTCTAAAAGCTGTCTGATTTTTTGAGGTTTTAGAGGAAATTTACTCTTATCCTTGAAGCTAACAGAGATTATGAAGAAAAGGGGAGATGGGTTTTTGTGTTTGGTACAGGAAGTGTATTTTCTTGATTTTGAAAATATGGGAAATGGAGAAGGGATTGGAAAGAATGGCGAAAATGGGGAAATGGATAGTTGTGTTTGCCGCAGGACATGGACAAACTTGTTGAAAAGTATTGAGTTTTCGATATTTTCTTTTTTGGGTTCAAAGGGTAGTGTATATATTTACAATTTATGAATTACCAATTCGAATAAATGCATTTCTCGTTTCCATAGTTTTTGAAGTTGAAGCTTGAAAAATTGAGTTGTTAAAGTTGTGTTTGGACTTGCATTTTACTTGGGAAAAAATAGGATTTTTGTGAGTGGAAGTGAAATTTCTTAATTTCTACCAATTGCAAATATTTGAAAGATAAGAATTTCATGGCCAAATAGATATTTGGGGATAAATTGTCAAAATCTGATCCAAAATCTATGCTAAGTGTGCGGAGAATATTGGTTTTGAAGTAGACACAATTGATTCTTAAAATGAGGTTTTGATGTTTTTTCGTCTTATATACCTGCTCATGTACAATGTGGTTTGTATTTCTTTCACTTGGGTTGGGAGTTATCAAATAGTTAGAGTCAATTTATGCACAAAAAAGAAGGTACATTCTAATAATCTGAATGATGGGTTAATTTTGATATGATCAAAGTCACAGATTTTGTGCATCCTTATAAGAAAAAAAAGGTCATAGATTTTGTGTATCCTTGTAAAAGAAAAAGGTCAATAGATTTTGTGCATCTTATCTACTTATGGGATGTAGTTGGTAATTTGGGTTGGGGTCAAACTTATTAATTTAGCATCAGCCTATGCTAACATACATTCTTGCGTTTTGGTTTTCAAATTGATGTGATAGAGAGATATTATTGTGATTAACTATGTTGCTCGAACTTTTCAAATCCTTCAAATTTCAGTGCTTTTTTTGAGGATCCGACACGGTTGCGCAACATTTTTGGAGAGTCTAAGCAAAATAAGCTACCTAAATCTGTTTGATTTTATATTGGAAGAAAGTTATTTGAACAAGTTTTTAAAAAGAGATGAAGAGTTTTAAAGACCGTTCAACAAAACTTGAATCCGAAAAAGAAGTTCAAACTAGTAAAGAAGTGGTCCAAGTCAGAATAAATGATTTAAGAAAATCCAGGTTCTTTGGGGAGTAAAACAGTATATTTACTTGTCCTTTTCCGACCCAATGTACTAATATATATTCTACATATACTTATACGAAAAGAATCTTCAAATTGGAAAACAAGTTGACACATGAGAACAAATAATTTAGAAAATCCAGGTTCTCTAGAGGGGAACTGTTTGATAGACACCTGAGCTGTATATTCAATCTCGAGTCCTTTTAATGCCAATTGTACTCCAATATATTCAGTCTGGAATTTACTTTGTTTTTTGTGCATGTATAGAGAAGCTCCTATGAGAAAAGGACATATTTAAGCACTCCTCTATATTTAAGCATTCCTCTCTATACATATTCCTGTAGGCAGTTTACTTGTATATATCTTAATTGTTTTTCATACCTCTTTTTCAGGCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATGGTAATTTCTTATATCTATGTTGCGTTACCAATTTTAATAGGTTTTGGCTAACTTTGAATCCGTAACAACTCCAAAATTTGAAATTGCAGTGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTGGTAAGTCCAATTTTCCTACATTTTGATAGCTGCAGTTAGTTTCCTGTATTGGTTTATCCTGCTTCTTGATACTTAGTAGTTCAATACCCTGCATATTCAAGGCTCACCTCGTATTTTCATTTTCAGATATTTCATTATCCTGCATCACTGCAACTTCACCAAATAATATTGCAAATTGTTCTTTAAAATTGAGCTTATCAGCTGCATATATCTCTTTGTGAACATGTAAAAAGTTACTTTACATGTTGAGGAGAAAAGTAATGAAATGCATTATAAACTTTCTTTACTTACTGTAGTGAAGAGTCGGAGCATTATGAGAAAGAATAAGTTTTGGTGATTATATTTTCTTGTCTTGTCTTCATGATGGAAGTACAATTTTGTTTCTGGTATCTGAAGATTTCAGTCAGGGGCTTCAAAAAGGATATTGCTTTCAGCATACAAAATTACAACCAACTATGTCCAGCCATATAAGTCTAAGATGCTCGTGGTTGACCTGGCATAACTACAAATAACTAGAAAAATAGCCATTAATTGTGCTTGCTTCTTTTAACATTGTGTTTAGGGTTTAGCCTTCTCTGACTAACTCGTATGAATTGCTTTGCTCTTATAAATGTGATGTTGATATCAGTGTATATGTAATAATACACTTCTCTTTTCCTGAGTTGTAAATGCCTCTCACGTGTGCGGAAGCCATTGATGTCTATTCTACATGATCAAATATCTAATATTCATTAAGTGTAGAACTTCAGCTGGTTTTTGACTGTCCATTATGTTTTGTGTTATCTTTCTATGTTTCATGCATGATTGATAAATCTCATGTTCCATGCATGATTTATGTGTTGTCCACCTTCCGATCTGTATTAAAAGTTGTTATCTATTGTATATTCCCCATATATCCTGATCTTTCGGACATTTGTTGTTGGTGCAGGACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAGGTAAAGTTACATTTTTCTTCTTCTGAAGAGCACAATGATGAAATGAGACTTACCTTCCATTTGTTAAGGGGAAAGGCAAGGCAAGGAGTGGTGCACTTATCTAATTCACTTCTGGATCCATTTCTTGCTACTATCATCCTGAGATGGAAATGGGAAAGGAGAAGAAACAAGGAGACCGTGTGTGGGATGGGGTGGGGGTGGGGGGTGGGGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCATTGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTACTTGTTCTTGATACTTACTTTTATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTC</genome_strand>
        <mrna_strand>TTCTTGCTGAGATCTAGAGACAAATCCCTAAAACAAAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATG.........................................................................................TGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCTTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAGGCGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACACCACTGCTTTTAAGGAAGTGGCAATCATTCGTCATCCCCGTGTGGGTGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319687" ref_strand="+" ref_description="SGN-E319687 [cTOB-12-J22]">
      <seq>ttgctgagatctagagacaaagccctaaaactaaaaagcaaaaatggcggaagagaaggatcccacttctataccactaagtcaagcttctgaagatcctgaagaccccatcaaatctactcctgcttcacccaattcttctacccgcaaggcttgctgttattttcttcaaagttgggtatctaagaagtttatgactggatgtgtggttctcttccctgtggcggttacattctttgtgacatggtggtttattcagtttgttgatggtttcttcagtccactatatgaacaacttggcattgacatatttggactaggatttgtcacatctcttgtttttgtattcttagttggagtttttgtttcatcctggctgggtgctactgttttttggattggggaatggattattaaacgaatgccatttgtcagacacttatattcggcttcaaagcagatcagttctgcagtgtctccagatcaaaacaccaccgcttttaaggaagtggcaattattcgtcatccccgtgtgggggaatatgcttttggttttataacatcatcagttaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="72821" stop="68389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72521" g_stop="72371" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70730" g_stop="70678" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="204" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70677" i_stop="70589" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.452" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70588" g_stop="70479" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="314" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70478" i_stop="69551" i_length="928">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69550" g_stop="69383" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="482" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69382" i_stop="68783" i_length="600">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68782" g_stop="68689" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="576" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E319687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72521" e_stop="72371"/>
          <exon e_start="70730" e_stop="70678"/>
          <exon e_start="70588" e_stop="70479"/>
          <exon e_start="69550" e_stop="69383"/>
          <exon e_start="68782" e_stop="68689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAGGTCAGTTTTTCTTTCTAAAAGCTGTCTGATTTTTTGAGGTTTTAGAGGAAATTTACTCTTATCCTTGAAGCTAACAGAGATTATGAAGAAAAGGGGAGATGGGTTTTTGTGTTTGGTACAGGAAGTGTATTTTCTTGATTTTGAAAATATGGGAAATGGAGAAGGGATTGGAAAGAATGGCGAAAATGGGGAAATGGATAGTTGTGTTTGCCGCAGGACATGGACAAACTTGTTGAAAAGTATTGAGTTTTCGATATTTTCTTTTTTGGGTTCAAAGGGTAGTGTATATATTTACAATTTATGAATTACCAATTCGAATAAATGCATTTCTCGTTTCCATAGTTTTTGAAGTTGAAGCTTGAAAAATTGAGTTGTTAAAGTTGTGTTTGGACTTGCATTTTACTTGGGAAAAAATAGGATTTTTGTGAGTGGAAGTGAAATTTCTTAATTTCTACCAATTGCAAATATTTGAAAGATAAGAATTTCATGGCCAAATAGATATTTGGGGATAAATTGTCAAAATCTGATCCAAAATCTATGCTAAGTGTGCGGAGAATATTGGTTTTGAAGTAGACACAATTGATTCTTAAAATGAGGTTTTGATGTTTTTTCGTCTTATATACCTGCTCATGTACAATGTGGTTTGTATTTCTTTCACTTGGGTTGGGAGTTATCAAATAGTTAGAGTCAATTTATGCACAAAAAAGAAGGTACATTCTAATAATCTGAATGATGGGTTAATTTTGATATGATCAAAGTCACAGATTTTGTGCATCCTTATAAGAAAAAAAAGGTCATAGATTTTGTGTATCCTTGTAAAAGAAAAAGGTCAATAGATTTTGTGCATCTTATCTACTTATGGGATGTAGTTGGTAATTTGGGTTGGGGTCAAACTTATTAATTTAGCATCAGCCTATGCTAACATACATTCTTGCGTTTTGGTTTTCAAATTGATGTGATAGAGAGATATTATTGTGATTAACTATGTTGCTCGAACTTTTCAAATCCTTCAAATTTCAGTGCTTTTTTTGAGGATCCGACACGGTTGCGCAACATTTTTGGAGAGTCTAAGCAAAATAAGCTACCTAAATCTGTTTGATTTTATATTGGAAGAAAGTTATTTGAACAAGTTTTTAAAAAGAGATGAAGAGTTTTAAAGACCGTTCAACAAAACTTGAATCCGAAAAAGAAGTTCAAACTAGTAAAGAAGTGGTCCAAGTCAGAATAAATGATTTAAGAAAATCCAGGTTCTTTGGGGAGTAAAACAGTATATTTACTTGTCCTTTTCCGACCCAATGTACTAATATATATTCTACATATACTTATACGAAAAGAATCTTCAAATTGGAAAACAAGTTGACACATGAGAACAAATAATTTAGAAAATCCAGGTTCTCTAGAGGGGAACTGTTTGATAGACACCTGAGCTGTATATTCAATCTCGAGTCCTTTTAATGCCAATTGTACTCCAATATATTCAGTCTGGAATTTACTTTGTTTTTTGTGCATGTATAGAGAAGCTCCTATGAGAAAAGGACATATTTAAGCACTCCTCTATATTTAAGCATTCCTCTCTATACATATTCCTGTAGGCAGTTTACTTGTATATATCTTAATTGTTTTTCATACCTCTTTTTCAGGCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATGGTAATTTCTTATATCTATGTTGCGTTACCAATTTTAATAGGTTTTGGCTAACTTTGAATCCGTAACAACTCCAAAATTTGAAATTGCAGTGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTGGTAAGTCCAATTTTCCTACATTTTGATAGCTGCAGTTAGTTTCCTGTATTGGTTTATCCTGCTTCTTGATACTTAGTAGTTCAATACCCTGCATATTCAAGGCTCACCTCGTATTTTCATTTTCAGATATTTCATTATCCTGCATCACTGCAACTTCACCAAATAATATTGCAAATTGTTCTTTAAAATTGAGCTTATCAGCTGCATATATCTCTTTGTGAACATGTAAAAAGTTACTTTACATGTTGAGGAGAAAAGTAATGAAATGCATTATAAACTTTCTTTACTTACTGTAGTGAAGAGTCGGAGCATTATGAGAAAGAATAAGTTTTGGTGATTATATTTTCTTGTCTTGTCTTCATGATGGAAGTACAATTTTGTTTCTGGTATCTGAAGATTTCAGTCAGGGGCTTCAAAAAGGATATTGCTTTCAGCATACAAAATTACAACCAACTATGTCCAGCCATATAAGTCTAAGATGCTCGTGGTTGACCTGGCATAACTACAAATAACTAGAAAAATAGCCATTAATTGTGCTTGCTTCTTTTAACATTGTGTTTAGGGTTTAGCCTTCTCTGACTAACTCGTATGAATTGCTTTGCTCTTATAAATGTGATGTTGATATCAGTGTATATGTAATAATACACTTCTCTTTTCCTGAGTTGTAAATGCCTCTCACGTGTGCGGAAGCCATTGATGTCTATTCTACATGATCAAATATCTAATATTCATTAAGTGTAGAACTTCAGCTGGTTTTTGACTGTCCATTATGTTTTGTGTTATCTTTCTATGTTTCATGCATGATTGATAAATCTCATGTTCCATGCATGATTTATGTGTTGTCCACCTTCCGATCTGTATTAAAAGTTGTTATCTATTGTATATTCCCCATATATCCTGATCTTTCGGACATTTGTTGTTGGTGCAGGACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAGGTAAAGTTACATTTTTCTTCTTCTGAAGAGCACAATGATGAAATGAGACTTACCTTCCATTTGTTAAGGGGAAAGGCAAGGCAAGGAGTGGTGCACTTATCTAATTCACTTCTGGATCCATTTCTTGCTACTATCATCCTGAGATGGAAATGGGAAAGGAGAAGAAACAAGGAGACCGTGTGTGGGATGGGGTGGGGGTGGGGGGTGGGGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCATTGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTACTTGTTCTTGATACTTACTTTTATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCT</genome_strand>
        <mrna_strand>TTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATG.........................................................................................TGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374441" ref_strand="+" ref_description="SGN-E374441 [TUS-38-H6]">
      <seq>tgtctctgtgttgtttttgcaagtcttctctatttcttgctgagatctagagacaaagccctaaaactaaaaagcaaaaatggcggaagagaaggatcccacttctataccactaagtcaagcttctgaagatcctgaagaccccatcaaatctactcctgcttcacccaattcttctacccgcaaggcttgctgttattttcttcaaagttgggtatctaagaagtttatgactggatgtgtggttctcttccctgtggcggttacattctttgtgacatggtggtttattcagtttgttgatggtttcttcagtccactatatgaacaacttggcattgacatatttggactaggatttgtcacatctcttgtttttgtattcttagttggagtttttgtttcatcctggctgggtgctactgttttttggattggggaatggattattaaacgaatgccatttgtcagacacttatattcggcttcaaagcagatcagttctgcagtgtctccagatcaaaacaccaccgcttttaaggaagtggcaattattcgtcatccccgtgtgggggaatatgcttttggttttataacatcatcagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="72857" stop="68393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72557" g_stop="72371" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70730" g_stop="70678" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="240" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70677" i_stop="70589" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.452" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70588" g_stop="70479" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="350" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70478" i_stop="69551" i_length="928">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69550" g_stop="69383" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="518" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69382" i_stop="68783" i_length="600">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68782" g_stop="68693" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="608" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E374441" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72557" e_stop="72371"/>
          <exon e_start="70730" e_stop="70678"/>
          <exon e_start="70588" e_stop="70479"/>
          <exon e_start="69550" e_stop="69383"/>
          <exon e_start="68782" e_stop="68693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTCTGTGTTGTTTTTGCAAGTCTTCTCTATTTCTTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAGGTCAGTTTTTCTTTCTAAAAGCTGTCTGATTTTTTGAGGTTTTAGAGGAAATTTACTCTTATCCTTGAAGCTAACAGAGATTATGAAGAAAAGGGGAGATGGGTTTTTGTGTTTGGTACAGGAAGTGTATTTTCTTGATTTTGAAAATATGGGAAATGGAGAAGGGATTGGAAAGAATGGCGAAAATGGGGAAATGGATAGTTGTGTTTGCCGCAGGACATGGACAAACTTGTTGAAAAGTATTGAGTTTTCGATATTTTCTTTTTTGGGTTCAAAGGGTAGTGTATATATTTACAATTTATGAATTACCAATTCGAATAAATGCATTTCTCGTTTCCATAGTTTTTGAAGTTGAAGCTTGAAAAATTGAGTTGTTAAAGTTGTGTTTGGACTTGCATTTTACTTGGGAAAAAATAGGATTTTTGTGAGTGGAAGTGAAATTTCTTAATTTCTACCAATTGCAAATATTTGAAAGATAAGAATTTCATGGCCAAATAGATATTTGGGGATAAATTGTCAAAATCTGATCCAAAATCTATGCTAAGTGTGCGGAGAATATTGGTTTTGAAGTAGACACAATTGATTCTTAAAATGAGGTTTTGATGTTTTTTCGTCTTATATACCTGCTCATGTACAATGTGGTTTGTATTTCTTTCACTTGGGTTGGGAGTTATCAAATAGTTAGAGTCAATTTATGCACAAAAAAGAAGGTACATTCTAATAATCTGAATGATGGGTTAATTTTGATATGATCAAAGTCACAGATTTTGTGCATCCTTATAAGAAAAAAAAGGTCATAGATTTTGTGTATCCTTGTAAAAGAAAAAGGTCAATAGATTTTGTGCATCTTATCTACTTATGGGATGTAGTTGGTAATTTGGGTTGGGGTCAAACTTATTAATTTAGCATCAGCCTATGCTAACATACATTCTTGCGTTTTGGTTTTCAAATTGATGTGATAGAGAGATATTATTGTGATTAACTATGTTGCTCGAACTTTTCAAATCCTTCAAATTTCAGTGCTTTTTTTGAGGATCCGACACGGTTGCGCAACATTTTTGGAGAGTCTAAGCAAAATAAGCTACCTAAATCTGTTTGATTTTATATTGGAAGAAAGTTATTTGAACAAGTTTTTAAAAAGAGATGAAGAGTTTTAAAGACCGTTCAACAAAACTTGAATCCGAAAAAGAAGTTCAAACTAGTAAAGAAGTGGTCCAAGTCAGAATAAATGATTTAAGAAAATCCAGGTTCTTTGGGGAGTAAAACAGTATATTTACTTGTCCTTTTCCGACCCAATGTACTAATATATATTCTACATATACTTATACGAAAAGAATCTTCAAATTGGAAAACAAGTTGACACATGAGAACAAATAATTTAGAAAATCCAGGTTCTCTAGAGGGGAACTGTTTGATAGACACCTGAGCTGTATATTCAATCTCGAGTCCTTTTAATGCCAATTGTACTCCAATATATTCAGTCTGGAATTTACTTTGTTTTTTGTGCATGTATAGAGAAGCTCCTATGAGAAAAGGACATATTTAAGCACTCCTCTATATTTAAGCATTCCTCTCTATACATATTCCTGTAGGCAGTTTACTTGTATATATCTTAATTGTTTTTCATACCTCTTTTTCAGGCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATGGTAATTTCTTATATCTATGTTGCGTTACCAATTTTAATAGGTTTTGGCTAACTTTGAATCCGTAACAACTCCAAAATTTGAAATTGCAGTGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTGGTAAGTCCAATTTTCCTACATTTTGATAGCTGCAGTTAGTTTCCTGTATTGGTTTATCCTGCTTCTTGATACTTAGTAGTTCAATACCCTGCATATTCAAGGCTCACCTCGTATTTTCATTTTCAGATATTTCATTATCCTGCATCACTGCAACTTCACCAAATAATATTGCAAATTGTTCTTTAAAATTGAGCTTATCAGCTGCATATATCTCTTTGTGAACATGTAAAAAGTTACTTTACATGTTGAGGAGAAAAGTAATGAAATGCATTATAAACTTTCTTTACTTACTGTAGTGAAGAGTCGGAGCATTATGAGAAAGAATAAGTTTTGGTGATTATATTTTCTTGTCTTGTCTTCATGATGGAAGTACAATTTTGTTTCTGGTATCTGAAGATTTCAGTCAGGGGCTTCAAAAAGGATATTGCTTTCAGCATACAAAATTACAACCAACTATGTCCAGCCATATAAGTCTAAGATGCTCGTGGTTGACCTGGCATAACTACAAATAACTAGAAAAATAGCCATTAATTGTGCTTGCTTCTTTTAACATTGTGTTTAGGGTTTAGCCTTCTCTGACTAACTCGTATGAATTGCTTTGCTCTTATAAATGTGATGTTGATATCAGTGTATATGTAATAATACACTTCTCTTTTCCTGAGTTGTAAATGCCTCTCACGTGTGCGGAAGCCATTGATGTCTATTCTACATGATCAAATATCTAATATTCATTAAGTGTAGAACTTCAGCTGGTTTTTGACTGTCCATTATGTTTTGTGTTATCTTTCTATGTTTCATGCATGATTGATAAATCTCATGTTCCATGCATGATTTATGTGTTGTCCACCTTCCGATCTGTATTAAAAGTTGTTATCTATTGTATATTCCCCATATATCCTGATCTTTCGGACATTTGTTGTTGGTGCAGGACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAGGTAAAGTTACATTTTTCTTCTTCTGAAGAGCACAATGATGAAATGAGACTTACCTTCCATTTGTTAAGGGGAAAGGCAAGGCAAGGAGTGGTGCACTTATCTAATTCACTTCTGGATCCATTTCTTGCTACTATCATCCTGAGATGGAAATGGGAAAGGAGAAGAAACAAGGAGACCGTGTGTGGGATGGGGTGGGGGTGGGGGGTGGGGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCATTGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTACTTGTTCTTGATACTTACTTTTATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTA</genome_strand>
        <mrna_strand>TGTCTCTGTGTTGTTTTTGCAAGTCTTCTCTATTTCTTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATG.........................................................................................TGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200148" ref_strand="+" ref_description="SGN-E200148 [cLEB-7-L20]">
      <seq>gcacgaggtttttgcaagtcttctctatttcttgctgagatctagagacaaagccctaaaactaaaaagcaaaaatggcggaagagaaggatcccacttctataccactaagtcaagcttctgaagatcctgaagaccccatcaaatctactcctgcttcacccaattcttctacccgcaaggcttgctgttattttcttcaaagttgggtatctaagaagtttatgactggatgtgtggttctcttccctgtggcggttacattctttgtgacatggtggtttattcagtttgttgatggtttcttcagtccactatatgaacaacttggcattgacatatttggactaggatttgtcacatctcttgtttttgtattcttagttggagtttttgtttcatcctggctgggtgctactgttttttggattggggaatggattattaaacgaatgccatttgtcagacacttatattcggcttcaaagcagatcagttctgcagtgtctccagatcaaaacaccacctgctttaaggaagtggcaattattcgtcatccccgtgtgggggaatatgcttttggttttataacatcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="72845" stop="68397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72552" g_stop="72371" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70730" g_stop="70678" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="235" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70677" i_stop="70589" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.452" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70588" g_stop="70479" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="345" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70478" i_stop="69551" i_length="928">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69550" g_stop="69383" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="513" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69382" i_stop="68783" i_length="600">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68782" g_stop="68697" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="599" r_length="86" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E200148" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72552" e_stop="72371"/>
          <exon e_start="70730" e_stop="70678"/>
          <exon e_start="70588" e_stop="70479"/>
          <exon e_start="69550" e_stop="69383"/>
          <exon e_start="68782" e_stop="68697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTTGTTTTTGCAAGTCTTCTCTATTTCTTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAGGTCAGTTTTTCTTTCTAAAAGCTGTCTGATTTTTTGAGGTTTTAGAGGAAATTTACTCTTATCCTTGAAGCTAACAGAGATTATGAAGAAAAGGGGAGATGGGTTTTTGTGTTTGGTACAGGAAGTGTATTTTCTTGATTTTGAAAATATGGGAAATGGAGAAGGGATTGGAAAGAATGGCGAAAATGGGGAAATGGATAGTTGTGTTTGCCGCAGGACATGGACAAACTTGTTGAAAAGTATTGAGTTTTCGATATTTTCTTTTTTGGGTTCAAAGGGTAGTGTATATATTTACAATTTATGAATTACCAATTCGAATAAATGCATTTCTCGTTTCCATAGTTTTTGAAGTTGAAGCTTGAAAAATTGAGTTGTTAAAGTTGTGTTTGGACTTGCATTTTACTTGGGAAAAAATAGGATTTTTGTGAGTGGAAGTGAAATTTCTTAATTTCTACCAATTGCAAATATTTGAAAGATAAGAATTTCATGGCCAAATAGATATTTGGGGATAAATTGTCAAAATCTGATCCAAAATCTATGCTAAGTGTGCGGAGAATATTGGTTTTGAAGTAGACACAATTGATTCTTAAAATGAGGTTTTGATGTTTTTTCGTCTTATATACCTGCTCATGTACAATGTGGTTTGTATTTCTTTCACTTGGGTTGGGAGTTATCAAATAGTTAGAGTCAATTTATGCACAAAAAAGAAGGTACATTCTAATAATCTGAATGATGGGTTAATTTTGATATGATCAAAGTCACAGATTTTGTGCATCCTTATAAGAAAAAAAAGGTCATAGATTTTGTGTATCCTTGTAAAAGAAAAAGGTCAATAGATTTTGTGCATCTTATCTACTTATGGGATGTAGTTGGTAATTTGGGTTGGGGTCAAACTTATTAATTTAGCATCAGCCTATGCTAACATACATTCTTGCGTTTTGGTTTTCAAATTGATGTGATAGAGAGATATTATTGTGATTAACTATGTTGCTCGAACTTTTCAAATCCTTCAAATTTCAGTGCTTTTTTTGAGGATCCGACACGGTTGCGCAACATTTTTGGAGAGTCTAAGCAAAATAAGCTACCTAAATCTGTTTGATTTTATATTGGAAGAAAGTTATTTGAACAAGTTTTTAAAAAGAGATGAAGAGTTTTAAAGACCGTTCAACAAAACTTGAATCCGAAAAAGAAGTTCAAACTAGTAAAGAAGTGGTCCAAGTCAGAATAAATGATTTAAGAAAATCCAGGTTCTTTGGGGAGTAAAACAGTATATTTACTTGTCCTTTTCCGACCCAATGTACTAATATATATTCTACATATACTTATACGAAAAGAATCTTCAAATTGGAAAACAAGTTGACACATGAGAACAAATAATTTAGAAAATCCAGGTTCTCTAGAGGGGAACTGTTTGATAGACACCTGAGCTGTATATTCAATCTCGAGTCCTTTTAATGCCAATTGTACTCCAATATATTCAGTCTGGAATTTACTTTGTTTTTTGTGCATGTATAGAGAAGCTCCTATGAGAAAAGGACATATTTAAGCACTCCTCTATATTTAAGCATTCCTCTCTATACATATTCCTGTAGGCAGTTTACTTGTATATATCTTAATTGTTTTTCATACCTCTTTTTCAGGCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATGGTAATTTCTTATATCTATGTTGCGTTACCAATTTTAATAGGTTTTGGCTAACTTTGAATCCGTAACAACTCCAAAATTTGAAATTGCAGTGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTGGTAAGTCCAATTTTCCTACATTTTGATAGCTGCAGTTAGTTTCCTGTATTGGTTTATCCTGCTTCTTGATACTTAGTAGTTCAATACCCTGCATATTCAAGGCTCACCTCGTATTTTCATTTTCAGATATTTCATTATCCTGCATCACTGCAACTTCACCAAATAATATTGCAAATTGTTCTTTAAAATTGAGCTTATCAGCTGCATATATCTCTTTGTGAACATGTAAAAAGTTACTTTACATGTTGAGGAGAAAAGTAATGAAATGCATTATAAACTTTCTTTACTTACTGTAGTGAAGAGTCGGAGCATTATGAGAAAGAATAAGTTTTGGTGATTATATTTTCTTGTCTTGTCTTCATGATGGAAGTACAATTTTGTTTCTGGTATCTGAAGATTTCAGTCAGGGGCTTCAAAAAGGATATTGCTTTCAGCATACAAAATTACAACCAACTATGTCCAGCCATATAAGTCTAAGATGCTCGTGGTTGACCTGGCATAACTACAAATAACTAGAAAAATAGCCATTAATTGTGCTTGCTTCTTTTAACATTGTGTTTAGGGTTTAGCCTTCTCTGACTAACTCGTATGAATTGCTTTGCTCTTATAAATGTGATGTTGATATCAGTGTATATGTAATAATACACTTCTCTTTTCCTGAGTTGTAAATGCCTCTCACGTGTGCGGAAGCCATTGATGTCTATTCTACATGATCAAATATCTAATATTCATTAAGTGTAGAACTTCAGCTGGTTTTTGACTGTCCATTATGTTTTGTGTTATCTTTCTATGTTTCATGCATGATTGATAAATCTCATGTTCCATGCATGATTTATGTGTTGTCCACCTTCCGATCTGTATTAAAAGTTGTTATCTATTGTATATTCCCCATATATCCTGATCTTTCGGACATTTGTTGTTGGTGCAGGACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAGGTAAAGTTACATTTTTCTTCTTCTGAAGAGCACAATGATGAAATGAGACTTACCTTCCATTTGTTAAGGGGAAAGGCAAGGCAAGGAGTGGTGCACTTATCTAATTCACTTCTGGATCCATTTCTTGCTACTATCATCCTGAGATGGAAATGGGAAAGGAGAAGAAACAAGGAGACCGTGTGTGGGATGGGGTGGGGGTGGGGGGTGGGGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCATTGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTACTTGTTCTTGATACTTACTTTTATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCA</genome_strand>
        <mrna_strand>GCACGAGGTTTTTGCAAGTCTTCTCTATTTCTTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATG.........................................................................................TGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACACCACCTGCTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301835" ref_strand="+" ref_description="SGN-E301835 [cLEW-25-P12]">
      <seq>acaaagccctaaaactaaaaagcaaaaatggcggaagagaaggatcccacttctataccactaagtcaagcttctgaagatcctgaagaccccatcaaatctactcctgcttcacccaattcttctacccgcaaggcttgctgttattttcttcaaagttgggtatctaagaagtttatgactggatgtgtggttctcttccctgtggcggttacattctttgtgacatggtggtttattcagtttgttgatggtttcttcagtccactatatgaacaacttggcattgacatatttggactaggatttgtcacatctctcgtttttgtattcttagttggagtttttgtttcatcctggctgggtgctactgttttttggattggggaatggattattaaacgaatgccatttgtcagacacttatattcggcttcaaagcagatcagttctgcagtgtctccagatcaaaacaccaccgcttttaaggaagtggcaattattcgtcatccccgtgtgggggaatatgcttttggttttataacatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="72805" stop="68398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72505" g_stop="72371" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70730" g_stop="70678" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="188" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70677" i_stop="70589" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.452" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70588" g_stop="70479" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="298" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70478" i_stop="69551" i_length="928">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69550" g_stop="69383" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="466" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69382" i_stop="68783" i_length="600">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68782" g_stop="68698" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="551" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E301835" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72505" e_stop="72371"/>
          <exon e_start="70730" e_stop="70678"/>
          <exon e_start="70588" e_stop="70479"/>
          <exon e_start="69550" e_stop="69383"/>
          <exon e_start="68782" e_stop="68698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAGGTCAGTTTTTCTTTCTAAAAGCTGTCTGATTTTTTGAGGTTTTAGAGGAAATTTACTCTTATCCTTGAAGCTAACAGAGATTATGAAGAAAAGGGGAGATGGGTTTTTGTGTTTGGTACAGGAAGTGTATTTTCTTGATTTTGAAAATATGGGAAATGGAGAAGGGATTGGAAAGAATGGCGAAAATGGGGAAATGGATAGTTGTGTTTGCCGCAGGACATGGACAAACTTGTTGAAAAGTATTGAGTTTTCGATATTTTCTTTTTTGGGTTCAAAGGGTAGTGTATATATTTACAATTTATGAATTACCAATTCGAATAAATGCATTTCTCGTTTCCATAGTTTTTGAAGTTGAAGCTTGAAAAATTGAGTTGTTAAAGTTGTGTTTGGACTTGCATTTTACTTGGGAAAAAATAGGATTTTTGTGAGTGGAAGTGAAATTTCTTAATTTCTACCAATTGCAAATATTTGAAAGATAAGAATTTCATGGCCAAATAGATATTTGGGGATAAATTGTCAAAATCTGATCCAAAATCTATGCTAAGTGTGCGGAGAATATTGGTTTTGAAGTAGACACAATTGATTCTTAAAATGAGGTTTTGATGTTTTTTCGTCTTATATACCTGCTCATGTACAATGTGGTTTGTATTTCTTTCACTTGGGTTGGGAGTTATCAAATAGTTAGAGTCAATTTATGCACAAAAAAGAAGGTACATTCTAATAATCTGAATGATGGGTTAATTTTGATATGATCAAAGTCACAGATTTTGTGCATCCTTATAAGAAAAAAAAGGTCATAGATTTTGTGTATCCTTGTAAAAGAAAAAGGTCAATAGATTTTGTGCATCTTATCTACTTATGGGATGTAGTTGGTAATTTGGGTTGGGGTCAAACTTATTAATTTAGCATCAGCCTATGCTAACATACATTCTTGCGTTTTGGTTTTCAAATTGATGTGATAGAGAGATATTATTGTGATTAACTATGTTGCTCGAACTTTTCAAATCCTTCAAATTTCAGTGCTTTTTTTGAGGATCCGACACGGTTGCGCAACATTTTTGGAGAGTCTAAGCAAAATAAGCTACCTAAATCTGTTTGATTTTATATTGGAAGAAAGTTATTTGAACAAGTTTTTAAAAAGAGATGAAGAGTTTTAAAGACCGTTCAACAAAACTTGAATCCGAAAAAGAAGTTCAAACTAGTAAAGAAGTGGTCCAAGTCAGAATAAATGATTTAAGAAAATCCAGGTTCTTTGGGGAGTAAAACAGTATATTTACTTGTCCTTTTCCGACCCAATGTACTAATATATATTCTACATATACTTATACGAAAAGAATCTTCAAATTGGAAAACAAGTTGACACATGAGAACAAATAATTTAGAAAATCCAGGTTCTCTAGAGGGGAACTGTTTGATAGACACCTGAGCTGTATATTCAATCTCGAGTCCTTTTAATGCCAATTGTACTCCAATATATTCAGTCTGGAATTTACTTTGTTTTTTGTGCATGTATAGAGAAGCTCCTATGAGAAAAGGACATATTTAAGCACTCCTCTATATTTAAGCATTCCTCTCTATACATATTCCTGTAGGCAGTTTACTTGTATATATCTTAATTGTTTTTCATACCTCTTTTTCAGGCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATGGTAATTTCTTATATCTATGTTGCGTTACCAATTTTAATAGGTTTTGGCTAACTTTGAATCCGTAACAACTCCAAAATTTGAAATTGCAGTGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTGGTAAGTCCAATTTTCCTACATTTTGATAGCTGCAGTTAGTTTCCTGTATTGGTTTATCCTGCTTCTTGATACTTAGTAGTTCAATACCCTGCATATTCAAGGCTCACCTCGTATTTTCATTTTCAGATATTTCATTATCCTGCATCACTGCAACTTCACCAAATAATATTGCAAATTGTTCTTTAAAATTGAGCTTATCAGCTGCATATATCTCTTTGTGAACATGTAAAAAGTTACTTTACATGTTGAGGAGAAAAGTAATGAAATGCATTATAAACTTTCTTTACTTACTGTAGTGAAGAGTCGGAGCATTATGAGAAAGAATAAGTTTTGGTGATTATATTTTCTTGTCTTGTCTTCATGATGGAAGTACAATTTTGTTTCTGGTATCTGAAGATTTCAGTCAGGGGCTTCAAAAAGGATATTGCTTTCAGCATACAAAATTACAACCAACTATGTCCAGCCATATAAGTCTAAGATGCTCGTGGTTGACCTGGCATAACTACAAATAACTAGAAAAATAGCCATTAATTGTGCTTGCTTCTTTTAACATTGTGTTTAGGGTTTAGCCTTCTCTGACTAACTCGTATGAATTGCTTTGCTCTTATAAATGTGATGTTGATATCAGTGTATATGTAATAATACACTTCTCTTTTCCTGAGTTGTAAATGCCTCTCACGTGTGCGGAAGCCATTGATGTCTATTCTACATGATCAAATATCTAATATTCATTAAGTGTAGAACTTCAGCTGGTTTTTGACTGTCCATTATGTTTTGTGTTATCTTTCTATGTTTCATGCATGATTGATAAATCTCATGTTCCATGCATGATTTATGTGTTGTCCACCTTCCGATCTGTATTAAAAGTTGTTATCTATTGTATATTCCCCATATATCCTGATCTTTCGGACATTTGTTGTTGGTGCAGGACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAGGTAAAGTTACATTTTTCTTCTTCTGAAGAGCACAATGATGAAATGAGACTTACCTTCCATTTGTTAAGGGGAAAGGCAAGGCAAGGAGTGGTGCACTTATCTAATTCACTTCTGGATCCATTTCTTGCTACTATCATCCTGAGATGGAAATGGGAAAGGAGAAGAAACAAGGAGACCGTGTGTGGGATGGGGTGGGGGTGGGGGGTGGGGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCATTGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTACTTGTTCTTGATACTTACTTTTATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATC</genome_strand>
        <mrna_strand>ACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATG.........................................................................................TGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGGATTTGTCACATCTCTCGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200125" ref_strand="+" ref_description="SGN-E200125 [cLEB-7-L21]">
      <seq>gcacgaggtttttgcaagtcttctctatttcttgctgagatctagagacaaagccctaaaactaaaaagcaaaaatggcggaagagaaggatcccacttctataccactaagtcaagcttctgaagatcctgaagaccccatcaaatctactcctgcttcacccaattcttctacccgcaaggcttgctgttattttcttcaaagttgggtatctaagaagtttatgactggatgtgtggttctcttccctgtggcggttacattctttgtgacatggtggtttattcagtttgttgatggtttcttcagtccactatatgaacaacttggcattgacatatttggactaggatttgtcacatctcttgtttttgtattcttagttggagtttttgtttcatcctggctgggtgctactgttttttggattggggaatggattattaaacgaatgccatttgtcagacacttatattcggcttcaaagcagatcagttctgcagtgtctccagatcaaaacaccaccgcttttaaggaagtggcaattattcctcatccccgtgtgggggaatatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="72845" stop="68416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72552" g_stop="72371" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70730" g_stop="70678" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="235" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70677" i_stop="70589" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.452" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70588" g_stop="70479" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="345" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70478" i_stop="69551" i_length="928">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69550" g_stop="69383" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="513" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69382" i_stop="68783" i_length="600">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68782" g_stop="68716" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="580" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E200125" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72552" e_stop="72371"/>
          <exon e_start="70730" e_stop="70678"/>
          <exon e_start="70588" e_stop="70479"/>
          <exon e_start="69550" e_stop="69383"/>
          <exon e_start="68782" e_stop="68716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTTGTTTTTGCAAGTCTTCTCTATTTCTTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAGGTCAGTTTTTCTTTCTAAAAGCTGTCTGATTTTTTGAGGTTTTAGAGGAAATTTACTCTTATCCTTGAAGCTAACAGAGATTATGAAGAAAAGGGGAGATGGGTTTTTGTGTTTGGTACAGGAAGTGTATTTTCTTGATTTTGAAAATATGGGAAATGGAGAAGGGATTGGAAAGAATGGCGAAAATGGGGAAATGGATAGTTGTGTTTGCCGCAGGACATGGACAAACTTGTTGAAAAGTATTGAGTTTTCGATATTTTCTTTTTTGGGTTCAAAGGGTAGTGTATATATTTACAATTTATGAATTACCAATTCGAATAAATGCATTTCTCGTTTCCATAGTTTTTGAAGTTGAAGCTTGAAAAATTGAGTTGTTAAAGTTGTGTTTGGACTTGCATTTTACTTGGGAAAAAATAGGATTTTTGTGAGTGGAAGTGAAATTTCTTAATTTCTACCAATTGCAAATATTTGAAAGATAAGAATTTCATGGCCAAATAGATATTTGGGGATAAATTGTCAAAATCTGATCCAAAATCTATGCTAAGTGTGCGGAGAATATTGGTTTTGAAGTAGACACAATTGATTCTTAAAATGAGGTTTTGATGTTTTTTCGTCTTATATACCTGCTCATGTACAATGTGGTTTGTATTTCTTTCACTTGGGTTGGGAGTTATCAAATAGTTAGAGTCAATTTATGCACAAAAAAGAAGGTACATTCTAATAATCTGAATGATGGGTTAATTTTGATATGATCAAAGTCACAGATTTTGTGCATCCTTATAAGAAAAAAAAGGTCATAGATTTTGTGTATCCTTGTAAAAGAAAAAGGTCAATAGATTTTGTGCATCTTATCTACTTATGGGATGTAGTTGGTAATTTGGGTTGGGGTCAAACTTATTAATTTAGCATCAGCCTATGCTAACATACATTCTTGCGTTTTGGTTTTCAAATTGATGTGATAGAGAGATATTATTGTGATTAACTATGTTGCTCGAACTTTTCAAATCCTTCAAATTTCAGTGCTTTTTTTGAGGATCCGACACGGTTGCGCAACATTTTTGGAGAGTCTAAGCAAAATAAGCTACCTAAATCTGTTTGATTTTATATTGGAAGAAAGTTATTTGAACAAGTTTTTAAAAAGAGATGAAGAGTTTTAAAGACCGTTCAACAAAACTTGAATCCGAAAAAGAAGTTCAAACTAGTAAAGAAGTGGTCCAAGTCAGAATAAATGATTTAAGAAAATCCAGGTTCTTTGGGGAGTAAAACAGTATATTTACTTGTCCTTTTCCGACCCAATGTACTAATATATATTCTACATATACTTATACGAAAAGAATCTTCAAATTGGAAAACAAGTTGACACATGAGAACAAATAATTTAGAAAATCCAGGTTCTCTAGAGGGGAACTGTTTGATAGACACCTGAGCTGTATATTCAATCTCGAGTCCTTTTAATGCCAATTGTACTCCAATATATTCAGTCTGGAATTTACTTTGTTTTTTGTGCATGTATAGAGAAGCTCCTATGAGAAAAGGACATATTTAAGCACTCCTCTATATTTAAGCATTCCTCTCTATACATATTCCTGTAGGCAGTTTACTTGTATATATCTTAATTGTTTTTCATACCTCTTTTTCAGGCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATGGTAATTTCTTATATCTATGTTGCGTTACCAATTTTAATAGGTTTTGGCTAACTTTGAATCCGTAACAACTCCAAAATTTGAAATTGCAGTGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTGGTAAGTCCAATTTTCCTACATTTTGATAGCTGCAGTTAGTTTCCTGTATTGGTTTATCCTGCTTCTTGATACTTAGTAGTTCAATACCCTGCATATTCAAGGCTCACCTCGTATTTTCATTTTCAGATATTTCATTATCCTGCATCACTGCAACTTCACCAAATAATATTGCAAATTGTTCTTTAAAATTGAGCTTATCAGCTGCATATATCTCTTTGTGAACATGTAAAAAGTTACTTTACATGTTGAGGAGAAAAGTAATGAAATGCATTATAAACTTTCTTTACTTACTGTAGTGAAGAGTCGGAGCATTATGAGAAAGAATAAGTTTTGGTGATTATATTTTCTTGTCTTGTCTTCATGATGGAAGTACAATTTTGTTTCTGGTATCTGAAGATTTCAGTCAGGGGCTTCAAAAAGGATATTGCTTTCAGCATACAAAATTACAACCAACTATGTCCAGCCATATAAGTCTAAGATGCTCGTGGTTGACCTGGCATAACTACAAATAACTAGAAAAATAGCCATTAATTGTGCTTGCTTCTTTTAACATTGTGTTTAGGGTTTAGCCTTCTCTGACTAACTCGTATGAATTGCTTTGCTCTTATAAATGTGATGTTGATATCAGTGTATATGTAATAATACACTTCTCTTTTCCTGAGTTGTAAATGCCTCTCACGTGTGCGGAAGCCATTGATGTCTATTCTACATGATCAAATATCTAATATTCATTAAGTGTAGAACTTCAGCTGGTTTTTGACTGTCCATTATGTTTTGTGTTATCTTTCTATGTTTCATGCATGATTGATAAATCTCATGTTCCATGCATGATTTATGTGTTGTCCACCTTCCGATCTGTATTAAAAGTTGTTATCTATTGTATATTCCCCATATATCCTGATCTTTCGGACATTTGTTGTTGGTGCAGGACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAGGTAAAGTTACATTTTTCTTCTTCTGAAGAGCACAATGATGAAATGAGACTTACCTTCCATTTGTTAAGGGGAAAGGCAAGGCAAGGAGTGGTGCACTTATCTAATTCACTTCTGGATCCATTTCTTGCTACTATCATCCTGAGATGGAAATGGGAAAGGAGAAGAAACAAGGAGACCGTGTGTGGGATGGGGTGGGGGTGGGGGGTGGGGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCATTGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTACTTGTTCTTGATACTTACTTTTATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTT</genome_strand>
        <mrna_strand>GCACGAGGTTTTTGCAAGTCTTCTCTATTTCTTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATG.........................................................................................TGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCCTCATCCCCGTGTGGGGGAATATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319243" ref_strand="+" ref_description="SGN-E319243 [cTOB-16-G19]">
      <seq>tgagatctagagacaaagcccgaaaactaaaaagcaaaaatggcggaagagaaggatcccacttctataccactaagtcaagcttctgaagatcctgaagaccccatcaaatctactcctgcttcacccaattcttctacccgcaaggcttgctgttattttcttcaaagttgggtatctaagaagtttatgactggatgtgtggttctcttccctgtggcggttacattctttgtgacatggtggtttattcagtttgttgatggtttcttcagtccactatatgaacaacttggcattgacatatttggactaggatttgtcacatctcttgtttttgtattcttagttggagtttttgtttcatcctggctgggtgctactgttttttggattggggaatggattattaaacgaatgccatttgtcagacacttatattcggcttcaaagcaaatcagttctgcagtgtctccagatcaaaacaccaccgcttttaaagaagtggcaattattcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="72817" stop="68441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72517" g_stop="72371" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70730" g_stop="70678" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="200" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70677" i_stop="70589" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.452" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70588" g_stop="70479" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="310" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70478" i_stop="69551" i_length="928">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69550" g_stop="69383" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="478" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69382" i_stop="68783" i_length="600">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68782" g_stop="68741" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="520" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E319243" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72517" e_stop="72371"/>
          <exon e_start="70730" e_stop="70678"/>
          <exon e_start="70588" e_stop="70479"/>
          <exon e_start="69550" e_stop="69383"/>
          <exon e_start="68782" e_stop="68741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAGGTCAGTTTTTCTTTCTAAAAGCTGTCTGATTTTTTGAGGTTTTAGAGGAAATTTACTCTTATCCTTGAAGCTAACAGAGATTATGAAGAAAAGGGGAGATGGGTTTTTGTGTTTGGTACAGGAAGTGTATTTTCTTGATTTTGAAAATATGGGAAATGGAGAAGGGATTGGAAAGAATGGCGAAAATGGGGAAATGGATAGTTGTGTTTGCCGCAGGACATGGACAAACTTGTTGAAAAGTATTGAGTTTTCGATATTTTCTTTTTTGGGTTCAAAGGGTAGTGTATATATTTACAATTTATGAATTACCAATTCGAATAAATGCATTTCTCGTTTCCATAGTTTTTGAAGTTGAAGCTTGAAAAATTGAGTTGTTAAAGTTGTGTTTGGACTTGCATTTTACTTGGGAAAAAATAGGATTTTTGTGAGTGGAAGTGAAATTTCTTAATTTCTACCAATTGCAAATATTTGAAAGATAAGAATTTCATGGCCAAATAGATATTTGGGGATAAATTGTCAAAATCTGATCCAAAATCTATGCTAAGTGTGCGGAGAATATTGGTTTTGAAGTAGACACAATTGATTCTTAAAATGAGGTTTTGATGTTTTTTCGTCTTATATACCTGCTCATGTACAATGTGGTTTGTATTTCTTTCACTTGGGTTGGGAGTTATCAAATAGTTAGAGTCAATTTATGCACAAAAAAGAAGGTACATTCTAATAATCTGAATGATGGGTTAATTTTGATATGATCAAAGTCACAGATTTTGTGCATCCTTATAAGAAAAAAAAGGTCATAGATTTTGTGTATCCTTGTAAAAGAAAAAGGTCAATAGATTTTGTGCATCTTATCTACTTATGGGATGTAGTTGGTAATTTGGGTTGGGGTCAAACTTATTAATTTAGCATCAGCCTATGCTAACATACATTCTTGCGTTTTGGTTTTCAAATTGATGTGATAGAGAGATATTATTGTGATTAACTATGTTGCTCGAACTTTTCAAATCCTTCAAATTTCAGTGCTTTTTTTGAGGATCCGACACGGTTGCGCAACATTTTTGGAGAGTCTAAGCAAAATAAGCTACCTAAATCTGTTTGATTTTATATTGGAAGAAAGTTATTTGAACAAGTTTTTAAAAAGAGATGAAGAGTTTTAAAGACCGTTCAACAAAACTTGAATCCGAAAAAGAAGTTCAAACTAGTAAAGAAGTGGTCCAAGTCAGAATAAATGATTTAAGAAAATCCAGGTTCTTTGGGGAGTAAAACAGTATATTTACTTGTCCTTTTCCGACCCAATGTACTAATATATATTCTACATATACTTATACGAAAAGAATCTTCAAATTGGAAAACAAGTTGACACATGAGAACAAATAATTTAGAAAATCCAGGTTCTCTAGAGGGGAACTGTTTGATAGACACCTGAGCTGTATATTCAATCTCGAGTCCTTTTAATGCCAATTGTACTCCAATATATTCAGTCTGGAATTTACTTTGTTTTTTGTGCATGTATAGAGAAGCTCCTATGAGAAAAGGACATATTTAAGCACTCCTCTATATTTAAGCATTCCTCTCTATACATATTCCTGTAGGCAGTTTACTTGTATATATCTTAATTGTTTTTCATACCTCTTTTTCAGGCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATGGTAATTTCTTATATCTATGTTGCGTTACCAATTTTAATAGGTTTTGGCTAACTTTGAATCCGTAACAACTCCAAAATTTGAAATTGCAGTGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTGGTAAGTCCAATTTTCCTACATTTTGATAGCTGCAGTTAGTTTCCTGTATTGGTTTATCCTGCTTCTTGATACTTAGTAGTTCAATACCCTGCATATTCAAGGCTCACCTCGTATTTTCATTTTCAGATATTTCATTATCCTGCATCACTGCAACTTCACCAAATAATATTGCAAATTGTTCTTTAAAATTGAGCTTATCAGCTGCATATATCTCTTTGTGAACATGTAAAAAGTTACTTTACATGTTGAGGAGAAAAGTAATGAAATGCATTATAAACTTTCTTTACTTACTGTAGTGAAGAGTCGGAGCATTATGAGAAAGAATAAGTTTTGGTGATTATATTTTCTTGTCTTGTCTTCATGATGGAAGTACAATTTTGTTTCTGGTATCTGAAGATTTCAGTCAGGGGCTTCAAAAAGGATATTGCTTTCAGCATACAAAATTACAACCAACTATGTCCAGCCATATAAGTCTAAGATGCTCGTGGTTGACCTGGCATAACTACAAATAACTAGAAAAATAGCCATTAATTGTGCTTGCTTCTTTTAACATTGTGTTTAGGGTTTAGCCTTCTCTGACTAACTCGTATGAATTGCTTTGCTCTTATAAATGTGATGTTGATATCAGTGTATATGTAATAATACACTTCTCTTTTCCTGAGTTGTAAATGCCTCTCACGTGTGCGGAAGCCATTGATGTCTATTCTACATGATCAAATATCTAATATTCATTAAGTGTAGAACTTCAGCTGGTTTTTGACTGTCCATTATGTTTTGTGTTATCTTTCTATGTTTCATGCATGATTGATAAATCTCATGTTCCATGCATGATTTATGTGTTGTCCACCTTCCGATCTGTATTAAAAGTTGTTATCTATTGTATATTCCCCATATATCCTGATCTTTCGGACATTTGTTGTTGGTGCAGGACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAGGTAAAGTTACATTTTTCTTCTTCTGAAGAGCACAATGATGAAATGAGACTTACCTTCCATTTGTTAAGGGGAAAGGCAAGGCAAGGAGTGGTGCACTTATCTAATTCACTTCTGGATCCATTTCTTGCTACTATCATCCTGAGATGGAAATGGGAAAGGAGAAGAAACAAGGAGACCGTGTGTGGGATGGGGTGGGGGTGGGGGGTGGGGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCATTGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTACTTGTTCTTGATACTTACTTTTATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTC</genome_strand>
        <mrna_strand>TGAGATCTAGAGACAAAGCCCGAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATG.........................................................................................TGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAAATCAGTTCTGCAGTGTCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACACCACCGCTTTTAAAGAAGTGGCAATTATTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208296" ref_strand="+" ref_description="SGN-E208296 [cLEC-37-L20]">
      <seq>tgtctctgtgttgtttttgcaagtcttctctatttcttgctgagatctagagacaaagccctaaaactaaaaagcaaaaatggcggaagagaaggatcccacttctataccactaagtcaagcttctgaagatcctgaagaccccatcaaatctactcctgcttcacccaattcttctacccgcaaggcttgctgttattttcttcaaagttgggtatctaagaagtttatgactggatgtgtggttctcttccctgtggcggttacattctttgtgacatggtggtttattcagtttgttgatggtttcttcagtccactatatgaacaacttggcattgacatatttggactaggatttgtcacatctcttgtttttgtattcttagttggagtttttgtttcatcctggctgggtgctactgttttttggattggggaatggattattaaacgaatgccatttgtcagacacttatattcggcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="72857" stop="69112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72557" g_stop="72371" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70730" g_stop="70678" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="240" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70677" i_stop="70589" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.452" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70588" g_stop="70479" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="350" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70478" i_stop="69551" i_length="928">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69550" g_stop="69412" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="489" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E208296" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72557" e_stop="72371"/>
          <exon e_start="70730" e_stop="70678"/>
          <exon e_start="70588" e_stop="70479"/>
          <exon e_start="69550" e_stop="69412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTCTGTGTTGTTTTTGCAAGTCTTCTCTATTTCTTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAGGTCAGTTTTTCTTTCTAAAAGCTGTCTGATTTTTTGAGGTTTTAGAGGAAATTTACTCTTATCCTTGAAGCTAACAGAGATTATGAAGAAAAGGGGAGATGGGTTTTTGTGTTTGGTACAGGAAGTGTATTTTCTTGATTTTGAAAATATGGGAAATGGAGAAGGGATTGGAAAGAATGGCGAAAATGGGGAAATGGATAGTTGTGTTTGCCGCAGGACATGGACAAACTTGTTGAAAAGTATTGAGTTTTCGATATTTTCTTTTTTGGGTTCAAAGGGTAGTGTATATATTTACAATTTATGAATTACCAATTCGAATAAATGCATTTCTCGTTTCCATAGTTTTTGAAGTTGAAGCTTGAAAAATTGAGTTGTTAAAGTTGTGTTTGGACTTGCATTTTACTTGGGAAAAAATAGGATTTTTGTGAGTGGAAGTGAAATTTCTTAATTTCTACCAATTGCAAATATTTGAAAGATAAGAATTTCATGGCCAAATAGATATTTGGGGATAAATTGTCAAAATCTGATCCAAAATCTATGCTAAGTGTGCGGAGAATATTGGTTTTGAAGTAGACACAATTGATTCTTAAAATGAGGTTTTGATGTTTTTTCGTCTTATATACCTGCTCATGTACAATGTGGTTTGTATTTCTTTCACTTGGGTTGGGAGTTATCAAATAGTTAGAGTCAATTTATGCACAAAAAAGAAGGTACATTCTAATAATCTGAATGATGGGTTAATTTTGATATGATCAAAGTCACAGATTTTGTGCATCCTTATAAGAAAAAAAAGGTCATAGATTTTGTGTATCCTTGTAAAAGAAAAAGGTCAATAGATTTTGTGCATCTTATCTACTTATGGGATGTAGTTGGTAATTTGGGTTGGGGTCAAACTTATTAATTTAGCATCAGCCTATGCTAACATACATTCTTGCGTTTTGGTTTTCAAATTGATGTGATAGAGAGATATTATTGTGATTAACTATGTTGCTCGAACTTTTCAAATCCTTCAAATTTCAGTGCTTTTTTTGAGGATCCGACACGGTTGCGCAACATTTTTGGAGAGTCTAAGCAAAATAAGCTACCTAAATCTGTTTGATTTTATATTGGAAGAAAGTTATTTGAACAAGTTTTTAAAAAGAGATGAAGAGTTTTAAAGACCGTTCAACAAAACTTGAATCCGAAAAAGAAGTTCAAACTAGTAAAGAAGTGGTCCAAGTCAGAATAAATGATTTAAGAAAATCCAGGTTCTTTGGGGAGTAAAACAGTATATTTACTTGTCCTTTTCCGACCCAATGTACTAATATATATTCTACATATACTTATACGAAAAGAATCTTCAAATTGGAAAACAAGTTGACACATGAGAACAAATAATTTAGAAAATCCAGGTTCTCTAGAGGGGAACTGTTTGATAGACACCTGAGCTGTATATTCAATCTCGAGTCCTTTTAATGCCAATTGTACTCCAATATATTCAGTCTGGAATTTACTTTGTTTTTTGTGCATGTATAGAGAAGCTCCTATGAGAAAAGGACATATTTAAGCACTCCTCTATATTTAAGCATTCCTCTCTATACATATTCCTGTAGGCAGTTTACTTGTATATATCTTAATTGTTTTTCATACCTCTTTTTCAGGCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATGGTAATTTCTTATATCTATGTTGCGTTACCAATTTTAATAGGTTTTGGCTAACTTTGAATCCGTAACAACTCCAAAATTTGAAATTGCAGTGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTGGTAAGTCCAATTTTCCTACATTTTGATAGCTGCAGTTAGTTTCCTGTATTGGTTTATCCTGCTTCTTGATACTTAGTAGTTCAATACCCTGCATATTCAAGGCTCACCTCGTATTTTCATTTTCAGATATTTCATTATCCTGCATCACTGCAACTTCACCAAATAATATTGCAAATTGTTCTTTAAAATTGAGCTTATCAGCTGCATATATCTCTTTGTGAACATGTAAAAAGTTACTTTACATGTTGAGGAGAAAAGTAATGAAATGCATTATAAACTTTCTTTACTTACTGTAGTGAAGAGTCGGAGCATTATGAGAAAGAATAAGTTTTGGTGATTATATTTTCTTGTCTTGTCTTCATGATGGAAGTACAATTTTGTTTCTGGTATCTGAAGATTTCAGTCAGGGGCTTCAAAAAGGATATTGCTTTCAGCATACAAAATTACAACCAACTATGTCCAGCCATATAAGTCTAAGATGCTCGTGGTTGACCTGGCATAACTACAAATAACTAGAAAAATAGCCATTAATTGTGCTTGCTTCTTTTAACATTGTGTTTAGGGTTTAGCCTTCTCTGACTAACTCGTATGAATTGCTTTGCTCTTATAAATGTGATGTTGATATCAGTGTATATGTAATAATACACTTCTCTTTTCCTGAGTTGTAAATGCCTCTCACGTGTGCGGAAGCCATTGATGTCTATTCTACATGATCAAATATCTAATATTCATTAAGTGTAGAACTTCAGCTGGTTTTTGACTGTCCATTATGTTTTGTGTTATCTTTCTATGTTTCATGCATGATTGATAAATCTCATGTTCCATGCATGATTTATGTGTTGTCCACCTTCCGATCTGTATTAAAAGTTGTTATCTATTGTATATTCCCCATATATCCTGATCTTTCGGACATTTGTTGTTGGTGCAGGACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTC</genome_strand>
        <mrna_strand>TGTCTCTGTGTTGTTTTTGCAAGTCTTCTCTATTTCTTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATG.........................................................................................TGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255350" ref_strand="+" ref_description="SGN-E255350 [cLEG-30-M20]">
      <seq>tttacgaaggggaaaaataggtgggcaccttaccttacaagtctctgcttcagagtaatatcatctcagctgtctctgtgttgtttttgcaagtcttctctatttcttgctgagatctagagacaaagccctaaaactaaaaagcaaaaatggcggaagagaaggatcccacttctataccactaagtcaagcttctgaagatcctgaagaccccatcaaatctactcctgcttcacccaattcttctacccgcaaggcttgctgttattttcttcaaagttgggtatctaagaagtttatgactggatgtgtggttctcttccctgtggcggttacattctttgtgacatggtggtttattcagtttgttgatggtttcttcagtccactatatgaacaacttggcattgacatatttggactaggatttgtcacatctcttgtttttgtattcttagttggagtttttgtttcatcctggctgggtgctactgttttttggattggggaatggattattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="72927" stop="69147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72627" g_stop="72371" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70730" g_stop="70678" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="310" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70677" i_stop="70589" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.452" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70588" g_stop="70479" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="420" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70478" i_stop="69551" i_length="928">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69550" g_stop="69447" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="524" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E255350" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72627" e_stop="72371"/>
          <exon e_start="70730" e_stop="70678"/>
          <exon e_start="70588" e_stop="70479"/>
          <exon e_start="69550" e_stop="69447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACGAAGGGGAAAAATAGGTGGGCACCTTACCTTACAAGTCTCTTCTTCACAATAATATCATCTCAGCTGTCTCTGTGTTGTTTTTGCAAGTCTTCTCTATTTCTTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAGGTCAGTTTTTCTTTCTAAAAGCTGTCTGATTTTTTGAGGTTTTAGAGGAAATTTACTCTTATCCTTGAAGCTAACAGAGATTATGAAGAAAAGGGGAGATGGGTTTTTGTGTTTGGTACAGGAAGTGTATTTTCTTGATTTTGAAAATATGGGAAATGGAGAAGGGATTGGAAAGAATGGCGAAAATGGGGAAATGGATAGTTGTGTTTGCCGCAGGACATGGACAAACTTGTTGAAAAGTATTGAGTTTTCGATATTTTCTTTTTTGGGTTCAAAGGGTAGTGTATATATTTACAATTTATGAATTACCAATTCGAATAAATGCATTTCTCGTTTCCATAGTTTTTGAAGTTGAAGCTTGAAAAATTGAGTTGTTAAAGTTGTGTTTGGACTTGCATTTTACTTGGGAAAAAATAGGATTTTTGTGAGTGGAAGTGAAATTTCTTAATTTCTACCAATTGCAAATATTTGAAAGATAAGAATTTCATGGCCAAATAGATATTTGGGGATAAATTGTCAAAATCTGATCCAAAATCTATGCTAAGTGTGCGGAGAATATTGGTTTTGAAGTAGACACAATTGATTCTTAAAATGAGGTTTTGATGTTTTTTCGTCTTATATACCTGCTCATGTACAATGTGGTTTGTATTTCTTTCACTTGGGTTGGGAGTTATCAAATAGTTAGAGTCAATTTATGCACAAAAAAGAAGGTACATTCTAATAATCTGAATGATGGGTTAATTTTGATATGATCAAAGTCACAGATTTTGTGCATCCTTATAAGAAAAAAAAGGTCATAGATTTTGTGTATCCTTGTAAAAGAAAAAGGTCAATAGATTTTGTGCATCTTATCTACTTATGGGATGTAGTTGGTAATTTGGGTTGGGGTCAAACTTATTAATTTAGCATCAGCCTATGCTAACATACATTCTTGCGTTTTGGTTTTCAAATTGATGTGATAGAGAGATATTATTGTGATTAACTATGTTGCTCGAACTTTTCAAATCCTTCAAATTTCAGTGCTTTTTTTGAGGATCCGACACGGTTGCGCAACATTTTTGGAGAGTCTAAGCAAAATAAGCTACCTAAATCTGTTTGATTTTATATTGGAAGAAAGTTATTTGAACAAGTTTTTAAAAAGAGATGAAGAGTTTTAAAGACCGTTCAACAAAACTTGAATCCGAAAAAGAAGTTCAAACTAGTAAAGAAGTGGTCCAAGTCAGAATAAATGATTTAAGAAAATCCAGGTTCTTTGGGGAGTAAAACAGTATATTTACTTGTCCTTTTCCGACCCAATGTACTAATATATATTCTACATATACTTATACGAAAAGAATCTTCAAATTGGAAAACAAGTTGACACATGAGAACAAATAATTTAGAAAATCCAGGTTCTCTAGAGGGGAACTGTTTGATAGACACCTGAGCTGTATATTCAATCTCGAGTCCTTTTAATGCCAATTGTACTCCAATATATTCAGTCTGGAATTTACTTTGTTTTTTGTGCATGTATAGAGAAGCTCCTATGAGAAAAGGACATATTTAAGCACTCCTCTATATTTAAGCATTCCTCTCTATACATATTCCTGTAGGCAGTTTACTTGTATATATCTTAATTGTTTTTCATACCTCTTTTTCAGGCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATGGTAATTTCTTATATCTATGTTGCGTTACCAATTTTAATAGGTTTTGGCTAACTTTGAATCCGTAACAACTCCAAAATTTGAAATTGCAGTGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTGGTAAGTCCAATTTTCCTACATTTTGATAGCTGCAGTTAGTTTCCTGTATTGGTTTATCCTGCTTCTTGATACTTAGTAGTTCAATACCCTGCATATTCAAGGCTCACCTCGTATTTTCATTTTCAGATATTTCATTATCCTGCATCACTGCAACTTCACCAAATAATATTGCAAATTGTTCTTTAAAATTGAGCTTATCAGCTGCATATATCTCTTTGTGAACATGTAAAAAGTTACTTTACATGTTGAGGAGAAAAGTAATGAAATGCATTATAAACTTTCTTTACTTACTGTAGTGAAGAGTCGGAGCATTATGAGAAAGAATAAGTTTTGGTGATTATATTTTCTTGTCTTGTCTTCATGATGGAAGTACAATTTTGTTTCTGGTATCTGAAGATTTCAGTCAGGGGCTTCAAAAAGGATATTGCTTTCAGCATACAAAATTACAACCAACTATGTCCAGCCATATAAGTCTAAGATGCTCGTGGTTGACCTGGCATAACTACAAATAACTAGAAAAATAGCCATTAATTGTGCTTGCTTCTTTTAACATTGTGTTTAGGGTTTAGCCTTCTCTGACTAACTCGTATGAATTGCTTTGCTCTTATAAATGTGATGTTGATATCAGTGTATATGTAATAATACACTTCTCTTTTCCTGAGTTGTAAATGCCTCTCACGTGTGCGGAAGCCATTGATGTCTATTCTACATGATCAAATATCTAATATTCATTAAGTGTAGAACTTCAGCTGGTTTTTGACTGTCCATTATGTTTTGTGTTATCTTTCTATGTTTCATGCATGATTGATAAATCTCATGTTCCATGCATGATTTATGTGTTGTCCACCTTCCGATCTGTATTAAAAGTTGTTATCTATTGTATATTCCCCATATATCCTGATCTTTCGGACATTTGTTGTTGGTGCAGGACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAA</genome_strand>
        <mrna_strand>TTTACGAAGGGGAAAAATAGGTGGGCACCTTACCTTACAAGTCTCTGCTTCAGAGTAATATCATCTCAGCTGTCTCTGTGTTGTTTTTGCAAGTCTTCTCTATTTCTTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATG.........................................................................................TGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280103" ref_strand="-" ref_description="SGN-E280103 [cLEL-7-N6](-)">
      <seq>atggcggaagagaaggatcccacttctataccactaagtcaagcttctgaagatcctgaagaccccatcaaatctactcctgcttcacccaattattatacccgcaaggcttgctgttatttacttcaaagctgggtatctaagaagttaatgactggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="72778" stop="70379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72478" g_stop="72371" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.772" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70730" g_stop="70679" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="160" r_length="52" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E280103" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280103" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72478" e_stop="72371"/>
          <exon e_start="70730" e_stop="70679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAGGTCAGTTTTTCTTTCTAAAAGCTGTCTGATTTTTTGAGGTTTTAGAGGAAATTTACTCTTATCCTTGAAGCTAACAGAGATTATGAAGAAAAGGGGAGATGGGTTTTTGTGTTTGGTACAGGAAGTGTATTTTCTTGATTTTGAAAATATGGGAAATGGAGAAGGGATTGGAAAGAATGGCGAAAATGGGGAAATGGATAGTTGTGTTTGCCGCAGGACATGGACAAACTTGTTGAAAAGTATTGAGTTTTCGATATTTTCTTTTTTGGGTTCAAAGGGTAGTGTATATATTTACAATTTATGAATTACCAATTCGAATAAATGCATTTCTCGTTTCCATAGTTTTTGAAGTTGAAGCTTGAAAAATTGAGTTGTTAAAGTTGTGTTTGGACTTGCATTTTACTTGGGAAAAAATAGGATTTTTGTGAGTGGAAGTGAAATTTCTTAATTTCTACCAATTGCAAATATTTGAAAGATAAGAATTTCATGGCCAAATAGATATTTGGGGATAAATTGTCAAAATCTGATCCAAAATCTATGCTAAGTGTGCGGAGAATATTGGTTTTGAAGTAGACACAATTGATTCTTAAAATGAGGTTTTGATGTTTTTTCGTCTTATATACCTGCTCATGTACAATGTGGTTTGTATTTCTTTCACTTGGGTTGGGAGTTATCAAATAGTTAGAGTCAATTTATGCACAAAAAAGAAGGTACATTCTAATAATCTGAATGATGGGTTAATTTTGATATGATCAAAGTCACAGATTTTGTGCATCCTTATAAGAAAAAAAAGGTCATAGATTTTGTGTATCCTTGTAAAAGAAAAAGGTCAATAGATTTTGTGCATCTTATCTACTTATGGGATGTAGTTGGTAATTTGGGTTGGGGTCAAACTTATTAATTTAGCATCAGCCTATGCTAACATACATTCTTGCGTTTTGGTTTTCAAATTGATGTGATAGAGAGATATTATTGTGATTAACTATGTTGCTCGAACTTTTCAAATCCTTCAAATTTCAGTGCTTTTTTTGAGGATCCGACACGGTTGCGCAACATTTTTGGAGAGTCTAAGCAAAATAAGCTACCTAAATCTGTTTGATTTTATATTGGAAGAAAGTTATTTGAACAAGTTTTTAAAAAGAGATGAAGAGTTTTAAAGACCGTTCAACAAAACTTGAATCCGAAAAAGAAGTTCAAACTAGTAAAGAAGTGGTCCAAGTCAGAATAAATGATTTAAGAAAATCCAGGTTCTTTGGGGAGTAAAACAGTATATTTACTTGTCCTTTTCCGACCCAATGTACTAATATATATTCTACATATACTTATACGAAAAGAATCTTCAAATTGGAAAACAAGTTGACACATGAGAACAAATAATTTAGAAAATCCAGGTTCTCTAGAGGGGAACTGTTTGATAGACACCTGAGCTGTATATTCAATCTCGAGTCCTTTTAATGCCAATTGTACTCCAATATATTCAGTCTGGAATTTACTTTGTTTTTTGTGCATGTATAGAGAAGCTCCTATGAGAAAAGGACATATTTAAGCACTCCTCTATATTTAAGCATTCCTCTCTATACATATTCCTGTAGGCAGTTTACTTGTATATATCTTAATTGTTTTTCATACCTCTTTTTCAGGCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGAT</genome_strand>
        <mrna_strand>ATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTATTATACCCGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTGTTATTTACTTCAAAGCTGGGTATCTAAGAAGTTAATGACTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393257" ref_strand="+" ref_description="SGN-E393257 [TUS-38-G6]">
      <seq>ctgtctctgtgttgtttttgcaagtcttctctatttcttgctgagatctagagacaaagccctaaaactaaaaagccttaatggcggaagagaaggatcccacttctataccactaagtcaagcttctgaagatcctgaagaccccatctaatctactcctgcttcacccaattcttctacccgcaaggcttgctgttattttcatcaaagttgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="-" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="72858" stop="70401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72558" g_stop="72371" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.772" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70730" g_stop="70701" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="218" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="-" ref_id="SGN-E393257" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72558" e_stop="72371"/>
          <exon e_start="70730" e_stop="70701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCTCTGTGTTGTTTTTGCAAGTCTTCTCTATTTCTTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAGGTCAGTTTTTCTTTCTAAAAGCTGTCTGATTTTTTGAGGTTTTAGAGGAAATTTACTCTTATCCTTGAAGCTAACAGAGATTATGAAGAAAAGGGGAGATGGGTTTTTGTGTTTGGTACAGGAAGTGTATTTTCTTGATTTTGAAAATATGGGAAATGGAGAAGGGATTGGAAAGAATGGCGAAAATGGGGAAATGGATAGTTGTGTTTGCCGCAGGACATGGACAAACTTGTTGAAAAGTATTGAGTTTTCGATATTTTCTTTTTTGGGTTCAAAGGGTAGTGTATATATTTACAATTTATGAATTACCAATTCGAATAAATGCATTTCTCGTTTCCATAGTTTTTGAAGTTGAAGCTTGAAAAATTGAGTTGTTAAAGTTGTGTTTGGACTTGCATTTTACTTGGGAAAAAATAGGATTTTTGTGAGTGGAAGTGAAATTTCTTAATTTCTACCAATTGCAAATATTTGAAAGATAAGAATTTCATGGCCAAATAGATATTTGGGGATAAATTGTCAAAATCTGATCCAAAATCTATGCTAAGTGTGCGGAGAATATTGGTTTTGAAGTAGACACAATTGATTCTTAAAATGAGGTTTTGATGTTTTTTCGTCTTATATACCTGCTCATGTACAATGTGGTTTGTATTTCTTTCACTTGGGTTGGGAGTTATCAAATAGTTAGAGTCAATTTATGCACAAAAAAGAAGGTACATTCTAATAATCTGAATGATGGGTTAATTTTGATATGATCAAAGTCACAGATTTTGTGCATCCTTATAAGAAAAAAAAGGTCATAGATTTTGTGTATCCTTGTAAAAGAAAAAGGTCAATAGATTTTGTGCATCTTATCTACTTATGGGATGTAGTTGGTAATTTGGGTTGGGGTCAAACTTATTAATTTAGCATCAGCCTATGCTAACATACATTCTTGCGTTTTGGTTTTCAAATTGATGTGATAGAGAGATATTATTGTGATTAACTATGTTGCTCGAACTTTTCAAATCCTTCAAATTTCAGTGCTTTTTTTGAGGATCCGACACGGTTGCGCAACATTTTTGGAGAGTCTAAGCAAAATAAGCTACCTAAATCTGTTTGATTTTATATTGGAAGAAAGTTATTTGAACAAGTTTTTAAAAAGAGATGAAGAGTTTTAAAGACCGTTCAACAAAACTTGAATCCGAAAAAGAAGTTCAAACTAGTAAAGAAGTGGTCCAAGTCAGAATAAATGATTTAAGAAAATCCAGGTTCTTTGGGGAGTAAAACAGTATATTTACTTGTCCTTTTCCGACCCAATGTACTAATATATATTCTACATATACTTATACGAAAAGAATCTTCAAATTGGAAAACAAGTTGACACATGAGAACAAATAATTTAGAAAATCCAGGTTCTCTAGAGGGGAACTGTTTGATAGACACCTGAGCTGTATATTCAATCTCGAGTCCTTTTAATGCCAATTGTACTCCAATATATTCAGTCTGGAATTTACTTTGTTTTTTGTGCATGTATAGAGAAGCTCCTATGAGAAAAGGACATATTTAAGCACTCCTCTATATTTAAGCATTCCTCTCTATACATATTCCTGTAGGCAGTTTACTTGTATATATCTTAATTGTTTTTCATACCTCTTTTTCAGGCTTGCTGTTATTTTCTTCAAAGTTGGGTA</genome_strand>
        <mrna_strand>CTGTCTCTGTGTTGTTTTTGCAAGTCTTCTCTATTTCTTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCCTTAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCTAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTGTTATTTTCATCAAAGTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335681" ref_strand="+" ref_description="SGN-E335681 [cTOE-8-C8]">
      <seq>ctgcttcctgatatgcatgatatatgataccattgagggcatatatgatactcttacggaatgtgctgttattagcaaatcagctgggggaattggcgtatctgtgcacaacatacgtgctactgggagttatattcgcggaacaaacggaacatcaaatgggattgttcctatgctgcgtgtgtttaatgatactgccagatatgttgatcaagggggtggcaaaagaaagggcgcttttgctgtctaccttgagccttggcatgctgatgtatttgaatttctggatttaaaaaaaaaccatgggaaggaagagaatcgggcacgagaacttttctatgctctttgggtgccagatctattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="+" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="81670" stop="82884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81970" g_stop="82202" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82203" i_stop="82296" i_length="94">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82297" g_stop="82373" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="310" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82374" i_stop="82529" i_length="156">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82530" g_stop="82584" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="365" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="+" ref_id="SGN-E335681" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81970" e_stop="82202"/>
          <exon e_start="82297" e_stop="82373"/>
          <exon e_start="82530" e_stop="82584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTCCTGATATGCATGAAAGATGATAGCATTGAGGGCATATATGATACTCTTACGGAATGTGCTGTTATTAGCAAATCAGCTGGGGGAATTGGCGTATCTGTGCACAACATACGTGCTACTGGGAGTTATATTCGTGGAACAAACGGAACATCAAATGGGATTGTTCCTATGCTGCGTGTGTTTAATGATACTGCCAGATATGTTGATCAAGGGGGTGGCAAAAGAAAGGGTGTGTCCTCATTTTTGTGCTTGTTTAGATAATTCTAGAAGTTTAGGGTGTAGAGACTACCTTCACTTTTCTCACTCTGTAATGCTGTGTTTAGGCGCTTTTGCTGTCTACCTTGAGCCTTGGCATGCTGATGTATTTGAATTTCTGGATTTAAGAAAAAACCATGGGAAGGTATGGTACTCTTTTTTATCATCAATTGTTTAATATATTGTCTATTGGGCCTGCACCTGCTCTCTGTCACTGCACTAGATTGCTGTACTCCTTTCATATGGCAAAGCTTGTCTGTACTCAGCAATTTGACAAGACATGATGTTTCCTTTTCTTCAGGAAGAGAATCGGGCACGAGATCTTTTCTATGCTCTTTGGGTGCCAGATCTATTTA</genome_strand>
        <mrna_strand>CTGCTTCCTGATATGCATGATATATGATACCATTGAGGGCATATATGATACTCTTACGGAATGTGCTGTTATTAGCAAATCAGCTGGGGGAATTGGCGTATCTGTGCACAACATACGTGCTACTGGGAGTTATATTCGCGGAACAAACGGAACATCAAATGGGATTGTTCCTATGCTGCGTGTGTTTAATGATACTGCCAGATATGTTGATCAAGGGGGTGGCAAAAGAAAGG..............................................................................................GCGCTTTTGCTGTCTACCTTGAGCCTTGGCATGCTGATGTATTTGAATTTCTGGATTTAAAAAAAAACCATGGGAAG............................................................................................................................................................GAAGAGAATCGGGCACGAGAACTTTTCTATGCTCTTTGGGTGCCAGATCTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239997" ref_strand="+" ref_description="SGN-E239997 [cLED-29-D16]">
      <seq>acatgatgatggttctgtgcagaaaatccctgaaattccagatgatcttaaagttatttataagactgtctgggagatcaagcaacggaccctggttgacatggctgtagaccgtggttgctacatagatcagagtcaaagcctcaacatccatatggatcaacccaactttggaaagctcacttcccttcattttcatgcttggtccaggggtttgaaaactggaatgtactatctacgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0024G05-Euirp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0024G05.1" temp_strand="+" temp_description="C04HBa0024G05.1  CU019619.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0024G05 sequenced_by:sanger upload_account_name:uk">
        <position start="84148" stop="85242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84448" g_stop="84510" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84511" i_stop="84593" i_length="83">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84594" g_stop="84741" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="211" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84742" i_stop="84975" i_length="234">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84976" g_stop="85008" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="244" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0024G05.1" gen_strand="+" ref_id="SGN-E239997" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0024G05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84448" e_stop="84510"/>
          <exon e_start="84594" e_stop="84741"/>
          <exon e_start="84976" e_stop="85008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGATGATGGTTCTGTGCAGAAAATCCCTGAAATTCCAGATGATCTTAAAGTTATTTATAAGTATGAACTTTCACTAATTACTTGTTCAGTTTTTATATACACTTCATTTCCACTTACATTCTAATACTGTTCACTGACTTCAGGACTGTCTGGGAGATCAAGCAACGGACCCTGGTTGACATGGCTGTAGACCGTGGTTGCTACATAGATCAGAGTCAAAGCCTCAACATCCATATGGATCAACCCAACTTTGGAAAGCTCACTTCCCTTCATTTTCATGCTTGGTCCAGGGTACACTTCAATTTTCACATTATAAGTTTTGTTGATCTTTTGAAGAGTGCATAAGCACTAAGAAATGGTCTGGTATATTGTTACTCAATAGTTTAGTACAAACATCCATTTAAAGAGATCTTTTAGCGACTAGTGAATGTAGTTGTCAGACTACAACAGCATGAACAGATCTTTGTAGGTTCCATCTTCACAGGTCAATTTTGAGTCTGAGTTTCATCTTTCTTGTTATTGTAGGGTTTGAAAACTGGAATGTACTATCTACGATCA</genome_strand>
        <mrna_strand>ACATGATGATGGTTCTGTGCAGAAAATCCCTGAAATTCCAGATGATCTTAAAGTTATTTATAA...................................................................................GACTGTCTGGGAGATCAAGCAACGGACCCTGGTTGACATGGCTGTAGACCGTGGTTGCTACATAGATCAGAGTCAAAGCCTCAACATCCATATGGATCAACCCAACTTTGGAAAGCTCACTTCCCTTCATTTTCATGCTTGGTCCAGG..........................................................................................................................................................................................................................................GGTTTGAAAACTGGAATGTACTATCTACGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>26</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="54781" PGL_stop="54339"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54781" e_stop="54339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="54781" e_stop="54339" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54781" stop="54339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205772" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTGTTGGGTTTTATTTGCCCTAAATTTCTTACCATAAATAGGTTTTCCTTGTAGGAAAAAGGTTTTGGATTGACTAATCCTTTTCTTGTAGGAAAAGGTTTAGGATTCCATAAATAGAGACATGTTCCTTCTAATTTAATTAGCATTCACAATGTAGTCTTAAGGGCTTTGAGAGTTTTGGTTAGAGGGAGAATTTGTGGGTCACAAGATTGATATGTTATCACTTGTGTGAACCTCCCATGTATTCTGAGTGAATTTGGTTGAGGTTGTTTCCCTCTGTATTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTCTGTGGACGTAGGTCGATTGACCGAACCACGTTAAATCTATGTGTCTTTTGGTATATTTCTCGTTGTCTTCTTACTCGTGATCTTTTGAGGTTTGCTTTGCTAGCCTTCCGCGTTTACACC</gDNA_template>
            <first_frame> L  L  L  G  F  I  C  P  K  F  L  T  I  N  R  F  S  L  *  E  K  G  F  G  L  T  N  P  F  L  V  G  K  G  L  G  F  H  K  *  R  H  V  P  S  N  L  I  S  I  H  N  V  V  L  R  A  L  R  V  L  V  R  G  R  I  C  G  S  Q  D  *  Y  V  I  T  C  V  N  L  P  C  I  L  S  E  F  G  *  G  C  F  P  L  Y  L  Y  S  H  I  Y  S  G  L  L  I  S  S  V  D  V  G  R  L  T  E  P  R  *  I  Y  V  S  F  G  I  F  L  V  V  F  L  L  V  I  F  *  G  L  L  C  *  P  S  A  F  T   </first_frame>
            <second_frame>  S  C  W  V  L  F  A  L  N  F  L  P  *  I  G  F  P  C  R  K  K  V  L  D  *  L  I  L  F  L  *  E  K  V  *  D  S  I  N  R  D  M  F  L  L  I  *  L  A  F  T  M  *  S  *  G  L  *  E  F  W  L  E  G  E  F  V  G  H  K  I  D  M  L  S  L  V  *  T  S  H  V  F  *  V  N  L  V  E  V  V  S  L  C  I  C  T  L  I  F  I  V  D  C  S  S  P  L  W  T  *  V  D  *  P  N  H  V  K  S  M  C  L  L  V  Y  F  S  L  S  S  Y  S  *  S  F  E  V  C  F  A  S  L  P  R  L  H  </second_frame>
            <third_frame>   L  V  G  F  Y  L  P  *  I  S  Y  H  K  *  V  F  L  V  G  K  R  F  W  I  D  *  S  F  S  C  R  K  R  F  R  I  P  *  I  E  T  C  S  F  *  F  N  *  H  S  Q  C  S  L  K  G  F  E  S  F  G  *  R  E  N  L  W  V  T  R  L  I  C  Y  H  L  C  E  P  P  M  Y  S  E  *  I  W  L  R  L  F  P  S  V  F  V  L  S  Y  L  *  W  I  A  H  L  L  C  G  R  R  S  I  D  R  T  T  L  N  L  C  V  F  W  Y  I  S  R  C  L  L  T  R  D  L  L  R  F  A  L  L  A  F  R  V  Y  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0024G05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="72627" PGL_stop="67599"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72627" e_stop="72371"/>
            <exon e_start="70730" e_stop="70678"/>
            <exon e_start="70588" e_stop="70479"/>
            <exon e_start="69550" e_stop="69383"/>
            <exon e_start="68782" e_stop="68685"/>
            <exon e_start="68377" e_stop="68251"/>
            <exon e_start="67996" e_stop="67599"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.772" e_score="0.988"/>
          <exon-intron don_prob="0.000" acc_prob="0.452" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="72627" e_stop="72371" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.772">
            <gDNA_intron_boundary i_start="72370" i_stop="70731" i_length="1640"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70730" e_stop="70678" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.452">
            <gDNA_intron_boundary i_start="70677" i_stop="70589" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70588" e_stop="70479" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.950">
            <gDNA_intron_boundary i_start="70478" i_stop="69551" i_length="928"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69550" e_stop="69383" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69382" i_stop="68783" i_length="600"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68782" e_stop="68685" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.896" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68684" i_stop="68378" i_length="307"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68377" e_stop="68251" e_length="127"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68250" i_stop="67997" i_length="254"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="67996" e_stop="67599" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72627" stop="72371"/>
              <exon start="70730" stop="70678"/>
              <exon start="70588" stop="70479"/>
              <exon start="69550" stop="69447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72592" stop="72371"/>
              <exon start="70730" stop="70678"/>
              <exon start="70588" stop="70479"/>
              <exon start="69550" stop="69383"/>
              <exon start="68782" stop="68685"/>
              <exon start="68377" stop="68251"/>
              <exon start="67996" stop="67941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72558" stop="72371"/>
              <exon start="70730" stop="70701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72557" stop="72371"/>
              <exon start="70730" stop="70678"/>
              <exon start="70588" stop="70479"/>
              <exon start="69550" stop="69383"/>
              <exon start="68782" stop="68693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72557" stop="72371"/>
              <exon start="70730" stop="70678"/>
              <exon start="70588" stop="70479"/>
              <exon start="69550" stop="69412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72552" stop="72371"/>
              <exon start="70730" stop="70678"/>
              <exon start="70588" stop="70479"/>
              <exon start="69550" stop="69383"/>
              <exon start="68782" stop="68697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72552" stop="72371"/>
              <exon start="70730" stop="70678"/>
              <exon start="70588" stop="70479"/>
              <exon start="69550" stop="69383"/>
              <exon start="68782" stop="68716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72524" stop="72371"/>
              <exon start="70730" stop="70678"/>
              <exon start="70588" stop="70479"/>
              <exon start="69550" stop="69383"/>
              <exon start="68782" stop="68685"/>
              <exon start="68377" stop="68282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72524" stop="72371"/>
              <exon start="70730" stop="70678"/>
              <exon start="70588" stop="70479"/>
              <exon start="69550" stop="69383"/>
              <exon start="68782" stop="68685"/>
              <exon start="68377" stop="68307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72524" stop="72371"/>
              <exon start="70730" stop="70678"/>
              <exon start="70588" stop="70479"/>
              <exon start="69550" stop="69383"/>
              <exon start="68782" stop="68687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72521" stop="72371"/>
              <exon start="70730" stop="70678"/>
              <exon start="70588" stop="70479"/>
              <exon start="69550" stop="69383"/>
              <exon start="68782" stop="68689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72520" stop="72371"/>
              <exon start="70730" stop="70678"/>
              <exon start="70588" stop="70479"/>
              <exon start="69550" stop="69383"/>
              <exon start="68782" stop="68685"/>
              <exon start="68377" stop="68251"/>
              <exon start="67996" stop="67744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72517" stop="72371"/>
              <exon start="70730" stop="70678"/>
              <exon start="70588" stop="70479"/>
              <exon start="69550" stop="69383"/>
              <exon start="68782" stop="68741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72505" stop="72371"/>
              <exon start="70730" stop="70678"/>
              <exon start="70588" stop="70479"/>
              <exon start="69550" stop="69383"/>
              <exon start="68782" stop="68698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72478" stop="72371"/>
              <exon start="70730" stop="70679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280103" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72462" stop="72371"/>
              <exon start="70730" stop="70678"/>
              <exon start="70588" stop="70479"/>
              <exon start="69550" stop="69383"/>
              <exon start="68782" stop="68685"/>
              <exon start="68377" stop="68307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69457" stop="69383"/>
              <exon start="68782" stop="68685"/>
              <exon start="68377" stop="68251"/>
              <exon start="67996" stop="67796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69452" stop="69383"/>
              <exon start="68782" stop="68685"/>
              <exon start="68377" stop="68252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69437" stop="69383"/>
              <exon start="68782" stop="68685"/>
              <exon start="68377" stop="68251"/>
              <exon start="67996" stop="67599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68377" stop="68251"/>
              <exon start="67996" stop="67602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67848" stop="67599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398056" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTACGAAGGGGAAAAATAGGTGGGCACCTTACCTTACAAGTCTCTTCTTCACAATAATATCATCTCAGCTGTCTCTGTGTTGTTTTTGCAAGTCTTCTCTATTTCTTGCTGAGATCTAGAGACAAAGCCCTAAAACTAAAAAGCAAAAATGGCGGAAGAGAAGGATCCCACTTCTATACCACTAAGTCAAGCTTCTGAAGATCCTGAAGACCCCATCAAATCTACTCCTGCTTCACCCAATTCTTCTACCCGCAAG : GCTTGCTGTTATTTTCTTCAAAGTTGGGTATCTAAGAAGTTTATGACTGGATG : TGTGGTTCTCTTCCCTGTGGCGGTTACATTCTTTGTGACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTCAGTCCACTATATGAACAACTTGGCATTGACATATTTG : GACTAGGATTTGTCACATCTCTTGTTTTTGTATTCTTAGTTGGAGTTTTTGTTTCATCCTGGCTGGGTGCTACTGTTTTTTGGATTGGGGAATGGATTATTAAACGAATGCCATTTGTCAGACACTTATATTCGGCTTCAAAGCAGATCAGTTCTGCAGTGTCTCCAG : ATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAG : ACAGAAGAAGGGGATGAAGAATTGTATAGTGTTTTTGTCCCTACAAACCATTTGTACATTGGTGATGTACTCCTGGTTAACGCCAATGATGTCATAAAACCAAACATGTCCATCCGTGAAGGCATTG : AGATCATTGTTTCCGGAGGAATGACCATGCCTCAAAGGATCTCTCATGTGGCAAGAGTTGCGCGACAAAGTGAAAGAATTCCACTGAACAGAATTAAGTAAAAATAGTGATGAACATGACAATGTAGGACGGTTTGTAATTAGTCAAGGAGGGAAAGAAAAATCATATATACATTGCTGTAATTTTTCGGATCGATCCGATATATGTTGTATTATGTCTCTGTTCTGAAGATACAGTAAAGTTCTCGTTGAAGGTTTAAATTCATGTCCATCTCAGGCAATCAAACAGATATATCCAGTTATCATGTTGTCCCAACATGGGTGAATGTAAAAATATTAGTAAATATGGACAATTTTTTTTTATAAATTAAAAATTTATTTTTGTTTAGCATGTATCTA</gDNA_template>
            <first_frame> F  T  K  G  K  N  R  W  A  P  Y  L  T  S  L  F  F  T  I  I  S  S  Q  L  S  L  C  C  F  C  K  S  S  L  F  L  A  E  I  *  R  Q  S  P  K  T  K  K  Q  K  W  R  K  R  R  I  P  L  L  Y  H  *  V  K  L  L  K  I  L  K  T  P  S  N  L  L  L  L  H  P  I  L  L  P  A  R :   L  A  V  I  F  F  K  V  G  Y  L  R  S  L  *  L  D   : V  W  F  S  S  L  W  R  L  H  S  L  *  H  G  G  L  F  S  L  L  M  V  S  S  V  H  Y  M  N  N  L  A  L  T  Y  L  :  D  *  D  L  S  H  L  L  F  L  Y  S  *  L  E  F  L  F  H  P  G  W  V  L  L  F  F  G  L  G  N  G  L  L  N  E  C  H  L  S  D  T  Y  I  R  L  Q  S  R  S  V  L  Q  C  L  Q  :  I  K  T  P  P  L  L  R  K  W  Q  L  F  V  I  P  V  W  G  N  M  L  L  V  L  *  H  H  Q  L  P  F  R :   Q  K  K  G  M  K  N  C  I  V  F  L  S  L  Q  T  I  C  T  L  V  M  Y  S  W  L  T  P  M  M  S  *  N  Q  T  C  P  S  V  K  A  L  :  R  S  L  F  P  E  E  *  P  C  L  K  G  S  L  M  W  Q  E  L  R  D  K  V  K  E  F  H  *  T  E  L  S  K  N  S  D  E  H  D  N  V  G  R  F  V  I  S  Q  G  G  K  E  K  S  Y  I  H  C  C  N  F  S  D  R  S  D  I  C  C  I  M  S  L  F  *  R  Y  S  K  V  L  V  E  G  L  N  S  C  P  S  Q  A  I  K  Q  I  Y  P  V  I  M  L  S  Q  H  G  *  M  *  K  Y  *  *  I  W  T  I  F  F  Y  K  L  K  I  Y  F  C  L  A  C  I   </first_frame>
            <second_frame>  L  R  R  G  K  I  G  G  H  L  T  L  Q  V  S  S  S  Q  *  Y  H  L  S  C  L  C  V  V  F  A  S  L  L  Y  F  L  L  R  S  R  D  K  A  L  K  L  K  S  K  N  G  G  R  E  G  S  H  F  Y  T  T  K  S  S  F  *  R  S  *  R  P  H  Q  I  Y  S  C  F  T  Q  F  F  Y  P  Q   : G  L  L  L  F  S  S  K  L  G  I  *  E  V  Y  D  W  M  :  C  G  S  L  P  C  G  G  Y  I  L  C  D  M  V  V  Y  S  V  C  *  W  F  L  Q  S  T  I  *  T  T  W  H  *  H  I  W :   T  R  I  C  H  I  S  C  F  C  I  L  S  W  S  F  C  F  I  L  A  G  C  Y  C  F  L  D  W  G  M  D  Y  *  T  N  A  I  C  Q  T  L  I  F  G  F  K  A  D  Q  F  C  S  V  S  R :   S  K  H  H  R  F  *  G  S  G  N  Y  S  S  S  P  C  G  G  I  C  F  W  F  Y  N  I  I  S  Y  P  S   : D  R  R  R  G  *  R  I  V  *  C  F  C  P  Y  K  P  F  V  H  W  *  C  T  P  G  *  R  Q  *  C  H  K  T  K  H  V  H  P  *  R  H  * :   D  H  C  F  R  R  N  D  H  A  S  K  D  L  S  C  G  K  S  C  A  T  K  *  K  N  S  T  E  Q  N  *  V  K  I  V  M  N  M  T  M  *  D  G  L  *  L  V  K  E  G  K  K  N  H  I  Y  I  A  V  I  F  R  I  D  P  I  Y  V  V  L  C  L  C  S  E  D  T  V  K  F  S  L  K  V  *  I  H  V  H  L  R  Q  S  N  R  Y  I  Q  L  S  C  C  P  N  M  G  E  C  K  N  I  S  K  Y  G  Q  F  F  F  I  N  *  K  F  I  F  V  *  H  V  S  </second_frame>
            <third_frame>   Y  E  G  E  K  *  V  G  T  L  P  Y  K  S  L  L  H  N  N  I  I  S  A  V  S  V  L  F  L  Q  V  F  S  I  S  C  *  D  L  E  T  K  P  *  N  *  K  A  K  M  A  E  E  K  D  P  T  S  I  P  L  S  Q  A  S  E  D  P  E  D  P  I  K  S  T  P  A  S  P  N  S  S  T  R  K  :  A  C  C  Y  F  L  Q  S  W  V  S  K  K  F  M  T  G  C :   V  V  L  F  P  V  A  V  T  F  F  V  T  W  W  F  I  Q  F  V  D  G  F  F  S  P  L  Y  E  Q  L  G  I  D  I  F   : G  L  G  F  V  T  S  L  V  F  V  F  L  V  G  V  F  V  S  S  W  L  G  A  T  V  F  W  I  G  E  W  I  I  K  R  M  P  F  V  R  H  L  Y  S  A  S  K  Q  I  S  S  A  V  S  P   : D  Q  N  T  T  A  F  K  E  V  A  I  I  R  H  P  R  V  G  E  Y  A  F  G  F  I  T  S  S  V  T  L  Q  :  T  E  E  G  D  E  E  L  Y  S  V  F  V  P  T  N  H  L  Y  I  G  D  V  L  L  V  N  A  N  D  V  I  K  P  N  M  S  I  R  E  G  I   : E  I  I  V  S  G  G  M  T  M  P  Q  R  I  S  H  V  A  R  V  A  R  Q  S  E  R  I  P  L  N  R  I  K  *  K  *  *  *  T  *  Q  C  R  T  V  C  N  *  S  R  R  E  R  K  I  I  Y  T  L  L  *  F  F  G  S  I  R  Y  M  L  Y  Y  V  S  V  L  K  I  Q  *  S  S  R  *  R  F  K  F  M  S  I  S  G  N  Q  T  D  I  S  S  Y  H  V  V  P  T  W  V  N  V  K  I  L  V  N  M  D  N  F  F  L  *  I  K  N  L  F  L  F  S  M  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0024G05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72487" stop="72371"/>
                    <exon start="70730" stop="70678"/>
                    <exon start="70588" stop="70479"/>
                    <exon start="69550" stop="69383"/>
                    <exon start="68782" stop="68685"/>
                    <exon start="68377" stop="68251"/>
                    <exon start="67996" stop="67896"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAKMAEEKDPTSIPLSQASEDPEDPIKSTPASPNSSTRKACCYFLQSWVSKKFMTGCVVLFPVAVTFFVTWWFIQFVDGFFSPLYEQLGIDIFGLGFVTSLVFVFLVGVFVSSWLGATVFWIGEWIIKRMPFVRHLYSASKQISSAVSPDQNTTAFKEVAIIRHPRVGEYAFGFITSSVTLQTEEGDEELYSVFVPTNHLYIGDVLLVNANDVIKPNMSIREGIEIIVSGGMTMPQRISHVARVARQSERIPLNRIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="69174" e_stop="68384"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="69174" e_stop="68384" e_length="791"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69174" stop="68384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69174" stop="68478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464304" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGAATGGGGTTATTTCATAATAGTTTACAGAATATTATGTTACTATCACCTGTTCCTTTCATCAAGAAAAGGGTGGATAGCAAAAGAAAGAAAAAGTAAGGATAATCTCTAGCAGTGGAGTGTAACAAATCTCAGAGCTGTGAAGTAAACATGTGAAATCTGAAATAAACTTTCATTGATGTCCTGGACTTCCATTTAAATAATAAAGGGTGTCAAAAAGCATGGGGATCAGGACCATAAGACAGACAATACATCAAAATTGTGTCTCGAAGATAAAGAAATAAGTACTTTATTTTGAGAGTTGAGGTTGCTACCTGGAGTATTTTGGTTTTGCTGTATTCTCTTTTTACTTGTTCTTGATACTTACTTTTATTCGTATATAATCTACAGATCAAAACACCACCGCTTTTAAGGAAGTGGCAATTATTCGTCATCCCCGTGTGGGGGAATATGCTTTTGGTTTTATAACATCATCAGTTACCCTTCAGGTATTTGTTCGCTGTAGCAAGTTTTCCCTTATTACTGCAATAGGGAAAAAACCATCCTTCTTATTATTTTCAGAAATGCATATTTTCTTTTGCTGCTGTGCAGTGCTGAATGTTCTTTTGATGTGCATAAGTTCTTTCTTGAACTACTGACATTTTTCAAAGATAAGCTCCTCATATTCTCTCCGGTGACTTGATAGAGATGAAAGACGAGAAGTAGAAAGAACAACAATAATAGAACACAGAAAAGAGCATTTAATAATATTGTTGGCTGATATATGTACATTGACACATTATTTCTGGA</gDNA_template>
            <first_frame> G  E  W  G  Y  F  I  I  V  Y  R  I  L  C  Y  Y  H  L  F  L  S  S  R  K  G  W  I  A  K  E  R  K  S  K  D  N  L  *  Q  W  S  V  T  N  L  R  A  V  K  *  T  C  E  I  *  N  K  L  S  L  M  S  W  T  S  I  *  I  I  K  G  V  K  K  H  G  D  Q  D  H  K  T  D  N  T  S  K  L  C  L  E  D  K  E  I  S  T  L  F  *  E  L  R  L  L  P  G  V  F  W  F  C  C  I  L  F  L  L  V  L  D  T  Y  F  Y  S  Y  I  I  Y  R  S  K  H  H  R  F  *  G  S  G  N  Y  S  S  S  P  C  G  G  I  C  F  W  F  Y  N  I  I  S  Y  P  S  G  I  C  S  L  *  Q  V  F  P  Y  Y  C  N  R  E  K  T  I  L  L  I  I  F  R  N  A  Y  F  L  L  L  L  C  S  A  E  C  S  F  D  V  H  K  F  F  L  E  L  L  T  F  F  K  D  K  L  L  I  F  S  P  V  T  *  *  R  *  K  T  R  S  R  K  N  N  N  N  R  T  Q  K  R  A  F  N  N  I  V  G  *  Y  M  Y  I  D  T  L  F  L   </first_frame>
            <second_frame>  V  N  G  V  I  S  *  *  F  T  E  Y  Y  V  T  I  T  C  S  F  H  Q  E  K  G  G  *  Q  K  K  E  K  V  R  I  I  S  S  S  G  V  *  Q  I  S  E  L  *  S  K  H  V  K  S  E  I  N  F  H  *  C  P  G  L  P  F  K  *  *  R  V  S  K  S  M  G  I  R  T  I  R  Q  T  I  H  Q  N  C  V  S  K  I  K  K  *  V  L  Y  F  E  S  *  G  C  Y  L  E  Y  F  G  F  A  V  F  S  F  Y  L  F  L  I  L  T  F  I  R  I  *  S  T  D  Q  N  T  T  A  F  K  E  V  A  I  I  R  H  P  R  V  G  E  Y  A  F  G  F  I  T  S  S  V  T  L  Q  V  F  V  R  C  S  K  F  S  L  I  T  A  I  G  K  K  P  S  F  L  L  F  S  E  M  H  I  F  F  C  C  C  A  V  L  N  V  L  L  M  C  I  S  S  F  L  N  Y  *  H  F  S  K  I  S  S  S  Y  S  L  R  *  L  D  R  D  E  R  R  E  V  E  R  T  T  I  I  E  H  R  K  E  H  L  I  I  L  L  A  D  I  C  T  L  T  H  Y  F  W  </second_frame>
            <third_frame>   *  M  G  L  F  H  N  S  L  Q  N  I  M  L  L  S  P  V  P  F  I  K  K  R  V  D  S  K  R  K  K  K  *  G  *  S  L  A  V  E  C  N  K  S  Q  S  C  E  V  N  M  *  N  L  K  *  T  F  I  D  V  L  D  F  H  L  N  N  K  G  C  Q  K  A  W  G  S  G  P  *  D  R  Q  Y  I  K  I  V  S  R  R  *  R  N  K  Y  F  I  L  R  V  E  V  A  T  W  S  I  L  V  L  L  Y  S  L  F  T  C  S  *  Y  L  L  L  F  V  Y  N  L  Q  I  K  T  P  P  L  L  R  K  W  Q  L  F  V  I  P  V  W  G  N  M  L  L  V  L  *  H  H  Q  L  P  F  R  Y  L  F  A  V  A  S  F  P  L  L  L  Q  *  G  K  N  H  P  S  Y  Y  F  Q  K  C  I  F  S  F  A  A  V  Q  C  *  M  F  F  *  C  A  *  V  L  S  *  T  T  D  I  F  Q  R  *  A  P  H  I  L  S  G  D  L  I  E  M  K  D  E  K  *  K  E  Q  Q  *  *  N  T  E  K  S  I  *  *  Y  C  W  L  I  Y  V  H  *  H  I  I  S  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0024G05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68789" stop="68535"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STDQNTTAFKEVAIIRHPRVGEYAFGFITSSVTLQVFVRCSKFSLITAIGKKPSFLLFSEMHIFFCCCAVLNVLLMCISSFLNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="81970" PGL_stop="82584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81970" e_stop="82202"/>
            <exon e_start="82297" e_stop="82373"/>
            <exon e_start="82530" e_stop="82584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.901" acc_prob="0.913" e_score="0.983"/>
          <exon-intron don_prob="0.998" acc_prob="0.964" e_score="0.987"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="81970" e_stop="82202" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="0.901" acc_prob="0.913">
            <gDNA_intron_boundary i_start="82203" i_stop="82296" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="82297" e_stop="82373" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.964">
            <gDNA_intron_boundary i_start="82374" i_stop="82529" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="82530" e_stop="82584" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81970" stop="82202"/>
              <exon start="82297" stop="82373"/>
              <exon start="82530" stop="82584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335681" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCTTCCTGATATGCATGAAAGATGATAGCATTGAGGGCATATATGATACTCTTACGGAATGTGCTGTTATTAGCAAATCAGCTGGGGGAATTGGCGTATCTGTGCACAACATACGTGCTACTGGGAGTTATATTCGTGGAACAAACGGAACATCAAATGGGATTGTTCCTATGCTGCGTGTGTTTAATGATACTGCCAGATATGTTGATCAAGGGGGTGGCAAAAGAAAGG : GCGCTTTTGCTGTCTACCTTGAGCCTTGGCATGCTGATGTATTTGAATTTCTGGATTTAAGAAAAAACCATGGGAAG : GAAGAGAATCGGGCACGAGATCTTTTCTATGCTCTTTGGGTGCCAGATCTATTTA</gDNA_template>
            <first_frame> L  L  P  D  M  H  E  R  *  *  H  *  G  H  I  *  Y  S  Y  G  M  C  C  Y  *  Q  I  S  W  G  N  W  R  I  C  A  Q  H  T  C  Y  W  E  L  Y  S  W  N  K  R  N  I  K  W  D  C  S  Y  A  A  C  V  *  *  Y  C  Q  I  C  *  S  R  G  W  Q  K  K  G :   R  F  C  C  L  P  *  A  L  A  C  *  C  I  *  I  S  G  F  K  K  K  P  W  E   : G  R  E  S  G  T  R  S  F  L  C  S  L  G  A  R  S  I   </first_frame>
            <second_frame>  C  F  L  I  C  M  K  D  D  S  I  E  G  I  Y  D  T  L  T  E  C  A  V  I  S  K  S  A  G  G  I  G  V  S  V  H  N  I  R  A  T  G  S  Y  I  R  G  T  N  G  T  S  N  G  I  V  P  M  L  R  V  F  N  D  T  A  R  Y  V  D  Q  G  G  G  K  R  K   : G  A  F  A  V  Y  L  E  P  W  H  A  D  V  F  E  F  L  D  L  R  K  N  H  G  K  :  E  E  N  R  A  R  D  L  F  Y  A  L  W  V  P  D  L  F  </second_frame>
            <third_frame>   A  S  *  Y  A  *  K  M  I  A  L  R  A  Y  M  I  L  L  R  N  V  L  L  L  A  N  Q  L  G  E  L  A  Y  L  C  T  T  Y  V  L  L  G  V  I  F  V  E  Q  T  E  H  Q  M  G  L  F  L  C  C  V  C  L  M  I  L  P  D  M  L  I  K  G  V  A  K  E  R  :  A  L  L  L  S  T  L  S  L  G  M  L  M  Y  L  N  F  W  I  *  E  K  T  M  G  R :   K  R  I  G  H  E  I  F  S  M  L  F  G  C  Q  I  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0024G05.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81971" stop="82202"/>
                    <exon start="82297" stop="82373"/>
                    <exon start="82530" stop="82583"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFLICMKDDSIEGIYDTLTECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADVFEFLDLRKNHGKEENRARDLFYALWVPDLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="84448" PGL_stop="85008"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84448" e_stop="84510"/>
            <exon e_start="84594" e_stop="84741"/>
            <exon e_start="84976" e_stop="85008"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84448" e_stop="84510" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84511" i_stop="84593" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84594" e_stop="84741" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="84742" i_stop="84975" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84976" e_stop="85008" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84448" stop="84510"/>
              <exon start="84594" stop="84741"/>
              <exon start="84976" stop="85008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATGATGATGGTTCTGTGCAGAAAATCCCTGAAATTCCAGATGATCTTAAAGTTATTTATAA : GACTGTCTGGGAGATCAAGCAACGGACCCTGGTTGACATGGCTGTAGACCGTGGTTGCTACATAGATCAGAGTCAAAGCCTCAACATCCATATGGATCAACCCAACTTTGGAAAGCTCACTTCCCTTCATTTTCATGCTTGGTCCAGG : GGTTTGAAAACTGGAATGTACTATCTACGATCA</gDNA_template>
            <first_frame> T  *  *  W  F  C  A  E  N  P  *  N  S  R  *  S  *  S  Y  L  *  :  D  C  L  G  D  Q  A  T  D  P  G  *  H  G  C  R  P  W  L  L  H  R  S  E  S  K  P  Q  H  P  Y  G  S  T  Q  L  W  K  A  H  F  P  S  F  S  C  L  V  Q   : G  F  E  N  W  N  V  L  S  T  I  </first_frame>
            <second_frame>  H  D  D  G  S  V  Q  K  I  P  E  I  P  D  D  L  K  V  I  Y  K :   T  V  W  E  I  K  Q  R  T  L  V  D  M  A  V  D  R  G  C  Y  I  D  Q  S  Q  S  L  N  I  H  M  D  Q  P  N  F  G  K  L  T  S  L  H  F  H  A  W  S  R  :  G  L  K  T  G  M  Y  Y  L  R  S </second_frame>
            <third_frame>   M  M  M  V  L  C  R  K  S  L  K  F  Q  M  I  L  K  L  F  I   : R  L  S  G  R  S  S  N  G  P  W  L  T  W  L  *  T  V  V  A  T  *  I  R  V  K  A  S  T  S  I  W  I  N  P  T  L  E  S  S  L  P  F  I  F  M  L  G  P  G :   V  *  K  L  E  C  T  I  Y  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0024G05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84449" stop="84510"/>
                    <exon start="84594" stop="84741"/>
                    <exon start="84976" stop="85008"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HDDGSVQKIPEIPDDLKVIYKTVWEIKQRTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSRGLKTGMYYLRS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 103 chains have been computed
$ 
$ memory statistics:
$ 57296 bytes spliced alignments in total
$ 26 spliced alignments have been stored
$ 2203 bytes was the average size of a spliced alignment
$ 9592 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2398 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 136 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-05 08:22:21
-->
