<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-22 15:52:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0036C23-cqpb5/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-kd6rNt/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kd6rNt/sgn_marker_seqs" ref_id="SGN-M6868" ref_strand="-" ref_description="SGN-M6868 C2_At1g54140 [cosii_markers]">
      <seq>tcagtgctttttggttcttcgtttaatctttgcctattgctcgaattgtggtgaatcttcggttgaaccttgaaagaaatggctgaaggtggagaagaggacttgccaagggatgcaaagattgtcaaaacgctgctaaaatcaatgggtgttgatgactacgagcctcgagttgtgcatcaatttttggaattgtggtatcgctatgttgttgatgtactgacggatgctcaagtctactcagagcatgcagggaaggcttccattgactctgatgacatcaagcttgccattcagtcaaaagttaatttcagcttctcacaacccccgccgcgtgaggtcctactggagttggctaggaacagaaacaagattccattgccgaaatcaattgctgggtctggagtaccactccctcctgaacaagatacactgatcaaccctaactatcagctagctattgcaaagaagcaaactaaccaaccagaagaaacagaggaggacgaagaaagcgctgatcccaacccagctccaagcaaaaatccaactctttctcatgaaaagacagacttacctcaaggtactcctcaacgagtatcctttccccttggcgccaaacgtccaagatgatgtcttatgcttgatcagctttagtcacaagagcctttgtaaccgcctgcctatgtatttaatcgaaggcattgtatacttgttgtttgaacatgaagtatgaaactttaagatccttctgtaacacagtcagtattagtttaaatgctctccttccagtatttattagacacaattagcagagagttgagctgtaaaatgaagaattaccttggcattatcaatagttttccaacatattcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-cqpb5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="28616" stop="21400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28316" g_stop="28256" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28255" i_stop="26977" i_length="1279">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26976" g_stop="26699" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="339" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26698" i_stop="22234" i_length="4465">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22233" g_stop="21701" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="872" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="873" polyA_stop="888"/>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-M6868" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6868" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28316" e_stop="28256"/>
          <exon e_start="26976" e_stop="26699"/>
          <exon e_start="22233" e_stop="21701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTGCTTTTTGGTTCTTCGTTTAATCTTTGCCTATTGCTCGAATTGTGGTGAATCTTCGGTAAGTATTCGTATTTGAGGTTCCTTTTTTAGTACTGAATTTGGGGGATTTGTAATTTTGAGTTAGGGTTAAGCTGGCCCTGTATGGAGGTGGAGGTTTATGGTCTTGAATCTTTTGTACTTGAAGGAGGGTTAAAAGGGGTTCAAGACCACCCATTTTTATGGTAATTGGGTGTATTTTGCCCTTTTTTTGAGTTCTATAGCTTCATTAACATTGTTAACTGCTTCTTATGTGATAAAATGGCTCAAATTAACCCTGTGATGATGTACTATTTGGCCTCTTAGTATTGGGTTTGAAGTTATTTGTTTTTTTAGTGTTTTTAGTATGTGATTCTAATAATGGAATTTGTGGAGTTGAAATTGGTTGAATTATACTAGTAGTTTTATTCGTTTGCTTGCTGATATGGTCTATTTTTACCTGTCATGATGTGCTATTCGGTCTTTAAATATGGGATGGAAGTCATAACTTATTAAGTATTTTTACTGTTTCATTCTAATAATTGAATTGTGCGGAGTTGAAATTCGTTGACTTAAAGTAGCACCTTTATTCGATTGCTTGCTGGTATGGACTCTTGGTGTTTTTTTTTCTTGTCCCAGTTATATGGTGTTTTATTTTCTATTAGTTAGTAATAAGAAGCTGAAAAGATTGCTTATTAGCAAGGGAAATGTATGATAGTTTGTGAGGAATGTGTGTTATAATTCTTGTTCAATGCTTCCTTTTTTGAAACTAGAAAATAATTGTAATACTTGTCTCTGATTTTCATTCCCTAGCTCTCCCGTAATGGTTTTATATCTGAAATTTAAGGGTATCCAATGTTGTTGTGTTCCTCCATCTAATAAATTTCGAAACTATTATGGTTCCATTATCACTGCTCTTGAAGTGGAGAAAGGGATCTAATTAATTCCATTTAATGTACTTATTAAACTGTGTTTGAATGTTTCTTTGACCTCAACAGGATTCAATTAGACAGATGGAATTTGGTATTGTTTTATATTTTTAGTTTTATTTTTGTTTTTTCCTTTTCATAGTGCTCTTACTTTATACCTCTAAATATTTTCCGGATTGCTCTTTTGCGTGTATGGAGAAAAGCTGTTTGATGAATGTCTTTCTACATAAGCTCTCACTCTGATGCTTTTCAGAATGTTTGCTATTATGTTTTACAATTTCATGATTTCAACTTGTAGTGCATCACATCTCCATCTCTATCTGGTTTCTGCAACTCTATATTGACACTACTGACGTGTATGAAATGATGCTGATGGTTAATGTTTCTTTTTAGGTTGAACCTTGAAAGAAATGGCTGAAGGTGGAGAAGAGGACTTGCCAAGGGATGCAAAGATTGTCAAAACGCTGCTAAAATCAATGGGTGTTGATGACTACGAGCCTCGAGTTGTGCATCAATTTTTGGAATTGTGGTATCGCTATGTTGTTGATGTACTGACGGATGCTCAAGTCTACTCAGAGCATGCAGGGAAGGCTTCCATTGACTCTGATGACATCAAGCTTGCCATTCAGTCAAAAGTTAATTTCAGCTTCTCACAACCCCCGCCGCGTGAGGTACCAAGTCTTTACTAAATCTTTCATTTTTGTGCTGGTGTTTCATTCTTCCAAGAATGAACTCATATCTTTCTTAGAGACCTTTTAGGTGTATGATGAAACTGATAACCTTTAGCCCTCTCTTGTCTAAGAAAGATAAGTAAAATGGAGTTTCTGAATCAAAGAATTATATGATGTAACTAAATTTTTTGTCTTGGAGTCTTAGGTTGTTCTCTTGTAACGTGTTTCAGAACTTCGGTTGTCATTCGACATAATTATATATTTTAAAGTTATAACTGAAAACAGTGAAAAGGTATCAAACTAATAGGTCATAGTTTGGAAAGTTATCTATTTCAAAATAAAAAAATACATGTCATAGTCTGGTGCTATCATATGTGGTTTATTACCGTGACTGAGAAAAGTTGAACAGCAGGTATTGGTGGCTGAATGCTAGGGTAGTGGTATAGAGATTTTCAGCCTTGTGCAGAACAGAAGATGCTGAAGGTTCTACAGGAATTTTTTTAGGTTGTGAATGGGTTCTGGCATTTTGATTACTTAACAGTTGCTGTTTGTTAGTTGACTAATTCAGAGTATCACAGGATTGGTTAAAAAGTAAAATAAACACTTTTAATCTGCATAGAATTTTCTAGAGTAAAGTCACCAGGTTAAAAATTATCTGTATAGAATTTCCTAGAATAAAGTTACCAAGTTCAAAAAATCTGCATAAGATTTCCTAGACTAATCACACCATTAGAAGGCTGCATAGACACTTCAAAATAAGCAACGACAACTTGACCAATACTGATTCAATCCGAGCTTTTCTTTTTTCTTTTTTTAATTTAAAGGTCCATTGATCATGGAGGTGCAAAAAGTTACAATTTGAGCTTGGCATCCCAAACTTTGTACATGATCATAGAGATGAGACTAACACTCTATTCCTACGCAAAACAAGTGACAATTATTTGAGAGATCAAGGAGGATCATATATGATGTGGCAAGTTTTGCCGGTTTATTCTTAAATGTTGGTAAGCTCCATTTATCCGTATGGACCAGACCTCTTATGTTACTGGGAAGTTCACAGAAGAGATTGAAGGTCTTCACTCCTGCAACTTTATGACTTAGCACTGCTAGTCTGTCCGCCGGTCTATTAGCTTCTCGAAAATAATGGTTGATATTGAAGTCATGATCTTCAATCATCTTCAGGATCTCTTTTATTTGGTTGTAGATTTTCGAAGGAGGTTTCCACTCTTTTCTGGAGCACTTGGCTAGTATCAGGGAATCTGTTTCACCTATCGCCATATCAAAACCTTTGCCAGCACACCATTTCAGTCCAAAACCATAGCCTCAGCTTCTGCCTTCTGCAATGTTGCTAGTTCCAGCTCCTAAGGATATAATGTAGGCAAAAATGAAGTTCCCCTCTTGATCTCTGATGATTCCCCCTCCTCCACACTGCCCCTCTGCAGCTACCAACGCTATTGAGTGTGACTCTGAAAGAAGGAGGTTTGATCCATGCAACTGGAATACTTGTATTGTATTGGACAACCGCATCACAAGCTTGACAAATACTGCTCTAGTTGTCTCTAATTTTGACTGTTACTCCTGATAACATGCACAATACAATTTGTGATATTAGTACTAGTTCTATAAAGTGAGGGCCTAGTCCCCTCAAATTTGTTGCTACAACTTGACTTCCATAGCTCCCAACAAATAGTAGGATGTAGGTTCTTGGAAATGAAATTGGTGATAGGGCTGTTGGATTTGTGGTTCCACCAACTTCGTAGGATCATGTTGAGGTTGTCACTTCTAAATCCAATGTCCAGGACCCTGCAAACTTTCTCCAGATCTTCTTAGCTAGGTCACCTTGACAGAACAAATGTTTGATATCTTTATGCTCAACTCTTGTGTTAGAAAGGCTGCAACAGTAACATTGTGGGTTGAGGGCAATCCCAAGTCTTACAACCTTGTCGTCGGTCGATAGCTTGTTGCTGATAGTTCTCCACAAAAGGAAGGACATGTTAAAAGAAACATCTTTTTTCCATAGGTTGCAATAGATTGGATTTGGATCTCTTTTTTACCTGATAGACCTCCAAGTTGAACCAATGCTAAATTTCCCCGAGTTAGATAGGCTCCAGATGGATTTTTCATTGATATTGCTATCAATCTTGATCTCTATGGAGTTGAGCACCGTTTTGTTGATCTCAGGGAGCTGACTATTGAGATAGTTCCAGCTCCAAAAATATGAATAAAGACCTCATTCAGCAAAAAGCATTCGCTGCAAAGTCCAATGCCCAATTGCTGTACAGTAGAGTTGTATTTTACTAGTTATACCAGATACTCTATTTCACAGGCAACTAGCAGACTATGCACGACTTCTCTTGCCAACATGCTATATCTGTTAATTCTTTGGTTATGATGGGAATGACTCTTATTTCAAGGAAGAATACAATTGTTGAACATCTTCTCCAGATATTTCTTTCTCTGCTGATGGATGAGTCTTCTCAAGTTCGTTTGAATATTATTAGTAAGCTAAAACACGTGAACCAGGGGATTCAAATTGATCAGCTCTCCCAATTCTTTCTGCTAGTTCTTGTTTAACTTACAAGGATAGACACTGGATGGTTCAGCTTGCAATAATATAGTTCATCCCTCTATTGCGGAGTCAGTTGGGTCTTCACTTTTGCAATGACAGACTTGCTGCTCTTCTCTATGCTATACCAGTTCACTACCTAGTTGGATTAAAGCATTTTATCAAAGGATTTTATCCTCATATCCTGGCTATTTGCGCACTATCCAAGTCTATTTTAGGTATCCATTTACATATTTCTTCCTTAATGAGTCCGAAGGAAAGAAAGGGCACCTACAATGCAAATAAAAATTGAATGCAAGGCTATGGAAGGCTACTGCTCACCAGTGGCTCTCAGTGCTCGGTGGATTCGACTGGACTAGCAACAATCTGCTTCCTCCAGATATGTTGCTGTTGTTTACTTAGTATACCCTGGAAGGTCGAAGGTTCCTCCAGACATTATGTTCATTGGATGACTCCGCACATGCTAGTTTTCATCTGAAGAACTATATTATGATCCTCAATGGGGTTGTTTCTTTTCTTGGATTGGTAATGTGGCACAGTCTATCTCAGGTATTAACGGGTTCATTTATAACTTGTGTTTTGCTGGGGTGTTCTTTCGAGCGATACAGTATAACTGGCTAGGTGAATTTTGGTGCATCACTAGCTTTTTTTAGTCAAGTTGCTCATGATACTATAAATGTGAAAGAAGGGGCCTCTTAGGATACTCGAAACTGTTATGAAATCACTGAGACACTGAACAGACATAATTATTTCAGTACCATGATAATTTTAGTGGATGCAGCGTTAGCATTATGGAGATTATTCATTCCCTCTTATTCACTATGATGAAATTAGTAGAAGAAAGATATGCCAAGATATATATCTGCTTTTGAGAAATGAGGAAGAAATGTGTTCGCTGTCATGCTAGAAGAAATGACCATTACTGGTGCAAGGTTTGATATTGCCAGAATTATCCTGGCACTCATCATGTTAGTGTGGGGCCCCATTGAGAAGAAGTCCAATAGAATTACAAACAATGAATTATATTAGTGAAGGTTCAGCAGTGTATTATGTTCCTATGGTGGCAGATTGTGCCTTGAGACTTCCTTGGCATGAATTTGATTCTGGTGATGTATTCACCATGCACAACGAAGCTGAGAAAACTCATGAGTATGAATTCCCTGTCTTGAACCTTGAGGACAAGGTTATTATTGAGGGCGCGAGTATTATTTTGGACTTTACTAAGGGTTGGGTCTGGAAAGCATGGACATCAACTTGGGCCTGCATATAAATTAAGATGCAGTACTAGGTCTGACAACCCAGTAAAAGATTAGAGATTATGATGAGGGGAGCCTGGTCGACTACACATGACTTGGGCTATAAAAGGAAAGCAACCACAGATGGCGGGGCATTGAAGAACTTGTATCTTTATTTTCTTGGCTAAAGTTTTAGCAGTCTGGAACTTCTCTTTTCTGTTTCATCTTGTACTGCAGTACTAGAATTCATCTGTAGCTTTTTCAGTAAAGATGGATCCATTACACAGAGCTAGCTTCATCTAACATATGACTTGACACCTTGATGAATTGAAAATTTGATTTAATCATCAACTAGCATGCACTTGGTTGTTCATGGAGTTCAGTTGACCATCTAGCTCCAACTAAATCCAGTTAGTACTGCCCATTGCATGTATGTATGTTTTTCTCTTTCGGATATGGCAGAGTGAAACCCCCTCACCCACCCCAAAAAAATGAAAACAATTGCCTAGGAGTCCTTTAGGAAACTGCTTGTTGTGACTTGAACTCTTCATCTTTTTGGTTGGAAAGGAAGTGCTCTATCTACTGGAGCAATCTCACTCATCTTCCCTGCTCAAATTTTTACTTTTCTGCATTTCAGAAATTATAATATTCTCTTGTTTATCAGGTCCTACTGGAGTTGGCTAGGAACAGAAACAAGATTCCATTGCCGAAATCAATTGCTGGGTCTGGAGTACCACTCCCTCCTGAACAAGATACACTGATCAACCCTAACTATCAGCTAGCTATTGCAAAGAAGCAAACTAACCAACCAGAAGAAACAGAGGAGGACGAAGAAAGCGCTGATCCCAACCCAGCTCCAAGCAAAAATCCAACTCTTTCTCATGAAAAGACAGACTTACCTCAAGGTACTCCTCAACGAGTATCCTTTCCCCTTGGCGCCAAACGTCCAAGATGATGTCTTATGCTTGATCAGCTTTAGTCACAAGAGCCTTTGTAACCGCCTGCCTATGTATTTAATCGAAGGCATTGTATACTTGTTGTTTGAACATGAAGTATGAAACTTTAAGATCCTTCTGTAACACAGTCAGTATTAGTTTAAATGCTCTCCTTCCAGTATTTATTAGACACAATTAGCAGAGAGTTGAGCTGTAAAATGAAGAATTACCTTGGCATTATCAATAGTTTTCCAACATATTC</genome_strand>
        <mrna_strand>TCAGTGCTTTTTGGTTCTTCGTTTAATCTTTGCCTATTGCTCGAATTGTGGTGAATCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACCTTGAAAGAAATGGCTGAAGGTGGAGAAGAGGACTTGCCAAGGGATGCAAAGATTGTCAAAACGCTGCTAAAATCAATGGGTGTTGATGACTACGAGCCTCGAGTTGTGCATCAATTTTTGGAATTGTGGTATCGCTATGTTGTTGATGTACTGACGGATGCTCAAGTCTACTCAGAGCATGCAGGGAAGGCTTCCATTGACTCTGATGACATCAAGCTTGCCATTCAGTCAAAAGTTAATTTCAGCTTCTCACAACCCCCGCCGCGTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTACTGGAGTTGGCTAGGAACAGAAACAAGATTCCATTGCCGAAATCAATTGCTGGGTCTGGAGTACCACTCCCTCCTGAACAAGATACACTGATCAACCCTAACTATCAGCTAGCTATTGCAAAGAAGCAAACTAACCAACCAGAAGAAACAGAGGAGGACGAAGAAAGCGCTGATCCCAACCCAGCTCCAAGCAAAAATCCAACTCTTTCTCATGAAAAGACAGACTTACCTCAAGGTACTCCTCAACGAGTATCCTTTCCCCTTGGCGCCAAACGTCCAAGATGATGTCTTATGCTTGATCAGCTTTAGTCACAAGAGCCTTTGTAACCGCCTGCCTATGTATTTAATCGAAGGCATTGTATACTTGTTGTTTGAACATGAAGTATGAAACTTTAAGATCCTTCTGTAACACAGTCAGTATTAGTTTAAATGCTCTCCTTCCAGTATTTATTAGACACAATTAGCAGAGAGTTGAGCTGTAAAATGAAGAATTACCTTGGCATTATCAATAGTTTTCCAACATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kd6rNt/sgn_marker_seqs" ref_id="SGN-M6868-2" ref_strand="+" ref_description="SGN-M6868-2 C2_At1g54140-2 [cosii_markers]">
      <seq>cttcatcaaattttatgtatgtatctccttcatcttttgtctgctcagtgcttttggttcttcgtttaatcttgcctcttgctcgaattgtggtgcatcttcggttgaaccttgaaagaaatggctgaaggtggagaagaggacttgccaagggatgcaaagattgtcaaaacgttgctaaaatcaatgggtgttgatgactacgagcctcgagttgtgcaacaatttttggaactgtggtatcgctatgttgttgatgtactgacggatgctcaagtctactcagagcatgcagggaaggcttccattgactctgatgacatcaagcttgccattcagtcaaaagttaatttcagcttctcacaacccccgccgcgtgaggtcctactggagttggctaggaacagaaacaagattccgttgccgaaatcaattgctgggtctggagtaccactccctcctcaacaagatacattgatcaaccctaactatcagctagctattgcaaagaagcaaactagccaaccagaagaaacagaggaggacgaagaaagcgctgatcccaacccagctccaagcaaaaatccaagtctttctcatgaaaagacagacgtacctcaaggtactcctcaacgagtatcctttccccttggcgctaaacgtccaagatgatgtcttatgtttgatcagctttagtcacaagagcctttgtaaccgtctgcctatgtatttaatcaaaggcattgtataattgttgtttaaacatgaagtatgaaactttaagatccttttgtaacagtgagtatcagtttaaatgctcctccttccagtatttatttattagacacaattagcaggagttgagctgtgaaatgaagaattactttggcattatcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-cqpb5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="28628" stop="21417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28363" g_stop="28256" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.843"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28255" i_stop="26977" i_length="1279">
            <donor d_prob="0.743" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26976" g_stop="26699" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="381" r_length="278" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26698" i_stop="22234" i_length="4465">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22233" g_stop="21713" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="904" r_length="523" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-M6868-2" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6868-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28363" e_stop="28256"/>
          <exon e_start="26976" e_stop="26699"/>
          <exon e_start="22233" e_stop="21713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAACTTTTTTTTATGTATGCATCTCCTTTGTTTTTTGTCTGCTCTCAGTGCTTTTTGGTTCTTCGTTTAATCTTTGCCTATTGCTCGAATTGTGGTGAATCTTCGGTAAGTATTCGTATTTGAGGTTCCTTTTTTAGTACTGAATTTGGGGGATTTGTAATTTTGAGTTAGGGTTAAGCTGGCCCTGTATGGAGGTGGAGGTTTATGGTCTTGAATCTTTTGTACTTGAAGGAGGGTTAAAAGGGGTTCAAGACCACCCATTTTTATGGTAATTGGGTGTATTTTGCCCTTTTTTTGAGTTCTATAGCTTCATTAACATTGTTAACTGCTTCTTATGTGATAAAATGGCTCAAATTAACCCTGTGATGATGTACTATTTGGCCTCTTAGTATTGGGTTTGAAGTTATTTGTTTTTTTAGTGTTTTTAGTATGTGATTCTAATAATGGAATTTGTGGAGTTGAAATTGGTTGAATTATACTAGTAGTTTTATTCGTTTGCTTGCTGATATGGTCTATTTTTACCTGTCATGATGTGCTATTCGGTCTTTAAATATGGGATGGAAGTCATAACTTATTAAGTATTTTTACTGTTTCATTCTAATAATTGAATTGTGCGGAGTTGAAATTCGTTGACTTAAAGTAGCACCTTTATTCGATTGCTTGCTGGTATGGACTCTTGGTGTTTTTTTTTCTTGTCCCAGTTATATGGTGTTTTATTTTCTATTAGTTAGTAATAAGAAGCTGAAAAGATTGCTTATTAGCAAGGGAAATGTATGATAGTTTGTGAGGAATGTGTGTTATAATTCTTGTTCAATGCTTCCTTTTTTGAAACTAGAAAATAATTGTAATACTTGTCTCTGATTTTCATTCCCTAGCTCTCCCGTAATGGTTTTATATCTGAAATTTAAGGGTATCCAATGTTGTTGTGTTCCTCCATCTAATAAATTTCGAAACTATTATGGTTCCATTATCACTGCTCTTGAAGTGGAGAAAGGGATCTAATTAATTCCATTTAATGTACTTATTAAACTGTGTTTGAATGTTTCTTTGACCTCAACAGGATTCAATTAGACAGATGGAATTTGGTATTGTTTTATATTTTTAGTTTTATTTTTGTTTTTTCCTTTTCATAGTGCTCTTACTTTATACCTCTAAATATTTTCCGGATTGCTCTTTTGCGTGTATGGAGAAAAGCTGTTTGATGAATGTCTTTCTACATAAGCTCTCACTCTGATGCTTTTCAGAATGTTTGCTATTATGTTTTACAATTTCATGATTTCAACTTGTAGTGCATCACATCTCCATCTCTATCTGGTTTCTGCAACTCTATATTGACACTACTGACGTGTATGAAATGATGCTGATGGTTAATGTTTCTTTTTAGGTTGAACCTTGAAAGAAATGGCTGAAGGTGGAGAAGAGGACTTGCCAAGGGATGCAAAGATTGTCAAAACGCTGCTAAAATCAATGGGTGTTGATGACTACGAGCCTCGAGTTGTGCATCAATTTTTGGAATTGTGGTATCGCTATGTTGTTGATGTACTGACGGATGCTCAAGTCTACTCAGAGCATGCAGGGAAGGCTTCCATTGACTCTGATGACATCAAGCTTGCCATTCAGTCAAAAGTTAATTTCAGCTTCTCACAACCCCCGCCGCGTGAGGTACCAAGTCTTTACTAAATCTTTCATTTTTGTGCTGGTGTTTCATTCTTCCAAGAATGAACTCATATCTTTCTTAGAGACCTTTTAGGTGTATGATGAAACTGATAACCTTTAGCCCTCTCTTGTCTAAGAAAGATAAGTAAAATGGAGTTTCTGAATCAAAGAATTATATGATGTAACTAAATTTTTTGTCTTGGAGTCTTAGGTTGTTCTCTTGTAACGTGTTTCAGAACTTCGGTTGTCATTCGACATAATTATATATTTTAAAGTTATAACTGAAAACAGTGAAAAGGTATCAAACTAATAGGTCATAGTTTGGAAAGTTATCTATTTCAAAATAAAAAAATACATGTCATAGTCTGGTGCTATCATATGTGGTTTATTACCGTGACTGAGAAAAGTTGAACAGCAGGTATTGGTGGCTGAATGCTAGGGTAGTGGTATAGAGATTTTCAGCCTTGTGCAGAACAGAAGATGCTGAAGGTTCTACAGGAATTTTTTTAGGTTGTGAATGGGTTCTGGCATTTTGATTACTTAACAGTTGCTGTTTGTTAGTTGACTAATTCAGAGTATCACAGGATTGGTTAAAAAGTAAAATAAACACTTTTAATCTGCATAGAATTTTCTAGAGTAAAGTCACCAGGTTAAAAATTATCTGTATAGAATTTCCTAGAATAAAGTTACCAAGTTCAAAAAATCTGCATAAGATTTCCTAGACTAATCACACCATTAGAAGGCTGCATAGACACTTCAAAATAAGCAACGACAACTTGACCAATACTGATTCAATCCGAGCTTTTCTTTTTTCTTTTTTTAATTTAAAGGTCCATTGATCATGGAGGTGCAAAAAGTTACAATTTGAGCTTGGCATCCCAAACTTTGTACATGATCATAGAGATGAGACTAACACTCTATTCCTACGCAAAACAAGTGACAATTATTTGAGAGATCAAGGAGGATCATATATGATGTGGCAAGTTTTGCCGGTTTATTCTTAAATGTTGGTAAGCTCCATTTATCCGTATGGACCAGACCTCTTATGTTACTGGGAAGTTCACAGAAGAGATTGAAGGTCTTCACTCCTGCAACTTTATGACTTAGCACTGCTAGTCTGTCCGCCGGTCTATTAGCTTCTCGAAAATAATGGTTGATATTGAAGTCATGATCTTCAATCATCTTCAGGATCTCTTTTATTTGGTTGTAGATTTTCGAAGGAGGTTTCCACTCTTTTCTGGAGCACTTGGCTAGTATCAGGGAATCTGTTTCACCTATCGCCATATCAAAACCTTTGCCAGCACACCATTTCAGTCCAAAACCATAGCCTCAGCTTCTGCCTTCTGCAATGTTGCTAGTTCCAGCTCCTAAGGATATAATGTAGGCAAAAATGAAGTTCCCCTCTTGATCTCTGATGATTCCCCCTCCTCCACACTGCCCCTCTGCAGCTACCAACGCTATTGAGTGTGACTCTGAAAGAAGGAGGTTTGATCCATGCAACTGGAATACTTGTATTGTATTGGACAACCGCATCACAAGCTTGACAAATACTGCTCTAGTTGTCTCTAATTTTGACTGTTACTCCTGATAACATGCACAATACAATTTGTGATATTAGTACTAGTTCTATAAAGTGAGGGCCTAGTCCCCTCAAATTTGTTGCTACAACTTGACTTCCATAGCTCCCAACAAATAGTAGGATGTAGGTTCTTGGAAATGAAATTGGTGATAGGGCTGTTGGATTTGTGGTTCCACCAACTTCGTAGGATCATGTTGAGGTTGTCACTTCTAAATCCAATGTCCAGGACCCTGCAAACTTTCTCCAGATCTTCTTAGCTAGGTCACCTTGACAGAACAAATGTTTGATATCTTTATGCTCAACTCTTGTGTTAGAAAGGCTGCAACAGTAACATTGTGGGTTGAGGGCAATCCCAAGTCTTACAACCTTGTCGTCGGTCGATAGCTTGTTGCTGATAGTTCTCCACAAAAGGAAGGACATGTTAAAAGAAACATCTTTTTTCCATAGGTTGCAATAGATTGGATTTGGATCTCTTTTTTACCTGATAGACCTCCAAGTTGAACCAATGCTAAATTTCCCCGAGTTAGATAGGCTCCAGATGGATTTTTCATTGATATTGCTATCAATCTTGATCTCTATGGAGTTGAGCACCGTTTTGTTGATCTCAGGGAGCTGACTATTGAGATAGTTCCAGCTCCAAAAATATGAATAAAGACCTCATTCAGCAAAAAGCATTCGCTGCAAAGTCCAATGCCCAATTGCTGTACAGTAGAGTTGTATTTTACTAGTTATACCAGATACTCTATTTCACAGGCAACTAGCAGACTATGCACGACTTCTCTTGCCAACATGCTATATCTGTTAATTCTTTGGTTATGATGGGAATGACTCTTATTTCAAGGAAGAATACAATTGTTGAACATCTTCTCCAGATATTTCTTTCTCTGCTGATGGATGAGTCTTCTCAAGTTCGTTTGAATATTATTAGTAAGCTAAAACACGTGAACCAGGGGATTCAAATTGATCAGCTCTCCCAATTCTTTCTGCTAGTTCTTGTTTAACTTACAAGGATAGACACTGGATGGTTCAGCTTGCAATAATATAGTTCATCCCTCTATTGCGGAGTCAGTTGGGTCTTCACTTTTGCAATGACAGACTTGCTGCTCTTCTCTATGCTATACCAGTTCACTACCTAGTTGGATTAAAGCATTTTATCAAAGGATTTTATCCTCATATCCTGGCTATTTGCGCACTATCCAAGTCTATTTTAGGTATCCATTTACATATTTCTTCCTTAATGAGTCCGAAGGAAAGAAAGGGCACCTACAATGCAAATAAAAATTGAATGCAAGGCTATGGAAGGCTACTGCTCACCAGTGGCTCTCAGTGCTCGGTGGATTCGACTGGACTAGCAACAATCTGCTTCCTCCAGATATGTTGCTGTTGTTTACTTAGTATACCCTGGAAGGTCGAAGGTTCCTCCAGACATTATGTTCATTGGATGACTCCGCACATGCTAGTTTTCATCTGAAGAACTATATTATGATCCTCAATGGGGTTGTTTCTTTTCTTGGATTGGTAATGTGGCACAGTCTATCTCAGGTATTAACGGGTTCATTTATAACTTGTGTTTTGCTGGGGTGTTCTTTCGAGCGATACAGTATAACTGGCTAGGTGAATTTTGGTGCATCACTAGCTTTTTTTAGTCAAGTTGCTCATGATACTATAAATGTGAAAGAAGGGGCCTCTTAGGATACTCGAAACTGTTATGAAATCACTGAGACACTGAACAGACATAATTATTTCAGTACCATGATAATTTTAGTGGATGCAGCGTTAGCATTATGGAGATTATTCATTCCCTCTTATTCACTATGATGAAATTAGTAGAAGAAAGATATGCCAAGATATATATCTGCTTTTGAGAAATGAGGAAGAAATGTGTTCGCTGTCATGCTAGAAGAAATGACCATTACTGGTGCAAGGTTTGATATTGCCAGAATTATCCTGGCACTCATCATGTTAGTGTGGGGCCCCATTGAGAAGAAGTCCAATAGAATTACAAACAATGAATTATATTAGTGAAGGTTCAGCAGTGTATTATGTTCCTATGGTGGCAGATTGTGCCTTGAGACTTCCTTGGCATGAATTTGATTCTGGTGATGTATTCACCATGCACAACGAAGCTGAGAAAACTCATGAGTATGAATTCCCTGTCTTGAACCTTGAGGACAAGGTTATTATTGAGGGCGCGAGTATTATTTTGGACTTTACTAAGGGTTGGGTCTGGAAAGCATGGACATCAACTTGGGCCTGCATATAAATTAAGATGCAGTACTAGGTCTGACAACCCAGTAAAAGATTAGAGATTATGATGAGGGGAGCCTGGTCGACTACACATGACTTGGGCTATAAAAGGAAAGCAACCACAGATGGCGGGGCATTGAAGAACTTGTATCTTTATTTTCTTGGCTAAAGTTTTAGCAGTCTGGAACTTCTCTTTTCTGTTTCATCTTGTACTGCAGTACTAGAATTCATCTGTAGCTTTTTCAGTAAAGATGGATCCATTACACAGAGCTAGCTTCATCTAACATATGACTTGACACCTTGATGAATTGAAAATTTGATTTAATCATCAACTAGCATGCACTTGGTTGTTCATGGAGTTCAGTTGACCATCTAGCTCCAACTAAATCCAGTTAGTACTGCCCATTGCATGTATGTATGTTTTTCTCTTTCGGATATGGCAGAGTGAAACCCCCTCACCCACCCCAAAAAAATGAAAACAATTGCCTAGGAGTCCTTTAGGAAACTGCTTGTTGTGACTTGAACTCTTCATCTTTTTGGTTGGAAAGGAAGTGCTCTATCTACTGGAGCAATCTCACTCATCTTCCCTGCTCAAATTTTTACTTTTCTGCATTTCAGAAATTATAATATTCTCTTGTTTATCAGGTCCTACTGGAGTTGGCTAGGAACAGAAACAAGATTCCATTGCCGAAATCAATTGCTGGGTCTGGAGTACCACTCCCTCCTGAACAAGATACACTGATCAACCCTAACTATCAGCTAGCTATTGCAAAGAAGCAAACTAACCAACCAGAAGAAACAGAGGAGGACGAAGAAAGCGCTGATCCCAACCCAGCTCCAAGCAAAAATCCAACTCTTTCTCATGAAAAGACAGACTTACCTCAAGGTACTCCTCAACGAGTATCCTTTCCCCTTGGCGCCAAACGTCCAAGATGATGTCTTATGCTTGATCAGCTTTAGTCACAAGAGCCTTTGTAACCGCCTGCCTATGTATTTAATCGAAGGCATTGTATACTTGTTGTTTGAACATGAAGTATGAAACTTTAAGATCCTTCTGTAACACAGTCAGTATTAGTTTAAATGCT-CTCCTTCCAG----TATTTATTAGACACAATTAGCAGAGAGTTGAGCTGTAAAATGAAGAATTACCTTGGCATTATCAATAGTTT</genome_strand>
        <mrna_strand>CTTCATC-AAATTTTATGTATGTATCTCCTTCATCTTTTGTCTG--CTCAGTGC-TTTTGGTTCTTCGTTTAATC-TTGCCTCTTGCTCGAATTGTGGTGCATCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACCTTGAAAGAAATGGCTGAAGGTGGAGAAGAGGACTTGCCAAGGGATGCAAAGATTGTCAAAACGTTGCTAAAATCAATGGGTGTTGATGACTACGAGCCTCGAGTTGTGCAACAATTTTTGGAACTGTGGTATCGCTATGTTGTTGATGTACTGACGGATGCTCAAGTCTACTCAGAGCATGCAGGGAAGGCTTCCATTGACTCTGATGACATCAAGCTTGCCATTCAGTCAAAAGTTAATTTCAGCTTCTCACAACCCCCGCCGCGTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTACTGGAGTTGGCTAGGAACAGAAACAAGATTCCGTTGCCGAAATCAATTGCTGGGTCTGGAGTACCACTCCCTCCTCAACAAGATACATTGATCAACCCTAACTATCAGCTAGCTATTGCAAAGAAGCAAACTAGCCAACCAGAAGAAACAGAGGAGGACGAAGAAAGCGCTGATCCCAACCCAGCTCCAAGCAAAAATCCAAGTCTTTCTCATGAAAAGACAGACGTACCTCAAGGTACTCCTCAACGAGTATCCTTTCCCCTTGGCGCTAAACGTCCAAGATGATGTCTTATGTTTGATCAGCTTTAGTCACAAGAGCCTTTGTAACCGTCTGCCTATGTATTTAATCAAAGGCATTGTATAATTGTTGTTTAAACATGAAGTATGAAACTTTAAGATCCTTTTGT-A-ACAGTGAGTATCAGTTTAAATGCTCCTCCTTCCAGTATTTATTTATTAGACACAATTAGCAG-GAGTTGAGCTGTGAAATGAAGAATTACTTTGGCATTATCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kd6rNt/sgn_marker_seqs" ref_id="SGN-M199-F" ref_strand="+" ref_description="SGN-M199-F TG483-F [rflp_markers_forward]">
      <seq>aaatggtaaatttgtgttagaaatagagaaaacattaattgctagtataactttgatctgaagttttcttcttttcttttgtccctccactcccatggcagataaaaaatggaattattgcaatagcagtgaaggtaggaatctcctaatctgtgaggtctttttattagtgatttcacatgtaaacattatacatgtgggattcgtgattttttttggtcactctatacgagatcaattgatgacttgagaacccctcaaaacactaaactctatacttctgaatcttttcaggttgctgctattggactgaacccctcaaaacacttgggaaaagagatagcatacctggagccccatctccacaagctaaaagagtatgatatggttagcaaaaattttggctttgttttacttcacttttttcgcatttttacgtcaatttttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-cqpb5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="34382" stop="33332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34082" g_stop="33632" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-M199-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M199-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34082" e_stop="33632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTAAATTTGTGTTAGAAATAGAGAAAACATTAATTGCTAGTATAACTTTGATCTGAAGTTTTCTTCTTTTCTTTTGTCCCTCCACTCCCATGGCAGATAAAAAATGGAATTATTGCAATAGCAGTGAAGGTAGGAATCTCCTAATCTGTGAGGTCTTTTTATTAGTGATTTCACATGTAAACATTATACATGTGGGATTCGTGATTTTTTTTGGTCACTCTATACGAGATCAATTGATGACTTGAGAACCCCTCAAAACACTAAACTCTATACTTCTGAATCTTTTCAGGTTGCTGCTATTGGACTGAACCCCTCAAAACACTTGGGAAAAGAGATAGCATACCTGGAGCCCCATCTCCACAAGCTAAAAGAGTATGATATGGTTAGCAAAAATTTTGGCTTTGTTTTACTTCACTTTTTTCGCATTTTTACGTCAATTTTTTTGG</genome_strand>
        <mrna_strand>AAATGGTAAATTTGTGTTAGAAATAGAGAAAACATTAATTGCTAGTATAACTTTGATCTGAAGTTTTCTTCTTTTCTTTTGTCCCTCCACTCCCATGGCAGATAAAAAATGGAATTATTGCAATAGCAGTGAAGGTAGGAATCTCCTAATCTGTGAGGTCTTTTTATTAGTGATTTCACATGTAAACATTATACATGTGGGATTCGTGATTTTTTTTGGTCACTCTATACGAGATCAATTGATGACTTGAGAACCCCTCAAAACACTAAACTCTATACTTCTGAATCTTTTCAGGTTGCTGCTATTGGACTGAACCCCTCAAAACACTTGGGAAAAGAGATAGCATACCTGGAGCCCCATCTCCACAAGCTAAAAGAGTATGATATGGTTAGCAAAAATTTTGGCTTTGTTTTACTTCACTTTTTTCGCATTTTTACGTCAATTTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kd6rNt/sgn_marker_seqs" ref_id="SGN-M6547" ref_strand="+" ref_description="SGN-M6547 C2_At1g08620 [cosii_markers]">
      <seq>ttccctaaacatgaccatcaagttggctcttctgacaccaagtatctgaactcatggtggaacttgaataattttccaaggcttaccggttctgttcttacatatgagagcagtgatatatctggtgtcttggtgccgtggctgtacataggaatgtgcttttcatcgttctgttggcatgttgaagatcaccatttatactcattaaattacatgcatttcggggctccaaaaatgtggtatggtgtgcctggcgcagatgcatcaaagttggaggctgctatgaggaaacacttacctgatctctttgaagagcagccagatcttcttcacaagctggttacacaactatctccctccatattgaagtctgagggagtcccagtgtatcgttgtgtgcaaaatcctggagagtttgttttgaccttcccaagagcatatcatgctggtttcaattgtggcttcaattgtgctgaagcagtaaatgttgctcctgttgattggttaccccatgggcagaatgcgattgagcattaccgcgagcaaggacggaaaacttccatatcccatgataaactattattaggagcagctcgagatgcagtcaaagcgcactgggaacttaatttattgaggaagaatacctcaaataatttaagatggaaagatgtttgcggaaaagatggagttttgtcaaaagcattgaagaaccgagttgagatggagagagtcaggagggagtttctttgcaattcttcacaagcactaaagatggagagcacttttgatgctactaatgagagggaatgtagtgtgtgtttttttgatctacacctgtccgcagccggctgtcacaattgttcgcccgacaaatatgcatgcttgaaccatgcaaaacaactgtgtacttgttcctggggtgccaaatttttcctcttccgttatgacatcaatgaattaaatgtactagttgatgctttagaagggaaattgagtgcaatttatcgatgggcaagacaagatcttggattagctttgagttcttatgtaaataaagagcggcaagttgcagggattgctggtaaattatctcttaaacctgaggaatcagtgctaaaagaggcaagtgcaggaccctctatagcttccgtgaaaaaggaaaaagatgatggaacttcagcactcttgatgaaggccagcagcagtgctttttcaccgcataaagataaactatccagggagccattagcttcagaatcaatcaaggcgtcctctatgcctgacaatgcttctcatggaattgagggggcacagaatggcttccagggcagaagtgatcctttaaggtgggtcctgtttatagaactccagttactcagctgtccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-cqpb5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="110067" stop="113389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110367" g_stop="110543" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110544" i_stop="111189" i_length="646">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111190" g_stop="111351" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="339" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111352" i_stop="111724" i_length="373">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111725" g_stop="112093" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="708" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112094" i_stop="112409" i_length="316">
            <donor d_prob="0.704" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112410" g_stop="113089" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="1387" r_length="679" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-M6547" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1388</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110367" e_stop="110543"/>
          <exon e_start="111190" e_stop="111351"/>
          <exon e_start="111725" e_stop="112093"/>
          <exon e_start="112410" e_stop="113089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTAAACATGACCATCAAGTTGGCTCTTCTGACACCAAGTATCTGAACTCAGGGTGGAACTTGAATAATTTTCCAAGGCTTACCGGTTCTGTTCTTACATATGAGAGCAGTGATATATCTGGTGTCTTGGTGCCGTGGCTGTACATAGGAATGTGCTTTTCATCGTTCTGTTGGGTAAGTGAAATAGTTCCCCTCAATTGCTTCATAATGTACTGTGGTAAACTGAAGTTTATTGGGTGCAATTACCTGAGCAACTCTTTCTGTGGACTGCGTAGATCTGCAGGTGCTTCTTTCTTTTTAATAGGTTGCTCTGACATGTTGAAAAATAATTAGCACTTACCTTTTTCATATGCATCTTTCCTACAATTTTGTTTTGAGCCCGTAAGCTTCTTTACTACAAAATCTTCCACTTATGCTAAAAAACTTCTAAATAATGTTTTTTTTTCAGAAAAAGAACTTGTAAAACCTTCAATAAGACTAGAAATATGCATAATTGCTGATCGAATAAATCTCCTGATCATGTTTATTGAACTATTGATGGGTGGTATTAGTGATTGCTTGATTGTGATTATTCCTTCCTCTTGCATTGCGGAGTAAAGGCAGTATTCTTGAGTTCATATTTTTGGAAAATAAGTACCATTTGTTATTGGGTCAGCTCTTGATAATCCTTTTCTCTTGAATTGGGTAACCCTAATTTAGTTAGCTTGAAATATATGATTTGGATGATCATTCTTTTCTTTAATAACCTGAAAATATAACAAACCTTGGGCTTTTCTCTTATTTACTAACCAATTCTCTTTTCTAAATTTTTACTCGACAGCATGTTGAAGATCACCATTTATACTCATTAAATTACATGCATTTCGGGGCTCCAAAAATGTGGTATGGTGTGCCTGGCGCAGATGCATCAAAGTTGGAGGCTGCTATGAGGAAACACTTACCTGATCTCTTTGAAGAGCAGCCAGATCTTCTTCACAAGCTGGTGAGCCCAATCTTCATTTTATCAAAAAAGTAATTGAATCCTAATTACTTGTCTCTTTGTTGGTAATCTTTGTTTAAAAATGACTTACTTTGCTGAAGAACCTCTACTACTGCCACGTCTTTTTAGGGTTGTGAGCTACAGGTGACATGTGATCCCATTCATAGTGTTGCAATGCTATAGGGTCCTCATTAAATTGAAGTGTAAACAAGAAACTGTCTTACTGTAAATCTTACTCTTCTTGTGGAAGATTTGTCTGATGAGTCATGTAGTAGATTGTTCTTTACAAATCTGACAGTTAATTTGCTTCATAGAAGTTGGAACATCTCCTTATAGGTGGCTTATTTTTTTAAATAATAACCTATTATTTATGCAGGTTACACAACTATCTCCCTCCATATTGAAGTCTGAGGGAGTCCCAGTGTATCGTTGTGTGCAAAATCCTGGAGAGTTTGTTTTGACCTTCCCAAGAGCATATCATGCTGGTTTCAATTGTGGCTTCAATTGTGCTGAAGCAGTAAATGTTGCTCCTGTTGATTGGTTACCCCATGGGCAGAATGCGATTGAGCATTACCGCGAGCAAGGACGGAAAACTTCCATATCCCATGATAAACTATTATTAGGAGCAGCTCGAGATGCAGTCAAAGCGCACTGGGAACTTAATTTATTGAGGAAGAATACCTCAAATAATTTAAGATGGAAAGATGTTTGCGGAAAAGATGGAGTTTTGTCAAAAGCATTGAAGGTAGAATTTTTCGAATAGAATAGTTGCATTCTTTAGGCAAATGTGCACATAGTGACGCCCTTATTCTATCTATAGATAGTCCTTAATTCCTTTTCCATTTCCCTCTGTTTTTACTTTTGTTGCATTGAGGGTGTATTTTCCTATCTTCTTCCTTGTATTCTTTTTTTAAAATAGAAGGGTGGGGTGGGGGGTGATTGGGGTTAGACCGACACTTATAGGGGTTATCACACTGATACCACATTTAAGTTCTATGTTCATATAAATTATGTTACTAAGCCTAGTATACAACTTCACTGCTAAGTTATGTTTTGTGCAGAACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGCCATTAGCTTCAGAATCAATCAAGGCGTCCTCTATGCCTGACAATGCTTCTCATGGAATTGAGGGGGCACAGAATGGCTTCCAGGGCAGAAGTGAATCCTTAAAGGTGGGTCCTGTTTATAGAACTCCAGTTACTCAGCTGTCCGT</genome_strand>
        <mrna_strand>TTCCCTAAACATGACCATCAAGTTGGCTCTTCTGACACCAAGTATCTGAACTCATGGTGGAACTTGAATAATTTTCCAAGGCTTACCGGTTCTGTTCTTACATATGAGAGCAGTGATATATCTGGTGTCTTGGTGCCGTGGCTGTACATAGGAATGTGCTTTTCATCGTTCTGTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTTGAAGATCACCATTTATACTCATTAAATTACATGCATTTCGGGGCTCCAAAAATGTGGTATGGTGTGCCTGGCGCAGATGCATCAAAGTTGGAGGCTGCTATGAGGAAACACTTACCTGATCTCTTTGAAGAGCAGCCAGATCTTCTTCACAAGCTG.....................................................................................................................................................................................................................................................................................................................................................................................GTTACACAACTATCTCCCTCCATATTGAAGTCTGAGGGAGTCCCAGTGTATCGTTGTGTGCAAAATCCTGGAGAGTTTGTTTTGACCTTCCCAAGAGCATATCATGCTGGTTTCAATTGTGGCTTCAATTGTGCTGAAGCAGTAAATGTTGCTCCTGTTGATTGGTTACCCCATGGGCAGAATGCGATTGAGCATTACCGCGAGCAAGGACGGAAAACTTCCATATCCCATGATAAACTATTATTAGGAGCAGCTCGAGATGCAGTCAAAGCGCACTGGGAACTTAATTTATTGAGGAAGAATACCTCAAATAATTTAAGATGGAAAGATGTTTGCGGAAAAGATGGAGTTTTGTCAAAAGCATTGAAG............................................................................................................................................................................................................................................................................................................................AACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGCCATTAGCTTCAGAATCAATCAAGGCGTCCTCTATGCCTGACAATGCTTCTCATGGAATTGAGGGGGCACAGAATGGCTTCCAGGGCAGAAGTG-ATCCTTTAAGGTGGGTCCTGTTTATAGAACTCCAGTTACTCAGCTGTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="28363" PGL_stop="21701"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28363" e_stop="28256"/>
            <exon e_start="26976" e_stop="26699"/>
            <exon e_start="22233" e_stop="21701"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.743" acc_prob="1.000" e_score="0.843"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.843">
            <gDNA_exon_boundary e_start="28363" e_stop="28256" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.743" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28255" i_stop="26977" i_length="1279"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26976" e_stop="26699" e_length="278"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26698" i_stop="22234" i_length="4465"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22233" e_stop="21701" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28363" stop="28256"/>
              <exon start="26976" stop="26699"/>
              <exon start="22233" stop="21713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6868-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28316" stop="28256"/>
              <exon start="26976" stop="26699"/>
              <exon start="22233" stop="21701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6868" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATGAACTTTTTTTTATGTATGCATCTCCTTTGTTTTTTGTCTGCTCTCAGTGCTTTTTGGTTCTTCGTTTAATCTTTGCCTATTGCTCGAATTGTGGTGAATCTTCG : GTTGAACCTTGAAAGAAATGGCTGAAGGTGGAGAAGAGGACTTGCCAAGGGATGCAAAGATTGTCAAAACGCTGCTAAAATCAATGGGTGTTGATGACTACGAGCCTCGAGTTGTGCATCAATTTTTGGAATTGTGGTATCGCTATGTTGTTGATGTACTGACGGATGCTCAAGTCTACTCAGAGCATGCAGGGAAGGCTTCCATTGACTCTGATGACATCAAGCTTGCCATTCAGTCAAAAGTTAATTTCAGCTTCTCACAACCCCCGCCGCGTGAG : GTCCTACTGGAGTTGGCTAGGAACAGAAACAAGATTCCATTGCCGAAATCAATTGCTGGGTCTGGAGTACCACTCCCTCCTGAACAAGATACACTGATCAACCCTAACTATCAGCTAGCTATTGCAAAGAAGCAAACTAACCAACCAGAAGAAACAGAGGAGGACGAAGAAAGCGCTGATCCCAACCCAGCTCCAAGCAAAAATCCAACTCTTTCTCATGAAAAGACAGACTTACCTCAAGGTACTCCTCAACGAGTATCCTTTCCCCTTGGCGCCAAACGTCCAAGATGATGTCTTATGCTTGATCAGCTTTAGTCACAAGAGCCTTTGTAACCGCCTGCCTATGTATTTAATCGAAGGCATTGTATACTTGTTGTTTGAACATGAAGTATGAAACTTTAAGATCCTTCTGTAACACAGTCAGTATTAGTTTAAATGCTCTCCTTCCAGTATTTATTAGACACAATTAGCAGAGAGTTGAGCTGTAAAATGAAGAATTACCTTGGCATTATCAATAGTTTTCCAACATATTC</gDNA_template>
            <first_frame> H  E  L  F  F  M  Y  A  S  P  L  F  F  V  C  S  Q  C  F  L  V  L  R  L  I  F  A  Y  C  S  N  C  G  E  S  S  :  V  E  P  *  K  K  W  L  K  V  E  K  R  T  C  Q  G  M  Q  R  L  S  K  R  C  *  N  Q  W  V  L  M  T  T  S  L  E  L  C  I  N  F  W  N  C  G  I  A  M  L  L  M  Y  *  R  M  L  K  S  T  Q  S  M  Q  G  R  L  P  L  T  L  M  T  S  S  L  P  F  S  Q  K  L  I  S  A  S  H  N  P  R  R  V  R :   S  Y  W  S  W  L  G  T  E  T  R  F  H  C  R  N  Q  L  L  G  L  E  Y  H  S  L  L  N  K  I  H  *  S  T  L  T  I  S  *  L  L  Q  R  S  K  L  T  N  Q  K  K  Q  R  R  T  K  K  A  L  I  P  T  Q  L  Q  A  K  I  Q  L  F  L  M  K  R  Q  T  Y  L  K  V  L  L  N  E  Y  P  F  P  L  A  P  N  V  Q  D  D  V  L  C  L  I  S  F  S  H  K  S  L  C  N  R  L  P  M  Y  L  I  E  G  I  V  Y  L  L  F  E  H  E  V  *  N  F  K  I  L  L  *  H  S  Q  Y  *  F  K  C  S  P  S  S  I  Y  *  T  Q  L  A  E  S  *  A  V  K  *  R  I  T  L  A  L  S  I  V  F  Q  H  I  </first_frame>
            <second_frame>  M  N  F  F  L  C  M  H  L  L  C  F  L  S  A  L  S  A  F  W  F  F  V  *  S  L  P  I  A  R  I  V  V  N  L  R :   L  N  L  E  R  N  G  *  R  W  R  R  G  L  A  K  G  C  K  D  C  Q  N  A  A  K  I  N  G  C  *  *  L  R  A  S  S  C  A  S  I  F  G  I  V  V  S  L  C  C  *  C  T  D  G  C  S  S  L  L  R  A  C  R  E  G  F  H  *  L  *  *  H  Q  A  C  H  S  V  K  S  *  F  Q  L  L  T  T  P  A  A  *   : G  P  T  G  V  G  *  E  Q  K  Q  D  S  I  A  E  I  N  C  W  V  W  S  T  T  P  S  *  T  R  Y  T  D  Q  P  *  L  S  A  S  Y  C  K  E  A  N  *  P  T  R  R  N  R  G  G  R  R  K  R  *  S  Q  P  S  S  K  Q  K  S  N  S  F  S  *  K  D  R  L  T  S  R  Y  S  S  T  S  I  L  S  P  W  R  Q  T  S  K  M  M  S  Y  A  *  S  A  L  V  T  R  A  F  V  T  A  C  L  C  I  *  S  K  A  L  Y  T  C  C  L  N  M  K  Y  E  T  L  R  S  F  C  N  T  V  S  I  S  L  N  A  L  L  P  V  F  I  R  H  N  *  Q  R  V  E  L  *  N  E  E  L  P  W  H  Y  Q  *  F  S  N  I  F </second_frame>
            <third_frame>   *  T  F  F  Y  V  C  I  S  F  V  F  C  L  L  S  V  L  F  G  S  S  F  N  L  C  L  L  L  E  L  W  *  I  F   : G  *  T  L  K  E  M  A  E  G  G  E  E  D  L  P  R  D  A  K  I  V  K  T  L  L  K  S  M  G  V  D  D  Y  E  P  R  V  V  H  Q  F  L  E  L  W  Y  R  Y  V  V  D  V  L  T  D  A  Q  V  Y  S  E  H  A  G  K  A  S  I  D  S  D  D  I  K  L  A  I  Q  S  K  V  N  F  S  F  S  Q  P  P  P  R  E  :  V  L  L  E  L  A  R  N  R  N  K  I  P  L  P  K  S  I  A  G  S  G  V  P  L  P  P  E  Q  D  T  L  I  N  P  N  Y  Q  L  A  I  A  K  K  Q  T  N  Q  P  E  E  T  E  E  D  E  E  S  A  D  P  N  P  A  P  S  K  N  P  T  L  S  H  E  K  T  D  L  P  Q  G  T  P  Q  R  V  S  F  P  L  G  A  K  R  P  R  *  C  L  M  L  D  Q  L  *  S  Q  E  P  L  *  P  P  A  Y  V  F  N  R  R  H  C  I  L  V  V  *  T  *  S  M  K  L  *  D  P  S  V  T  Q  S  V  L  V  *  M  L  S  F  Q  Y  L  L  D  T  I  S  R  E  L  S  C  K  M  K  N  Y  L  G  I  I  N  S  F  P  T  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26971" stop="26699"/>
                    <exon start="22233" stop="21943"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLKEMAEGGEEDLPRDAKIVKTLLKSMGVDDYEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKASIDSDDIKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPKSIAGSGVPLPPEQDTLINPNYQLAIAKKQTNQPEETEEDEESADPNPAPSKNPTLSHEKTDLPQGTPQRVSFPLGAKRPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="34082" PGL_stop="33632"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34082" e_stop="33632"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34082" e_stop="33632" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34082" stop="33632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M199-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATGGTAAATTTGTGTTAGAAATAGAGAAAACATTAATTGCTAGTATAACTTTGATCTGAAGTTTTCTTCTTTTCTTTTGTCCCTCCACTCCCATGGCAGATAAAAAATGGAATTATTGCAATAGCAGTGAAGGTAGGAATCTCCTAATCTGTGAGGTCTTTTTATTAGTGATTTCACATGTAAACATTATACATGTGGGATTCGTGATTTTTTTTGGTCACTCTATACGAGATCAATTGATGACTTGAGAACCCCTCAAAACACTAAACTCTATACTTCTGAATCTTTTCAGGTTGCTGCTATTGGACTGAACCCCTCAAAACACTTGGGAAAAGAGATAGCATACCTGGAGCCCCATCTCCACAAGCTAAAAGAGTATGATATGGTTAGCAAAAATTTTGGCTTTGTTTTACTTCACTTTTTTCGCATTTTTACGTCAATTTTTTTGG</gDNA_template>
            <first_frame> K  W  *  I  C  V  R  N  R  E  N  I  N  C  *  Y  N  F  D  L  K  F  S  S  F  L  L  S  L  H  S  H  G  R  *  K  M  E  L  L  Q  *  Q  *  R  *  E  S  P  N  L  *  G  L  F  I  S  D  F  T  C  K  H  Y  T  C  G  I  R  D  F  F  W  S  L  Y  T  R  S  I  D  D  L  R  T  P  Q  N  T  K  L  Y  T  S  E  S  F  Q  V  A  A  I  G  L  N  P  S  K  H  L  G  K  E  I  A  Y  L  E  P  H  L  H  K  L  K  E  Y  D  M  V  S  K  N  F  G  F  V  L  L  H  F  F  R  I  F  T  S  I  F  L  </first_frame>
            <second_frame>  N  G  K  F  V  L  E  I  E  K  T  L  I  A  S  I  T  L  I  *  S  F  L  L  F  F  C  P  S  T  P  M  A  D  K  K  W  N  Y  C  N  S  S  E  G  R  N  L  L  I  C  E  V  F  L  L  V  I  S  H  V  N  I  I  H  V  G  F  V  I  F  F  G  H  S  I  R  D  Q  L  M  T  *  E  P  L  K  T  L  N  S  I  L  L  N  L  F  R  L  L  L  L  D  *  T  P  Q  N  T  W  E  K  R  *  H  T  W  S  P  I  S  T  S  *  K  S  M  I  W  L  A  K  I  L  A  L  F  Y  F  T  F  F  A  F  L  R  Q  F  F  W </second_frame>
            <third_frame>   M  V  N  L  C  *  K  *  R  K  H  *  L  L  V  *  L  *  S  E  V  F  F  F  S  F  V  P  P  L  P  W  Q  I  K  N  G  I  I  A  I  A  V  K  V  G  I  S  *  S  V  R  S  F  Y  *  *  F  H  M  *  T  L  Y  M  W  D  S  *  F  F  L  V  T  L  Y  E  I  N  *  *  L  E  N  P  S  K  H  *  T  L  Y  F  *  I  F  S  G  C  C  Y  W  T  E  P  L  K  T  L  G  K  R  D  S  I  P  G  A  P  S  P  Q  A  K  R  V  *  Y  G  *  Q  K  F  W  L  C  F  T  S  L  F  S  H  F  Y  V  N  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33926" stop="33633"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLFISDFTCKHYTCGIRDFFWSLYTRSIDDLRTPQNTKLYTSESFQVAAIGLNPSKHLGKEIAYLEPHLHKLKEYDMVSKNFGFVLLHFFRIFTSIFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="110367" PGL_stop="113089"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110367" e_stop="110543"/>
            <exon e_start="111190" e_stop="111351"/>
            <exon e_start="111725" e_stop="112093"/>
            <exon e_start="112410" e_stop="113089"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.556" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.704" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="110367" e_stop="110543" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.556">
            <gDNA_intron_boundary i_start="110544" i_stop="111189" i_length="646"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111190" e_stop="111351" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="111352" i_stop="111724" i_length="373"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111725" e_stop="112093" e_length="369"/>
          </exon>
          <intron i_serial="3" don_prob="0.704" acc_prob="0.992">
            <gDNA_intron_boundary i_start="112094" i_stop="112409" i_length="316"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="112410" e_stop="113089" e_length="680"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110367" stop="110543"/>
              <exon start="111190" stop="111351"/>
              <exon start="111725" stop="112093"/>
              <exon start="112410" stop="113089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6547" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCCTAAACATGACCATCAAGTTGGCTCTTCTGACACCAAGTATCTGAACTCAGGGTGGAACTTGAATAATTTTCCAAGGCTTACCGGTTCTGTTCTTACATATGAGAGCAGTGATATATCTGGTGTCTTGGTGCCGTGGCTGTACATAGGAATGTGCTTTTCATCGTTCTGTTGG : CATGTTGAAGATCACCATTTATACTCATTAAATTACATGCATTTCGGGGCTCCAAAAATGTGGTATGGTGTGCCTGGCGCAGATGCATCAAAGTTGGAGGCTGCTATGAGGAAACACTTACCTGATCTCTTTGAAGAGCAGCCAGATCTTCTTCACAAGCTG : GTTACACAACTATCTCCCTCCATATTGAAGTCTGAGGGAGTCCCAGTGTATCGTTGTGTGCAAAATCCTGGAGAGTTTGTTTTGACCTTCCCAAGAGCATATCATGCTGGTTTCAATTGTGGCTTCAATTGTGCTGAAGCAGTAAATGTTGCTCCTGTTGATTGGTTACCCCATGGGCAGAATGCGATTGAGCATTACCGCGAGCAAGGACGGAAAACTTCCATATCCCATGATAAACTATTATTAGGAGCAGCTCGAGATGCAGTCAAAGCGCACTGGGAACTTAATTTATTGAGGAAGAATACCTCAAATAATTTAAGATGGAAAGATGTTTGCGGAAAAGATGGAGTTTTGTCAAAAGCATTGAAG : AACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGCCATTAGCTTCAGAATCAATCAAGGCGTCCTCTATGCCTGACAATGCTTCTCATGGAATTGAGGGGGCACAGAATGGCTTCCAGGGCAGAAGTGAATCCTTAAAGGTGGGTCCTGTTTATAGAACTCCAGTTACTCAGCTGTCCGT</gDNA_template>
            <first_frame> F  P  K  H  D  H  Q  V  G  S  S  D  T  K  Y  L  N  S  G  W  N  L  N  N  F  P  R  L  T  G  S  V  L  T  Y  E  S  S  D  I  S  G  V  L  V  P  W  L  Y  I  G  M  C  F  S  S  F  C  W  :  H  V  E  D  H  H  L  Y  S  L  N  Y  M  H  F  G  A  P  K  M  W  Y  G  V  P  G  A  D  A  S  K  L  E  A  A  M  R  K  H  L  P  D  L  F  E  E  Q  P  D  L  L  H  K  L  :  V  T  Q  L  S  P  S  I  L  K  S  E  G  V  P  V  Y  R  C  V  Q  N  P  G  E  F  V  L  T  F  P  R  A  Y  H  A  G  F  N  C  G  F  N  C  A  E  A  V  N  V  A  P  V  D  W  L  P  H  G  Q  N  A  I  E  H  Y  R  E  Q  G  R  K  T  S  I  S  H  D  K  L  L  L  G  A  A  R  D  A  V  K  A  H  W  E  L  N  L  L  R  K  N  T  S  N  N  L  R  W  K  D  V  C  G  K  D  G  V  L  S  K  A  L  K  :  N  R  V  E  M  E  R  V  R  R  E  F  L  C  N  S  S  Q  A  L  K  M  E  S  T  F  D  A  T  N  E  R  E  C  S  V  C  F  F  D  L  H  L  S  A  A  G  C  H  N  C  S  P  D  K  Y  A  C  L  N  H  A  K  Q  L  C  T  C  S  W  G  A  K  F  F  L  F  R  Y  D  I  N  E  L  N  V  L  V  D  A  L  E  G  K  L  S  A  I  Y  R  W  A  R  Q  D  L  G  L  A  L  S  S  Y  V  N  K  E  R  Q  V  A  G  I  A  G  K  L  S  L  K  P  E  E  S  V  L  K  E  A  S  A  G  P  S  I  A  S  V  K  K  E  K  D  D  G  T  S  A  L  L  M  K  A  S  S  S  A  F  S  P  H  K  D  K  L  S  R  E  P  L  A  S  E  S  I  K  A  S  S  M  P  D  N  A  S  H  G  I  E  G  A  Q  N  G  F  Q  G  R  S  E  S  L  K  V  G  P  V  Y  R  T  P  V  T  Q  L  S   </first_frame>
            <second_frame>  S  L  N  M  T  I  K  L  A  L  L  T  P  S  I  *  T  Q  G  G  T  *  I  I  F  Q  G  L  P  V  L  F  L  H  M  R  A  V  I  Y  L  V  S  W  C  R  G  C  T  *  E  C  A  F  H  R  S  V  G :   M  L  K  I  T  I  Y  T  H  *  I  T  C  I  S  G  L  Q  K  C  G  M  V  C  L  A  Q  M  H  Q  S  W  R  L  L  *  G  N  T  Y  L  I  S  L  K  S  S  Q  I  F  F  T  S  W :   L  H  N  Y  L  P  P  Y  *  S  L  R  E  S  Q  C  I  V  V  C  K  I  L  E  S  L  F  *  P  S  Q  E  H  I  M  L  V  S  I  V  A  S  I  V  L  K  Q  *  M  L  L  L  L  I  G  Y  P  M  G  R  M  R  L  S  I  T  A  S  K  D  G  K  L  P  Y  P  M  I  N  Y  Y  *  E  Q  L  E  M  Q  S  K  R  T  G  N  L  I  Y  *  G  R  I  P  Q  I  I  *  D  G  K  M  F  A  E  K  M  E  F  C  Q  K  H  *  R :   T  E  L  R  W  R  E  S  G  G  S  F  F  A  I  L  H  K  H  *  R  W  R  A  L  L  M  L  L  M  R  G  N  V  V  C  V  F  L  I  Y  T  C  P  Q  P  A  V  T  I  V  R  P  T  N  M  H  A  *  T  M  Q  N  N  C  V  L  V  P  G  V  P  N  F  S  S  S  V  M  T  S  M  N  *  M  Y  *  L  M  L  *  K  G  N  *  V  Q  F  I  D  G  Q  D  K  I  L  D  *  L  *  V  L  M  *  I  K  S  G  K  L  Q  G  L  L  V  N  Y  L  L  N  L  R  N  Q  C  *  K  R  Q  V  Q  D  P  L  *  L  P  *  K  R  K  K  M  M  E  L  Q  H  S  *  *  R  P  A  A  V  L  F  H  R  I  K  I  N  Y  P  G  S  H  *  L  Q  N  Q  S  R  R  P  L  C  L  T  M  L  L  M  E  L  R  G  H  R  M  A  S  R  A  E  V  N  P  *  R  W  V  L  F  I  E  L  Q  L  L  S  C  P  </second_frame>
            <third_frame>   P  *  T  *  P  S  S  W  L  F  *  H  Q  V  S  E  L  R  V  E  L  E  *  F  S  K  A  Y  R  F  C  S  Y  I  *  E  Q  *  Y  I  W  C  L  G  A  V  A  V  H  R  N  V  L  F  I  V  L  L   : A  C  *  R  S  P  F  I  L  I  K  L  H  A  F  R  G  S  K  N  V  V  W  C  A  W  R  R  C  I  K  V  G  G  C  Y  E  E  T  L  T  *  S  L  *  R  A  A  R  S  S  S  Q  A   : G  Y  T  T  I  S  L  H  I  E  V  *  G  S  P  S  V  S  L  C  A  K  S  W  R  V  C  F  D  L  P  K  S  I  S  C  W  F  Q  L  W  L  Q  L  C  *  S  S  K  C  C  S  C  *  L  V  T  P  W  A  E  C  D  *  A  L  P  R  A  R  T  E  N  F  H  I  P  *  *  T  I  I  R  S  S  S  R  C  S  Q  S  A  L  G  T  *  F  I  E  E  E  Y  L  K  *  F  K  M  E  R  C  L  R  K  R  W  S  F  V  K  S  I  E   : E  P  S  *  D  G  E  S  Q  E  G  V  S  L  Q  F  F  T  S  T  K  D  G  E  H  F  *  C  Y  *  *  E  G  M  *  C  V  F  F  *  S  T  P  V  R  S  R  L  S  Q  L  F  A  R  Q  I  C  M  L  E  P  C  K  T  T  V  Y  L  F  L  G  C  Q  I  F  P  L  P  L  *  H  Q  *  I  K  C  T  S  *  C  F  R  R  E  I  E  C  N  L  S  M  G  K  T  R  S  W  I  S  F  E  F  L  C  K  *  R  A  A  S  C  R  D  C  W  *  I  I  S  *  T  *  G  I  S  A  K  R  G  K  C  R  T  L  Y  S  F  R  E  K  G  K  R  *  W  N  F  S  T  L  D  E  G  Q  Q  Q  C  F  F  T  A  *  R  *  T  I  Q  G  A  I  S  F  R  I  N  Q  G  V  L  Y  A  *  Q  C  F  S  W  N  *  G  G  T  E  W  L  P  G  Q  K  *  I  L  K  G  G  S  C  L  *  N  S  S  Y  S  A  V  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110367" stop="110543"/>
                    <exon start="111190" stop="111351"/>
                    <exon start="111725" stop="112093"/>
                    <exon start="112410" stop="113087"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1386</number_coding_nucleotides>
                  <number_encoded_amino_acids>462</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPKHDHQVGSSDTKYLNSGWNLNNFPRLTGSVLTYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHFGAPKMWYGVPGADASKLEAAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCVQNPGEFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLPHGQNAIEHYREQGRKTSISHDKLLLGAARDAVKAHWELNLLRKNTSNNLRWKDVCGKDGVLSKALKNRVEMERVRREFLCNSSQALKMESTFDATNERECSVCFFDLHLSAAGCHNCSPDKYACLNHAKQLCTCSWGAKFFLFRYDINELNVLVDALEGKLSAIYRWARQDLGLALSSYVNKERQVAGIAGKLSLKPEESVLKEASAGPSIASVKKEKDDGTSALLMKASSSAFSPHKDKLSREPLASESIKASSMPDNASHGIEGAQNGFQGRSESLKVGPVYRTPVTQLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 16 chains have been computed
$ 
$ memory statistics:
$ 8624 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2156 bytes was the average size of a spliced alignment
$ 8040 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2680 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 17 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-22 15:52:55
-->
