<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 04:11:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0044D11-8K5R2/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-jzeVE3/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-jzeVE3/sgn_marker_seqs" ref_id="SGN-M7609" ref_strand="+" ref_description="SGN-M7609 C2_At3g04260 [cosii_markers]">
      <seq>agaggttgatgaagagcttgatgagttgatctcacgtataaagttgcatgaaggaaatacagaattctggaaacgccgctttcttggggagggattaagtgaaaattatggccaacagtcggaaataatagacttagaacctactgatgtggtagatgataatgatgctgttgatgatatcaccaaagatgctgaagatgatgaggcagaagatgacgaggcacaagatgaggaggaagaagtggagcaaactgaaagccaaccagaaataagtgacaggaaggacaaggaagttgaagctgcaaaacctcttcaaatgattggagtgcaactgctaaaagattctgatctaacggctagctcttcaaaaaaatccaggcgaaggctttctagagtagctgcagtggatgatgacgatgatgattggtttccactagacattcatgaagcatttgtggagctgaggaaaaggaaagtatttgatgtatcagatatgtatacaatcactgatgcttggggctggacatgggaaaaagaaatcaagaacaaagctcctcgaagatggtcacaggagtgggaagttgaattggcgatcaaagtgatgacaaaagtaatagaattgggtgggacanccaacattggtgattgtgctatgatattgcgttctgcagtacgagctcctatgccttctgcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0044D11-8K5R2/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0044D11.1" temp_strand="+" temp_description="C04HBa0044D11.1  CU570871.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0044D11 sequenced_by:sanger upload_account_name:uk">
        <position start="50624" stop="57115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50823" g_stop="50826" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50827" i_stop="50925" i_length="99">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50926" g_stop="51327" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="406" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51328" i_stop="52421" i_length="1094">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52422" g_stop="52625" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="610" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52626" i_stop="56727" i_length="4102">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56728" g_stop="56815" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="698" r_length="88" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0044D11.1" gen_strand="+" ref_id="SGN-M7609" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0044D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50823" e_stop="50826"/>
          <exon e_start="50926" e_stop="51327"/>
          <exon e_start="52422" e_stop="52625"/>
          <exon e_start="56728" e_stop="56815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTAAATGTTATTCCCAGTGTATTAAGTGTAACTAGTTGTCTTGAGATATCATGCAAATCCATGTCATTCCTCACAAACTTTATTGTGTTATTTTTTCAGGTTGATGAAGAGCTTGATGAGTTGATCTCACGTATAAAGTTGCATGAAGGAAATACAGAATTCTGGAAACGCCGCTTTCTTGGGGAGGGATTAAGTGAAAATTATGGCCAACAGTCGGAAATAATAGACTTAGAACCTACTGATGTGGTAGATGATAATGATGCTGTTGATGATATCACCAAAGATGCTGAAGATGATGAGGCAGAAGATGACGAGGCACAAGATGAGGAGGAAGAAGTGGAGCAAACTGAAAGCCAACCAGAAATAAGTGACAGGAAGGACAAGGAAGTTGAAGCTGCAAAACCTCTTCAAATGATTGGAGTGCAACTGCTAAAAGATTCTGATCTAACGGCTAGCTCTTCAAAAAAATCCAGGCGAAGGCTTTCTAGAGTAGCTGCAGTGGTATGACATTTTATGGTGTTCATCGATTGCTAATTATTTGTTATAGCATCTACGTAGAAAGAAAAGTCAGAAGATACAAGCAAGTCATATGTTTGATATCTGCTCTCTCTGTCTCATATGGACCCAAATGGAATATCCACTACATTCCTGTATCTTCCCGTGATATTTTAGTAAATCATTTGGAACAAGATGGGCCTTAATTGGGCAAGACCGTATTCGAAAGATCTATTAAGCCAACCATAAATAGTTTAGGATTGAGGCATTGTTGGTTGATTGATTTAGTTGATGTCTGCTCTCTCGATCCCAGTGGACTCTTTTTCCAATTTCCATCTGAATATCCACATCTCGTCTGGTTCTTCTCATGAAAATTTTTAGTTGTGGACAAGGAAAGTCAAAATCGTCATCGAATTTTTGATGAGCCACATGTCACTCTGAATTCACAATCTTTTCCTTTTTCACCCCAACAGCCAAAATGTAATTTTTGGTGCCTTCTTGTTTCTCATAAATATTGCAGCGATGTGCTTCATCAATAATTTGTTTAATAGTTATGATTCAAAGTAGAAAAACAATTTGGTGAGTAGGGAGAATCATTTTTTTTTTTGAAATAGGTAACTAGTGAGTAGGGAGAATCGTGTGATTACAATTTCCATAGCTGTTGAGGGATTGACATTTATATCATATTTTCCTCTTCCCTCTCCAAGTTCCGACTTTACCTTTACTATATCTACTTTTGTATATTTTAGCTTCATAGTTCGTTCTTAAAATACATCTCTCTGATTCACCATTTTATGAATCTTATAACATTCTGTCTAATCTAGACCACAGAGACGGTGTGCTTTAGGTGACTAAAACTTGTGTGTTTGAATCTGTTGCCTTAGAACATCTTTATTTGTTTCATGGGCAAATGTTTAGCATACAATCAAAAATGGAAATAGTCATCCAGGTAATAACCCTATGTTTCCCTACAAATTACCCTAAAACTTACAAATTTTCGCATAATGACTCATTTACTTCTGGAAACTGCATAAGATTCACAAAAATTGCTGTTTACAAGCATGGGTATTTGATTGATATGTCTTCTCTTATTTGCACAGGATGATGACGATGATGATTGGTTTCCACTAGACATTCATGAAGCATTTGTGGAGCTGAGGAAAAGGAAAGTATTTGATGTATCAGATATGTATACAATCACTGATGCTTGGGGCTGGACATGGGAAAAAGAAATCAAGAACAAAGCTCCTCGAAGATGGTCACAGGAGTGGGAAGTTGAATTGGCGATCAAAGTGATGACAAAAGTATGTTATGATATCCTTTTTAATCTCCTCACCATTTTCAACACAATGTTACATGCAGTCTTTCCTCAATCTACAAGTAACCTCTTGCTAAATAGCATGCGTATAGGTTGAATTTCTATGTAAGTATATGCCGTGACAGATTTTTGAGAGTCCGTGAAACAATGTTGCTGAGAATATCATTAACTAATAAAAGTTGAGTTCCCTCTCAAACTCTTTTATTTTAACATGGTATCCGAGCAGGCAAAGGTCCTGAGATCGAATCTCACTACTACCCAAATTAAAAAGAAATTCCACATGCTTGGCCCATGAAAAGAATTAGACCCGCACGTGAGGGTGCGTGTTGAGTATATCATTAACTAATAAAAATTGAGTTCTCTCTCAAACCCCTGTCATCTCACAAATGTATATTGTTAGACAAGTATAGCTAAACTATCCCTGTTTCCTTACAGACTTAGTAATTAATATCTCTTTGCTCGGTGATTATTCATAGCTCTATGCTAAGATATTGTATTTTGTGTTGAAAAAAAAATGAATTGGTGATATTGCATTTTTTTTGGGGGGGGGGGGGGGACGACCAACATGTGGGATATGACAGCTAGTTGCATAAGGGAAGCTGCAAAAGAGGTGTTGGGGGATTTCTAGAGGAAACTCTAGTGGACAGGAGATTAGTGGGGGAATGGTGAAGTCTAATGGAAAGTGGAAGCAAATAAGGCTGTTTATGCGAAGTTGGTGGAGAGTAAGAACGAGTATGATAAGCGTACTAAGAGGGAAATGTATAAAGTATCAAGGGAGGAGGCAGAGTTGTCGGTTACACCGGCAAAATGAAAGTTTTCTAATGCTTGCATGCGGAGTTATGAGACAAAGGCCGAGATAAGAAGCTGAACAGGCTAGCCAAGGCAAGCGAAGAAGGCCTAAGACCTCAACCAAGTGAAGTGCATCAAAAACAAAGTTTTGGTGGAGTAGACACTCATTAGATGGAGGGGACAAACATTCTTTCTCAAGCTCTTGAATGATGGGAGGGACATGGACATTATACTGGAGAGTTGGAGCTCTCTGAGAGAAAACAAGATTTCGAGTATTGTAGGTCTATAAAGGTTGATGAGATCAAGTGCTATTCGTAGGATGAGCTGGGAAAGAGCGACCAGGCCAGATGAAATTTCGGTGGAGTTCTGCAAGAATATAGGAGGGTAGGCTTGGAGGGTCGTCTAACTGGATAATATATAGAATTGCAGCAACTATAGTGGTGTTGAGCTGCTAATCCATACAGTGAAAATGTTTGGTGGTGGAGATAAGGGTAAAGAGGGTTGTGTCTAATTCTGAGAATCAATTTGAATTCATGTCGGGGCGAACTACCACAGAAGCCATCTATCTTATGAGGAGGCTAATGGAACAAGATAGGGAGTGGAAGATGGATTTACATATGGTGTTCCTCGTCCTAGAAAAGGTTTATGACAAAGTCCCCAGGGTGGTCCCATGGATATGCTTGGAGGCTATAGGTGTAGTTGTGGCTTATACCAGGGCGATTGAGGACATGTACGATGGATCCAAGACTAGGGTGAGGACAATAGTAAGAGACTAAAAGCACTTTCCAGTCATGATGGGGTTACACCAGAGGTCGACTCTTAGTCCATTTTGTTTTGCACTGGTTATGGGTGAATTGCTGTGGTATATCCAAGGTGAGATGCCATGGTGTATGTTGTTTGCAGATAACATAGTATGGATTGATGAGACTTGTGGAGAAGTTGACTCTAGGCTGGAGGTTCAGAGACAAATCGCGGACTCTAAAGGATTCAAGTTGACCAAGAACAAGACTGATATTTAGGGTTCGTTTGGTAGAGTGTATTAGGAAAAATAATGCATGCATTAGCCTTGTGTGTTAATATTACTAGCATCTTGTTTGGTACTCTTTTCAACCTATGTATAACTAATGCTTGCATCAGTTAAACACTCTGTTGTGTATTAGTGTGTGTATTTGCCATGGATTTCTAGGTATTAGCAATGCAATGGTTTTATGCATTAGCAAGATTAAAGACCCAATTGCCCTCGATACCTTTTTACATCTTTTCTACCATAATAGTGGAGGGTATCTGAGGGTATCTTTGTAAATTATTTTTTTATGCAATGCATGCTATTTTTGTATGCATCAAACTAAATAATGCATAAAAATAATCTATGTATAACTAATGCAAGCATAACTAACACATGCATTGCTAATGCAAGCATTAGTAATACACTCTATTTAGCATTATTCTTATACACTCTACCAAACGACCCCTTCATTGATGCTATGCATTAGGTTGGCGCAAAAGTTAGGCTTGATGCTTAGGTCATCCCTATAAGAGGATGTTTCAAGTATTTGGGGTCAATTCAAGGTAATGGTGAGATGAATTATAATGTCACATATCGTATTAGTGTTGGATGGGCAAAATGGAGGCTTGCTTCTAGAGTCTTGTGTGATAAGAAGATACTTTCAAAACTAAAGGTAAGTTCTACAGAGTGGTAGTTAGACCAACTATGTTGTATCGGGCAGAGTGTTGGCCAGTCAAGAACTCTCACATTCAGAAGGTGAAAGTTATGGTGATGAGGATGTTGAGATGGGTGTATCAGCATAGTAAGAGAGATAAAATTATGAATTGAGATATCCAAGACAAGTAGGAGTGTCTTCCATGGTGGAGAAGATGAGGGAATTGAGGTTAAGATGATTTTGGCATATGAAGAGGAGAAGTGTAGTTGCCCCAGTGAGGTGTGAGAGGTTAGCAATGGCGGGCGATAGGTTAGGTAGATGCAAATCGAAGAAGAATTGGGGAAAGGTGATTAGACAAGACATTTGAGCTGACCGAGGAGCAACCTTAGATAGGAAGGTTTGGAGGTTGCGGAATAGGGTAGAAGGTTAGTTGACAGTTGAGCGTTCTCTGGCTTCCTGCAGAATACGCATGGTGGTCGTACTTGTACCTACTTTCTTACCAATAAATTAATACTATTCTCGTAGTTTCTTGTTCTTAGATTTTGGTTATCACATGTGTTCTTTTGTGCTTCGGTTATCACATTATTTTGTTGTGGTTACTGCTCTTCCTTTTTTATGTTGTGTACTACTCTCCATTTTGTATTATTTTGTTGTTGTTACTGCTTCCATTTCCGTATTCCCTTTTTCAATCTGCTTTGAATGCTTTATTTAAGCTGAGGGTCTATCGTAAGCAACCTCTTTATTGTTATGAGGTAGGGGTAAGATTTGCATATACTCTACCCTCCCATACCCTACTTATGAGATTACACTGCATATGTTGTTATTGCATTTTGTGCTTTTACCGTCTACCTATATCTTTTATTTAATACACAGAAAGATAGTAGTTTAGAACACTCAACATATTCACATGAATGATGCCTACATTTAACACTTGCTCTTCCAGATTTTTCATTTTACCAATTCATGCTTCTTCCTAGAAACTTTCATTGTGGCAGTTATGGATCAGAATTTGGTATGACTGGTGGCCAACTTCCTGATGACTGTCTCTCATCTTTGGTTTGAGAAGGAGAATTAAATGAACCCAACATTGAAGATTTGGTTCAATAAAGTTTCATTTTTTCCAAGATTTTCCTACATAATCCAACGTTAGTCTATTATGGTCTTATGAAAAAATCGTTAGCTGCAAAGGATACTCAAAACTCACCTTCATTTTCTTTGCTTCCTGTATCATTATTATCAGCTGTTGCTGCATATACTGAAGTCACTAGTGACTCCAAGCCACGGTAAAACCATACCGGATCTAATGTTCTTACAACTTTCTTGGTTCTTCTTTATTTAGTTTTCTTTGTAGCATTCTCCTGTAACGCTTTATAGGAGTTACAGTCTTGCTTTTCTAGATCTCTTTAAATATTAAGTCTTTCTGGATTTTGGAAGTGATATATCAATAAATTTTCAGTGAACGAAGCCTAGAGTTTTACAACTTTGTTTTCTAATATTGTTGTTCTATTCTGATAGTGAATTATGACATTCTAGCAGAACTGGTTCTATGCTATTTCCTGTCCTTGTAATTAGTGAACTTGGCTTCATGTATGGATTCTTCTGTTTTGCAGTTGTAAACGAAAAATGTTTCTGTCTCAGGTAATAGAATTGGGTGGGACACCAACAATTGGTGATTGTGCTATGATATTGCGTTCTGCAGTACGAGCTCCTATGCCTTCTGCTTTTT</genome_strand>
        <mrna_strand>AGAG...................................................................................................GTTGATGAAGAGCTTGATGAGTTGATCTCACGTATAAAGTTGCATGAAGGAAATACAGAATTCTGGAAACGCCGCTTTCTTGGGGAGGGATTAAGTGAAAATTATGGCCAACAGTCGGAAATAATAGACTTAGAACCTACTGATGTGGTAGATGATAATGATGCTGTTGATGATATCACCAAAGATGCTGAAGATGATGAGGCAGAAGATGACGAGGCACAAGATGAGGAGGAAGAAGTGGAGCAAACTGAAAGCCAACCAGAAATAAGTGACAGGAAGGACAAGGAAGTTGAAGCTGCAAAACCTCTTCAAATGATTGGAGTGCAACTGCTAAAAGATTCTGATCTAACGGCTAGCTCTTCAAAAAAATCCAGGCGAAGGCTTTCTAGAGTAGCTGCAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACGATGATGATTGGTTTCCACTAGACATTCATGAAGCATTTGTGGAGCTGAGGAAAAGGAAAGTATTTGATGTATCAGATATGTATACAATCACTGATGCTTGGGGCTGGACATGGGAAAAAGAAATCAAGAACAAAGCTCCTCGAAGATGGTCACAGGAGTGGGAAGTTGAATTGGCGATCAAAGTGATGACAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAGAATTGGGTGGGACANCCAACATTGGTGATTGTGCTATGATATTGCGTTCTGCAGTACGAGCTCCTATGCCTTCTGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="50823" PGL_stop="56815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50823" e_stop="50826"/>
            <exon e_start="50926" e_stop="51327"/>
            <exon e_start="52422" e_stop="52625"/>
            <exon e_start="56728" e_stop="56815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50823" e_stop="50826" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="50827" i_stop="50925" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50926" e_stop="51327" e_length="402"/>
          </exon>
          <intron i_serial="2" don_prob="0.932" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51328" i_stop="52421" i_length="1094"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52422" e_stop="52625" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52626" i_stop="56727" i_length="4102"/>
          </intron>
          <exon e_serial="4" e_score="0.955">
            <gDNA_exon_boundary e_start="56728" e_stop="56815" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50823" stop="50826"/>
              <exon start="50926" stop="51327"/>
              <exon start="52422" stop="52625"/>
              <exon start="56728" stop="56815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7609" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAG : GTTGATGAAGAGCTTGATGAGTTGATCTCACGTATAAAGTTGCATGAAGGAAATACAGAATTCTGGAAACGCCGCTTTCTTGGGGAGGGATTAAGTGAAAATTATGGCCAACAGTCGGAAATAATAGACTTAGAACCTACTGATGTGGTAGATGATAATGATGCTGTTGATGATATCACCAAAGATGCTGAAGATGATGAGGCAGAAGATGACGAGGCACAAGATGAGGAGGAAGAAGTGGAGCAAACTGAAAGCCAACCAGAAATAAGTGACAGGAAGGACAAGGAAGTTGAAGCTGCAAAACCTCTTCAAATGATTGGAGTGCAACTGCTAAAAGATTCTGATCTAACGGCTAGCTCTTCAAAAAAATCCAGGCGAAGGCTTTCTAGAGTAGCTGCAGTG : GATGATGACGATGATGATTGGTTTCCACTAGACATTCATGAAGCATTTGTGGAGCTGAGGAAAAGGAAAGTATTTGATGTATCAGATATGTATACAATCACTGATGCTTGGGGCTGGACATGGGAAAAAGAAATCAAGAACAAAGCTCCTCGAAGATGGTCACAGGAGTGGGAAGTTGAATTGGCGATCAAAGTGATGACAAAA : GTAATAGAATTGGGTGGGACACCAACAATTGGTGATTGTGCTATGATATTGCGTTCTGCAGTACGAGCTCCTATGCCTTCTGCTTTTT</gDNA_template>
            <first_frame> R   : G  *  *  R  A  *  *  V  D  L  T  Y  K  V  A  *  R  K  Y  R  I  L  E  T  P  L  S  W  G  G  I  K  *  K  L  W  P  T  V  G  N  N  R  L  R  T  Y  *  C  G  R  *  *  *  C  C  *  *  Y  H  Q  R  C  *  R  *  *  G  R  R  *  R  G  T  R  *  G  G  R  S  G  A  N  *  K  P  T  R  N  K  *  Q  E  G  Q  G  S  *  S  C  K  T  S  S  N  D  W  S  A  T  A  K  R  F  *  S  N  G  *  L  F  K  K  I  Q  A  K  A  F  *  S  S  C  S   : G  *  *  R  *  *  L  V  S  T  R  H  S  *  S  I  C  G  A  E  E  K  E  S  I  *  C  I  R  Y  V  Y  N  H  *  C  L  G  L  D  M  G  K  R  N  Q  E  Q  S  S  S  K  M  V  T  G  V  G  S  *  I  G  D  Q  S  D  D  K   : S  N  R  I  G  W  D  T  N  N  W  *  L  C  Y  D  I  A  F  C  S  T  S  S  Y  A  F  C  F   </first_frame>
            <second_frame>  E  :  V  D  E  E  L  D  E  L  I  S  R  I  K  L  H  E  G  N  T  E  F  W  K  R  R  F  L  G  E  G  L  S  E  N  Y  G  Q  Q  S  E  I  I  D  L  E  P  T  D  V  V  D  D  N  D  A  V  D  D  I  T  K  D  A  E  D  D  E  A  E  D  D  E  A  Q  D  E  E  E  E  V  E  Q  T  E  S  Q  P  E  I  S  D  R  K  D  K  E  V  E  A  A  K  P  L  Q  M  I  G  V  Q  L  L  K  D  S  D  L  T  A  S  S  S  K  K  S  R  R  R  L  S  R  V  A  A  V  :  D  D  D  D  D  D  W  F  P  L  D  I  H  E  A  F  V  E  L  R  K  R  K  V  F  D  V  S  D  M  Y  T  I  T  D  A  W  G  W  T  W  E  K  E  I  K  N  K  A  P  R  R  W  S  Q  E  W  E  V  E  L  A  I  K  V  M  T  K  :  V  I  E  L  G  G  T  P  T  I  G  D  C  A  M  I  L  R  S  A  V  R  A  P  M  P  S  A  F  </second_frame>
            <third_frame>   R :   L  M  K  S  L  M  S  *  S  H  V  *  S  C  M  K  E  I  Q  N  S  G  N  A  A  F  L  G  R  D  *  V  K  I  M  A  N  S  R  K  *  *  T  *  N  L  L  M  W  *  M  I  M  M  L  L  M  I  S  P  K  M  L  K  M  M  R  Q  K  M  T  R  H  K  M  R  R  K  K  W  S  K  L  K  A  N  Q  K  *  V  T  G  R  T  R  K  L  K  L  Q  N  L  F  K  *  L  E  C  N  C  *  K  I  L  I  *  R  L  A  L  Q  K  N  P  G  E  G  F  L  E  *  L  Q  W :   M  M  T  M  M  I  G  F  H  *  T  F  M  K  H  L  W  S  *  G  K  G  K  Y  L  M  Y  Q  I  C  I  Q  S  L  M  L  G  A  G  H  G  K  K  K  S  R  T  K  L  L  E  D  G  H  R  S  G  K  L  N  W  R  S  K  *  *  Q  K :   *  *  N  W  V  G  H  Q  Q  L  V  I  V  L  *  Y  C  V  L  Q  Y  E  L  L  C  L  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0044D11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50824" stop="50826"/>
                    <exon start="50926" stop="51327"/>
                    <exon start="52422" stop="52625"/>
                    <exon start="56728" stop="56814"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVDEELDELISRIKLHEGNTEFWKRRFLGEGLSENYGQQSEIIDLEPTDVVDDNDAVDDITKDAEDDEAEDDEAQDEEEEVEQTESQPEISDRKDKEVEAAKPLQMIGVQLLKDSDLTASSSKKSRRRLSRVAAVDDDDDDWFPLDIHEAFVELRKRKVFDVSDMYTITDAWGWTWEKEIKNKAPRRWSQEWEVELAIKVMTKVIELGGTPTIGDCAMILRSAVRAPMPSAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 5 chains have been computed
$ 
$ memory statistics:
$ 2280 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 5624 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5624 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 6 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 04:11:12
-->
