<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-06 21:34:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321823" ref_strand="+" ref_description="SGN-U321823        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:19296550-19298530 REVERSE | Aliases: F4F15.90(evalue: 8e-64, score=241) genbank/nr: gi|15231095|ref|NP_190766.1| expressed protein [Arabidopsis thaliana] gi|11357782|pir||T49077 hypothetical protein F4F15.90 - Arabidopsis thaliana gi|4678927|emb|CAB41318.1| hypothetical protein [Arabidopsis thaliana] gi|20268764|gb|AAM14085.1| unknown protein [Arabidopsis thaliana] gi|21689669|gb|AAM67456.1| unknown protein [Arabidopsis thaliana](evalue: 6e-62, score=241)">
      <seq>atgatttaaataattcatccctacctctggagcatcatctccgtgccttagaggagctgttggtacttgttgagcatattgataatgcaattgatctgcagaaacttggaggcttcagcatacttgtaagaatacttaatcattctgaaccagaaataaggattgctgcggcatgggttcttggcaaagccagtcaaaacaaccccattgttcagaagcaggtcctggaacttggggcattgacagtgctaatgaagatgatgaaatctcacaccacggaagaagctgtaaaagcattatttgctatttcagcactaataagaaataacatgaatggccgaagtttgttttatcaggaagctggagatacgatgcttcaggaggttcttagcaattcaaatctggatatcaggttgcataagaagtcactgtttcttattgctgatttagccgagagtcagctggaaaatgagaacacagctgaggtttccttttttagcaatcgattgttactgaaggccatcgttgattcaatggcatcaagcgatcttgatctaacagaaaaggccctttacgcaactaaaaacttactactacttagatcgactgatgttcaactcttcaaggacttctgtaaattgaacgaggtacttgagaggacgaggcaacagttgaatgatcttagtgaagaatacgcaatggatgtggagagtcttcgaaaagaagttaacctgaccttccttcaaaagctgaatgaggttacacaatctgcattatgatgacagtctctggcttgatctgggttttgaacgttatactgcttgcattctacgcgcggaagtaaccaagtggatcgcgatatcttcatcatcccacgcctttgttcatctggacgtggactcgaaattggtacatcatcatctgcttaggacaacactaatgtgaaatagacaacattatgagctaacgacgactcgcgctgattttataagtgcctctactatttaagttatagccaattttgtcgaatatttaacttttatcaatcttgcaaaattgatagcaatgtaatgtatgtgatgagaaaatcaattttgtggaaagaccaatattttctgcttctacagaatttgtatcaacctttaagaaaatattcaattttctacgaatttattatgtatctatttcacataaaaaataaaaaaaaaaagggaaattgcgcgtattagtagaaatataatagtcaatttagtgaacataactatagtttgttattattataatttgctgacctatttttagatacaattatgcggattatttttttagtttttgtataattagcatgtttgtagaatttagagtttgtataatatattttgtataatttttatacaatgcaattttatataatatgtacaactgtttaccctttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="646" stop="4106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="946" g_stop="1038" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1039" i_stop="1572" i_length="534">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1573" g_stop="1700" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="221" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1701" i_stop="1838" i_length="138">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1839" g_stop="1997" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="380" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1998" i_stop="2076" i_length="79">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2077" g_stop="2262" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="566" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2263" i_stop="2859" i_length="597">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2860" g_stop="3051" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="758" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3052" i_stop="3127" i_length="76">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3128" g_stop="3803" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="1435" r_length="677" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1436" polyA_stop="1458"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-U321823" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1434</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="946" e_stop="1038"/>
          <exon e_start="1573" e_stop="1700"/>
          <exon e_start="1839" e_stop="1997"/>
          <exon e_start="2077" e_stop="2262"/>
          <exon e_start="2860" e_stop="3051"/>
          <exon e_start="3128" e_stop="3803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTTAAATAATTCATCCCTACCTCTGGAGCATCATCTCCGTGCCTTAGAGGAGCTGTTGGTACTTGTTGAGCATATTGATAATGCAATTGGTATGTATAGTTCTCAGTACTTCTTTTATTACAGTCTTACAGATGTTTGTTTTTGCCTCTTTTGGTTTTGGTTTTATAACTTCTGACATAATATCAACATCAACAACACACCCGGTATAGCCCCACAAGTGGGGTCTGGGGAGGGTGAGGTGTACGCAGACCTTACCCTTAACTTTGTGAGGTAGAGAGACATGACACCTGACCTCATATCAACTGTAGTAATTCATTAGCATCTATATATTCCCAATAGACACGCTTCCAAGACCTAATAAGGCTATAATCAAGTCTTTAGGAGGCTCGAACTAGAAGAGCATACAACTGGCCTCTTAGGAACTATAGCACCCTTTCTTGATCTTGGTTTTTGAAGCTTCTCAATGATGCTTATGTGTACTTGTTAATGTCTTGACTCTTGAGGATTCATCAATAGTTTTTCTTTATACAGGCATCAACCGATTTCTCACCATTCCTTCATTTAAAGAAAGCATTGAATGCACATATATACTTTCTCAATGCTTACATGGTTTTTATTTTCAGATCTGCAGAAACTTGGAGGCTTCAGCATACTTGTAAGAATACTTAATCATTCTGAACCAGAAATAAGGATTGCTGCGGCATGGGTTCTTGGCAAAGCCAGTCAAAACAACCCCATTGTTCAGAAGCAGGTATTGGAGCTATGTTTTTATACAAGTTTGGTCTTTAATGATTTAGTTTCTTTGTCGCTTTCATGTGTGCAGTTCTGTGTTTATATTCTAAATTTACTGGCTATTGTATTGACGCTGTGCAATGACTTTTGCATTCAGGTCCTGGAACTTGGGGCATTGACAGTGCTAATGAAGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAGGTGATCCCACTGAAGATTGAGTCTAGTTAGAACTCGTCTACTGCTGCAGTGTATAACTTCCTTCTGTCGTTGTACGCAGGAGGTTCTTAGCAATTCAAATCTGGATATCAGGTTGCATAAGAAGTCACTGTTTCTTATTGCTGATTTAGCCGAGAGTCAGCTGGAAAATGAGAACACAGCTGAGGTTTCCTTTTTTAGCAATCGATTGTTACTGAAGGCCATCGTTGATTCAATGGCATCAAGCGATCTTGATCTAACAGAAAAGGTTTGTGTAGTCTTTAGTGTGAATGAACATTAATTTCTAAAGTATCTTAGTAGTCTAAATTTCATTTGCACGATCCCTTAGGTTTTCAAATATTAGAAATGATTCTCATCCTCAGCAATTTTGGCCTGACCTTTGTGAAGAGCAAGTGTCGATGGTCTTTTTACGTAAAATCCACAGTTGCATCCGTCATGAGTACACCCGTATACCTCCAAAGTTTAAAGTGTCGCTCTGTTGGATTATCCTTTTTCTTGACTAAATCGCCTACTTTCATTTTTTGTAAGTGGCTATATCAGTCGGTTGTACTGCATTTTAATGGTGGAGTGTTGGTTAGATGGGAGAAGTAATTGGTAGAGCGATGTCTGATTAAAAAATTGATTGACTTGGTTTGGCAAGTCTTTCGAACAACATATAGATTTACGACTTTATAAGGTATATGGGCTCATAAACTTGTTTTATTTGGACTATCCCGCGTATCTTTCATTACATTTCCGTCTTCAATACATTGAACACAGCCTCTGTAATACAAAATATTGCCTTGCATATGTTGGTGACATCTTTAAAAAGTCTGTTATAGGCTTGACATTGCTTTAACTGCAGGCCCTTTACGCAACTAAAAACTTACTACTACTTAGATCGACTGATGTTCAACTCTTCAAGGACTTCTGTAAATTGAACGAGGTACTTGAGAGGACGAGGCAACAGTTGAATGATCTTAGTGAAGAATACGCAATGGATGTGGAGAGTCTTCGAAAAGAAGTTAACCTGACCTTCCTTCAAAAGCTGAATGAGGTAACAGAACCATTAACGTAGATTTCTTTTCATTTGAACTTGAACTTGGATCCTTTGCTAAAACTCGAAATGACAGGTTACACAATCTGCATTATGATGACAGTCTCTGGCTTGATCTGGGTTTTGAACGTTATACTGCTTGCATTCTACGCGCGGAAGTAACCAAGTGGATCGCGATATCTTCATCATCCCACGCCTTTGTTCATCTGGACGTGGACTCGAAATTGGTACATCATCATCTGCTTAGGACAACACTAATGTGAAATAGACAACATTATGAGCTAACGACGACTCGCGCTGATTTTATAAGTGCCTCTACTATTTAAGTTATAGCCAATTTTGTCGAATATTTAACTTTTATCAATCTTGCAAAATTGATAGCAATGTAATGTATGTGATGAGAAAATCAATTTTGTGGAAAGACCAATATTTTCTGCTTCTACAGAATTTGTATCAACCTTTAAGAGAATATTCAATTTTCTACGAATTTATTATGTATCTATTTCACATAAAAAATAAAAAAAAAAAGGGAAATTGCGCGTATTAGTAGAAATATAATAGTCAATTTAGTGAACATAACTATAGTTTGTTATTATTATAATTTGCTGACCTATTTTTAGATACAATTATGCGGATTA-TTTTTTAGTTTTTGTATAATTAGCATGTTTGTAGAATTTAGAGTTTGTATAATATATTTTGTATAATTTTTATACAATGCAATTTTATATAATATGTACAACTGTTTACACTTT</genome_strand>
        <mrna_strand>ATGATTTAAATAATTCATCCCTACCTCTGGAGCATCATCTCCGTGCCTTAGAGGAGCTGTTGGTACTTGTTGAGCATATTGATAATGCAATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCAGAAACTTGGAGGCTTCAGCATACTTGTAAGAATACTTAATCATTCTGAACCAGAAATAAGGATTGCTGCGGCATGGGTTCTTGGCAAAGCCAGTCAAAACAACCCCATTGTTCAGAAGCAG..........................................................................................................................................GTCCTGGAACTTGGGGCATTGACAGTGCTAATGAAGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAG...............................................................................GAGGTTCTTAGCAATTCAAATCTGGATATCAGGTTGCATAAGAAGTCACTGTTTCTTATTGCTGATTTAGCCGAGAGTCAGCTGGAAAATGAGAACACAGCTGAGGTTTCCTTTTTTAGCAATCGATTGTTACTGAAGGCCATCGTTGATTCAATGGCATCAAGCGATCTTGATCTAACAGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTTACGCAACTAAAAACTTACTACTACTTAGATCGACTGATGTTCAACTCTTCAAGGACTTCTGTAAATTGAACGAGGTACTTGAGAGGACGAGGCAACAGTTGAATGATCTTAGTGAAGAATACGCAATGGATGTGGAGAGTCTTCGAAAAGAAGTTAACCTGACCTTCCTTCAAAAGCTGAATGAG............................................................................GTTACACAATCTGCATTATGATGACAGTCTCTGGCTTGATCTGGGTTTTGAACGTTATACTGCTTGCATTCTACGCGCGGAAGTAACCAAGTGGATCGCGATATCTTCATCATCCCACGCCTTTGTTCATCTGGACGTGGACTCGAAATTGGTACATCATCATCTGCTTAGGACAACACTAATGTGAAATAGACAACATTATGAGCTAACGACGACTCGCGCTGATTTTATAAGTGCCTCTACTATTTAAGTTATAGCCAATTTTGTCGAATATTTAACTTTTATCAATCTTGCAAAATTGATAGCAATGTAATGTATGTGATGAGAAAATCAATTTTGTGGAAAGACCAATATTTTCTGCTTCTACAGAATTTGTATCAACCTTTAAGAAAATATTCAATTTTCTACGAATTTATTATGTATCTATTTCACATAAAAAATAAAAAAAAAAAGGGAAATTGCGCGTATTAGTAGAAATATAATAGTCAATTTAGTGAACATAACTATAGTTTGTTATTATTATAATTTGCTGACCTATTTTTAGATACAATTATGCGGATTATTTTTTTAGTTTTTGTATAATTAGCATGTTTGTAGAATTTAGAGTTTGTATAATATATTTTGTATAATTTTTATACAATGCAATTTTATATAATATGTACAACTGTTTACCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340368" ref_strand="+" ref_description="SGN-U340368        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G45490.1 | Symbol: None | Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division.  Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems.  In interphase cells, the protein is predominantly nuclear.  During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. The protein is concentrated in nuclear dots arranged around the nucleolus and the nuclear periphery in early prophase cells. | chr2:18754713-18756149 REVERSE | Aliases: F17K2.2, ATAURORA3 (evalue: 1e-92, score=328) genbank/nr: Protein(evalue: 2e-91, score=337)">
      <seq>aaggtgatattcaaggagcagatagagaaatacaggttgcatcatcagcttaagagggaaatggagattcaaacaagtcttcatcatcccaatgtgttgaggctatatggttggtttcatgatgaggagcggatttacttgattttggagtatgctcatcgcggtgagctgtatagggagctaaggaagataggtcgtctgtctgagaaacaagctgccatatatattgcaagtctcactcaagcactggcgtactgtcatgagaagcatgttattcacagggacataaagccggaaaacctgttacttgatcatgagggccgcttaaagattgcagactttgggtggtctgtacaatctagaagcaagagacatacaatgtgcggaactctggactatctggcaccagaaatggtggagaacaaagctcatgattattcagttgacaattggaccctggggatcctttgctatgaatttctatatggtgtgcctccatttgaggccgagagacagactgacacattcagaagaattatgaaggtagacctcagcttcccttcacacttgatgtatctgctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="4432" stop="7432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4732" g_stop="4953" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4954" i_stop="5590" i_length="637">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5591" g_stop="5686" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="318" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5687" i_stop="6790" i_length="1104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6791" g_stop="7005" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="533" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7006" i_stop="7080" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7081" g_stop="7132" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="584" r_length="51" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-U340368" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4732" e_stop="4953"/>
          <exon e_start="5591" e_stop="5686"/>
          <exon e_start="6791" e_stop="7005"/>
          <exon e_start="7081" e_stop="7132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTGATATTCAAGGAGCAGATAGAGAAATACAGGTTGCATCATCAGCTTAAGAGGGAAATGGAGATTCAAACAAGTCTTCATCATCCCAATGTGTTGAGGCTATATGGTTGGTTTCATGATGAGGAGCGGATTTACTTGATTTTGGAGTATGCTCATCGCGGTGAGCTGTATAGGGAGCTAAGGAAGATAGGTCGTCTGTCTGAGAAACAAGCTGCCATAGTATGTTACATCCTATTGCTTGCTCTCCTCATATAAGATATGAAACAAAAGCATTTAGTTCATTTGCAGTATTCGGATTTGTTTATGTAATTTGTTATGAGCATATATTCATTGATTCTAGTGTTAGAGAGCTCCATATTATTGAATGAAACGGGTACAAATGAAGCGAAATGGATTATGGGATTCTCATTGCTGTCTCAACTAGCTTGGGATTGAGGTGTAGTTTTGTTGTTTAGTTGTGAGCTTTTAAATTGTTTCAACTGATGGCCTCTTCCCCCGAACCCAAACAAAGAGGATAGAGATTCAGTTCTTTCGTTATCTATCACTATATGACATGTAAGGTATGGTCTACTTGAAAGATGGTGCAATTTTGGGTTGCATTTGTATCAGTTGGTGTTTTTTCATTTTCATAGTGTCTTGTTTATGTTATTTCTTCTGTGCTTAATGTTGAACAATGAACTAATGTTATCGTTACTATTGTCCTTCTTATGACTCCAGTGTTTATCTGAAAATTGTTTATGGAATAGTCGAACACATAATTACAATTATGTAGAAATCATCATTTAGTGTTCAACTTCTTTCCTGTTGCTTTATGTTTGTTCTTTGACTTTTGATACTTCGGTTGTTTCTTTTGTAGTATATTGCAAGTCTCACTCAAGCACTGGCGTACTGTCATGAGAAGCATGTTATTCACAGGGACATAAAGCCGGAAAACCTGTTACTTGATCATGAGGTAAGATCTTGATAACTTACTGTCTTTGTTTGCCACGTCTGCTAAGTTTTATTAGCACCATCTCCTAAAAAGAAGAAAACACACACTATATATATGGCTAATTTGTAAGGTTCATAACACTATGGATCAACTCGAAGGTTCCAGTTGCTTTGAAATTTAGCTTTCCTCTTTAGTCCCGACTCTCCTGAGGGTTGAACCTTGAGAGATCATTGACCTAACCAGATATTGGTAATATCCTTCATAAATATCTTTCCTGTGAAATTCAATCAGCTTCTGTTTTTCTTCACGGAAAAGGAAAAAGCAGTAGAGCTTGTTGGAGTGTTGACACTTCTAGTTGGTGCAAAGCTTTGACACCGTAGTTGCCTTGGCGACTTTAACTGCTGCTTGCTGATTGAATCAGCCTATTGAACAACCTTCAAGAAGCTCTTCTCTGATCAGTCTTATTTCTAGTATGTCATTGCCTATCTTTTGTTGTTGCATTTTCTGTTTAACTTATAAAGGCTGGAAATGCCGCTTTATAATCTTTCTATTGTTATATAGAATTTCTTTCGCTTTATAATCTTTCTATTGTTATATAGAATTTCTTTCGATTTCACCTCATGTCGCTGTATAACCAGGCTCAAGTAAAATAGCGACCCTCTGATTCTTTATTAATTTTGGCTAAAGTTGTGAATGTGGGACATTAAGTTTTACATATGATACGTCATTCTGACGATCACCAGAGCTTGCACTATCTATCTCATTTTGTTTCAACATAAATTAACCTGGTCAAGAAAAAAATGTCAACTGTAAAATTCACTACCTTCAAAGCTAGTATATTTAAAATAATTTGCATGTCTTTCAACCATTATTTCATAGGATAATGACAATTGAGATCAAGGGAGTATATCTGTTGATGTATCCTAATAAAACCATATATAACAGAGCAGTCAGGATGGTTCTATTAAGATAATGTATGTAATGTTAGCGCTTAGGTTTTTCATGGGCGTCCCAATTAGAGCTGGATTTGATTGTGCAGCAACTGCAGCTGAAACCAACCAGGGAATTGTTAACGTGCTGCATCGTAAGGGTAAAATATTAATTAGATTATCACATGAAATGCAGGGCCGCTTAAAGATTGCAGACTTTGGGTGGTCTGTACAATCTAGAAGCAAGAGACATACAATGTGCGGAACTCTGGACTATCTGGCACCAGAAATGGTGGAGAACAAAGCTCATGATTATTCAGTTGACAATTGGACCCTGGGGATCCTTTGCTATGAATTTCTATATGGTGTGCCTCCATTTGAGGCCGAGAGACAGACTGACACATTCAGAAGGTAACAATTCTTCTGCTTTTTTTCATACTATTACTTGGAAAATCGAGATGTACTACTAACTCAAGAGTATTATAGAATTATGAAGGTAGACCTCAGCTTCCCTTCAACACTTGATGTATCTGCTGAA</genome_strand>
        <mrna_strand>AAGGTGATATTCAAGGAGCAGATAGAGAAATACAGGTTGCATCATCAGCTTAAGAGGGAAATGGAGATTCAAACAAGTCTTCATCATCCCAATGTGTTGAGGCTATATGGTTGGTTTCATGATGAGGAGCGGATTTACTTGATTTTGGAGTATGCTCATCGCGGTGAGCTGTATAGGGAGCTAAGGAAGATAGGTCGTCTGTCTGAGAAACAAGCTGCCATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTGCAAGTCTCACTCAAGCACTGGCGTACTGTCATGAGAAGCATGTTATTCACAGGGACATAAAGCCGGAAAACCTGTTACTTGATCATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGCTTAAAGATTGCAGACTTTGGGTGGTCTGTACAATCTAGAAGCAAGAGACATACAATGTGCGGAACTCTGGACTATCTGGCACCAGAAATGGTGGAGAACAAAGCTCATGATTATTCAGTTGACAATTGGACCCTGGGGATCCTTTGCTATGAATTTCTATATGGTGTGCCTCCATTTGAGGCCGAGAGACAGACTGACACATTCAGAAG...........................................................................AATTATGAAGGTAGACCTCAGCTTCCCTTC-ACACTTGATGTATCTGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317571" ref_strand="+" ref_description="SGN-U317571        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | histidinol-phosphate aminotransferase, putative, similar to histidinol-phosphate aminotransferase GB:CAA70403 (GI:335562) from (Nicotiana tabacum), Nicotiana plumbaginifolia (GI:12055099) | chr1:27070830-27072823 FORWARD | Aliases: F17M19.7, F17M19_7(evalue: 6e-111, score=397) genbank/nr: gi|3355626|emb|CAA70403.1| histidinol-phosphate aminotransferase [Nicotiana tabacum] >gi|51315816|sp|O82030|HIS8_TOBAC Histidinol-phosphate aminotransferase, chloroplast precursor (Imidazole acetol-phosphate transaminase) (evalue: 4e-125, score=450)">
      <seq>aagattgttgactgcccacccactctttaatgtatgaatttgatgcagctgtaaatggagcaggtgtcatcaaggtgcctaggaacccagactttagcctggacgttgaacggattaccgaagtggttgaacgtgagaaaccaaagtgcatatttctgacatcacctaataatcctgatgggagtataattgatgatgaaactcttttggaaatacttcacctgcccatattggtaatattggatgaagcatatgttgagttttctggaatggagtctaagatgaagtgggtgaagaagcatgaaaatctgattgttcttcgcacgttcagcaaaagagctggtttagctggactaagagtaggatatggagcttttccacggagtattattgaattcctttggcgagcaaagcaaccatataatgtgtctgttgctgctgaagttgctgcttgtgctgctttaaagaaccccacgtatctggagaatgtgaaagtggcactggtgcaagaaagggagagactatttaatctcttgaaagaagtcccgtttcttgatccataccctagctattctaatttcattctctgtaaagtaacgtctggaatggatgctaagaaattgaaggaagaccttgcgactatgggagtgatgatccgtcactacaacagcaaggagttgaagggatatgtccgtgtctctgtaggcaagcccgagcacaccgaggcattgatgaaatgcctcaagcacttctattgatcttgctttgggtcggtacgacaaaatctgaagtgtcttgtgttctcatgctatcattcttcagaaataagtctttgtatggaaatgaggagtcacagagtgttcttcaagtgtacattatgttgaaaaaatggccatacaatggcatttgtagttttatacctttagacttggtctttttgacccttgattgcaaaaaattcatattgtaattcataaaagggttggactcatttgaagaaataatttagtttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="21968" stop="17548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21668" g_stop="21593" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20828" g_stop="20720" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="184" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19657" g_stop="19500" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="342" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19499" i_stop="19262" i_length="238">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19261" g_stop="19119" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="485" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19118" i_stop="18989" i_length="130">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18988" g_stop="18848" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="626" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18847" i_stop="18237" i_length="611">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18236" g_stop="17849" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="1014" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17848" i_stop="17680" i_length="169">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17679" g_stop="17670" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1015" r_stop="1024" r_length="10" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-U317571" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1025</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21668" e_stop="21593"/>
          <exon e_start="20828" e_stop="20720"/>
          <exon e_start="19657" e_stop="19500"/>
          <exon e_start="19261" e_stop="19119"/>
          <exon e_start="18988" e_stop="18848"/>
          <exon e_start="18236" e_stop="17849"/>
          <exon e_start="17679" e_stop="17670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGGGTAAATATGATTTTTAATTATGTTTCGGAGTTCCTCATTATAATCATACTGAGTCTTAGATCCTTTCTCTTCTAGAAGAGTCTTGGGACTTGGACTTGTTTTGGTGCAATAAATCATCTTTGGTTGAATATATTATGGGAAATCTTGGAAAAATAAATGGTATACAGAAGAAGTTAGGAACTAAATGTAAGAGAGAGAGAGAGAGAAATAGATAAGATTCTATTGTCTCTTAGTTCGAGCAATAACTCGGTCTTACATTAGATAAAGCACTCTGACATTCTTATCAATTTTTTTGATCAGTAAAATACCGTCATTATCTGATGACATCTATTTATGGTTGGGTATAAACTCTTTTTGATTCCTGAAACAACTACTGTGATCTAATCATTTTCACTCCAAAGGATATTAGACTCCTAGTTATCATTGTAAGCTGATTATATATGTGCTTTATGGGGGATTGATAGTTTTCATAACACGTAGTTGTATTGGAATCACTGCAGCTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTTCAGTTGCAGCTTTCCTTTTTTCATTTTTTTCACTATTTTCTAGGTTCGTGAGATGGAGAAAATGACTAATAGGAAAGTATTACTAGAATCTCAATTTAGCCAGTAATACTGTGTTTCTTTTTTAATTGGAGGAGAACACCAATGATGAGATGGTCGCGATACTATTCCCATAATCGTTTGGTGGACAATATGGATGGAAAGAAACATACTGATTTTTTGAAGACAAACATTGCAACATGCATAATCTTAAACAAAATTGTATTTCTTTGCTAGATTTTTTGGTGCAACATGGCCATTATAAATGATGTAGATTCCATGCTGCATATGATTGGGGCTTTGCACACTTTTTAATTTTTAACACACCATCTTACTGTTGTTTACCATTTATAGAATATCATTACTTCTCAATAATTAAAAATAATGACATTATTGGTGTAAAAAGAGCTATAAGCAATTATGAAGTAAATTGATCAAATATTAATTCTTTTTTATTGAATTAATCAAAATAACATTTTTATGCAGATAATTATTTTGTATGCTTTCCATCTTTTTGCATGTATTTTATTTTATTTTTTGAAATAAGAGTTTTGCATGTATTTCTTCACCTAAGGGAATAGGACAATCGAAATTTATATTGTATTTAGAGTTTGTTTGGTATTATACATAAACACACTTCAAACATGGTATCAGGCCAGACAGAGGTCCTGAGATCGATCTCACCACCACCTAAATTAAAAAGAATTTCCACGTGCTAGGCCCATGAAAAAGAATCAGGCCGCACGTGAGGGAGCGTGTTGAGAATATTACTAACAAGTAAAAACTGTGATCTTTCTAACAGCTTATGTTTTTAGATGAGATGGTTACACACTTCAATAGATACCTTACCTCCTTTATGTTATTCTATTGAGACAATCTATCATGTTGTTGAACAGTATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATCTGATTGTTCTTCGCACGTTCAGCAAAAGAGCTGGTAGGTTCATTCTTTTCCATTTGACATCTATGAGAGAATGCAATATGTATGCTTGGAAAAACCGTCTGCCTCTTGTTGCTCTTTTGCTGATATAGTGCAAGATCTTATAAGTTGTAGCTGATACATCATCGTCTCCTGAGTATCCTGTTCACGAAATTAGTGTTTACAATTGCTGTCATAAATGGGTGATTGGGATTCAAGTATAGTTGACTAATTTAAGTGGTATTCCAATCCTCAGGTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGAATTCCTTTGGCGAGCAAAGCAACCATATAATGTGTCTGTTGCTGCTGAAGTTGCTGCTTGTGCTGCTTTAAAGAACCCCACGTATCTGGAGGTATCTTAGGATATGGAACATTTCCACTGTGCATTGCTGAGTAACTTTGCTCAAATGTTTCAATCTCTTTTATAAGTAACAGTATCATTTTTTTGGAAAGTTTTACTGATTATTGTGTCATTTATACCAGAATGTGAAAGTGGCACTGGTGCAAGAAAGGGAGAGACTATTTAATCTCTTGAAAGAAGTCCCGTTTCTTGATCCATACCCTAGCTATTCTAATTTCATTCTCTGTAAAGTAACGTCTGGAATGGATGCTAAGAAATTGAAGGTAAACGTGCTTATATCACCTAATTCTGTACTTGTAAAGTCAATTATGTCGCTTCTTCTCTTCCGATTCATTTATTTATTTAATTTGGTCTCATGTCTTTTCATCCTGGGCTATACGTTAATATGTATAAGCTTGATACCAAGGTGAAAGAAGTATTAAAGAACATGAATAAAGTAAAAATTATTTTAATAGATTACCTTGTTTCTTTTATGTTATGGTAGTGCATGGAATTACAGAGAGTTTGTTCGATTGCCAAGATACTCGATGATTATGCTAAGCGAGAGATGACCAATCATTACTGAGGTAGTGAATTAACATAAGATTGAGGATGTGACGTATTTGAGGTCTTTTACAGTGGAATAAGTCGGAGATCATTGGGTTGAGATTGAAGAATTGTTGTTTGATGCGTAAGGTCGTAGTAGTAATAGTAGTATTGACATTTATAGTTAGGCACAGTTGTGAAGTGATGCTATTAGTCCCCATGCTCACCCTTTCTTTGTATTGCATCTGTTTTATGAATATATCGTTCTGCTATTTTGAAGGCGCAGTTGGCCAGTAAATAATGCATTTCAGTCTCTCCTACATTTTAACTGTAGAAACTCGTGTTACAGGAAGACCTTGCGACTATGGGAGTGATGATCCGTCACTACAACAGCAAGGAGTTGAAGGGATATGTCCGTGTCTCTGTAGGCAAGCCCGAGCACACCGAGGCATTGATGAAATGCCTCAAGCACTTCTATTGATCTTGCTTTGGGTCGGTACGACAAAATCTGAAGTGTCTTGTGTTCTCATGCTATCATTCTTCAGAAATAAGTCTTTGTATGGAAATGAGGAGTCACAGAGTGTTCTTCAAGTGTACATTATGTTGAAAAAATGGCCATACAATGGCATTTGTAGTTTTATACCTTTAGACTTGGTCTTTTTGACCCTTGATTGCAAAAAATTCATATTGTAATTCATAAAAGGGTTGGACTCATTTGAAGAAATAATTTAGTTTTTCCTTGATGTTCTCTTTAACTTTTTAAGAAGGATCATACATCTATGTGATTTTCTTTATGAAGGATTGGTTTGTTAATAATTTCACAAGTGGGTGACGTTACTTCTACAAGATAGAAAGTCTTGTTTTTGAAAGAATCGTTTATCACACTTGTTTTTCATTGATTTCAAGCAAGAAAAAG</genome_strand>
        <mrna_strand>AAGATTGTTGACTGCCCACCCACTCT-TTAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATCTGATTGTTCTTCGCACGTTCAGCAAAAGAGCTG..............................................................................................................................................................................................................................................GTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGAATTCCTTTGGCGAGCAAAGCAACCATATAATGTGTCTGTTGCTGCTGAAGTTGCTGCTTGTGCTGCTTTAAAGAACCCCACGTATCTGGAG..................................................................................................................................AATGTGAAAGTGGCACTGGTGCAAGAAAGGGAGAGACTATTTAATCTCTTGAAAGAAGTCCCGTTTCTTGATCCATACCCTAGCTATTCTAATTTCATTCTCTGTAAAGTAACGTCTGGAATGGATGCTAAGAAATTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACCTTGCGACTATGGGAGTGATGATCCGTCACTACAACAGCAAGGAGTTGAAGGGATATGTCCGTGTCTCTGTAGGCAAGCCCGAGCACACCGAGGCATTGATGAAATGCCTCAAGCACTTCTATTGATCTTGCTTTGGGTCGGTACGACAAAATCTGAAGTGTCTTGTGTTCTCATGCTATCATTCTTCAGAAATAAGTCTTTGTATGGAAATGAGGAGTCACAGAGTGTTCTTCAAGTGTACATTATGTTGAAAAAATGGCCATACAATGGCATTTGTAGTTTTATACCTTTAGACTTGGTCTTTTTGACCCTTGATTGCAAAAAATTCATATTGTAATTCATAAAAGGGTTGGACTCATTTGAAGAAATAATTTAGTTTTT.........................................................................................................................................................................CAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317572" ref_strand="+" ref_description="SGN-U317572        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: EMB2196 | histidinol-phosphate aminotransferase, putative, similar to histidinol-phosphate aminotransferase GB:CAA70403 (GI:335562) from (Nicotiana tabacum), Nicotiana plumbaginifolia (GI:12055099) | chr5:3247861-3250079 REVERSE | Aliases: F18D22.100, EMBRYO DEFECTIVE 2196, EMB2196(evalue: 6e-116, score=414) genbank/nr: gi|3355626|emb|CAA70403.1| histidinol-phosphate aminotransferase [Nicotiana tabacum] >gi|51315816|sp|O82030|HIS8_TOBAC Histidinol-phosphate aminotransferase, chloroplast precursor (Imidazole acetol-phosphate transaminase) (evalue: 3e-136, score=487)">
      <seq>cctctcccgccggcaatccagttgtaccagtttctctctctactttctctctctatatattatatatatagtttctctctctactctctctctatatgtaatgatttattgattttacttgttcctctcccgccggctatccagttgatatagcaagttttgattgatgggtgtgattgaattatgcaacatttcatctattagcattgttagagcaaaacccagttctttaaacgaagggaatcggaggaggagaattgcttgtatggcctcttcagtgtcagtgcaagaagaggagagccatcagcagaaacaaggtgtaaatgggggttcttttattcggacccatcttcttaaattgtccccttaccaacccattttgccatttgaggtcttgtccactcgtcttggtagaaagcctgaggacattgtgaaattagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttggggtctatgaaatttccatacatttatcctgatcctgaaagccgcacgctgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcatattggatcctggtgacaagattgttgactgcccacccactttcacaatgtatgaatttgatgcagctgtaaatggagcaggtgtcatcaaggtgcctaggaacccagactttagcctggacgttgaacggattaccgaagtggttgaacgtgagaaaccaaagtgcatatttctgacatcacctaataatcctgatgggagtataattgatgatgaaactcttttggaaatacttcacctgcccatattggtaatattggatgaagcatatgttgagttttctggaatggagtctaagatgaagtgggtgaagaagcatgaaaatctgattgttcttcgcacgttcagcaaaagagctgtggtattccaatcctcaggtttagctggactaagagtaggatatggagcttttccacggagtattattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24942" stop="18910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24642" g_stop="24246" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="475" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="630" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21690" g_stop="21593" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="728" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20828" g_stop="20720" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="837" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19657" g_stop="19500" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="995" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19499" i_stop="19280" i_length="220">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19279" g_stop="19210" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="996" r_stop="1065" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-U317572" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>1071</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24642" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21593"/>
          <exon e_start="20828" e_stop="20720"/>
          <exon e_start="19657" e_stop="19500"/>
          <exon e_start="19279" e_stop="19210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGGGTAAATATGATTTTTAATTATGTTTCGGAGTTCCTCATTATAATCATACTGAGTCTTAGATCCTTTCTCTTCTAGAAGAGTCTTGGGACTTGGACTTGTTTTGGTGCAATAAATCATCTTTGGTTGAATATATTATGGGAAATCTTGGAAAAATAAATGGTATACAGAAGAAGTTAGGAACTAAATGTAAGAGAGAGAGAGAGAGAAATAGATAAGATTCTATTGTCTCTTAGTTCGAGCAATAACTCGGTCTTACATTAGATAAAGCACTCTGACATTCTTATCAATTTTTTTGATCAGTAAAATACCGTCATTATCTGATGACATCTATTTATGGTTGGGTATAAACTCTTTTTGATTCCTGAAACAACTACTGTGATCTAATCATTTTCACTCCAAAGGATATTAGACTCCTAGTTATCATTGTAAGCTGATTATATATGTGCTTTATGGGGGATTGATAGTTTTCATAACACGTAGTTGTATTGGAATCACTGCAGCTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTTCAGTTGCAGCTTTCCTTTTTTCATTTTTTTCACTATTTTCTAGGTTCGTGAGATGGAGAAAATGACTAATAGGAAAGTATTACTAGAATCTCAATTTAGCCAGTAATACTGTGTTTCTTTTTTAATTGGAGGAGAACACCAATGATGAGATGGTCGCGATACTATTCCCATAATCGTTTGGTGGACAATATGGATGGAAAGAAACATACTGATTTTTTGAAGACAAACATTGCAACATGCATAATCTTAAACAAAATTGTATTTCTTTGCTAGATTTTTTGGTGCAACATGGCCATTATAAATGATGTAGATTCCATGCTGCATATGATTGGGGCTTTGCACACTTTTTAATTTTTAACACACCATCTTACTGTTGTTTACCATTTATAGAATATCATTACTTCTCAATAATTAAAAATAATGACATTATTGGTGTAAAAAGAGCTATAAGCAATTATGAAGTAAATTGATCAAATATTAATTCTTTTTTATTGAATTAATCAAAATAACATTTTTATGCAGATAATTATTTTGTATGCTTTCCATCTTTTTGCATGTATTTTATTTTATTTTTTGAAATAAGAGTTTTGCATGTATTTCTTCACCTAAGGGAATAGGACAATCGAAATTTATATTGTATTTAGAGTTTGTTTGGTATTATACATAAACACACTTCAAACATGGTATCAGGCCAGACAGAGGTCCTGAGATCGATCTCACCACCACCTAAATTAAAAAGAATTTCCACGTGCTAGGCCCATGAAAAAGAATCAGGCCGCACGTGAGGGAGCGTGTTGAGAATATTACTAACAAGTAAAAACTGTGATCTTTCTAACAGCTTATGTTTTTAGATGAGATGGTTACACACTTCAATAGATACCTTACCTCCTTTATGTTATTCTATTGAGACAATCTATCATGTTGTTGAACAGTATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATCTGATTGTTCTTCGCACGTTCAGCAAAAGAGCTGGTAGGTTCATTCTTTTCCATTTGACATCTATGAGAGAATGCAATATGTATGCTTGGAAAAACCGTCTGCCTCTTGTTGCTCTTTTGCTGATATAGTGCAAGATCTTATAAGTTGTAGCTGATACATCATCGTCTCCTGAGTATCCTGTTCACGAAATTAGTGTTTACAATTGCTGTCATAAATGGGTGATTGGGATTCAAGTATAGTTGACTAATTTAAGTGGTATTCCAATCCTCAGGTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGA</genome_strand>
        <mrna_strand>CCTCTCCCGCCGGCAATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTATATATTATATATATAGTTTCTCTCTCTACTCTCTCTCTATATGTAATGATTTATTGATTTTAC-TT--GTTCCTCTCCCGCCG-GCTATCCA-G-TTGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATCTGATTGTTCTTCGCACGTTCAGCAAAAGAGCTG............................................................................................................................................................................................................................TGGTATTCCAATCCTCAGGTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328179" ref_strand="+" ref_description="SGN-U328179        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | WD-40 repeat family protein, contains 5 WD-40 repeats (PF00400); similar to pre-mRNA splicing factor PRP17 (SP:O60508) (Homo sapiens) | chr5:22163740-22166346 REVERSE | Aliases: MRB17.2, MRB17_2(evalue: 6e-58, score=213) genbank/nr: gi|42568531|ref|NP_200263.2| WD-40 repeat family protein [Arabidopsis thaliana] (evalue: 4e-56, score=213)">
      <seq>tcgattgaatttttgttgaattggggatcgaatttgatcgaatggaccttctgtgtaaagtctatggcggaacctctgatgaagaagacgacaatggtggaattcaccttcaaagacccattttgccacagccgaaacgagccaaattcgagaattttcatcaagttggcaatcatgtgccactctacaagcctaatccaagtaccaatctcccagcgcaagcttcccttccaggaagatacatttctaagagagagagagctgccatggattcagtggagaaagttccagacctcagcacaacggtttcccctaacagttcaccagttttagggagcattttggattcagttctgccacataatattttgtcagctttgagagatcaaactaaaatctacgggaacatgatccacacgccagaaagactgtctgtagttctagatggacacaaaagatcagttaatgctgtacagtggtctacaagtcatgctcaccttttagtatctgccggaatggatcaaactgtctgtatatggaatgtgtggagcagagatcagaagaaagcacgtgtacttaattgtcacaaagcggctgtcaaagatgtgaagtggtcgccatatggtctatttgtgctctcttgtggatatgactgcacatcaaggttgattgatgttgaaaaaggaactgaaacccaggttttcaatgaggatcaagttgttggagtggtaaaattccatccaaataattataatctcttttctctctggaggttcgaaaggtcaccttaaaatatgggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="31427" stop="26527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31127" g_stop="30801" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30800" i_stop="28066" i_length="2735">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28065" g_stop="27901" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="492" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27900" i_stop="27136" i_length="765">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27135" g_stop="26827" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="802" r_length="310" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-U328179" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31127" e_stop="30801"/>
          <exon e_start="28065" e_stop="27901"/>
          <exon e_start="27135" e_stop="26827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTGAATTTTTGTTGAATTGGGGATCGAATTTGATGGAATGGACCTTCTGTGTAAAGTCTATGGCGGAACCTCTGATGAAGAAGACGACAATGGTGGAATTCACCTTCAAAGACCCATTTTGCCACAGCCGAAACGAGCCAAATTCGAGAATTTTCATCAAGTTGGCAATCATGTGCCACTCTACAAGCCTAATCCAAGTACCAATCTCCCAGCGCAAGCTTCCCTTCCAGGAAGATACATTTCTAAGAGAGAGAGAGCTGCCATGGATTCAGTGGAGAAAGTTCCAGACCTCAGCACAACGGTTTCCCCTAACAGTTCACCAGGTTTTGCAATTGCTATCTTGTCCCTCTCTCTCTTTTTATTTTACTTAAAACTGAGAACTTATTATGAGCTCTGTGTTTGGTTGGTGTTGAAAAATTTCAGATAAGTTAAGTATATGATACTCTTTTGTTTAAAAGAAGATGATTTTGTTCAAAAGGGGATGGTTTTAGGATTGAGACATGGAAGTAATGCGAGTAACAACTTAGGGAGTGTCATTGTTGTCGAATACGTGCTTAAGCCCCATAGAGTGTCAAAACGTATCAAGTTTCTAAGACATACTTTCCCTTGCCAATAAATTGAGAATTTACTATTATCATAAGAAAAGATTCAAATTTTTTTCCCATATATTTCTCATTCATGTTTAGAATTATTACTCTTGGACTAAACATCTATATATATATGTGTGTGTGTGTGTGTGTGTATTGTTTCTTCCTTTATGGTTGGTTTCATGCTTATCTTTGTACTTGAAGTCCTAATAAATCTTAGAGATTTTCTGCGCTTTTTGCTTGTGATAACACTGGGGTTGTTCGGTATGAAGGAAAATGTTTTTCAGGTATGAAGGAAAATGTTGGTTACTCATTTTCTTGTGTTCGGCATGTAAATAAAAAATATTTGTACATAATCTAGTCAAATACTATAGGAGGTAGGAGTGGAGATTAGGGCTATGGGCTGAAGGTGAAAAATGAAGTGTGTTGGAGGGTGGGGCGTGGGGAGAATACAAATATACAATCAATTTGGAATGTCACTTGCAGAACTTGTTTTCTCTACATCCATTAGGGAAGTCATTTTCTTCGTCTTTAAGGAACTTTTTTTCTAGAGAAATGTTCTCCAAAAATTTTACCGACCAAACATGGAAAAATTGAAAAACATTTGTTGGAAAATGTTTTTCTCCATAACAAACACACCCTTAGAGGTCCAAGTTCCTATCACAACTGCAACAGTTAAGCATTTTGGATAGTATCTATGTTGAAGTTTGATATGCTCTGATGAGATTGTAAGTGACCTATGCTCTTCATTTATTTGATGATGAGCCTTTTGTGAATACACAATTACCTTTGTCTCAAAAAGTTTTCTTTAAAAAAGTGTACTTGAAGTTGAAGTGAAAAAAAATGTAGAAGTTGGAGTTATTTCTGGACATGAAGTTCACTTGGAAAGAAAAAGCTAGTTACATACACCTTCATGTCAATATTTCGATATTTCATGTGAGGTTCAATATTTTCAAATACTCATTGTCAAACTAGTATTTGCAAATACTGGAACAATACTAGACGAATATTTATGCCTAAAAGGCTGAAATTTGTCATCCTTTTCCTTTTGAAGAGGGTGAATTTGATGTGAAGGGAATGGTTTAGTGCTTAATTTACAGCTGCAACAAAAGTGTGAGGCAATCTGCTCTGACCATGATAAATAGGATTACCCGGACCTGTGCTTGTGTGTTGTATGTAACAGGCTTGTGGATTGTTGAGGTGCTTGCATATTGATGTAATACCACTTTCATTTTTGAAAAAGTACTAAATAAGAAGCCAATGGATTTAAAATGTTTAATTGTTGCCAAAGAGACCCCTTCAATTTTTCTATGCAAGGATAAGTCATTTATTACTAATGAGAAGCATATTCAGAACCCTTTTATTTATCCGAAGAACTAGGGAACTGAAGAGGTCCTGTTGGAGAAGAGATGCATCATGTTAAGAGGGAAAGAAAAGAGAGGACTATCTTTGATGTTTTGGCAGATTGATGCATTATTGAATGAAGATGAGCTCTTCCAGACATTCTGTGCTTTTATTGTTGCTTATTACAGCTGAAACCTAATTAACCAGCAACCTTTATATTGCTGATTGCTTTATGCTTAACTATCATGTCACCAGCTTAAATTGTGAACTCATGACCCAAAGTTTGTTTTGGATTCGATGTTCAAAAAAAAGGTTTGTTGTGTATAAGCTTACAACTAATACAGACAGTCAGTCCTCCACTTGAGATAACTCATCCCTTCACTTAGCTGCTACCTTGCGTTAGTGGAGCTGTTTGTTAAGAATAAGAGTAACTACCCTTGTCCGAACGCTACTGTCAGTGGAAATCAAGAAGGAATTTGTAACACGATAAGTTATATCAGTGGTTGATTTGCCGAAATCTAGTTTGTAAGATGTGGCTAGCAGTGCAATGGCAGATCATCATTTAGCACCATTTTTGGAAAAATGGCTAAATTGGCTTGTGAGTTCAGTCATCCTTCAATTAACTCCACAGAAATTCCCTTCCCTACTCTTTTTGGCTTGTGAAGTGGTTCATCTTTTAATAAACTCCACAGCAGTCCCTTACCTATAGTGAACTTTTTCCCTTTTTTATTCTCTTGCTATTAAATTCATATAACATTATCTAAACAGTTGCTTTAGTGTCAAGAGTCTCAGTAGAAAAATTACTGGACCCAACTATTGACGTTTGGCAAATATTCACCTTAGGGAAGGACGTTTGTTGAGCAACTCATCAGTTTTTCATTGCAATTTATGTCTATGCGAGGAAGATCTTTAGTTTTGAGAGGATGTCACTGTTGCCCATCAGAGTGTCAAAGGAGGCTCAACAAGTCTTACTAACATGAAAGCAACTAGGAACCTCTCGGCAACTTTTCTTGTTGTGCAAATTTATAGTAATATTTTGTGCAATAGTTAGCACCTTTTCTCTCGATCTTCTGCATTCAATTTGAATTTTATCTGCAACTGATGATTTGGAGTTTTTTTGTCTTTAGTTTTAGGGAGCATTTTGGATTCAGTTCTGCCACATAATATTTTGTCAGCTTTGAGAGATCAAACTAAAATCTACGGGAACATGATCCACACGCCAGAAAGACTGTCTGTAGTTCTAGATGGACACAAAAGATCAGTTAATGCTGTACAGTGGTCTACAAGTCATGGTGAGTGTTTAAACCCTGCCAAAGTTGTAAATCCTATTTATCAAAATTGGCATATAATTTTTTAGCATGGATGCCTCCGGATCCTGATGATTACCTGCTGGCTGCCGCCATTGATGTTGAAATAGATTCAGAACTCCCTTGTGGTTTCAATCCCTACAAATTAGACTTCACTGTGAAACTGCATCAGTTCATGCATTTAGTAGGATGAGACTGGATCAGTTACATGAACTGCTCCAGATATATGCTTGGGCCCTGGTGTACTTTGTCTGTTTACTTCTGATATCTAGAAAGGTAGATACTTTTTCCAAATTTATTGAAAGAAGGACCAGATGGATGTAGTTTTCTTGTTCTTTACCAAAACAATAAGGAAAAGAAGTAATTACTCAAAAAGAATCAAGACTTTGTTGAAAAAAATATAAAGTGGAAAATAAATGAATGGCTAAATTTTTGAAGTTCTGTGCTATCGTAGGAAAAAAATAATTAACTTTAGCCTTTTCAAAAACCAAGAAGAAAAACTTTTGCATTAGGTATTCAAAAACCAAGAAAAAAAATCTCTCTTTAGGTATCAAAATACCAACAATGCTTTGTTAACCAAGCACAATAATTTTCACTATTTTACAATGATGTGAGTCAATGATTCGCTTGATTACTTACGTGAAATCATTTAGTTGTGAAATCTATAATGTTAATTGTATATTTTCTGATTTGTGATGCTTTGCTGATTCAATAGCATACTTGTATTCATGTATGCTATTCACCATGCAGCTCACCTTTTAGTATCTGCCGGAATGGATCAAACTGTCTGTATATGGAATGTGTGGAGCAGAGATCAGAAGAAAGCACGTGTACTTAATTGTCACAAAGCGGCTGTCAAAGATGTGAAGTGGTCGCCATATGGTCTATTTGTGCTCTCTTGTGGATATGACTGCACATCAAGGTTGATTGATGTTGAAAAAGGAACTGAAACCCAGGTTTTCAATGAGGATCAAGTTGTTGGAGTGGTAAAATTCCATCCAGATAATTATAATCTC-TTTCTCTCTGGAGGTTCGAAAGGTCACCTTAAAATATGGGATA</genome_strand>
        <mrna_strand>TCGATTGAATTTTTGTTGAATTGGGGATCGAATTTGATCGAATGGACCTTCTGTGTAAAGTCTATGGCGGAACCTCTGATGAAGAAGACGACAATGGTGGAATTCACCTTCAAAGACCCATTTTGCCACAGCCGAAACGAGCCAAATTCGAGAATTTTCATCAAGTTGGCAATCATGTGCCACTCTACAAGCCTAATCCAAGTACCAATCTCCCAGCGCAAGCTTCCCTTCCAGGAAGATACATTTCTAAGAGAGAGAGAGCTGCCATGGATTCAGTGGAGAAAGTTCCAGACCTCAGCACAACGGTTTCCCCTAACAGTTCACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGGGAGCATTTTGGATTCAGTTCTGCCACATAATATTTTGTCAGCTTTGAGAGATCAAACTAAAATCTACGGGAACATGATCCACACGCCAGAAAGACTGTCTGTAGTTCTAGATGGACACAAAAGATCAGTTAATGCTGTACAGTGGTCTACAAGTCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACCTTTTAGTATCTGCCGGAATGGATCAAACTGTCTGTATATGGAATGTGTGGAGCAGAGATCAGAAGAAAGCACGTGTACTTAATTGTCACAAAGCGGCTGTCAAAGATGTGAAGTGGTCGCCATATGGTCTATTTGTGCTCTCTTGTGGATATGACTGCACATCAAGGTTGATTGATGTTGAAAAAGGAACTGAAACCCAGGTTTTCAATGAGGATCAAGTTGTTGGAGTGGTAAAATTCCATCCAAATAATTATAATCTCTTTTCTCTCTGGAGGTTCGAAAGGTCACCTTAAAATATGGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342747" ref_strand="+" ref_description="SGN-U342747        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ggattttagcacttttttgagttgttaggttgtaaatttatagtttgtaaatattgaaatggagtaggtggagctagaaatttaaaagttttcttttttatagctgtggtgtacttgccaacttgagtgctacctcccatcgacaacaggtacatgtagcttcgtgtattgtctttactaggatttgaacctgaaacctcgcgagtagtaggccacacacccttgggtacagctagaaaatgaagttaatggagtttgaatttgacaccgagtatataacttgttttatgagtacatggcttgatttacgaaatattggaagtgctccttggagaaggtccacgttgatgcattatgaagtagctctagcttcttcttcttcttctttttttcctttttcaaatatagctataatgaattatgacaagttgatgttgaatcaaatgatgtgcactaccctagctaagaataacttgtagcagctataacatcctactttatgaaagagcaagaaaagtttggactatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="37955" stop="36826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37655" g_stop="37126" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-U342747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37655" e_stop="37126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTTAGCACTTTTTTGAGTTGTTAGGTTGTAAATTTATAGTTTGTAAATATTGAAATGGAGTAGGTGGAGCTAGAAATTTAAAAGTTTTCTTTTTTATAGCTGTGGTGTACTTGCCAACTTGAGTGCTACCTCCCATCGACAACAGGTACATGTAGCTTCGTGTATTGTCTTTACTAGGATTTGAACCTGAAACCTCGCGAGTAGTAGGCCACACACCCTTGGGTACAGCTAGAAAATGAAGTTAATGGAGTTTGAATTTGACACCGAGTATATAACTTGTTTTATGAGTACATGGCTTGATTTACGAAATATTGGAAGTGCTCCTTGGAGAAGGTCCACGTTGATGCATTATGAAGTAGCTCTAGCTTCTTCTTCTTCTTCTTTTTTTCCTTTTTCAAATATAGCTATAATGAATTATGACAAGTTGATGTTGAATCAAATGATGTGCACTACCCTAGCTAAGAATAACTTGTAGCAGCTATAACATCCTACTTTATGAAAGAGCAAGAAAAGTTTGGACTATGGA</genome_strand>
        <mrna_strand>GGATTTTAGCACTTTTTTGAGTTGTTAGGTTGTAAATTTATAGTTTGTAAATATTGAAATGGAGTAGGTGGAGCTAGAAATTTAAAAGTTTTCTTTTTTATAGCTGTGGTGTACTTGCCAACTTGAGTGCTACCTCCCATCGACAACAGGTACATGTAGCTTCGTGTATTGTCTTTACTAGGATTTGAACCTGAAACCTCGCGAGTAGTAGGCCACACACCCTTGGGTACAGCTAGAAAATGAAGTTAATGGAGTTTGAATTTGACACCGAGTATATAACTTGTTTTATGAGTACATGGCTTGATTTACGAAATATTGGAAGTGCTCCTTGGAGAAGGTCCACGTTGATGCATTATGAAGTAGCTCTAGCTTCTTCTTCTTCTTCTTTTTTTCCTTTTTCAAATATAGCTATAATGAATTATGACAAGTTGATGTTGAATCAAATGATGTGCACTACCCTAGCTAAGAATAACTTGTAGCAGCTATAACATCCTACTTTATGAAAGAGCAAGAAAAGTTTGGACTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U316209" ref_strand="+" ref_description="SGN-U316209        Tomato 200607 #1 [30 ESTs aligned] arabidopsis/peptide: | Symbol: None | 20S proteasome beta subunit C1 (PBC1) (PRCT), almost identical to GB:AAC32069 from (Arabidopsis thaliana), EST gb:T76747 comes from this gene; identical to cDNA proteasome subunit prct GI:2511567 | chr1:7626272-7628251 FORWARD | Aliases: F8K7.15, F8K7_15(evalue: 2e-106, score=382) genbank/nr: gi|18395025|ref|NP_564149.1| 20S proteasome beta subunit C (PBC1) [Arabidopsis thaliana] gi|17473525|gb|AAL38246.1| proteasome subunit [Arabidopsis thaliana] gi|21387087|gb|AAM47947.1| proteasome subunit [Arabidopsis thaliana](evalue: 1e-104, score=382)">
      <seq>aatcggccgaattgcttgcacaattgaagtgttcttcaagccatcaaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgcatcgacttctctccaagattgttatttaatagattcagttgtctgtcactaatggatgttaacattctagttagtttacaatcctctatttgagcatcccaacgaatttctgctgccatcacacactagacaaattatacagaagatgaatcaatttctttggggggactccttgtggaattgcaatattgtaggaaagataaatgttggaactgatattattatacaatctttaatttcctctgaaaaaaaaaaaaaaaaaacgcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66522" stop="71992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66821" g_stop="66935" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="126" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="308" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="416" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="506" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="591" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="686" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71297" g_stop="71689" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="1079" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1081" polyA_stop="1099"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-U316209" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1068</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66821" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTTGCACAATTGAAGTGTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCAACGAATTTCTGCTGCCATCACACACTAGACAAATTATACAGAAGATGAATCAATTTCTTTGGGGGGACTCCTTGTGGAATTGCAATATTGTAGGAAAGATAAATGTTGGAACTGATATTATTATACAATCTTTAATTTCCTCT</genome_strand>
        <mrna_strand>TTGCTTGCACAATTGAAGTGTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCAACGAATTTCTGCTGCCATCACACACTAGACAAATTATACAGAAGATGAATCAATTTCTTTGGGGGGACTCCTTGTGGAATTGCAATATTGTAGGAAAGATAAATGTTGGAACTGATATTATTATACAATCTTTAATTTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321051" ref_strand="+" ref_description="SGN-U321051        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | transcriptional regulator Sir2 family protein, contains Pfam domain PF02146: transcriptional regulator, Sir2 family; | chr5:2871454-2873785 FORWARD | Aliases: None(evalue: 5e-112, score=401) genbank/nr: gi|30682591|ref|NP_850797.1| SIR2-family protein [Arabidopsis thaliana](evalue: 4e-110, score=401)">
      <seq>agcggtggaaaattgttcgacgtggaagacgatacgttcgatggcgaaatagcagaaaacctaaaaataaggaaattgagagcaaaaatctgaaattatagtccatttctatggtcatgtcaatgtccctgcgactttgttgcagaccttcaatttctggtttcaagaataaaagagatttgttgggcttagaattggcagcttatcaatcaagtaagacaatggggaaatggttaagtggagtgaagaagttcattccctttgagggatatgttaagtctgtgaaaacggcagcacgaatatcatttccaaagatctcagcagactgtcaagataaagagccttcaaattttttgagtcacaagaagatggttccttattcgaacccccctagcacggaagatgtggatagtttgtatgaattctttgatagaagtaccaagcttgttgtattgacgggagctggcatgagcacagagagtggaattccggattacagaagcccaaacggagcttatagtacgggtttcaaaccaattacccatcaggtgatttgaaggagtttctacgatcaatcaaggctcgaaggcgttattgggcacggagctatgctggctggcgacgtttcactgctgctcaacctagtacaggtcatatagctctatcatctcttgagaaagcaggccatataagttttatgattacacagaatgtggacaggctgcatcaccgagctggaagcaatcctcttgaattgcatgggactgtctacattgttgcctgtacaaattgtggtttttctctacctcgagatctatttcaagatcaagtgaaggctcataatcccaagtgggcagaagctattgaaaatttggactatgacagtcgatcagacaagagttttggaatgaaacaaaggcctgatggggatattgagattgatgagaagttctgggaagaggatttctacattcctgaatgtcagagctgccaaggagttctgaaacctgatgttgtcttctttggggataatgtccccaaatctagggcagatgctgctatggaagctgcaaagggatgtgatgccttccttgtacttggttcatctttgatgaccatgtccgccttccggcttatcaaagctgcacgtgaggcaggtgctgctactgcaattataaatattggtgctacacgagctgacgatattgtacctttgaaaattagtgctcgagttggagagatacttccaagattgctcaatgttggatcattaagtatccctgctccctagttcctgattcagagaactgttaattaatagcatcccagattctttttcatcagttgctgcaaatggattgtacacttggtcggaacgtgctagttcgccctgcatctcacgtgtggtaaattcactaaatttatctcgacgttgtttgtaattcttaaaaatgaacttctcaactaccacacacactatttatgtgcgcgtttgtattgtcacacaactcgactactttgaatttctgatttagtgagttgaagctgaaatggtgcgaaaatacacagaatattgcttggaaatgatgaattttagtatggccttttgcttaaagatttacattatgcttgcataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="74790" stop="83177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75090" g_stop="75247" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75248" i_stop="76621" i_length="1374">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76622" g_stop="76664" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="201" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76665" i_stop="76756" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76757" g_stop="76991" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="436" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76992" i_stop="77722" i_length="731">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77723" g_stop="77788" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="502" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77789" i_stop="78366" i_length="578">
            <donor d_prob="0.176" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78367" g_stop="78423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="559" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78424" i_stop="79622" i_length="1199">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79623" g_stop="79783" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="720" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79784" i_stop="79858" i_length="75">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79859" g_stop="79988" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="850" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="79989" i_stop="80835" i_length="847">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="80836" g_stop="80997" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="851" r_stop="1012" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="80998" i_stop="81733" i_length="736">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="81734" g_stop="81861" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1013" r_stop="1140" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="81862" i_stop="82243" i_length="382">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="82244" g_stop="82343" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1141" r_stop="1240" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="82344" i_stop="82468" i_length="125">
            <donor d_prob="0.596" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="82469" g_stop="82870" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1241" r_stop="1642" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1643" polyA_stop="1658"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-U321051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1642</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75090" e_stop="75247"/>
          <exon e_start="76622" e_stop="76664"/>
          <exon e_start="76757" e_stop="76991"/>
          <exon e_start="77723" e_stop="77788"/>
          <exon e_start="78367" e_stop="78423"/>
          <exon e_start="79623" e_stop="79783"/>
          <exon e_start="79859" e_stop="79988"/>
          <exon e_start="80836" e_stop="80997"/>
          <exon e_start="81734" e_stop="81861"/>
          <exon e_start="82244" e_stop="82343"/>
          <exon e_start="82469" e_stop="82870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGTGGAAAATTGTTCGACGTGGAAGACGATACGTTCGATGGCGAAATAGCAGAAAACCTAAAAATAAGGAAATTGAGAGCAAAAATCTGAAATTATAGTCCATTTCTATGGTCATGTCAATGTCCCTGCGACTTTGTTGCAGACCTTCAATTTCTGTAAGTTTATAATAATCTAACCAGCAGCAAATTTTATCTAATTGTTGATTTCGTTGATGTTTTTATGCTAAATTGCTGTAAGTTTTAGATTTATGAGATACATTTCTAGACGTATAGTGGGAAGTGTTTTCTCTCTCTTTTGTTTCTTCTTCCCTTTTTTGTTTTGTTTTGTTTTTGCTTTTGAAGTTTGATCTAATCATATGGCGCCTATGGGTTGGGTAGGCTTAGTGGTCAATGACGTAAGTTAAGTTGTAAGTATCATGAGGTTTGAAGTTCAATTCTCAATAGAAACAAAAACACTAGTTGATTTGGATCGAGGTATGTGGCATTTGTTGCTGGTGACAGGTGATAGGTATATGTGGAATTAGTCGAGGTGTAAAAGTTGGTCCAAGCAGTTCGGTTATAAGAAAAAAAGGTTATCATATGCGAGGACCAAATGACCCGTACATGTATCTTTTAGTTAGATAAAAATGGACTTGGTGCCAGTTCGCTTGCACTTTGACTAATATCAAGTGTATTTGCTACCTCACACCAGTAAATACCGAGTAAGTGCCCGTTTGGATTGACTTATTTTAGGTGCTTTTAAGCCAAAATAGCTTTTAATCAGTTTTGAAGTGTTTGGGTAAAGCTAAAATGACAGAAATAAGTTAAAAGTCAAACTCCAGAAAATCTTACTTATGACTTTTGGCTTATAATTCATAAGCCAAAAGCCAATCCAAACAGGCCCTAACACTATCCATCAAGCTGTCCTTACTCCTTACCTCGTATTTTTGCATCGGTTGTTGGTTAAACCTGACACCTTCCGATTCTCAACCTACTTCGTTGTCCATACTAGACCAGTATATTTATACAAGGGGATTCAAAAGAGTGCTAGAATATCACAACTGGAAATTGGAATTGTGAATTAAAGCAAATACTTGGTAGCTCTGTCTATCAAGGCTGTCCTTACTTAGTATTTTTGTTTCAGCTAGGTTTTATACATGACACCTCATATTCTCAACGTCCTTCATTGACCACTAGACTAATATATTTGTTCACGGGGATTCAAAGAAGTGCTAGAATATCACAATTAGAAATTGTAGCTGTGACTTAAAGCAAATTTTTGAACCTTTCTTTATTACTACGCTGGAATCTTCTGTTTATATTCAACAATTTACACAACAACTACCTCATATATATAACAAAAGATAGTTCATTTTTACTCTATTTGGACAGTATGATTTACAGTGAAGGGGATTCAATTGAACCCCTTATCTTTACTTAGCTCCAAAGTCCAAACCTTTTCTTTTGGATATTAGAGTGATGGTACCTATAATATAACATTTTTGGTGGTGTGGATAAATTATAATGATAACATGCGAATTGAATGGGCAGGGTTTCAAGAATAAAAGAGATTTGTTGGGCTTAGAATTGGCAGGTAAGTCTTTGTTCATGAAAACCAAGTTCTTAATGTATGAACTTATTAGATGGCTCTGGCTCTGAGCAGTTTTTTTTCTTTTGTGTTTACAGCTTATCAATCAAGTAAGACAATGGGGAAATGGTTAAGTGGAGTGAAGAAGTTCATTCCCTTTGAGGGATATGTTAAGTCTGTGAAAACGGCAGCACGAATATCATTTCCAAAGATCTCAGCAGACTGTCAAGATAAAGAGCCTTCAAATTTTTTGAGTCACAAGAAGATGGTTCCTTATTCGAACCCCCCTAGCACGGAAGATGTGGATAGTTTGTATGAATTCTTTGATAGAAGGTAGGAATTGTGCTCCTTCTCTGTTTTGAATTAGAAAGGTCAAAAAAATACAAAACGGAAGTTTAACTAATTCTATTGTGCTGGAGAATACTTGGTTATACTTGGAGAAATTTGGTCGATTAGTTGTTTGCCGTTTTTCTTTTGTGCTGGTTGATTAATTGTGAAATGTGTTTTACTACAAAAGAGAGTGCAACTGAATTAGCATTTCCTAAGCAATAATCAAAGATAGAATCCCTTGAAACTTATGACATCATTTACATCAAATCCCTCAATTTATTTCTTGCATTTGGTAGATTTATAACAATAACAAGACCGTTGATTCTGACTACACTTCTCTTTACTGCTATTAAGTTCAATATTTTGAAGTCATAAAATTCAAAAAAAAAAAGAGGAAGAAAGATATTATTTCAAAGTCGTTTAGCTAAATAATATGTAGTTAAAAGTCCAAGTAGCTAAAGTTTTTGTGATATAATACACATAGTATAGATGTGTTTTTAATTATTATCTGAATTGACTACTACTATGTGATAGGCCTACATGCAATTACTTTCTATATTACAAACTAGAGCTTTAGTGGTGATTCATTTGCTGATTCTTTAATTGTAGGTCAAATTGGGTGTCCCTTTAACCACACTTCAGTTATAAAATACTACTTCCTTTTGTGTTTTCTTCTAATATCAACTACACTATGATATCAATTACTGACTGGTTCCTTTCCATTGTTTTTGTAGTACCAAGCTTGTTGTATTGACGGGAGCTGGCATGAGCACAGAGAGTGGAATTCCGGATTACAGAAGGTTGGTTTAAAACTAGATGAGCATGCTCAACGTTCTCAGCAGTTAACAGTTTGATCATTCTCTGAAGTTGATAATCTGAGTTACACTTCAAAAGGAAATACATTTTTACTGCAAAGGGAGGAAGACGTTGTCAATATTTAATTTCTTATCCTAGCTGAGTTACATTTCTATAAAGGAAGACACATTTCTTATTAAAATAAGAAGGCTGTCAACATTTAGTTTTACTGCTATTTGGTGCAGTTATAAACAAATTAAAACATCTGACTTTTTGGGTGTTGAGCATTTATATAAATTGTATGAAGTGAGGATTAAATCTGAAAGTGCGGCGAGATGTCCTGTTTGATTCAATGCTGGACGGTATGTGAAACCAAAGTTTCTTTGTAATTACTCTATTTTGAGCATTCCCTGCAGTTTTCGCCTTTTTCTATAGGGTGGTACGTCTGTGTTGTGTTTAAGAGTGTAGTTGGGGATTCAGTATTACAGCTTTGTGCTGCTTCTAGATTTTATTTTGGGCTGTATAAAGAAGTTAAGTGATATTTTTGGACAAATGGTAATGCTTTTCCCTCTTCTCTTGGCAGCCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAGGTGATTTGAAGGCATGTGCTATGATTCTGGGTTCCATTAAAGTGTCATTATTCATTTATAAATACCATTTCTTGCATATTTGAAAGAGGAAAAAGAATGTATTAGTCTACTACGGATTTAGTTCTGTTCATCTCTAGACCTATATATTTCTTGTAGACAATAAATCCTACATGAATTTAGTTGTGGTCATCTCCAGAAATATATACATGATACAACAACAGTCCCAAATAAATCAGGATTGACTTATGAATACTCATGATTCTCTATTTAAGCTCAAATCATGTCATCATCATACCCAAAAAGTACTTTAAAAAATAAGTTAGACCTATTCCCAACTAGTAGATCTCATCTATATGGATCTTTTCCTTCTGCTGTGTCCTATCTTTAGCTAAGTGTGCTTTGATTCCCAGAAATTGTAGGTCTTTCGAGACAACTTCCTTATTGTGATTCCTACCTCTTCCTCGTTAACACGTTCACTCACCATAGTTGCATTTGCACATCTATGAACAAGATGTACTGGTTGCAGCTGTAGGTCGATGCAGAGCATGACCAAACATCTCAGGCAACCTTCTCCCGTTTTATCCTCAATGCATACTACTTGCACTGTCTGGCAAATTTGATCATTTCTTAATCTTATCCATCCTTCGGGCTATCACATTATACCCTAGTAGCACTTCTCCATTTCAACCATTTAGTGCTAATTCCCGGAGTAATATCTAGATATGCAAACTGATTGTACTTTGGCACCACCACCCCGTGTAGTCTCACCTCAACTTCGCTCTTCTCATGCTGACTAAACTTGCATGCGTGTCAATTATTCCACTAGTTAGTTGCTACCTCTTGCCAGAACAGGTACCGACTCTATGTTGCTCAGATTCTCCATAAATGATGTTGCAGCCGTGTTGGATCCTTCAAAATGTACTACTTTTGAAGGATCCGACATGCACCCGTAGACATTTTTTGAAGATCCAAGGAACATAGGCCATGCCATAACTCTATCACTAATGCTTAGGCAGATAGGAAGTAATCACCTAGTGATTTTTCCTTTTTTAGGATTTGAATTGGTCTCCCAAAGTTACAATCCCGCTTCATTTTCTGCTAAACCACATTCTTAGGTGCTAGAAAAAGCTCCGTTTTCATTAAAATTTACAGAGTCAGCTTTTGCTTACTGCCTACATTCTAACTGTCTGATTTATATATCCAATTGTAGGAGTTTCTACGATCAATCAAGGCTCGAAGGCGTTATTGGGCACGGAGCTATGCTGGCTGGCGACGTTTCACTGCTGCTCAACCTAGTACAGGTCATATAGCTCTATCATCTCTTGAGAAAGCAGGCCATATAAGTTTTATGATTACACAGAATGTGGACAGGTAGTTGGCTCATCTTTTCATTTCTTCGTTGATTTTATGAGCCTTTTGACACTAATTTTATACTCTTCCTCTCAGGCTGCATCACCGAGCTGGAAGCAATCCTCTTGAATTGCATGGGACTGTCTACATTGTTGCCTGTACAAATTGTGGTTTTTCTCTACCTCGAGATCTATTTCAAGATCAAGTGAAGGCTCATAATCCCAAGGTTATCTTTATTCAGTTATTCTGTTAATTGAGTTTGAAATCACTGCCTAATTATTGATTTGAGTTATGTTGATTTGACTTCATGAAAGATGACATAGAAATCTATTTCAGCACTGTTCCACAAGGCACTAGTCTATATGTATGTCCAAGTCCTATAGAACTATTAACACCGACGATGCTTTCCCTATACATGTCTAGCTATAAGAGGAGGGACATTTTGGTGCATAGAATGTTACTGATTCCATTGTCACCTCTATTTACCACAAAAGGATTTCATTGTCACACAACCATCTGCCTTACCCTCGGGCCTTGACACATCAGTTCCTCCCCTACCCCAAACCTTCCTTCTTTGGCCTGCAATCCTGTACCTGTTACAGGCTTACAGCAATTGCTTTTCCTTGTCATCCATCATCTCATCTTAAAGAGTTCTGTATCTACATACAACTGTGTTACCTTGTTTATGCAGAAAACTGTCATTCATTGATATTGGACTGCAATAAGGGTCTATTCAGTTTGGATGATAACACAGCATATGTTAAGATTTGGATTAACAAATATTAAGTACTAAATTAGCTGCCTAACTACCATGTTCAGTTATGACATCATATATGTCTTCTTGTGTATAGCAAGCATTGGTTTTCGATGGTTTATTTGGCAACATTATTAGAATTTAACAGCTAGCCCTTGATTATGGTGTATGAGATATAATCTAAGGGGTATTACAATAGCCAACCCAAAATCTGTAAACTGGAATAACAACAAATCATGTTCTCTTCTTGATCAACCTAATGTATTCACTGTTTTGTTCTGTTGGCATAAACTGAACTGGAAATATTATAGTACTGCAGTGGGCAGAAGCTATTGAAAATTTGGACTATGACAGTCGATCAGACAAGAGTTTTGGAATGAAACAAAGGCCTGATGGGGATATTGAGATTGATGAGAAGTTCTGGGAAGAGGATTTCTACATTCCTGAATGTCAGAGCTGCCAAGGAGTTCTGAAACCTGATGTAAGTGATTTTTAATTTATCAGATGAACTAGTTATATAAACTTGGAGCAGCTTCTCTTTTCTCTTGCTTTATGTTTTTTCATTTCCTAGAGGTTAAAATTGGCCTAGGAAGAATTGAGTAAGATGATTCCTTTGTTATCACGAATATGTCCAAGAGTAATCTTGAATTGAAGAACGAGCCTTTCGCCGGGGTGAATAAGAATAGCCAATAGGTACAGATGACTTTCAAATTTCTGCCATGTGCCATAATTATACACATAATAAGTCTGCTGATTTATAATGAAAATTGTATGGACTTATTACATATATCTATTCTTGCTCCGTTCTAATTATTGCTCCGGATCTAGAAAGAAGGTTGGATCTTGCAATGCAAAACCATTGGGAACTTATTTTCGATTTCGCTGTAGGATATCAAAACTCTATACGTTCTATGTTTTTTTTAATAGTTAGTTCAAAGTTTATGCTATTTATTACAGTACCTAGTCAGTGGTATACTTTTAACTTCTAAAAGTTCATTAAAAAGAAAAAAGACACAAATTCACCTTTACTAGTAATTTTATATAATGACTCCACGAGGTAGTGGTAAGGTCTGCGTACACTCTACCTCTCCAGATCCCACTTAGTGGGTATTACATTGGGTATGTTGTTGTATTCGATCAATCATTGTTCCTCTGAATTTTAGATCATATAGACAGTAGTGTACTGGTATAAGTCACTAAAATATGGTACATTACAGGTTGTCTTCTTTGGGGATAATGTCCCCAAATCTAGGGCAGATGCTGCTATGGAAGCTGCAAAGGGATGTGATGCCTTCCTTGTACTTGGTTCATCTTTGATGACCATGTCCGCCTTCCGGCTTATCAAGTGAGAATTTGCTTCTCTCCCATTTTAATCAAAAGAAAATCTGGTCTACTTGGTTACTCTTAACTTGTTTGCTCATTCGGTTCTTGTCTAAGTGCATCATTGATGAATTGGTCTTATATCAGCATAGGATTTTTTTCACAAGGATTGCAATTGCATGACCCGAGATTTCATTTCTGAGAGTGGTCCCTTCTGATTCACTTACTCTTTCTCCGAAAATAGTTCCAGATGGTTCTGGAAACGTAACATTACTTCTCTCTTTGCATATACCTGTTAGATTATCACATCATAATTTCTTGGTTTCCTTCTTTTTGTTGGTTTTTATTTCCTTCTCTCCCTTTTGGATAACTTATATCAACAACATGAGAATAAATCCTTGCAACAGAGCTGCACGTGAGGCAGGTGCTGCTACTGCAATTATAAATATTGGTGCTACACGAGCTGACGATATTGTACCTTTGAAAATTAGTGCTCGAGTTGGAGAGGTTAGTGCTTTGTATGGAACACCAGAAGTTCTAGTTTCCGTTATAGTCATCCTCGCATTCTATTTTTACAGCTTTTCTTGCTGCAACGTTCCTGGAACCTTAACTTATACAATTATATGATGCAGATACTTCCAAGATTGCTCAATGTTGGATCATTAAGTATCCCTGCTCCCTAGTTCCTGATTCAGAGAACTGTTAATTAATAGCATCCCAGATTCTTTTTCATCAGTTGCTGCAAATGGATTGTACACTTGGTCGGAACGTGCTAGTTCGCCCTGCATCTCACGTGTGGTAAATTCACTAAATTTATCTCGACGTTGTTTGTAATTCTTAAAAATGAACTTCTCAACTACCACACACACTATTTATGTGCGCGTTTGTATTGTCACACAACTCGACTACTTTGAATTTCTGATTTAGTGAGTTGAAGCTGAAATGGTGCGAAAATACACAGAATATTGCTTGGAAATGATGAATTTTAGTATGGCCTTTTGCTTAAAGATTTACATTATGCTTGCATAAAAAAA</genome_strand>
        <mrna_strand>AGCGGTGGAAAATTGTTCGACGTGGAAGACGATACGTTCGATGGCGAAATAGCAGAAAACCTAAAAATAAGGAAATTGAGAGCAAAAATCTGAAATTATAGTCCATTTCTATGGTCATGTCAATGTCCCTGCGACTTTGTTGCAGACCTTCAATTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAAGAATAAAAGAGATTTGTTGGGCTTAGAATTGGCAG............................................................................................CTTATCAATCAAGTAAGACAATGGGGAAATGGTTAAGTGGAGTGAAGAAGTTCATTCCCTTTGAGGGATATGTTAAGTCTGTGAAAACGGCAGCACGAATATCATTTCCAAAGATCTCAGCAGACTGTCAAGATAAAGAGCCTTCAAATTTTTTGAGTCACAAGAAGATGGTTCCTTATTCGAACCCCCCTAGCACGGAAGATGTGGATAGTTTGTATGAATTCTTTGATAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAAGCTTGTTGTATTGACGGGAGCTGGCATGAGCACAGAGAGTGGAATTCCGGATTACAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAGGTGATTTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTCTACGATCAATCAAGGCTCGAAGGCGTTATTGGGCACGGAGCTATGCTGGCTGGCGACGTTTCACTGCTGCTCAACCTAGTACAGGTCATATAGCTCTATCATCTCTTGAGAAAGCAGGCCATATAAGTTTTATGATTACACAGAATGTGGACAG...........................................................................GCTGCATCACCGAGCTGGAAGCAATCCTCTTGAATTGCATGGGACTGTCTACATTGTTGCCTGTACAAATTGTGGTTTTTCTCTACCTCGAGATCTATTTCAAGATCAAGTGAAGGCTCATAATCCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAGAAGCTATTGAAAATTTGGACTATGACAGTCGATCAGACAAGAGTTTTGGAATGAAACAAAGGCCTGATGGGGATATTGAGATTGATGAGAAGTTCTGGGAAGAGGATTTCTACATTCCTGAATGTCAGAGCTGCCAAGGAGTTCTGAAACCTGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCTTCTTTGGGGATAATGTCCCCAAATCTAGGGCAGATGCTGCTATGGAAGCTGCAAAGGGATGTGATGCCTTCCTTGTACTTGGTTCATCTTTGATGACCATGTCCGCCTTCCGGCTTATCAA..............................................................................................................................................................................................................................................................................................................................................................................................AGCTGCACGTGAGGCAGGTGCTGCTACTGCAATTATAAATATTGGTGCTACACGAGCTGACGATATTGTACCTTTGAAAATTAGTGCTCGAGTTGGAGAG.............................................................................................................................ATACTTCCAAGATTGCTCAATGTTGGATCATTAAGTATCCCTGCTCCCTAGTTCCTGATTCAGAGAACTGTTAATTAATAGCATCCCAGATTCTTTTTCATCAGTTGCTGCAAATGGATTGTACACTTGGTCGGAACGTGCTAGTTCGCCCTGCATCTCACGTGTGGTAAATTCACTAAATTTATCTCGACGTTGTTTGTAATTCTTAAAAATGAACTTCTCAACTACCACACACACTATTTATGTGCGCGTTTGTATTGTCACACAACTCGACTACTTTGAATTTCTGATTTAGTGAGTTGAAGCTGAAATGGTGCGAAAATACACAGAATATTGCTTGGAAATGATGAATTTTAGTATGGCCTTTTGCTTAAAGATTTACATTATGCTTGCATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317098" ref_strand="+" ref_description="SGN-U317098        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: ANAC002 | no apical meristem (NAM) family protein, contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC domain protein NAM GB:AAD17313 GI:4325282 from (Arabidopsis thaliana) | chr1:268330-269819 FORWARD | Aliases: T1N6.12, T1N6_12, ANAC002(evalue: 7e-96, score=347) genbank/nr: gi|40647397|gb|AAR88435.1| NAC domain protein [Lycopersicon esculentum](evalue: 2e-167, score=591)">
      <seq>tgaaactaacacaaagcaggagcaggagcagcaacaaacagagagaagaaaacagaggaagataagaggaaaatttatcgaattcgaatcgagagaaaaggggaagtgaagttgcgaagagtgagaatttcaaaggaaatgaacaaaggagcaaacggaaatcagcaattggagttaccggcgggattcagattccatccgacagacgacgaattggtgcagcactatctctgcaggaaatgcgccggacagtcgattgctgtatcaattatagctgaaattgatctttacaagtttgatccatggcagttgcctgagaaggctttgtacggtgaaaaagagtggtattttttctcaccaagggatagaaaatatccgaacggttcacggccgaaccgagcagcaggaaccggttattggaaggcaaccggagctgataaaccggtgggaaaacccaaaaccttagggataaagaaggcacttgtgttctatgccggaaaagcacccagaggtataaaaacaaattggattatgcacgagtaccgcctcgccaacgtggaccgctctgctggcaagaacaataacttgaggcttgatgattgggtattgtgtcgaatatacaacaagaaaggcacacttgagaagcattacaatgtggacaacaaggaaactacaagctttggagaatttgatgaagaaataaaaccaaaaatattgcccacacaattagcaccgatgccaccacggcctcgatcgacaccagcaaacgactacttttatttcgagtcatcagagtcgatgactagaatgcacacgacaaactcgagctctggctcagagcatgtcttgtcgccatgtgacaaggaggttcagagcgcgcccaaatgggacgaagaccacagaaacacccttgattttcagctaaactatttggatggtttactaaatgaaccatttgaaacccaaatgcagcagcaaatgtgcaactttgaccagttcaacaatttccaagacatgttcctatacatgcaaaaaccttactaaaattgtataaattcattggatctaaattgagtgtgatccatgacattttctttgttctttggtggtgtaggtcaactttttattaagtagtttagaaaagtacaaaatgctagtcaaatttggtgggctacagcacaaatgagccttgataagcatagccaaagagtcatatagaagggcttattattattgtaaggtacatgtaaaaacaaatgaaaatttgttaatatcaagttatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="87724" stop="90281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88024" g_stop="88339" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88705" g_stop="88979" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="591" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88980" i_stop="89289" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89290" g_stop="89981" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="1285" r_length="694" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-U317098" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1283</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88024" e_stop="88339"/>
          <exon e_start="88705" e_stop="88979"/>
          <exon e_start="89290" e_stop="89981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTAACACAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTGGTAATTTTTGACTCTTCCTCCAATTTTTCATAGCTTGCAAAGTCTAGGTCAAAAAAAAAATCGAAACAGATTAAGCTTCGCGTTTGATCACAGTTTTTGGATCTGTTCCGCCATGGAATTTGAAAATCAGATCAAGTTCCTTAAAACAAGTTTTTCGACTTATAGCATAGCAACACAACTTCAAATCTCAAAAATCACAATTTCAAAAACTCATAGATTTCAACTTCTATATTCAAACAGGAGCTAAATTTCGAATTTTAAAAAATTATCTTCAAATATCCGTAAAAGTTAATCTTCGAACATTTTTAAGTTCCTAAAACTGTTTGGTTCTTTTTCTGAACTTTATTTTTTGTTGGTAATTGCAGAGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGGGTAAGTCCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGT--ATGTAAAAACAAATGAAAATTTGTTAATATCAAGTTATCAT</genome_strand>
        <mrna_strand>TGAAACTAACACAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTG.............................................................................................................................................................................................................................................................................................................................................................................AGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGG......................................................................................................................................................................................................................................................................................................................CTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATGTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAAAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCATATAGAAGGGCTTATTATTATTGTAAGGTACATGTAAAAACAAATGAAAATTTGTTAATATCAAGTTATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335952" ref_strand="+" ref_description="SGN-U335952        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: ANAC081 | no apical meristem (NAM) family protein, contains Pfam PF02365: No apical meristem (NAM) domain; | chr5:2858635-2860261 REVERSE | Aliases: ANAC081(evalue: 3e-62, score=235) genbank/nr: gi|40647397|gb|AAR88435.1| NAC domain protein [Lycopersicon esculentum](evalue: 2e-74, score=282)">
      <seq>tgaaactaacacaaagcaggagcagaagcagcaacaaacagagagagaagaaaacagaggaagataagaggaaaatttatcgaatcgagagaaaaggggaagtaaagttgcgaagagtgagaatttcaaaggaaatgaacaaaggagcaaacggaaatcagcaattggagttaccggcgggattcagattccatccgacagacgacgaattggtgcagcactatctctgcaggaaatgcgccggacagtcgattgcagtatcaattatagctgaaattgatctttacaagtttgatccatggcagttgcctgagaaggctttgtacggtgaaaaagagtggtattttttctcaccaagggatagaaaatatccgaacggttcacggccgaaccgagcagcaggaaccggttattggaaggcaaccggagctgataaaccggtgggaaaacccaaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="87724" stop="89149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88024" g_stop="88339" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88705" g_stop="88850" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="458" r_length="146" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-U335952" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88024" e_stop="88339"/>
          <exon e_start="88705" e_stop="88850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTAACACAAAGCAGGAGCAGGAGCAGCAACAAAC--AGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTGGTAATTTTTGACTCTTCCTCCAATTTTTCATAGCTTGCAAAGTCTAGGTCAAAAAAAAAATCGAAACAGATTAAGCTTCGCGTTTGATCACAGTTTTTGGATCTGTTCCGCCATGGAATTTGAAAATCAGATCAAGTTCCTTAAAACAAGTTTTTCGACTTATAGCATAGCAACACAACTTCAAATCTCAAAAATCACAATTTCAAAAACTCATAGATTTCAACTTCTATATTCAAACAGGAGCTAAATTTCGAATTTTAAAAAATTATCTTCAAATATCCGTAAAAGTTAATCTTCGAACATTTTTAAGTTCCTAAAACTGTTTGGTTCTTTTTCTGAACTTTATTTTTTGTTGGTAATTGCAGAGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACC</genome_strand>
        <mrna_strand>TGAAACTAACACAAAGCAGGAGCAGAAGCAGCAACAAACAGAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAAT-CG-A--GAGA-AAA-GGGGAAGTAAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCAGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTG.............................................................................................................................................................................................................................................................................................................................................................................AGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317099" ref_strand="+" ref_description="SGN-U317099        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: ANAC002 | no apical meristem (NAM) family protein, contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC domain protein NAM GB:AAD17313 GI:4325282 from (Arabidopsis thaliana) | chr1:268330-269819 FORWARD | Aliases: T1N6.12, T1N6_12, ANAC002(evalue: 5e-21, score=98.6) genbank/nr: gi|40647397|gb|AAR88435.1| NAC domain protein [Lycopersicon esculentum](evalue: 1e-73, score=279)">
      <seq>tccttcttcagctttaattttttattttcggagatgagattcaagattcgagtaatatagtatggtaaaattactgagtttacgtgaactatactcacatctctaatagtgatatctcctaagatttacaatgtttcaaatgaaaaatagtggaagatttcactttaattatcaacaattaggtgtggcacccatttaacatatagtaataagtaaaataaaatggtcattatattctgtaacttatgagtgcaaaatacaatttgtaaattgtttattgattatgtgatttgacattattgcagcttgatgattgggtattgtgtcgaatatacaacaagaaaggcacacttgagaagcattacaatgtggacaacaaggaaactacaagctttggagaatttgatgaagaaataaaaccaaaaatattgcccacacaattagcaccgatgccaccacggcctcgatcgacaccagcaaacgactacttttatttcgagtcatcagagtcgatgactagaatgcacacgacaaactcgagctctggctcagagcatgtcttgtcgccatgtgacaaggaggttcagagcgcgcccaaatgggacgaagaccacagaaacacccttgattttcagctaaactatttggatggtttactaaatgaaccatttgaaacccaaatgcagcagcaaatttgcaactttgaccagttcaacaatttccaagacatgttcctatacatgcaaaaaccttactaaaattgtataaattcattggatctaaattgagtgtgatccatgacattttctttgttctttggtggtgtaggtcaactttttattaagtagtttagagaagtacaaaatgctagtcaaatttggtgggctacagcacaaatgagccttgataagcatagccaaagagtcgtatagaagggcttattattattgtaaggtatgtaaaaacaaatgaaaatttgttaatatcaagttatcataaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="88685" stop="114134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88985" g_stop="89988" g_length="1004"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1004" r_length="1004" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89989" i_stop="90164" i_length="176">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.296" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90165" g_stop="90171" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1005" r_stop="1011" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90172" i_stop="90947" i_length="776">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90948" g_stop="90974" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1012" r_stop="1038" r_length="27" r_score="0.593"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-U317099" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1038</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88985" e_stop="89988"/>
          <exon e_start="90165" e_stop="90171"/>
          <exon e_start="90948" e_stop="90974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTAAAAACAAATGAAAATTTGTTAATATCAAGTTATCATTCTTCAAATCTCTGTGATTATGACTCTCCTACACTGGTTCAAATAGAAATTAGCATATTTAAGAGCTCAGGGTTCAGGGGCAAAGTTATCGACATCGATGTGTCTGATTCATGTAGGCATGAGAGCTAAAACTTTCTATTGTAAGATCCACAATAAGACAGTCGACTTGGGTGAAAACAATAGGAAAAAAGCCTAACAAATCATCAAGTTGAGTTGTTAACACTAAACAGTGACGAAGACTCTTTCCTACATACAACATAGATGAATGTAACAAATAACAAGGCAAAACATCTTTAACCTAGCAGTTAGTAAGATTTCGATTACCTCATATAAGAACTTCGCATCGTCCTTGATATAAAATTTAAAAGAGCAAGAAACGAAATGAAATTCCTTACGTAAGGAGGAGTGTGGCTGCGCCTCGTTTCATCATCATATGTTAGCAGACACTTATCCTTTCCAGCTTCCGCTACATACTAGTGAGTGCTGACTCCTCGGTAACTGTCAACGCACCTCCAAATGGACTGCAAGCCAGTATGTACCTGGAGTTTCTCCAAGTGTGTCCTTTAATTAAGTGTCAATCGCCTCCATATGTCGAACATTACATGATTGCAATATCATCCTAGTCTCGAGACAATCCAAACACTAACCTGTAAACTGTAATCAAGTTGCTGGTTATTGTCTCTCCTGTTGATTCTGTCTCTTTTAAATCAGGATGTCCTCCTCTACAACTGGGGAAGTGGAGCTTTGGGTTTCAGTTATGGGCCTCTTTGAACAGTTTGGATTCCTTTGGGGTCTTTGATCCAGTTTCACACTGTCTTTCCTATCTCTTTTTCACATTGAAGGACATAATGGATATGCAATTTGATATGTATGACTACCTTGCAAAACAAGACGTAACACTTTGAGTAGGGACTGAAATTATGTACGAGATATGTCTGTCTGCACTTGTTATACCATTTTCTGTAGTCGAAAGGAAGTAGACAACAACAAAAA</genome_strand>
        <mrna_strand>TCCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTAAAAACAAATGAAAATTTGTTAATATCAAGTTATCATAAAAAAA................................................................................................................................................................................GAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331303" ref_strand="+" ref_description="SGN-U331303        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G68550.2 | Symbol: None | encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. | chr1:25729118-25731049 REVERSE | Aliases: None (evalue: 1e-12, score=70.1) genbank/nr: DNA(evalue: 1e-10, score=70.1)">
      <seq>tcgactaacaaaactgctaatgctgctgccggttccactgatgctgatcatgggaaaaagccccttattcaggagatatctttcagtcacaaaagcatgttacttggagctgaatggcataacatggggaaattgagaaaaaaaacattcaagaaaaagcaggtatgcaaaggctttaactctaacatgcatgcatctaacaaaccaataaacgtcatgaatctagaatcttgtaaacaaacatcatgttcattgtctaaatcagctgataggtgtaatactatgaaaagaaatcctaaagctaagtcaggcttacttggaatccgaaagcaaaagaatgggagatatagtgctgaaattagagacccgattaagcataagcaagtatggttaggtactttcaacactattgaagaggcttcacaagcttatttatccaagaagtctgagtttgatatgttaactcagggatataaggaggataaaccaaataattgtgatcaaactaagcctgaatcatctgttggggcatcattgtctagtgggggtagaaataaaaaaatggattctcccaaacaacgcgtatcattggggttcgcaagaaccagtgggggaaatatacatctgagattataaaccccattagtaagaaaaagatttggttggggacttttggcacgtatgaagaggcttccctagcttatcaatctaagaagctagagtttcgggaaatagtcaaggcaaagaagaaatgtagtaagaaaattcatttaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="93091" stop="91714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92791" g_stop="92014" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-U331303" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92791" e_stop="92014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTAACAAAACTGCTAATGCTGCTGCCGGTTCCACTGATGCTGATCATGGGAAAAAGCCCCTTATTCAGGAGATATCTTTCAGTCACAAAAGCATGTTACTTGGAGCTGAATGGCATAACATGGGGAAATTGAGAAAAAAAACTTTCAAGAAAAAGCAGGTATGCAAAGGCTTTAACTCTAACATGCATGCATCTAACAAACCAATAAATGTCATGAATCTAGAATCTTGTAAACAAACATCATGTTCATTGTCTAAATCAGCTGATAGGTGTAATACTATGAAAAGAAATCCTAAAGCTAAGTCAGGCTTACTTGGAATCCGAAAGCAAAAGAATGGGAGATATAGTGCTGAAATTAGAGACCCGATTAAGCATAAGCAAGTATGGTTAGGTACTTTCAACACTATTGAAGAGGCTTCACAAGCTTATTTATCCAAGAAGTCTGAGTTTGATATGTTAACTCAGGGATATAAGGAGGATAAACCAAATAATTGTGATCAAACTAAGCCTGAATCATCTGTTGGGGCATCATTGTCTAGTGGGGGTAGAAATAAAAAAATGGATTCTCCCAAAACAACGCGTATCATTGGGGTTCGCAAGAACCAGTGGGGGAAATATACATCTGAGATTATAAACCCCATTAGTAAGAAAAAGATTTGGTTGGGGACTTTTGGCACGTATGAAGAGGCTTCCCTAGCTTATCAATCTAAGAAGCTAGAGTTTCGGGAAATAGTCAAGGCAAAGAAGAAATGTAGTAAGAAAATTCATTTAAATG</genome_strand>
        <mrna_strand>TCGACTAACAAAACTGCTAATGCTGCTGCCGGTTCCACTGATGCTGATCATGGGAAAAAGCCCCTTATTCAGGAGATATCTTTCAGTCACAAAAGCATGTTACTTGGAGCTGAATGGCATAACATGGGGAAATTGAGAAAAAAAACATTCAAGAAAAAGCAGGTATGCAAAGGCTTTAACTCTAACATGCATGCATCTAACAAACCAATAAACGTCATGAATCTAGAATCTTGTAAACAAACATCATGTTCATTGTCTAAATCAGCTGATAGGTGTAATACTATGAAAAGAAATCCTAAAGCTAAGTCAGGCTTACTTGGAATCCGAAAGCAAAAGAATGGGAGATATAGTGCTGAAATTAGAGACCCGATTAAGCATAAGCAAGTATGGTTAGGTACTTTCAACACTATTGAAGAGGCTTCACAAGCTTATTTATCCAAGAAGTCTGAGTTTGATATGTTAACTCAGGGATATAAGGAGGATAAACCAAATAATTGTGATCAAACTAAGCCTGAATCATCTGTTGGGGCATCATTGTCTAGTGGGGGTAGAAATAAAAAAATGGATTCTCCC-AAACAACGCGTATCATTGGGGTTCGCAAGAACCAGTGGGGGAAATATACATCTGAGATTATAAACCCCATTAGTAAGAAAAAGATTTGGTTGGGGACTTTTGGCACGTATGAAGAGGCTTCCCTAGCTTATCAATCTAAGAAGCTAGAGTTTCGGGAAATAGTCAAGGCAAAGAAGAAATGTAGTAAGAAAATTCATTTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="94678" stop="93619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94378" g_stop="93919" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94378" e_stop="93919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATGAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTAAAATTTCATAC</genome_strand>
        <mrna_strand>TTATTGTAGATGACCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATGAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTAAAATTTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331576" ref_strand="+" ref_description="SGN-U331576        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5430178-5435916 REVERSE | Aliases: F7H2.12, F7H2_12(evalue: 4e-06, score=48.5) genbank/nr: gi|24461867|gb|AAN62354.1| CTV.22 [Poncirus trifoliata](evalue: 8e-09, score=63.5)">
      <seq>cggagaagcctccggagcttatttagattttgtaactcagacgcgaaatggcgatgcagctgattggcaagaagaggtttaccaacagtgaaaatttcatcattgtggtgcctccaaatgagtttgtctgagtctggcagactgcacaaagcaacagcagactgcgcaactgccagcccacaagatgtcacagcttcaccagctaactgatgctaatgacctaatgatgaggcagcaaatgggaatgaaaacaggagttttacagcaacagcagtcagttggatttcatcatccgcaagtgaagccggaaatatcttcagctcaaacctatcaggcagtatctcctcaggaacaaaacctacctgctttggatgaaagcaagaacggtgcaaatgtgtcctggaattttcaatgaagcttttcccaataaatgaggtgcgtgaagctctcatgaggtttcataagtcgcaggctcttcaagagcacatttacttatttctcaagctcaaatgggaaatgcaaatggagctaattggaagaaagaggtttaccaaaagattaagcctacgaaggagatgtatctattagagctcaagtatttatacctaaagattgcttctaaagtctggcaggtaccaaacgaccccttaaagctaaatccattctacacatataaaactcttctaatctatctcangtcagaaattgagatggattggtataattggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="98428" stop="107326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98732" g_stop="98802" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="88" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98803" i_stop="100155" i_length="1353">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.503" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100156" g_stop="100416" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="349" r_length="261" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100417" i_stop="100624" i_length="208">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100625" g_stop="100710" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="435" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100711" i_stop="102162" i_length="1452">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102163" g_stop="102221" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="494" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102222" i_stop="105811" i_length="3590">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105812" g_stop="105874" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="557" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105875" i_stop="106008" i_length="134">
            <donor d_prob="0.504" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106009" g_stop="106083" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="632" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="106084" i_stop="106848" i_length="765">
            <donor d_prob="0.488" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="106849" g_stop="106913" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="697" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="106914" i_stop="106993" i_length="80">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.655" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="106994" g_stop="107026" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="730" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-U331576" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98732" e_stop="98802"/>
          <exon e_start="100156" e_stop="100416"/>
          <exon e_start="100625" e_stop="100710"/>
          <exon e_start="102163" e_stop="102221"/>
          <exon e_start="105812" e_stop="105874"/>
          <exon e_start="106009" e_stop="106083"/>
          <exon e_start="106849" e_stop="106913"/>
          <exon e_start="106994" e_stop="107026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTAGATTTTGTAACTCAGACGCGAAATGGCGATGCAGCTGATTGGCAAGAAGAGGTTTACCAACAGGTATTGTCTGCAATGATGTTTTTATTTACGCGAGATTTTGAAAATTGAGGAAATTACATATGTGAATTTTGATTAATTGCCTCGTTATAACATTATTATATATAGCTGAATCTTGTGAAATATTTCCTATATGATAAAATAGAGTAATAGAGGAGGTTTACCATATTGAGTGTTTACTACTAAATTTGTGGTCATACCCTTCCCTGCAAGGTGCTTTATGTATCCCATTTTTAGAGGAGATAGAAAATTGAGCCTGTTACTTGGTAATTTGTTAGAAATTCGTATATTCTCAATTGAGAACTACTTGTACAACTATGCCTCAGTCCCAAGAAAGTTGAGGTCTGTGCTATACCCTCCCTGCTAGGTGCTTTATGTATTCCATTTTCTTTAAAGGAAATAGGAAATTGAGCCTGTTACTAGGTAATTTGTTAGAAATTGGTATATTCTCAATTAAGAATTACTGTTACAACGGTATAGCTATGCCTCAATCCTAATAAAGTTGAGATCCACTATATAAATTCTCACTATTGATAGCCCATTGTTTAACTTTGTCTTGGTCCTTTTATCCTATATTGTCAATGAAAAAAAATAGTTTCACAAGCACCGACATAATTGAGAAGTGAAATATTGTTTGATAAATTTATTGATTATAGAAAATTAGTTTTTGAATGTTGTGATCGTATTATCTAAATTCATGAGGTAAATGTATGTAAGTTCGAGTCGAAGTTTTTTTTTTTTTTTTTTTGAAATTGGTAAATTGTATCCCTTCAGCATTAAGGTTATGCTGGCCACCTCCGAAAAATTTACAAAAAAGAGATAGAAAAAACATATAAAATCCACTAGTTGGATTTCCTCTTCTATACTCTGTTCTTTACACCAGAAACCAAGTGAAGTAACAACTTTCCACTTAATCTTCAAAATAGAGGTCTTTTCCTTCGAAGATCCTCTGGTTCCTCTCCTTCCAAATGGTCCACCAGATGCAGGCTGGGACTGTCATCCACCATATTTTTTGGCTTTTGCTTCCTCCTCTTCTGATCCAGCAGCTAAGCAAGTCCGCAGTATGTTTAGGCATGATCCAGTTGATTCCAGCAATGGCGGCGAACATATTCCAAACTTGTGTCGTTACTTTGCAATGCATGAAAAGGTGTTTGTTGGTTTCTAGTGCCTCCTCGCAGAGGAGGCATCTAGATGCTATGATGGACCCCCTTTTTTGCAGTGCCTCATGTGTCAAGCATGCTTTCCTAGCTAATAGCCAAGTGAAGCATTTCACTTTATTAGGAGCCACACTTTTCCAAGGTCCAGTTGACCTGCCTCCAGCAACACTCAATTCCCTTTTGTATACTCTGTTAACAGTGAAAATTTCATCATTGTGGTGCCTCCAAATGAGTTTGTCTGAGTCTGGCAGACTGCACAAAGCAACAGCAGACTGCGCAACTGCCAGCCCACAAGATGTCACAGCTTCACCAGCTAACTGATGCTAATGACCTAATGATGAGGCAGCAAATGGGAATGAAAACAGGAGTTTTACAGCAACAGCAGTCAGTTGGATTTCATCATCCGCAAGTGAAGTCGGAAATATCTTCAGCTCAAACCTATCAGGCAGTATCTCCTCAGGTATGTCGTCAACATTTTATGGATTGTGTATAACTAAACTTGACGAGTGTTTATAGCATGTTTAGGAGAAAAGGCTTAAAATAATCTATTATCTATGGACTAAGCTCAAAATGATCCTATTTCTTTCATATGGAGCACTAATAGTCCCTTTTCTTTGATAAATGGTGCACTTTTAGTCCTAACTTTAACACCCTTAATCTTTTAATAGGAACAAAACCTACCTGCTTTGGATGAAAGCAAGAACGGTGCAAATGTGTCCTGGAATTTTCAATGAAGCTTTTCCCAATAAATGAGGTAATCATTTTGTTCTTGTTCGATCTTTATATATCTGTCCTTTTAAATGACTTCTACTGAAAGAGAGAACAAGAACTTGACAACCATGACAAGCTCTTGTCCATTGATTTTTAGAAACTGGAATAAGTCCCAAGTGTGAGAAACGGAGAGGACGAAATAGTGTAAGCAAGGAATAGGTGTTTAATATTTATTTTATATACTTTCAGTCTTTGTTTGCTAGAGTAAATTACATCAAAGAAAGAGAATTCTGACTAGTAAAAAGTTTCACGATGAATAGGATTATTACCCACCACTTAAACAAAGACTAAGAATTATTAGTGTTCCTGGAAAAGAAATAGGATAATTTTAAGCCTGTCCAAGGATAGTGGACTATTTTGAGCCTTTACTCTCATGTTGAGGAATAGATGAGGAGAGATTAGAGAAATATTGAGGCTTATTTAAGAAGGACGAGACATTGTTGGCTGATATTTAAAAAAAATTGACTTATTCGGTGAATATGCAAAATGTTGAAGTTTCTATGGACATAAGATGTCTAGCTAAGTTCGTGAACTCCTCGTGGACATGTGATGATTGACCAAAGAAGAAACACATTTGGTACTTATCCTAATTTCATGCAACAATGGTTTATGTTAGTCAAATGTAGTGTTCGAAGACTAGTTTTATACGAAACTGAACACAACCCTAAATTCAATGAACAAGCTTTAAAAATTAATTTAATTGTTCTTGAACAAACAATGCTTCATGGATTCTTTATACTCAAAAGAATTTTTTCATTGACCAAGCAAGAGAATCTAAAATATAATATGATTTTTGACAGATAAAAGTTGTTTATTAGACCTATAAAGTTGCCTTCGATTTCAACATTATGAGCATTACCAATGTATTATTTTCATGCATCATCACAAAACTTTGAAAGTGATAGTTGATGTGTTCAGGAAAGTGAACATTGGTTTATTTATGTCGTCAACATAAACAAGAAGTACAAGAAATCTCGATGCTGTTTTCTTTATAAAAAAATATAAATAAGAAAAGTCACTATTATATTCTTCGTCGTATGAATATTCACTAAGGTGATTAAGTCACATCCACCTTATTTGATGTTCTCTATAAGGATTATGAGTTTATAGAAACTTGTAAATGCTTCAAGCATTTTGAGTCCTTCGGGAAGTTTCTTTTGATTTTGTCAAGTGACAATATCTGGTATTAAATGTCCGATCCTCTGATGCATCGATTGTTGGTCCAATAAGGTTACACTTATCAAGATGCATGTCATTTCACTTGATAAACATTTCTACACCGGTATGCTTAAATAAACATATAATTTAGATCCTCACATTCTGTTACAATATTATGGGCTATATTGTATCAAATATATCGTCATTGAGTTATCATTTTGTATCAGTTCGAAGTGCGACGTAACTTACTAAGATCTCATTACTTCATTATTTACAGGTGCGTGAAGCTCTCATGAGGTTTCATAAGTCGCAGGCTCTTCAAGAGCACATTTACTTGTTAGTATGATCATTTTCTGTTTTCCCTTTCTAAGGATTATTTCAATTGGAATTGTCTGGTCTATCATGTTTCATGCATGCCATAGACTCTTTCCTTCTAGGACATTTAACATGAGCATTTGCAACTGATATGTGGGATTGATTTTGGGTTAGCAAATGCTTAAAGCATTTGACTTGAATGGTCTTTTGAATGAAAACCGTACCGATAATAAATTTTTCTTGACAACTTGTTATTTTCCCCTTATGTTAGAAAAACTTAACATATATCCCAATTTAATTGGGTGAATCTATCTTTGTGCATCATAGTATATTTTTTCTTCATATATTGCGCATCAAAAGCTATCAGGCGGAATATATTTAGTTCCTGACCCTAAACCAATCAAGAGTTGGCAAATTAGGGGGTGACTGAATGGTCAATGGTTGGGGAGATTGGGTGGGTGGAAGGAGACAATTAACTTAGAATGTCTCTTATGCAACTTGTTTGGCCTACTTTCATTATGGAAGTCATTTTCCTCATTTTTAAGGAACTTGTTTTCCTATAGACTATTTTCGGAACATTTTGACCAACCAAATATAAGAAAATTGAAAAACATTTTCTAGAAAAATGTTTTCCTCTATACCAAGCACACCCTTAGTCATAATTTGTAGGTCTGATGCATTGAAGTGTTGTTGTATACAATATATCCTATCATAGACCGACACAGAGTTTTGTTCTCATAAGCAATGGTTCAATTATTTATTGAAGGTATTCAATGTCAAACTAGCTCGAATATAAATTAGATTTATCAAGATGAATTGTCTTGATTACACAATCTGAAAACTATGCTTTTAACTCAAACATACACCTTTGTGAATGCCAAAATGCATGTCGACAATAAATGCACATGGTAATCATCTTATAGATGCATCTATTTAAAATATCACATGAGACGTGAATATGCTCACTTTCACTTCTTATCTTTTCCAGGATTTAGGGTATTCATTTCAAATATTAGTTAGTTTAATCAACTTATCATGAGAACGTACAACATAAAAGAATTTTTGAAGAATGTTCTATTTGTTCGATATATGTTGAATACTTAATATGTATATCTTTAGAATTCGAGAACCATATGATTACCATCTATATTTTTTTTTATTTAAGTGTTTTGTATAGTCGCACTTCCATCAAGAAAATATATGAATTGTTATTTTCTTCAAGGAATTAATAAAACATTACCGTAGAAATCATTCAACAAGATACATTTCCTTCTTCCTTAAAATGATATTTTTAAAAACGTAGACACACGTGTCATATTGCAATGACTTCTATACCACAAAAACATGTATATCCTTTTTATTCTATCTCTTCATGAGAAGTTGTGGTGTCTCTTTCATCCACTTCGGGGAATGAAATCTGATTATTTGAATGTGCTTGAAATACCAACCCCCTCGACCTATTTTCAAACTTTAAATAGATAGGACGTCAATTGCTTTGTTGAGCCGCACATGGAATCAAGAGCTCCAAGTGGGCCATTTTTAGTAAGCTAAAGTGGCAATGCGGGATGAACCAAAAGTCGGGTTACGATGCCAAACTGCGCGTTAACCTAGATCCCTCAAAGGGTCTTGGTCGATTAAGACATTAGATCATTATTTTCCTTAAGTAGACGACATTGCTTAAGAGTATTTCTCATATATTTTTCAAACTTTTTTTGCTTTAGGAGAAAATTTAGAAGTTTACTCCTTGGAGAATGTAATTTTAAAATTTTACCACTTCTGGAGTAAATTTCGAAGTTGTACTACTTCGGGAGTAAAGTTCAAAGGTCTGTTACTTCGAGAGTAGATGCCTGATTCTTGTTACTTTGGGACTTAGTTGCAAAGTGTTTACTATTTTGGGATTGATTTTTAGGTTTGTCATACCCCAAACTACCTCCCAGACGTGATTGACACCTAGCACACACCATCGGCCATGTGAACCCAATTACCATACCTTCACCATTAATTCATAACGTTTGATGAATTAAATAAGTATTCAAACAATATGATATATAATTATGAACTCTTGGTATCTCAAAATGTGAATCTAACACTCTTGTGCAAATCCCACGCTAAACCAAGGAGCATCAAAAGGAATCTCAAAAGGACTTGGAATATTAATGATAATGACTCTTTTGAAATCCCCCACAAATAATGCAGTTGTTCACCTCAACAATTAGATCAACCTCGACGACCATTTATTTTGCCAAGCACATGTTCGTCACAACTCAAGCAGACAAAACACATTTTGAAAATGGATTTGAAAATCAAGCACACAAAGCTTAAACTCACTTACCTCAAATTCACAACTCAATCATTCTTTCCATTAGATCATAACTACGATCTCGAGACTCCGGATCACCTCAAACTAACACAAAATGGGTTAAGAATGGTTAGGAACCCTTCGTTGGATGTTTTCTTAATTTTATCACAAGTCAAATTTGTGTTTAAAGATTAACCCAAAAAGTCAACTCGGATTAATGAGTTAGAATTCAAAACCAATAATATTTTGAGCTAGCCATACCTCGTTGGATCCAAGTTTATAATCGAGTTTCAACCCTTGTTGTCAGAATGATGGATCAATTTCCAATTTCATTAACTTTCAAGCTTAGATCTTAATCGTAACTTTATACCTCAAACATATCTCAATATCATCATTGCTTAATTAGTGAATATTATGTCTAATATAAATTATCCGTGTCCCCGAAATAATAATCAAAATGTGTATAAACACAATGCTGAAACAATAGAACTGCATAGCCAACACCTATGGCTTAACCCCTATTTCTCAAAATAATGTTTAATCTCATAATTATTTTCCATATGATATCATCCATCCTAATCATTGCAATATCACGTAGTACTTGAAGCTTTTCTTTTAAATGTGTGAAGGACTATGTTGTTGTTCGCTTGTACTTCCTACTTCTAGTTCCTTTAAGAAACTTGTAATTTTAAGGCTTTGTCCAATAACTGCAAATTAAATTAGTTCTCCAATCTTTCCATAATAAGTACTCATAAAAATTAATTGTTTGGTTATTGCAGTTTTACTACTTTGTAATAAATTTTAGATTTATTACTTTGAGGTTAAATTTAAGATATTTCTTTTTAATTTTTCTACTTCTTCTAGAACACAACCAACATTCTTTTATTAGTGTGACAATAATCATCATCATCGTGCATAAAAGATAATCAAGCTATGCATGAACCAAAGTATTCATATTATTAAATCATCCCACTCATCCATAGATTTCAAATAATGAAATCTTCGATTCACAATATTTATCCAAGATGGCTGAGTCTCTTGCTAATAATGCGTAATAGATATAAAGCAAAAGGAAGAAAATACAGGAGAAACGTAGAGAGATGGGAGAAAGCTTTTTATTTCTCTTGATGTATAAAATACAATGAATGAGAACTCCTTTATTTACAAGGGAAAACTAATTCGATCTCAAAGTAACTAACTCGCAACTATTCTATTAATGTCCCAAAATTTGCCTGAAATTTGAATTATGTAAGCACTCAACTTCTTTAATATTTTTGTTATCCTCAATTTTGTTTATTCGTAACACCTTTAGATTTCTCAAGCTCAAATGGGAAATGCAAATGGAGCTAATTGGAAGAAAGAGGTTTACCAAAAGGTTTTGTTTGCAATGGTATTTTTATTTGCGCAAGATTTTAATAACTGAGGATATTACATACGACTTGCTGAAAATTGATTTTTTTTGCATTAGTTATGATGTGGAATTTGTTTTAATGAATTTTTTTAATGCAGATTAAGCCTACGAAGGAGATGTATCTATTAGAGCTCAAGTATTTATACCTAAAGATTGCTTCTAAAGTCTGGCAGGTTTGTTTTTAGCTAAATTTGCAGATCCCAAGCGAACCATAGTCCTTGATATAATTGTTACTGCATTTTGAGTCTTAACTCTTCTCTTTTACTTCCTTTAATCATCATAATGTCCCACTTATTGATGCTCTCGGATGACTTCTTAGGACATGTCTATACCTTCTTAGGTGATAGAGCCATCTTATACGGCGTCTCATTTTAACGTTTGTGTTCCCTTCACTGAAAGGGATCAAGGCCTCCCTAATTCTTTGGGGCTTGGGCTTTATATATATGACTTTTAAAAAGCACTCATAACAACATTTTGTTGAAACATAGAATGCTGGTTAGTTTGTTTTCTTTTGCTTTTTTTTTTTCTTTGTTTTATTTGATGGTTGAAGGTAACGTATGTTTTCAGTTTTACTATGTTATTTGTCTCTTAATGCCTTTTCTCGAGTTTTCCGGCCTTTTTCTTGGCATGTGAGGGGTACTAAGGGGTCGTTTGATAATTGGTTAAAGTTATGCACATCTTAGTAATGTAGGCTTTAGTTATGAGTGAAACTATGTATTTTATTTTATGTAGATATTCGTTATGTAGAAATTGGTTATTCATGTATTAGTTATTCCACCTTTTACCTTACATAAAATATTATATAGATTCCCAGTAATTATAGATTGTCAAGGAAACGTCGTATTAATTTTATACATGAATTACTTATTTCCTATCTATCTACCAAACATCGTATAAGTTATGTGGAAATTAACGTGGATAACTTGTTTCTTATGCAGGTACCAAACGACCCCTTAAAGCTAAATCCATTCTACACATATAAAACTCTTCTAATCTATCTCAGGTTCTATAGTTCTCTTTCAAAACTCAGTTACATAATTTTTTTTTATTTTCTTTGGATTGTGAAGAAAGGATTTTGATTAGGTCAGAAATTGAGATGGATTGGTATAATTGGAT</genome_strand>
        <mrna_strand>CTTATTTAGATTTTGTAACTCAGACGCGAAATGGCGATGCAGCTGATTGGCAAGAAGAGGTTTACCAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAATTTCATCATTGTGGTGCCTCCAAATGAGTTTGTCTGAGTCTGGCAGACTGCACAAAGCAACAGCAGACTGCGCAACTGCCAGCCCACAAGATGTCACAGCTTCACCAGCTAACTGATGCTAATGACCTAATGATGAGGCAGCAAATGGGAATGAAAACAGGAGTTTTACAGCAACAGCAGTCAGTTGGATTTCATCATCCGCAAGTGAAGCCGGAAATATCTTCAGCTCAAACCTATCAGGCAGTATCTCCTCAG................................................................................................................................................................................................................GAACAAAACCTACCTGCTTTGGATGAAAGCAAGAACGGTGCAAATGTGTCCTGGAATTTTCAATGAAGCTTTTCCCAATAAATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGAAGCTCTCATGAGGTTTCATAAGTCGCAGGCTCTTCAAGAGCACATTTACTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTCAAGCTCAAATGGGAAATGCAAATGGAGCTAATTGGAAGAAAGAGGTTTACCAAAAG......................................................................................................................................ATTAAGCCTACGAAGGAGATGTATCTATTAGAGCTCAAGTATTTATACCTAAAGATTGCTTCTAAAGTCTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAACGACCCCTTAAAGCTAAATCCATTCTACACATATAAAACTCTTCTAATCTATCTCAN................................................................................GTCAGAAATTGAGATGGATTGGTATAATTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345914" ref_strand="+" ref_description="SGN-U345914        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5430178-5435916 REVERSE | Aliases: F7H2.12, F7H2_12(evalue: 5e-32, score=135) genbank/nr: gi|24461867|gb|AAN62354.1| CTV.22 [Poncirus trifoliata](evalue: 2e-34, score=149)">
      <seq>ctgctagtagtggtcagaatgcccttggtccaggatcgcacagtatgcaatcccaagtcaacagccaagcacagcaacttcctgtacctatggtggccaatcaaactcaaacacgacaaccactgttgcagcaaaaccttcagaacaatatggcatcgactgggctgcaaaattctgctagcttggctccttcacttccttctgtgagtaatttgacgcagggtaccatgccaaatgtcgtgggccagaattcaaatttgcaaaccatgcaaaacatgccaaatgttggtcaaaacttggtaggaaatgccattgggcaaggcatgcctcctaatatggttgctaattctcagaggcagatgcagggaagacaacaacaggttgcttctgcacctgcccaatcccttgcaattggtactcctgggatatcagcctcacctttgcttgctgagtttactcctctagatggtacacatgccaatgtctcagctgctgttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="150014" stop="156114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150314" g_stop="150346" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150347" i_stop="150819" i_length="473">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150820" g_stop="151166" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="380" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="151167" i_stop="155693" i_length="4527">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155694" g_stop="155814" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="501" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-U345914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150314" e_stop="150346"/>
          <exon e_start="150820" e_stop="151166"/>
          <exon e_start="155694" e_stop="155814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTAGTAGTGGTCAGAATGCCCTTGGTCCAGGTGAACAATGAAATCTCATGTGCTCTATTTCAAATAGGGAAAACTTGTATGACAGGACGTTTTGTGTAAACCTAATTACTTCGTTCTGCTGTTGAAAAGTTTGTTCTCTGTAGCTAATAAGTGTAAAGGAAATTTTAGATGCTTGAACCATTGTGCTAATCTTTGAGTGATCTATAATTTTGGTGACTAGCCCTAATAAGTATTGTTTGTGCTCTAGGTCAGAGTCCTAGCCCTGCTCTTTCTCTATATCCAGACTATTCTTGTTGTTTATTTGTCTAATAAGTAACTTAGTCAAATTTCTCTTTTGTATTTTCGAATCAGTTTTCACAAAGCTATGACTTCTGTTTCTTGTATCTTAAACTAAAAAATACGTGTTTACTTTTGCTGCTTGTTTGTATTTTATTTTAATGTTATTATGTTTGCTGGTTATTTGATAGCATCTTGACTGGCTTCTTTTTTATTCATTTCTGTAGGATCGCACAGTATGCAATCCCAAGTCAACAGCCAAGCACAGCAACTTCCTGTACCTATGGTGGCCAATCAAACTCAAACACGACAACCACTGTTGCAGCAAAACCTTCAGAACAATATGGCATCGACTGGGCTGCAAAATTCTGCTAGCTTGGCTCCTTCACTTCCTTCTGTGAGTAATTTGACGCAGGGTACCATGCCAAATGTCGTGGGCCAGAATTCAAATTTGCAAACCATGCAAAACATGCCAAATGTTGGTCAAAACTTGGTAGGAAATGCCATTGGGCAAGGCATGCCTCCTAATATGGTTGCTAATTCTCAGAGGCAGATGCAGGGAAGACAACAACAGGTTGTTTCTCAACAGCAACAGCAGCAGTCCCAGACAACACAGCAATATATGTACCAGCAGCAACTGCATCAGCATCAAATGATGAAGCAGAAATTTCAGCCGGGAAGCACATCACAGTCCTTGATGCAATCTCACATGCAGCAACAGCAGCAGCCGCAGGAGCAGCAGCAACAACTACCGCAGCAGCAACAAAACCTTCTACAACCTACTCAGACACAACCTTCTCAGCAAGCTATGATGCAACCTTCTTCAATACAATCAACTTCTTTGTCCAACCTTCAGCAGAGTCAACAGTCGACTGTTCAACAGTCAACTCAATCTGTACTTCACCAACGGCAACAATCAGTTATGAGACAGCAGCAGGCTCCCATGCTTCATCAACAGCAATCGTCAATGCTACAGCCACCAATTTTACCAGCTCAACAGCACCAACAACAACAACAACAGCAGCAGCTGATTGCACAACAGACAAATGTTGCAAATCTCCAGCAGAACCAATTGATGAGTCAACAGAATGCAATGCCTGATGTGCAGCAGAGGCTAGTGGGCCAACAGAACAACTATATGCATCAGCAAAACAACTTTCAAAATATGCATCAGCAGCAGTTGGGCTCTCAAAGTAGTATTGCTGGGGTCCAGCAACAACAGCTGTCTGGAAGTCAACAACCTGGTAACTCTGGCTTGACATCTAATCAGCACCCTATTCATTTGATGCAACAACCAAAAGTTCCTGTACAACAACAAATGCTGCAGAGTACTACAACCTTGTTACCAAATCAAGGTCAACAATCGCAGTCGCAGCCAGCACAACAGCAAATGATGTCTCAAAGTCAATCACAACCAGGACAGTTACAGCCACCTTTGGGTTTGCAGCAACAGGCGAATCAATTGCAAAGGGAGATGCAACAGAGGCTTCAACCATCAGCCCCCTTGCTTCAACAGCAAAATGTAATGGAACAGCAGAAGCAGCTATATCAATCACAAAGAGTCGCACCTGAAGCCTCTTCAAGTATGTATTTTTCTTAATCAAAGCTTTCAATTAGGTCTCATAAATCACTCTGTAGCAGTTTGTCATTCTTAGATATTTCCACCTTTCATGCCTTATATGTGTGAAGGTATAGGACTTCTACACTATGTTAACCACTGGTTTACATTTTCTTTATGTAAAAATGACTAGTACTTTCAGGCAAGTTTTGGGATATGAAAGGTGGTGGATATTTTAGATAATATTCATACTTATCTGAAATATCCAACACCTTTCATATCCCAAAATTTGCCTGAAATTTTAATGCTGTAAGGTGTCAAGTCCTTCAATATTTTTGTGCTATCCTTAACTTTTGGTTTATTTGTAGCATCTTTAGATTCTACAGCTCAGACGGGAAATGCAAATGCAGCTGATTGGCAGGAGGAGGTTTACCAAAAGGTATTGTTTTCGATGGTATTTCTATCTGCACGGCATGTTGAGAACTGAGGAAATTACTGGAAATTGTTGTTTTGGAAATTGACAAGTGAACTGTATTTTGATAAATTGACTGGTTGCAACAATATAAGAAGTAGCTGAATGCTGTGAAATATTTTTTGTGATTGATGGATTAATAGAGGAGGTTTATCAAAATAAGTATTCAGCAAATTCATGGTCATATCCATTCCCGCAAAGCACTTTTACGGTGTTCCAATTCGTAGAAGCACTATAGAATTAAGGTTATTGCAGCTTACTTGTAAGAAATTGATTTATTCTCAATTGAGAAGTGAGGTACAACAACTATTACGCCTCAATGTTAATCAAATTAGCGTCTGTTATATGAATTATTGTTGTCTTATGTTGCTTCATTTGAGCCCCTCTCAATCCAAAATTATAGCACTTGAATTTCCTTACACTTTCTACTGGCATAATTGGGAAGTGAAGTAAATAAATTGGTTGGTTACATTTATTTTTTGATGAAGTGATTAGAAATAGTTGAATGTTGTTATGTATTGTCTGAATTCACGAGGTGTGATATGTCCGTAAGTTTGGGTCAGGGTCCTCATAATATGTACCTAATTTGTTTTATTCCATGGAAACTAAAGAATTAATTGCTACATTAAAGGGTAAAACTATTCATGCAGGAAGTATATACTTGAATATATGGCTTAAGAAAATATTGTTCTTTGTGAAAAGGCACATCATCTGTATTAGTTGGTAACGGTTTTTGTTTCTGTTTTTTGGGATATCACGAGAAATTCATTGTTGCCTGTTTTGGAATGTGGATGATAATGGGTCTGTCCCTCTAGCTTTTTGTACTTAAATACCTGACTTGGTTTACTAGCTAGAAGTGTAAGTTGGAATATTTTGTGTTCGCCAAGAATAAAGATATAACATCAACATGCCTTTTTACTTGTGAAGTAAACTACATTGTTGTTATTCATTGTTTACCCTCATTTTGCTTTACTGGTAATAAAGGTGTAAAGTGAAAAAAAATGATGTTTTCACACTAAACAATATTATATCTCCCAGACAATTATAGAAAAGTATATTCTAATTCCTCCTGGTTGGGCTGGTCTATTATCACATCTTGGAACTAGACCCTTGCTGTGAGCACCGAGCAGAAACGTGTACCAAGAAGCTGAAGGAAGCAAAGTTCAGTTGTTTATTTTTTCATTCACATGTTGAATCATGCAAAATGGATTCTTTAATGAGTTTTAGTCTTCCGCTTCCACTTCACTTTTAACTTTTTATCTGGAAGGTTCTTTCATGAGGATTCTCTAGTTTGTTCTCTACTGTATCGGAAAGTTGATCTAATTATTACCTCTCCATATGGGAATGCAGTCTTGACATTTGCGCAATTCTGAGCTGATGCAAATTTTTAATGCAGATAAAGTCTATGAAGGAGTCGTACTTAGCAGAGCTCAATGATCTATACCACAAAATTGCTTCTAAAGTGCAACAGGTATGTCATCAACATTTTAATCCATTCTTATCATTTTTGGAGCAATTCTACTAGCTATGTATGGTGCAGCATGTTTGCCTGTGTTGAAGCGTTGTGTATGATTGTAAAGTAGAGGTGGAGGACACCATAAAATGAGCTATTTACACATATCTAGGTGAATACTGTGATGTAGATGCCACTTTTATGTTCCCTTGGGGAAGGGTTCAAGGCCTCCCTAATTCTTCGGGCAAGGGCTTGATTTGTCTAAATTTTAAGAGCGCTTAAGTCAGCATTCTGTTGAATTGGGCACCTGGCCACTATGTTATTTGTCTCTTTATGTTGGTTTTAAGTTTTTCTCCCTTTTTCTTTGCTGTGGGAGGGAGGTGTACTTGAAGCATGAATTTTAAAAGTTTGCAAAGGGCAAGAAACAAGACTTTGACTAAACTGATTTTTTTTTCCTGATTTTAAGCATGATTCTCTTCCTCAGCGTCCTCAAAATGAGCAAATTGAAAAGCTCAAGATGTTCAAGATCACGCTGGAACGCATTGTGCTTTTCTTGCGGCTTAACAAGCAGGATATTCAACTTTCTCACAAGGAAAAGTTGGCTTCGGTTGAGAAGCACATAAGTTTCTTTCTTAGTTCCAATAGGCCGCGCAGCAAGCCTTCTTCTTCTCCACTGCAGGGACAACTTCCTCAGTCTTCCATGCAGCTTCAGCAACCACCATCTCTTGATGGTCAATCTAATCCGTCGATGCAACCCTCACAGGGTTCCATGGCAGCAATGCCTCAGAATAATCTCACCAACTTGCAACATAATACCTTGTCTGGTGTACCGACAATTTCCAACTCCCAGCAGCACATGATAAATACAGTACAGCCTGGTTCCACTGTGGATTTGGGACAGGGTAATTCATTGAACTCACTGCAGCAGGTGGCTACTGGCTCTTTACAACAGAATCCTGTTAACAGTCCTCAACAAGTTAACATGAGCTCATTAAGCTCACAAAGTGGAACAAACCCCGTACAGGCAAACCTCGGTTCCCTACAGCAAAATTCAAACGCCCTGCAACAGTCACTTCCTAAGCAGCACGAGCAGCAAATGTTGCAGAACCAGCAATTAAGACAGCAATACCACCATAGGCATATGCAGCAGCAACTTTTTCAAAGACAGCAGATAATACAACAGCAGCAAGCGAAGCAACAGCAGACCACGCTGTTGCCAACCCACCAGATGTCTCAGCTTCAACAGATGACTGATGCTAATGACCTAAAGATAAGGCAGCAAATGGGGATAAAACCAGGAGTTTTACAGCAACAGTCAGTTGGCCAGCGTGTTGGATCTCATCATCCCCAATTGAAGCCAGGAATATCTTCACCTCAACTCCATCAAGCACTGTCTCCTCAGGTTACCCAACATCCTTCTCCACAAATTGACCAACAAAATATGTTGGCGTCTCTTACAAAAGCTGGGACTCCTCTCCAATCCGCAAGCTCACCGTTTGTTGTCCCTTCTCCTTCAACTCCCTTGGCTCCATCTCCAATGCCGGGAGATTCTGAAAAAGTTGGTGCTGGCCTTGGATCACATACCACTGCTGGAAATATAATGCATCAGCAAGCTACTGTTGCTTCTGCACCTGCCCAATCCCTTGCAATTGGTACTCCTGGGATATCAGCCTCACCTTTGCTTGCTGAGTTTACTCCTCTAGATGGTACACATGCCAATGTCTCAGCTGCTGTTCCTG</genome_strand>
        <mrna_strand>CTGCTAGTAGTGGTCAGAATGCCCTTGGTCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGCACAGTATGCAATCCCAAGTCAACAGCCAAGCACAGCAACTTCCTGTACCTATGGTGGCCAATCAAACTCAAACACGACAACCACTGTTGCAGCAAAACCTTCAGAACAATATGGCATCGACTGGGCTGCAAAATTCTGCTAGCTTGGCTCCTTCACTTCCTTCTGTGAGTAATTTGACGCAGGGTACCATGCCAAATGTCGTGGGCCAGAATTCAAATTTGCAAACCATGCAAAACATGCCAAATGTTGGTCAAAACTTGGTAGGAAATGCCATTGGGCAAGGCATGCCTCCTAATATGGTTGCTAATTCTCAGAGGCAGATGCAGGGAAGACAACAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCTGCACCTGCCCAATCCCTTGCAATTGGTACTCCTGGGATATCAGCCTCACCTTTGCTTGCTGAGTTTACTCCTCTAGATGGTACACATGCCAATGTCTCAGCTGCTGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331724" ref_strand="+" ref_description="SGN-U331724        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5430178-5435916 REVERSE | Aliases: F7H2.12, F7H2_12(evalue: 7e-87, score=317) genbank/nr: gi|24461867|gb|AAN62354.1| CTV.22 [Poncirus trifoliata](evalue: 1e-101, score=372)">
      <seq>cgtcagttcaagacatctattcagttgtcagtatgaatgatagaatagcaggatctgctccaggaaatgggtcaagagcagctgttggcgaagatttggttgccatgaccaaatgtcgtctccaagcgagaaactactttacgcaggatggacctacaggaacaaagaaaatgaagcgatatacaacttccaacgttgtgtcgtcaagcagcagtttgaatgatagtttctggcaggtgaattattctgaaacacctgagttagagtcaacagcaacatccaatgccaaaagacctaaaatagaggttaatatagcactggttgaagagatacagaaaatcaatcggcaacttatcgacactgttgtagaaattagtgacgaaggtgttgatccaagtgctcttgctgctgcaacggagggtggtgaaggcactactgttaagtgttctttcactgccgttgcattgagtccaaacttaaaagcactgtatgcttcagcgcagatgtctccaattcagcctttgagattgctcgttccagttaattatccaaactgctgtccgattttgttggacaagtttccagttgaagttagtaaagagtatgaagatctatccacaaaggccaagtcaaggtttagtgtctccctgcgaagtctttcacagccaatgtctctaaaagacatagtcaagacttgggatgtttgtgctcgtgctgtaatttgtgaatatgcacaacaaagtggaggaggaaccttcagctcaaagtatgggtcttgggagaattgttcaactgcagcatgatcaaagatggaattatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="155677" stop="159015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155977" g_stop="156281" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156282" i_stop="157738" i_length="1457">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="157739" g_stop="157939" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="506" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="157940" i_stop="158067" i_length="128">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="158068" g_stop="158156" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="595" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="158157" i_stop="158488" i_length="332">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="158489" g_stop="158715" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="822" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-U331724" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155977" e_stop="156281"/>
          <exon e_start="157739" e_stop="157939"/>
          <exon e_start="158068" e_stop="158156"/>
          <exon e_start="158489" e_stop="158715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGTTCAAGACATCTATTCAGTTGTCAGTATGAATGATAGAATAGCAGGATCTGCTCCAGGAAATGGGTCAAGAGCAGCTGTTGGCGAAGATTTGGTTGCCATGACCAAATGTCGTCTCCAAGCGAGAAACTACTTTACGCAGGATGGACCTACAGGAACAAAGAAAATGAAGCGATATACAACTTCCAACGTTGTGTCGTCAAGCAGCAGTTTGAATGATAGTTTCTGGCAGGTGAATTATTCTGAAACACCTGAGTTAGAGTCAACAGCAACATCCAATGCCAAAAGACCTAAAATAGAGGTAATTTTCTGCTGCCTACTTACAGGATAAAAGTACAAAACTGCACGTCCAAACATGAGAGCTCCGTGGTAGACTATATTGGTTCTTAAAAGAAAAAGGAGGTCCATTCAGGTGCATTTTAGAGTTAAAAAAGTAAAAACTGATCTTTGTCCATGACTGCTAGAGAGAGAGTAGAATGACCAAATGCAATATGGTGGAATATTTCTTGAAGCTTCAGCTTGCATGCAAACTGAAACTCGACTCAGAGTGGTTTTTAACAATCATTCCTTGTGCCTGCTCTTTCATTTTTATTGATTATGTTTCTGCAACTGGAACATCATCAACCCCAAACTACCACTTATAGTTCTGTTCTGAAAACTTTGATGGCTATGATAGAATATTGTATGGAAAAATCAAACATTACTTTATGTGAACGAGACATGAGTTTTACTTCTTTAGTACTCTTTCAGCTTGTGAGTATGTCTAAATAATCTGAACTAAGTATAAGACGACTGTCTAGAATAAAGACAAATGCATTTTATTGAATGCTATATGCAACCTGAGACTTTCAATTGGCTGCTCAGTCTTTGTACCAGACTGTCATTCAGTGTCTACTTATTCAACATATGATAATGCCCAATCCCTACCACAAACTTCCCGGCTCTTAAGTGTCCCTCAGCCTTACTGTGCCTGAGCAGCACTCAGTACAAATCTATACGGAAACAATAAAAATACGCCTTCTTTCTATATGGTTTCAATATTATCCCTTTTGTAGCAACTAGCGTGTGAATATATTCTAGTGGTGAACTAAAACCCTATCTATGAACTATTTTGACTTGAATTCCCAACTGCTCCTCAATTTATTGCTAGGCTCTTTAGCATTTAGATTGACCCAAAACACTTGGTCCTTGCATTTTCATATTGGGTTTTTTTTATGCCTGGATTCACCCTACCTTTTTTGTGTTACTATAAACAATGTGAATCACTTGAATCCCACCTAATCATTTGATAGAGTTTCGCATTTCCAGACGAGTAAATTTGTTCAACAGGAAAAGCAGAAATGCTAAGTGAAAACATTCCAAGCTTTGGCAGGATACAGGGCAATAGGCATTATAATTTTATAAGACTCGAGAATATAAAGCAGCTTTGCTTCTAGGCAGCATGTGAACCAACATTCTGGAATGGTGTTTTTATTCCGTAAAGCTTTGCATTTATGGGAAAATGAGTTATTTTTGTTATTTTGTTTGTCACATGGTTGCGTTTCATCCTCTCTTTTTTAAATGATCAGACATCCAATGTTTGTTGATGTAAGATAAGAGTGTTTGATCACAAAAATGTTATCTTGTCCAGATGCTGATTTCCTTGATCTTGCATTCAAATTGATGTTTTGATCTTTGACAAGGAAATTGCTTTACTTGTCAACTTTTGGTTTCTCCAGCTTTACCTTGTGGATAACAGTAATTAGTACTTTATTGTAGGTTAATATAGCACTGGTTGAAGAGATACAGAAAATCAATCGGCAACTTATCGACACTGTTGTAGAAATTAGTGACGAAGGTGTTGATCCAAGTGCTCTTGCTGCTGCAACGGAGGGTGGTGAAGGCACTACTGTTAAGTGTTCTTTCACTGCCGTTGCATTGAGTCCAAACTTAAAAGCACTATATGCTTCAGCGCAGATGGTAAGATATTGATCTTCATATACTGAACTTGTGTCATCAACTACTTATCAAAAAAAAGAAAATCTGTCATTAACTCTTTTACATTTTTTGTTTCATTGGTTGAATGATGGTATTTTACTTCTGTGCAGTCTCCAATTCAGCCTTTGAGATTGCTCGTTCCAGTTAATTATCCAAACTGCTGTCCGATTTTGTTGGACAAGTTTCCAGTTGAAGTTAGGTGAGTAAATTTGGCAATCTTCTTGATAAGAGCAATTATAGTCCTCGTTATAAATTAAAAAAAGTAAGAGCAGCTATAACATATGAATCAAAATAGCATTAATAGATCTGATTTTTTGCCGTATTCATTATACCTTGTTGATTTGTGAAAAAAGGTCTTACAATTTGAATTCTCTAATAGTCAATCATAAAAGATTTTGTACAAGTGCCTTTTGATCTGCGTTAAGATTATCAACTAGGTTTCGAAAATCTCCTTATACAATCTTATAGTCTCCACTTTTAACTACTATGTGATGCATTTGAAAGCTGTGTTTCAACTATTTTCTTCTGCAGTAAAGAGTATGAAGATCTATCCACAAAGGCCAAGTCAAGGTTTAGTGTCTCCCTGCGAAGTCTTTCACAGCCAATGTCTCTAAAAGACATAGTCAAGACTTGGGATGTTTGTGCTCGTGCTGTAATTTGTGAATATGCACAACAAAGTGGAGGAGGAACCTTCAGCTCAAAGTATGGGTCTTGGGAGAATTGTTCAACTGCAGCATGATCAAAGACGGAATTATGAG</genome_strand>
        <mrna_strand>CGTCAGTTCAAGACATCTATTCAGTTGTCAGTATGAATGATAGAATAGCAGGATCTGCTCCAGGAAATGGGTCAAGAGCAGCTGTTGGCGAAGATTTGGTTGCCATGACCAAATGTCGTCTCCAAGCGAGAAACTACTTTACGCAGGATGGACCTACAGGAACAAAGAAAATGAAGCGATATACAACTTCCAACGTTGTGTCGTCAAGCAGCAGTTTGAATGATAGTTTCTGGCAGGTGAATTATTCTGAAACACCTGAGTTAGAGTCAACAGCAACATCCAATGCCAAAAGACCTAAAATAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATATAGCACTGGTTGAAGAGATACAGAAAATCAATCGGCAACTTATCGACACTGTTGTAGAAATTAGTGACGAAGGTGTTGATCCAAGTGCTCTTGCTGCTGCAACGGAGGGTGGTGAAGGCACTACTGTTAAGTGTTCTTTCACTGCCGTTGCATTGAGTCCAAACTTAAAAGCACTGTATGCTTCAGCGCAGATG................................................................................................................................TCTCCAATTCAGCCTTTGAGATTGCTCGTTCCAGTTAATTATCCAAACTGCTGTCCGATTTTGTTGGACAAGTTTCCAGTTGAAGTTAG............................................................................................................................................................................................................................................................................................................................................TAAAGAGTATGAAGATCTATCCACAAAGGCCAAGTCAAGGTTTAGTGTCTCCCTGCGAAGTCTTTCACAGCCAATGTCTCTAAAAGACATAGTCAAGACTTGGGATGTTTGTGCTCGTGCTGTAATTTGTGAATATGCACAACAAAGTGGAGGAGGAACCTTCAGCTCAAAGTATGGGTCTTGGGAGAATTGTTCAACTGCAGCATGATCAAAGATGGAATTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aa0YFz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324565" ref_strand="+" ref_description="SGN-U324565        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA recognition motif (RRM)-containing protein, similar to SP:P34909 General negative regulator of transcription subunit 4 {Saccharomyces cerevisiae}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) | chr3:16759159-16764818 REVERSE | Aliases: F9K21.210(evalue: 3e-106, score=382) genbank/nr: gi|15231193|ref|NP_190149.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gi|11357925|pir||T47503 hypothetical protein F9K21.210 - Arabidopsis thaliana gi|6996266|emb|CAB75492.1| putative protein [Arabidopsis thaliana](evalue: 2e-104, score=382)">
      <seq>tctctctctcctctttctctctctttctgcctttctctccatcagaaaaaagttcactggcaatcatgagcaacgaagaagagaaaagatgtcctctgtgtgctgaagagatggactggacagatcagcagtttaagccttgcaaatgtggttatcaggtgtgtctttggtgttggcatcacataatggacatggcagaaaaagatgagtcagagggacgatgtcctgcatgtcgaacaacatacgaaaaggagaaagttgttagaatgcaaacaaatattgagagggcagggaacaacaatgccaataggaaaagcaaacaacaaccaaaagcaaagcaaaaaactaatgaagccaagaaggatctcacgaatgttcgggtcattcaacgtaaaatggcatatgtgattggcctgcctctaagtcttgcagatgaagatcttttacagcggaaggaatattttgggcagtatggaaaagttaccaaaatttctctctctaggacaactggtggtgccatccagcaatttgttaatgatacttgtagtgtatatattacatattcaaaagaagaggaggccgtgcggtgtattcagtttgtacatggttttgtcttggaagatagatatttgagagcatcatttgggactgcaaaatactgccatgcgtggttgagaaacacgccttgcagtaatccgtcttgtctatatttgcatagcattggtgctgatgaagatagctttggcaaagatgacgtagctgcgattcatacaaggaatagagttcaacaaatagctggtgacgccagtaatatgatgaatcgttcaggaaatgtcttgccacctccaattgatgaattatctagcactggctttacattgactgagacatctagcattagaaatgctgcaagtgatgcatcaaatgatacagtgaattacagtagctacatggctcatgtagttcctcatgataaggatggagacgctggtggaccaaacagaatgacaacgtttgttgatattgttggacggtacaatacttctggtgcagagagcgatggaaatagcacggaagattgtaggattttgaatttatcttctgacctatcttcagtaaccattagtaaagataatcatagacatgaaaaatatcctgataaaactttgttcaaggttccatcttcaaatcacattgtcaatcatccgcgaggcaacctaaattttgttgaattttcagatgaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-2uvSR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="161406" stop="167809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161706" g_stop="161763" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="161764" i_stop="162203" i_length="440">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="162204" g_stop="162303" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="158" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="162304" i_stop="163627" i_length="1324">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="163628" g_stop="163755" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="286" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="163756" i_stop="163830" i_length="75">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="163831" g_stop="163984" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="440" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="163985" i_stop="164131" i_length="147">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="164132" g_stop="164241" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="550" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="164242" i_stop="165361" i_length="1120">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="165362" g_stop="165445" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="634" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="165446" i_stop="165527" i_length="82">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="165528" g_stop="165576" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="683" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="165577" i_stop="165696" i_length="120">
            <donor d_prob="0.462" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="165697" g_stop="165788" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="775" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="165789" i_stop="166878" i_length="1090">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="166879" g_stop="167017" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="914" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="167018" i_stop="167176" i_length="159">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="167177" g_stop="167509" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="915" r_stop="1247" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-U324565" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1247</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161706" e_stop="161763"/>
          <exon e_start="162204" e_stop="162303"/>
          <exon e_start="163628" e_stop="163755"/>
          <exon e_start="163831" e_stop="163984"/>
          <exon e_start="164132" e_stop="164241"/>
          <exon e_start="165362" e_stop="165445"/>
          <exon e_start="165528" e_stop="165576"/>
          <exon e_start="165697" e_stop="165788"/>
          <exon e_start="166879" e_stop="167017"/>
          <exon e_start="167177" e_stop="167509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCCTCTTTCTCTCTCTTTCTGCCTTTCTCTTCATCAGAAAAAAGTTCACTGTAAGTTTTTTTTTTTCAGTTTTCTGCAAATCTGAGCTTTTCAAAACCCTAACTATTGAAGAATTCGGAAATGTATGTGTGGATTTTTGTTTTTGTTTTGTTAATTTTTTGTGTTGTGTGGAAATGCGGATGATTATATGAATGTACATGTATGATTTATTTATTATTGTTTTTGGTGTGTGAATCGTATAGCTAGATTTGTTAATTGAATGCGTTGAATCTATGTTTTTGTTTTTTTTTTTGAATTTTCTGATCTGTTGTGGAAATGTTGGTGTGTTACCTGTAGATTAGGGTTTTGAAGTTTTTTTTTTATTTGTTGTTTTAATAAATGTGTACTAGGTTGGAGGAAATGTAGGTGAAGAGTATTAATGTGTGAAGATGTTTGTTGTAGTAGAATTAATTGAATGTGATTTTAAAATAGTTTTTGGAATTGATTGCAGGGCAATCATGAGCAACGAAGAAGAGAAAAGATGTCCTCTGTGTGCTGAAGAGATGGACTGGACAGATCAGCAGTTTAAGCCTTGCAAATGTGGTTATCAGGTATAGATTCTTTGGGTTTTTTCTTTTGTTTTTGAATTTTTCCTGTTATTTATTTTGGTTGAGATATGGCATGTGTTGGTTCTGGTTGGTAGATAGTGCTACTGGTATTGAATATATGTTATAATCGAACTGGTATGAACTGAATTTCACTTTAAAAAATTATTTTAGCTGAACTAGTTTGCTATTATCTGGCGATTATAGAAGATTTTTACATTTCTGTGCGAAGTTATGTAGACATTTGCTGAGTCTGAGACTGCTTCAGATTTCATGTATTTAGTATGCGTCTGCCGTCTGTATTTGTATTTTTAAATTAGAAATCTTGGTTGGCTCAATCCTAGTTTCCTTTTAATTGCAGTTTTTGGTCTAAAACTTTTTTTACTTTATTGAGCTGATGAGAGAATAAATAACTTTATTACAAGCTTTATTTTGATGTGAACAATTGCTTTAGGTAAGACTAGATCAATGATAAACACATTTTGTGATATCAGGAAATTTCTCCTTTTTTGGTTGTAGAATTAGTATATACACTGACGCGGTTCTTCAGCCTTACATTCAATATTAGCCATGAATACCGTAGTAGTGTTCACATTTTCTTTTCGTGAATATGACTGGATGGTTTAGACTTCAGTGATCATTTGAAATTATTGATGTATCAACAGACTCCATGTTTGTCAGCTTTGAAGTAGCTTCAGCTCCTAAGAGCACTCACTACATAGGAAACAGTTCCTAACAGGATGACAACATGCTCTTTCAAGTTTATTAACGTGGATAATTCTTTCGTTACAATATGCCGTTTGTTATACTCTGAGTGCTATCTTTAATATTTTGAAAATGGGGTAGAGTTCAGCTAGAGAAAGACCAATAATATGCAATTATTGTTTTTCTTCTTGACGTATATGATATTGATTTTTTTCCCCAGAATTCAGTTGGTTTCTAAGATCACTTCTGGTGCTAGCCTTTTTATTAGTTATTCTGGTAGACCCCCAGCCAATGTATTTTTCTTTAAATGGAGTTCCTGATAAAGCTACGTAAAGACTCTTATTGTTATTCCTATTTTATAAATATTATTTTGTTGAACTAAGAAAACATTGATGATTCCAGTTCAAAATTTTCAGCCGTATAAAGTTAGTTGAAAGAATAATTAGATACATCGTAGCTATCACACTTCCAAGTACTTGAGTCATTACTATTAGATTTTGTTAGAAGCTTGGCAAGACAGCACACTTGTTAGTATGATATTTAAGGGAGGAGTGCTAAAATGTAGACTTTCTAATACATCAGTTGTTTTCTTTTTGTGGCTTATATTTTACAATTATTACTACAGGTGTGTCTTTGGTGTTGGCATCACATAATGGACATGGCAGAAAAAGATGAGTCAGAGGGACGATGTCCTGCATGTCGAACAACATACGAAAAGGAGAAAGTTGTTAGAATGCAAACAAATATTGAGAGGTTTTTTCCCTTGTGACTAATTTACTTTTTATGGTGTATGGAGATAGAATATAACTGACAGTTGGCTTCTAACAGGGCAGGGAACAACAATGCCAATAGGAAAAGCAAACAACAACCAAAGGCAAAGCCAAAAACTAATGAAGCCAAGAAGGATCTCACGAATGTTCGGGTCATTCAACGTAAAATGGCATATGTGATTGGCCTGCCTCTAAGTCTTGCAGATGAAGATGTATGGAGTTATTTTCCATGTTACCCGTTGCTAATTTCTTTTTGATGAAGTAATTGGTTTTGTTAATTCTAAATTTTATTGACCCTGGAATTATAGGAAAAAATCTTCTTGTCCATCTCTCTCCTGATAATTTTTATTCTTGAGCAGCTTTTACAGCGGAAGGAATATTTTGGGCAGTATGGAAAAGTTACCAAAATTTCTCTCTCTAGGACAACTGGTGGTGCCATCCAGCAATTTGTTAATGATACTTGTAGTGTGTGAGTAATGCTACATGTCTTGGTTATCATGGCTTGTTTAGGTTTTTATTAATGAGAGATTTGCTCTTACGGGCTCTTTGTTTCCTTTAGATTCAACTAGTCCAAGTTTTGTCTTAAAAGGCGGGGACTTTATATTTTATTTTTCTCTGGTGCTATTACCTTAATATGTTCCCATTACTTCATCCTGATTTTCCCTTGTTTGGATCTTATTACTTTGTTTAGGTCAATATTATTTATCTCATGTTGCAATGGTCTAATGTCTTGGGTTTCTTCCTAAATTTGTCTTGCAGACAATTGTTTTTGTTTTGCTGAAACTGGGTACATATTCAGCACAATCTTATTGCTGCTTCATCAGTTACATGATATGTTTACCTATGAAATTTCTTTTTGCTGAAAGCTGTTACATTATCCTTACTTATCTTAATACCAACATAAGGTGCTAGATTGTAGAATCCTTTCAATTGTAGGTGCTTGTACCCTAAGCTGCCCAATTTTCCAGTTAATCTTTGGGTTAACAATTAAAATCTGGATATGTATTTCCAAACTCTTCTAGTACAGAAGCTCAAATCATTGAACTTCTCATGAAGAAATTTCCAAATTGAGGTTCAAAGGGCAAACCAGTTTGTCACAATTTAGACATGTTTGGGTTGTTGGATATTACGAGAGCTCATAATCATTTACTTGCTATTCCTATTTAAATTATTTCAAACAAAATTCATTTAGGATGTTGCAAGATGATAACTTTGATTGTATCAGTAGTTGAGACTTGAGAGAGGTGAAATTGGTGGCATTTAATTCAAAGGTGGCTTAGCCATGATACATGATCAGTAAGAGGCTAGAAGCCTAGAACTATAGGAGTTATTAAAATACTTCGGTGCTGAAACTGCATGTGGGGGAAAATAGAAGGTTTGATTGAATGTCTCTGTTTGGATTTGTTTTAGTACTATTGAAGTCAGAACTGTTTTGACTCTTGGTGTATTCAGTTATTCTTCACAATTTCATATACTTGTGCATTTCTAGAGTGTGCATAATTTGCTGTTCAATTTTGGTTTGATTGCATTCCCCCCCTCAGGATTGTCATTCTCATATTTGATCATTTTCTGCTTCTTGTTTTTTGCAGATATATTACATATTCAAAAGAAGAGGAGGCCGTGCGGTGTATTCAGTTTGTACATGGTTTTGTCTTGGAAGATAGATATTTGAGGTAAGCATCTACCCCTTTCTTTTGTTTCCTTGGTCAGTGATGTATACTTTGATTTTCCTTACATTAAAAATGGCCTATGCAGAGCATCATTTGGGACTGCAAAATACTGCCATGCGTGGTTGAGAAACACGGTATGGACTGTGGTCTGTTTGTGATCACTATTCCTCTTGTCACTCCCTTTGTGGGAGCATGTTAAAGTTTGCTGAACAAATGAATAACCAGTGTTGACATGCTCCTTTTCTTTTGCGCAGCCTTGCAGTAATCCGTCTTGTCTATATTTGCATAGCATTGGTGCTGATGAAGATAGCTTTGGCAAAGATGACGTAGCTGCGATTCATACAAGGTATTCAAGATACAAAACTTCCCTCCAATACTGACGTGCTCCCTCTGATGTGCATATGTGATCTGAGGTTAATTTAGAGAGTAGTGTATGACTGCATCACCCGTAATAAACTATAGCTATCATATATTTCTAGTGTCCTCTTTTGGGTGGGATGAAACACAGTGCATAAAAGAAGAATCAGTTTTTCAGTTTTGCAATACATCCAATTGGTGTTCTGCAAGCTTTACAGGCAGAAACTGGTGTTCCAAGTATATGATTTTGATACTTGGTTGACAAGAATGATGTTCCTGTTGCACCCAAGTAGATATCATTTTGGTCAACTTGGTGTTGAAGGTCTCATGTTGCCAGTTCCAAAAAAAAGCATGGTGCTGAAGGTCTCTTGAAGGTCACTCTGCACATGCTAATATCCAGTGACACATTATTGCCTATTACTGTAACATGAATATATCTTCCTTGAGAATTGGTGAATGCCAACCTGTTTATTTTCTTGGTGAGATACGAAGGAATTTTCTATTATGGATAATAAATAATGAGGAGGTAGTTTGCATTTTCCCCTGTTTCCCATTTCTTGATATAATAGGCTGTGATGGCCTGTGCTAGCACAAGCCCAACATCGTAGACGTTGGAACTTTCATTGTTAATGGACTTAATTTTGATATGAAATTGCAAATAATGAAAATTAATACATGTGAGTGACCATCAAATTAGATATAGACATCATCACAGCACATAAACAGAGTTATTCTGTTTATAAATGAAATGACTAATATGCTCTCAGCTTGTAATTTAAATTCCATTGAATAGATATATCGAAACCTATAGCTGTTCTGTATAATATAAATAACTGCCTTGCCTTGGACAATGTCAATGTTTATTTCTTTTGCTAATTGAATGTTGACTCTTCTGATCTTCAATGATACTTTTTTCCCAAGGAATGCCTGCAGATTTGTTCTAGTGGACCTTAGAGGTTCCTGAAGTTTATATATTTCTGTAGTTGGTCTAACTGAAGGGTTTTATGTAATTGTTGCTTTGCATAGTAAAATTCTCCTGGGTATAGTCTCAGCATTGGTTTCATTTGTTGGTTATACAGGAATAGAGTTCAACAAATAGCTGGTGACGCCAGTAATATGATGAATCGTTCAGGAAATGTCTTGCCACCTCCAATTGATGAATTATCTAGCACTGGCTTTACATTGACTGAGACATCTAGCATTAGAAATGCTGCAAGTGTAAGAAACCTTGATGTTTAGTTCTGCATTAAGCAAAAGTATCTAAACATTTAGCTTCAGTTTCAGCACAAAAGTTGCTGTAGTTTTCTTTTATATACTGTATGGATTCTTTGGTTTGAACTGCAAAAATGTTCACCGAATGCTTTTTATTTGATTTAGGATGCATCAAATGATACAGTGAATTACAGTAGCTACATGGCTCATGTAGTTCCTCATGATAAGGATGGAGACGCTGGTGGACCAAACAGAATGACAACGTTTGTTGATATTGTTGGACGGTACAATACTTCTGGTGCAGAGAGCGATGGAAATAGCACGGAAGATTGTAGGATTTTGAATTTATCTTCTGACCTATCTTCAGTAACCATTAGTAAAGATAATCATAGACATGAAAAATATCCTGATAAAACTTTGTTCAAGGTTCCATCTTCAAATCACATTGTCAATCATCCGCGAGGCAACCTAAATTTTGTTGAATTTTCAGATGAACCT</genome_strand>
        <mrna_strand>TCTCTCTCTCCTCTTTCTCTCTCTTTCTGCCTTTCTCTCCATCAGAAAAAAGTTCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATCATGAGCAACGAAGAAGAGAAAAGATGTCCTCTGTGTGCTGAAGAGATGGACTGGACAGATCAGCAGTTTAAGCCTTGCAAATGTGGTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCTTTGGTGTTGGCATCACATAATGGACATGGCAGAAAAAGATGAGTCAGAGGGACGATGTCCTGCATGTCGAACAACATACGAAAAGGAGAAAGTTGTTAGAATGCAAACAAATATTGAGAG...........................................................................GGCAGGGAACAACAATGCCAATAGGAAAAGCAAACAACAACCAAAAGCAAAGCAAAAAACTAATGAAGCCAAGAAGGATCTCACGAATGTTCGGGTCATTCAACGTAAAATGGCATATGTGATTGGCCTGCCTCTAAGTCTTGCAGATGAAGAT...................................................................................................................................................CTTTTACAGCGGAAGGAATATTTTGGGCAGTATGGAAAAGTTACCAAAATTTCTCTCTCTAGGACAACTGGTGGTGCCATCCAGCAATTTGTTAATGATACTTGTAGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTACATATTCAAAAGAAGAGGAGGCCGTGCGGTGTATTCAGTTTGTACATGGTTTTGTCTTGGAAGATAGATATTTGAG..................................................................................AGCATCATTTGGGACTGCAAAATACTGCCATGCGTGGTTGAGAAACACG........................................................................................................................CCTTGCAGTAATCCGTCTTGTCTATATTTGCATAGCATTGGTGCTGATGAAGATAGCTTTGGCAAAGATGACGTAGCTGCGATTCATACAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAGAGTTCAACAAATAGCTGGTGACGCCAGTAATATGATGAATCGTTCAGGAAATGTCTTGCCACCTCCAATTGATGAATTATCTAGCACTGGCTTTACATTGACTGAGACATCTAGCATTAGAAATGCTGCAAGT...............................................................................................................................................................GATGCATCAAATGATACAGTGAATTACAGTAGCTACATGGCTCATGTAGTTCCTCATGATAAGGATGGAGACGCTGGTGGACCAAACAGAATGACAACGTTTGTTGATATTGTTGGACGGTACAATACTTCTGGTGCAGAGAGCGATGGAAATAGCACGGAAGATTGTAGGATTTTGAATTTATCTTCTGACCTATCTTCAGTAACCATTAGTAAAGATAATCATAGACATGAAAAATATCCTGATAAAACTTTGTTCAAGGTTCCATCTTCAAATCACATTGTCAATCATCCGCGAGGCAACCTAAATTTTGTTGAATTTTCAGATGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>17</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="946" PGL_stop="3803"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="946" e_stop="1038"/>
            <exon e_start="1573" e_stop="1700"/>
            <exon e_start="1839" e_stop="1997"/>
            <exon e_start="2077" e_stop="2262"/>
            <exon e_start="2860" e_stop="3051"/>
            <exon e_start="3128" e_stop="3803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.868" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.649" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="946" e_stop="1038" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.938">
            <gDNA_intron_boundary i_start="1039" i_stop="1572" i_length="534"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1573" e_stop="1700" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="1701" i_stop="1838" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1839" e_stop="1997" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.914">
            <gDNA_intron_boundary i_start="1998" i_stop="2076" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2077" e_stop="2262" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.868">
            <gDNA_intron_boundary i_start="2263" i_stop="2859" i_length="597"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2860" e_stop="3051" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.902" acc_prob="0.649">
            <gDNA_intron_boundary i_start="3052" i_stop="3127" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="3128" e_stop="3803" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="946" stop="1038"/>
              <exon start="1573" stop="1700"/>
              <exon start="1839" stop="1997"/>
              <exon start="2077" stop="2262"/>
              <exon start="2860" stop="3051"/>
              <exon start="3128" stop="3803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321823" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATTTAAATAATTCATCCCTACCTCTGGAGCATCATCTCCGTGCCTTAGAGGAGCTGTTGGTACTTGTTGAGCATATTGATAATGCAATTG : ATCTGCAGAAACTTGGAGGCTTCAGCATACTTGTAAGAATACTTAATCATTCTGAACCAGAAATAAGGATTGCTGCGGCATGGGTTCTTGGCAAAGCCAGTCAAAACAACCCCATTGTTCAGAAGCAG : GTCCTGGAACTTGGGGCATTGACAGTGCTAATGAAGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAG : GAGGTTCTTAGCAATTCAAATCTGGATATCAGGTTGCATAAGAAGTCACTGTTTCTTATTGCTGATTTAGCCGAGAGTCAGCTGGAAAATGAGAACACAGCTGAGGTTTCCTTTTTTAGCAATCGATTGTTACTGAAGGCCATCGTTGATTCAATGGCATCAAGCGATCTTGATCTAACAGAAAAG : GCCCTTTACGCAACTAAAAACTTACTACTACTTAGATCGACTGATGTTCAACTCTTCAAGGACTTCTGTAAATTGAACGAGGTACTTGAGAGGACGAGGCAACAGTTGAATGATCTTAGTGAAGAATACGCAATGGATGTGGAGAGTCTTCGAAAAGAAGTTAACCTGACCTTCCTTCAAAAGCTGAATGAG : GTTACACAATCTGCATTATGATGACAGTCTCTGGCTTGATCTGGGTTTTGAACGTTATACTGCTTGCATTCTACGCGCGGAAGTAACCAAGTGGATCGCGATATCTTCATCATCCCACGCCTTTGTTCATCTGGACGTGGACTCGAAATTGGTACATCATCATCTGCTTAGGACAACACTAATGTGAAATAGACAACATTATGAGCTAACGACGACTCGCGCTGATTTTATAAGTGCCTCTACTATTTAAGTTATAGCCAATTTTGTCGAATATTTAACTTTTATCAATCTTGCAAAATTGATAGCAATGTAATGTATGTGATGAGAAAATCAATTTTGTGGAAAGACCAATATTTTCTGCTTCTACAGAATTTGTATCAACCTTTAAGAGAATATTCAATTTTCTACGAATTTATTATGTATCTATTTCACATAAAAAATAAAAAAAAAAAGGGAAATTGCGCGTATTAGTAGAAATATAATAGTCAATTTAGTGAACATAACTATAGTTTGTTATTATTATAATTTGCTGACCTATTTTTAGATACAATTATGCGGATTATTTTTTAGTTTTTGTATAATTAGCATGTTTGTAGAATTTAGAGTTTGTATAATATATTTTGTATAATTTTTATACAATGCAATTTTATATAATATGTACAACTGTTTACACTTT</gDNA_template>
            <first_frame> M  I  *  I  I  H  P  Y  L  W  S  I  I  S  V  P  *  R  S  C  W  Y  L  L  S  I  L  I  M  Q  L  :  I  C  R  N  L  E  A  S  A  Y  L  *  E  Y  L  I  I  L  N  Q  K  *  G  L  L  R  H  G  F  L  A  K  P  V  K  T  T  P  L  F  R  S  R :   S  W  N  L  G  H  *  Q  C  *  *  R  *  *  N  L  T  P  R  K  K  L  *  K  H  Y  L  L  F  Q  H  *  *  E  I  T  *  M  A  E  V  C  F  I  R  K  L  E  I  R  C  F  R :   R  F  L  A  I  Q  I  W  I  S  G  C  I  R  S  H  C  F  L  L  L  I  *  P  R  V  S  W  K  M  R  T  Q  L  R  F  P  F  L  A  I  D  C  Y  *  R  P  S  L  I  Q  W  H  Q  A  I  L  I  *  Q  K  R :   P  F  T  Q  L  K  T  Y  Y  Y  L  D  R  L  M  F  N  S  S  R  T  S  V  N  *  T  R  Y  L  R  G  R  G  N  S  *  M  I  L  V  K  N  T  Q  W  M  W  R  V  F  E  K  K  L  T  *  P  S  F  K  S  *  M  R :   L  H  N  L  H  Y  D  D  S  L  W  L  D  L  G  F  E  R  Y  T  A  C  I  L  R  A  E  V  T  K  W  I  A  I  S  S  S  S  H  A  F  V  H  L  D  V  D  S  K  L  V  H  H  H  L  L  R  T  T  L  M  *  N  R  Q  H  Y  E  L  T  T  T  R  A  D  F  I  S  A  S  T  I  *  V  I  A  N  F  V  E  Y  L  T  F  I  N  L  A  K  L  I  A  M  *  C  M  *  *  E  N  Q  F  C  G  K  T  N  I  F  C  F  Y  R  I  C  I  N  L  *  E  N  I  Q  F  S  T  N  L  L  C  I  Y  F  T  *  K  I  K  K  K  R  E  I  A  R  I  S  R  N  I  I  V  N  L  V  N  I  T  I  V  C  Y  Y  Y  N  L  L  T  Y  F  *  I  Q  L  C  G  L  F  F  S  F  C  I  I  S  M  F  V  E  F  R  V  C  I  I  Y  F  V  *  F  L  Y  N  A  I  L  Y  N  M  Y  N  C  L  H  F </first_frame>
            <second_frame>  *  F  K  *  F  I  P  T  S  G  A  S  S  P  C  L  R  G  A  V  G  T  C  *  A  Y  *  *  C  N  * :   S  A  E  T  W  R  L  Q  H  T  C  K  N  T  *  S  F  *  T  R  N  K  D  C  C  G  M  G  S  W  Q  S  Q  S  K  Q  P  H  C  S  E  A   : G  P  G  T  W  G  I  D  S  A  N  E  D  D  E  I  S  H  H  G  R  S  C  K  S  I  I  C  Y  F  S  T  N  K  K  *  H  E  W  P  K  F  V  L  S  G  S  W  R  Y  D  A  S   : G  G  S  *  Q  F  K  S  G  Y  Q  V  A  *  E  V  T  V  S  Y  C  *  F  S  R  E  S  A  G  K  *  E  H  S  *  G  F  L  F  *  Q  S  I  V  T  E  G  H  R  *  F  N  G  I  K  R  S  *  S  N  R  K   : G  P  L  R  N  *  K  L  T  T  T  *  I  D  *  C  S  T  L  Q  G  L  L  *  I  E  R  G  T  *  E  D  E  A  T  V  E  *  S  *  *  R  I  R  N  G  C  G  E  S  S  K  R  S  *  P  D  L  P  S  K  A  E  *   : G  Y  T  I  C  I  M  M  T  V  S  G  L  I  W  V  L  N  V  I  L  L  A  F  Y  A  R  K  *  P  S  G  S  R  Y  L  H  H  P  T  P  L  F  I  W  T  W  T  R  N  W  Y  I  I  I  C  L  G  Q  H  *  C  E  I  D  N  I  M  S  *  R  R  L  A  L  I  L  *  V  P  L  L  F  K  L  *  P  I  L  S  N  I  *  L  L  S  I  L  Q  N  *  *  Q  C  N  V  C  D  E  K  I  N  F  V  E  R  P  I  F  S  A  S  T  E  F  V  S  T  F  K  R  I  F  N  F  L  R  I  Y  Y  V  S  I  S  H  K  K  *  K  K  K  G  K  L  R  V  L  V  E  I  *  *  S  I  *  *  T  *  L  *  F  V  I  I  I  I  C  *  P  I  F  R  Y  N  Y  A  D  Y  F  L  V  F  V  *  L  A  C  L  *  N  L  E  F  V  *  Y  I  L  Y  N  F  Y  T  M  Q  F  Y  I  I  C  T  T  V  Y  T   </second_frame>
            <third_frame>   D  L  N  N  S  S  L  P  L  E  H  H  L  R  A  L  E  E  L  L  V  L  V  E  H  I  D  N  A  I   : D  L  Q  K  L  G  G  F  S  I  L  V  R  I  L  N  H  S  E  P  E  I  R  I  A  A  A  W  V  L  G  K  A  S  Q  N  N  P  I  V  Q  K  Q  :  V  L  E  L  G  A  L  T  V  L  M  K  M  M  K  S  H  T  T  E  E  A  V  K  A  L  F  A  I  S  A  L  I  R  N  N  M  N  G  R  S  L  F  Y  Q  E  A  G  D  T  M  L  Q  :  E  V  L  S  N  S  N  L  D  I  R  L  H  K  K  S  L  F  L  I  A  D  L  A  E  S  Q  L  E  N  E  N  T  A  E  V  S  F  F  S  N  R  L  L  L  K  A  I  V  D  S  M  A  S  S  D  L  D  L  T  E  K  :  A  L  Y  A  T  K  N  L  L  L  L  R  S  T  D  V  Q  L  F  K  D  F  C  K  L  N  E  V  L  E  R  T  R  Q  Q  L  N  D  L  S  E  E  Y  A  M  D  V  E  S  L  R  K  E  V  N  L  T  F  L  Q  K  L  N  E  :  V  T  Q  S  A  L  *  *  Q  S  L  A  *  S  G  F  *  T  L  Y  C  L  H  S  T  R  G  S  N  Q  V  D  R  D  I  F  I  I  P  R  L  C  S  S  G  R  G  L  E  I  G  T  S  S  S  A  *  D  N  T  N  V  K  *  T  T  L  *  A  N  D  D  S  R  *  F  Y  K  C  L  Y  Y  L  S  Y  S  Q  F  C  R  I  F  N  F  Y  Q  S  C  K  I  D  S  N  V  M  Y  V  M  R  K  S  I  L  W  K  D  Q  Y  F  L  L  L  Q  N  L  Y  Q  P  L  R  E  Y  S  I  F  Y  E  F  I  M  Y  L  F  H  I  K  N  K  K  K  K  G  N  C  A  Y  *  *  K  Y  N  S  Q  F  S  E  H  N  Y  S  L  L  L  L  *  F  A  D  L  F  L  D  T  I  M  R  I  I  F  *  F  L  Y  N  *  H  V  C  R  I  *  S  L  Y  N  I  F  C  I  I  F  I  Q  C  N  F  I  *  Y  V  Q  L  F  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="948" stop="1038"/>
                    <exon start="1573" stop="1700"/>
                    <exon start="1839" stop="1997"/>
                    <exon start="2077" stop="2262"/>
                    <exon start="2860" stop="3051"/>
                    <exon start="3128" stop="3148"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLNNSSLPLEHHLRALEELLVLVEHIDNAIDLQKLGGFSILVRILNHSEPEIRIAAAWVLGKASQNNPIVQKQVLELGALTVLMKMMKSHTTEEAVKALFAISALIRNNMNGRSLFYQEAGDTMLQEVLSNSNLDIRLHKKSLFLIADLAESQLENENTAEVSFFSNRLLLKAIVDSMASSDLDLTEKALYATKNLLLLRSTDVQLFKDFCKLNEVLERTRQQLNDLSEEYAMDVESLRKEVNLTFLQKLNEVTQSAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3353" stop="3598"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYKCLYYLSYSQFCRIFNFYQSCKIDSNVMYVMRKSILWKDQYFLLLQNLYQPLREYSIFYEFIMYLFHIKNKKKKGNCAY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4732" PGL_stop="7132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4732" e_stop="4953"/>
            <exon e_start="5591" e_stop="5686"/>
            <exon e_start="6791" e_stop="7005"/>
            <exon e_start="7081" e_stop="7132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4732" e_stop="4953" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4954" i_stop="5590" i_length="637"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5591" e_stop="5686" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="5687" i_stop="6790" i_length="1104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6791" e_stop="7005" e_length="215"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7006" i_stop="7080" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="7081" e_stop="7132" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4732" stop="4953"/>
              <exon start="5591" stop="5686"/>
              <exon start="6791" stop="7005"/>
              <exon start="7081" stop="7132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340368" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGTGATATTCAAGGAGCAGATAGAGAAATACAGGTTGCATCATCAGCTTAAGAGGGAAATGGAGATTCAAACAAGTCTTCATCATCCCAATGTGTTGAGGCTATATGGTTGGTTTCATGATGAGGAGCGGATTTACTTGATTTTGGAGTATGCTCATCGCGGTGAGCTGTATAGGGAGCTAAGGAAGATAGGTCGTCTGTCTGAGAAACAAGCTGCCATA : TATATTGCAAGTCTCACTCAAGCACTGGCGTACTGTCATGAGAAGCATGTTATTCACAGGGACATAAAGCCGGAAAACCTGTTACTTGATCATGAG : GGCCGCTTAAAGATTGCAGACTTTGGGTGGTCTGTACAATCTAGAAGCAAGAGACATACAATGTGCGGAACTCTGGACTATCTGGCACCAGAAATGGTGGAGAACAAAGCTCATGATTATTCAGTTGACAATTGGACCCTGGGGATCCTTTGCTATGAATTTCTATATGGTGTGCCTCCATTTGAGGCCGAGAGACAGACTGACACATTCAGAAG : AATTATGAAGGTAGACCTCAGCTTCCCTTCAACACTTGATGTATCTGCTGAA</gDNA_template>
            <first_frame> K  V  I  F  K  E  Q  I  E  K  Y  R  L  H  H  Q  L  K  R  E  M  E  I  Q  T  S  L  H  H  P  N  V  L  R  L  Y  G  W  F  H  D  E  E  R  I  Y  L  I  L  E  Y  A  H  R  G  E  L  Y  R  E  L  R  K  I  G  R  L  S  E  K  Q  A  A  I  :  Y  I  A  S  L  T  Q  A  L  A  Y  C  H  E  K  H  V  I  H  R  D  I  K  P  E  N  L  L  L  D  H  E  :  G  R  L  K  I  A  D  F  G  W  S  V  Q  S  R  S  K  R  H  T  M  C  G  T  L  D  Y  L  A  P  E  M  V  E  N  K  A  H  D  Y  S  V  D  N  W  T  L  G  I  L  C  Y  E  F  L  Y  G  V  P  P  F  E  A  E  R  Q  T  D  T  F  R  R :   I  M  K  V  D  L  S  F  P  S  T  L  D  V  S  A  E </first_frame>
            <second_frame>  R  *  Y  S  R  S  R  *  R  N  T  G  C  I  I  S  L  R  G  K  W  R  F  K  Q  V  F  I  I  P  M  C  *  G  Y  M  V  G  F  M  M  R  S  G  F  T  *  F  W  S  M  L  I  A  V  S  C  I  G  S  *  G  R  *  V  V  C  L  R  N  K  L  P  Y :   I  L  Q  V  S  L  K  H  W  R  T  V  M  R  S  M  L  F  T  G  T  *  S  R  K  T  C  Y  L  I  M  R :   A  A  *  R  L  Q  T  L  G  G  L  Y  N  L  E  A  R  D  I  Q  C  A  E  L  W  T  I  W  H  Q  K  W  W  R  T  K  L  M  I  I  Q  L  T  I  G  P  W  G  S  F  A  M  N  F  Y  M  V  C  L  H  L  R  P  R  D  R  L  T  H  S  E   : E  L  *  R  *  T  S  A  S  L  Q  H  L  M  Y  L  L   </second_frame>
            <third_frame>   G  D  I  Q  G  A  D  R  E  I  Q  V  A  S  S  A  *  E  G  N  G  D  S  N  K  S  S  S  S  Q  C  V  E  A  I  W  L  V  S  *  *  G  A  D  L  L  D  F  G  V  C  S  S  R  *  A  V  *  G  A  K  E  D  R  S  S  V  *  E  T  S  C  H   : I  Y  C  K  S  H  S  S  T  G  V  L  S  *  E  A  C  Y  S  Q  G  H  K  A  G  K  P  V  T  *  S  *   : G  P  L  K  D  C  R  L  W  V  V  C  T  I  *  K  Q  E  T  Y  N  V  R  N  S  G  L  S  G  T  R  N  G  G  E  Q  S  S  *  L  F  S  *  Q  L  D  P  G  D  P  L  L  *  I  S  I  W  C  A  S  I  *  G  R  E  T  D  *  H  I  Q  K  :  N  Y  E  G  R  P  Q  L  P  F  N  T  *  C  I  C  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4732" stop="4953"/>
                    <exon start="5591" stop="5686"/>
                    <exon start="6791" stop="7005"/>
                    <exon start="7081" stop="7132"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVIFKEQIEKYRLHHQLKREMEIQTSLHHPNVLRLYGWFHDEERIYLILEYAHRGELYRELRKIGRLSEKQAAIYIASLTQALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYSVDNWTLGILCYEFLYGVPPFEAERQTDTFRRIMKVDLSFPSTLDVSAE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="24642" PGL_stop="17670"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24642" e_stop="24246"/>
            <exon e_start="22150" e_stop="22067"/>
            <exon e_start="21968" e_stop="21814"/>
            <exon e_start="21690" e_stop="21593"/>
            <exon e_start="20828" e_stop="20720"/>
            <exon e_start="19657" e_stop="19500"/>
            <exon e_start="19279" e_stop="19210"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="0.932"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="24642" e_stop="24246" e_length="397"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22150" e_stop="22067" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21968" e_stop="21814" e_length="155"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21690" e_stop="21593" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.839">
            <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="20828" e_stop="20720" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.959">
            <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19657" e_stop="19500" e_length="158"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19499" i_stop="19280" i_length="220"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19279" e_stop="19210" e_length="70"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24642" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19500"/>
              <exon start="19279" stop="19210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG : GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG : GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG : ATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG : TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG : TATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATCTGATTGTTCTTCGCACGTTCAGCAAAAGAGCTG : TGGTATTCCAATCCTCAGGTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGA</gDNA_template>
            <first_frame> P  L  P  P  A  I  Q  L  Y  Q  F  L  S  L  L  S  L  S  L  Y  Y  I  Y  S  F  S  L  Y  S  L  Y  I  C  N  G  L  L  I  L  L  *  V  F  Q  E  M  N  F  E  C  R  I  *  Q  V  L  I  D  G  C  D  *  I  M  Q  H  F  I  Y  *  H  C  *  S  K  T  Q  F  F  K  R  R  E  S  E  E  E  N  C  L  Y  G  L  F  S  V  S  A  R  R  G  E  P  S  A  E  T  R  C  K  W  G  F  F  Y  S  D  P  S  S  *  I  V  P  L  P  T  H  F  A  I  *   : G  L  V  H  S  S  W  *  K  A  *  G  H  C  E  I  R  R  *  R  K  P  L  W  T  S  S  R   : G  K  R  S  F  G  V  Y  E  I  S  I  H  L  S  *  S  *  K  P  H  A  A  C  S  S  C  *  R  F  W  P  *  I  *  V  Y  S  C  R  V  R  C  R  *  T  H  *  F  D  N  E  :  M  H  I  G  S  W  *  Q  D  C  *  L  P  T  H  F  H  N  V  *  I  *  C  S  C  K  W  S  R  C  H  Q  G :   A  *  E  P  R  L  *  P  G  R  *  T  D  Y  R  S  G  *  T  *  E  T  K  V  H  I  S  D  I  T  *  *  S  *  W  E  :  Y  N  *  *  *  N  S  F  G  N  T  S  P  A  H  I  G  N  I  G  *  S  I  C  *  V  F  W  N  G  V  *  D  E  V  G  E  E  A  *  K  S  D  C  S  S  H  V  Q  Q  K  S  C :   G  I  P  I  L  R  F  S  W  T  K  S  R  I  W  S  F  S  T  E  Y  Y  * </first_frame>
            <second_frame>  L  S  R  R  L  S  S  C  T  S  F  S  L  Y  F  L  S  L  Y  I  I  Y  T  V  S  L  S  T  L  S  I  Y  V  M  V  Y  *  F  C  F  E  F  F  K  K  *  T  L  N  A  G  Y  S  K  F  *  L  M  G  V  I  E  L  C  N  I  S  S  I  S  I  V  R  A  K  P  S  S  L  N  E  G  N  R  R  R  R  I  A  C  M  A  S  S  V  S  V  Q  E  E  E  S  H  Q  Q  K  Q  G  V  N  G  G  S  F  I  R  T  H  L  L  K  L  S  P  Y  Q  P  I  L  P  F  E  :  V  L  S  T  R  L  G  R  K  P  E  D  I  V  K  L  D  A  N  E  N  P  Y  G  P  P  P  E  :  V  N  E  A  L  G  S  M  K  F  P  Y  I  Y  P  D  P  E  S  R  T  L  R  A  A  L  A  E  D  S  G  L  E  S  E  Y  I  L  A  G  C  G  A  D  E  L  I  D  L  I  M  R :   C  I  L  D  P  G  D  K  I  V  D  C  P  P  T  F  T  M  Y  E  F  D  A  A  V  N  G  A  G  V  I  K   : V  P  R  N  P  D  F  S  L  D  V  E  R  I  T  E  V  V  E  R  E  K  P  K  C  I  F  L  T  S  P  N  N  P  D  G  S :   I  I  D  D  E  T  L  L  E  I  L  H  L  P  I  L  V  I  L  D  E  A  Y  V  E  F  S  G  M  E  S  K  M  K  W  V  K  K  H  E  N  L  I  V  L  R  T  F  S  K  R  A   : V  V  F  Q  S  S  G  L  A  G  L  R  V  G  Y  G  A  F  P  R  S  I  I   </second_frame>
            <third_frame>   S  P  A  G  Y  P  V  V  P  V  S  L  S  T  F  S  L  S  I  L  Y  I  Q  F  L  S  L  L  S  L  Y  M  *  W  F  I  D  F  A  L  S  F  S  R  N  E  L  *  M  Q  D  I  A  S  F  D  *  W  V  *  L  N  Y  A  T  F  H  L  L  A  L  L  E  Q  N  P  V  L  *  T  K  G  I  G  G  G  E  L  L  V  W  P  L  Q  C  Q  C  K  K  R  R  A  I  S  R  N  K  V  *  M  G  V  L  L  F  G  P  I  F  L  N  C  P  L  T  N  P  F  C  H  L  R :   S  C  P  L  V  L  V  E  S  L  R  T  L  *  N  *  T  L  T  K  T  P  M  D  L  L  Q  R :   *  T  K  L  W  G  L  *  N  F  H  T  F  I  L  I  L  K  A  A  R  C  V  Q  L  L  L  K  I  L  A  L  N  L  S  I  F  L  Q  G  A  V  Q  M  N  S  L  I  *  *  *   : D  A  Y  W  I  L  V  T  R  L  L  T  A  H  P  L  S  Q  C  M  N  L  M  Q  L  *  M  E  Q  V  S  S  R  :  C  L  G  T  Q  T  L  A  W  T  L  N  G  L  P  K  W  L  N  V  R  N  Q  S  A  Y  F  *  H  H  L  I  I  L  M  G   : V  *  L  M  M  K  L  F  W  K  Y  F  T  C  P  Y  W  *  Y  W  M  K  H  M  L  S  F  L  E  W  S  L  R  *  S  G  *  R  S  M  K  I  *  L  F  F  A  R  S  A  K  E  L  :  W  Y  S  N  P  Q  V  *  L  D  *  E  *  D  M  E  L  F  H  G  V  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24473" stop="24246"/>
                    <exon start="22150" stop="22067"/>
                    <exon start="21968" stop="21814"/>
                    <exon start="21690" stop="21593"/>
                    <exon start="20828" stop="20720"/>
                    <exon start="19657" stop="19500"/>
                    <exon start="19279" stop="19212"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMGVIELCNISSISIVRAKPSSLNEGNRRRRIACMASSVSVQEEESHQQKQGVNGGSFIRTHLLKLSPYQPILPFEVLSTRLGRKPEDIVKLDANENPYGPPPEVNEALGSMKFPYIYPDPESRTLRAALAEDSGLESEYILAGCGADELIDLIMRCILDPGDKIVDCPPTFTMYEFDAAVNGAGVIKVPRNPDFSLDVERITEVVEREKPKCIFLTSPNNPDGSIIDDETLLEILHLPILVILDEAYVEFSGMESKMKWVKKHENLIVLRTFSKRAVVFQSSGLAGLRVGYGAFPRSII</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21668" e_stop="21593"/>
            <exon e_start="20828" e_stop="20720"/>
            <exon e_start="19657" e_stop="19500"/>
            <exon e_start="19261" e_stop="19119"/>
            <exon e_start="18988" e_stop="18848"/>
            <exon e_start="18236" e_stop="17849"/>
            <exon e_start="17679" e_stop="17670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.839" e_score="0.947"/>
          <exon-intron don_prob="0.992" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.820" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="21668" e_stop="21593" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.839">
            <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20828" e_stop="20720" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.959">
            <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19657" e_stop="19500" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.953">
            <gDNA_intron_boundary i_start="19499" i_stop="19262" i_length="238"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19261" e_stop="19119" e_length="143"/>
          </exon>
          <intron i_serial="4" don_prob="0.862" acc_prob="0.990">
            <gDNA_intron_boundary i_start="19118" i_stop="18989" i_length="130"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18988" e_stop="18848" e_length="141"/>
          </exon>
          <intron i_serial="5" don_prob="0.952" acc_prob="0.986">
            <gDNA_intron_boundary i_start="18847" i_stop="18237" i_length="611"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18236" e_stop="17849" e_length="388"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.820">
            <gDNA_intron_boundary i_start="17848" i_stop="17680" i_length="169"/>
          </intron>
          <exon e_serial="7" e_score="0.800">
            <gDNA_exon_boundary e_start="17679" e_stop="17670" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21668" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19500"/>
              <exon start="19261" stop="19119"/>
              <exon start="18988" stop="18848"/>
              <exon start="18236" stop="17849"/>
              <exon start="17679" stop="17670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317571" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG : TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG : TATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATCTGATTGTTCTTCGCACGTTCAGCAAAAGAGCTG : GTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGAATTCCTTTGGCGAGCAAAGCAACCATATAATGTGTCTGTTGCTGCTGAAGTTGCTGCTTGTGCTGCTTTAAAGAACCCCACGTATCTGGAG : AATGTGAAAGTGGCACTGGTGCAAGAAAGGGAGAGACTATTTAATCTCTTGAAAGAAGTCCCGTTTCTTGATCCATACCCTAGCTATTCTAATTTCATTCTCTGTAAAGTAACGTCTGGAATGGATGCTAAGAAATTGAAG : GAAGACCTTGCGACTATGGGAGTGATGATCCGTCACTACAACAGCAAGGAGTTGAAGGGATATGTCCGTGTCTCTGTAGGCAAGCCCGAGCACACCGAGGCATTGATGAAATGCCTCAAGCACTTCTATTGATCTTGCTTTGGGTCGGTACGACAAAATCTGAAGTGTCTTGTGTTCTCATGCTATCATTCTTCAGAAATAAGTCTTTGTATGGAAATGAGGAGTCACAGAGTGTTCTTCAAGTGTACATTATGTTGAAAAAATGGCCATACAATGGCATTTGTAGTTTTATACCTTTAGACTTGGTCTTTTTGACCCTTGATTGCAAAAAATTCATATTGTAATTCATAAAAGGGTTGGACTCATTTGAAGAAATAATTTAGTTTTT : CAAGAAAAAG</gDNA_template>
            <first_frame> K  I  V  D  C  P  P  T  F  T  M  Y  E  F  D  A  A  V  N  G  A  G  V  I  K   : V  P  R  N  P  D  F  S  L  D  V  E  R  I  T  E  V  V  E  R  E  K  P  K  C  I  F  L  T  S  P  N  N  P  D  G  S :   I  I  D  D  E  T  L  L  E  I  L  H  L  P  I  L  V  I  L  D  E  A  Y  V  E  F  S  G  M  E  S  K  M  K  W  V  K  K  H  E  N  L  I  V  L  R  T  F  S  K  R  A   : G  L  A  G  L  R  V  G  Y  G  A  F  P  R  S  I  I  E  F  L  W  R  A  K  Q  P  Y  N  V  S  V  A  A  E  V  A  A  C  A  A  L  K  N  P  T  Y  L  E  :  N  V  K  V  A  L  V  Q  E  R  E  R  L  F  N  L  L  K  E  V  P  F  L  D  P  Y  P  S  Y  S  N  F  I  L  C  K  V  T  S  G  M  D  A  K  K  L  K  :  E  D  L  A  T  M  G  V  M  I  R  H  Y  N  S  K  E  L  K  G  Y  V  R  V  S  V  G  K  P  E  H  T  E  A  L  M  K  C  L  K  H  F  Y  *  S  C  F  G  S  V  R  Q  N  L  K  C  L  V  F  S  C  Y  H  S  S  E  I  S  L  C  M  E  M  R  S  H  R  V  F  F  K  C  T  L  C  *  K  N  G  H  T  M  A  F  V  V  L  Y  L  *  T  W  S  F  *  P  L  I  A  K  N  S  Y  C  N  S  *  K  G  W  T  H  L  K  K  *  F  S  F   : S  R  K   </first_frame>
            <second_frame>  R  L  L  T  A  H  P  L  S  Q  C  M  N  L  M  Q  L  *  M  E  Q  V  S  S  R  :  C  L  G  T  Q  T  L  A  W  T  L  N  G  L  P  K  W  L  N  V  R  N  Q  S  A  Y  F  *  H  H  L  I  I  L  M  G   : V  *  L  M  M  K  L  F  W  K  Y  F  T  C  P  Y  W  *  Y  W  M  K  H  M  L  S  F  L  E  W  S  L  R  *  S  G  *  R  S  M  K  I  *  L  F  F  A  R  S  A  K  E  L  :  V  *  L  D  *  E  *  D  M  E  L  F  H  G  V  L  L  N  S  F  G  E  Q  S  N  H  I  M  C  L  L  L  L  K  L  L  L  V  L  L  *  R  T  P  R  I  W  R :   M  *  K  W  H  W  C  K  K  G  R  D  Y  L  I  S  *  K  K  S  R  F  L  I  H  T  L  A  I  L  I  S  F  S  V  K  *  R  L  E  W  M  L  R  N  *  R :   K  T  L  R  L  W  E  *  *  S  V  T  T  T  A  R  S  *  R  D  M  S  V  S  L  *  A  S  P  S  T  P  R  H  *  *  N  A  S  S  T  S  I  D  L  A  L  G  R  Y  D  K  I  *  S  V  L  C  S  H  A  I  I  L  Q  K  *  V  F  V  W  K  *  G  V  T  E  C  S  S  S  V  H  Y  V  E  K  M  A  I  Q  W  H  L  *  F  Y  T  F  R  L  G  L  F  D  P  *  L  Q  K  I  H  I  V  I  H  K  R  V  G  L  I  *  R  N  N  L  V  F  :  Q  E  K  </second_frame>
            <third_frame>   D  C  *  L  P  T  H  F  H  N  V  *  I  *  C  S  C  K  W  S  R  C  H  Q  G :   A  *  E  P  R  L  *  P  G  R  *  T  D  Y  R  S  G  *  T  *  E  T  K  V  H  I  S  D  I  T  *  *  S  *  W  E  :  Y  N  *  *  *  N  S  F  G  N  T  S  P  A  H  I  G  N  I  G  *  S  I  C  *  V  F  W  N  G  V  *  D  E  V  G  E  E  A  *  K  S  D  C  S  S  H  V  Q  Q  K  S  W :   F  S  W  T  K  S  R  I  W  S  F  S  T  E  Y  Y  *  I  P  L  A  S  K  A  T  I  *  C  V  C  C  C  *  S  C  C  L  C  C  F  K  E  P  H  V  S  G   : E  C  E  S  G  T  G  A  R  K  G  E  T  I  *  S  L  E  R  S  P  V  S  *  S  I  P  *  L  F  *  F  H  S  L  *  S  N  V  W  N  G  C  *  E  I  E   : G  R  P  C  D  Y  G  S  D  D  P  S  L  Q  Q  Q  G  V  E  G  I  C  P  C  L  C  R  Q  A  R  A  H  R  G  I  D  E  M  P  Q  A  L  L  L  I  L  L  W  V  G  T  T  K  S  E  V  S  C  V  L  M  L  S  F  F  R  N  K  S  L  Y  G  N  E  E  S  Q  S  V  L  Q  V  Y  I  M  L  K  K  W  P  Y  N  G  I  C  S  F  I  P  L  D  L  V  F  L  T  L  D  C  K  K  F  I  L  *  F  I  K  G  L  D  S  F  E  E  I  I  *  F  F :   K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21668" stop="21593"/>
                    <exon start="20828" stop="20720"/>
                    <exon start="19657" stop="19500"/>
                    <exon start="19261" stop="19119"/>
                    <exon start="18988" stop="18848"/>
                    <exon start="18236" stop="18105"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIVDCPPTFTMYEFDAAVNGAGVIKVPRNPDFSLDVERITEVVEREKPKCIFLTSPNNPDGSIIDDETLLEILHLPILVILDEAYVEFSGMESKMKWVKKHENLIVLRTFSKRAGLAGLRVGYGAFPRSIIEFLWRAKQPYNVSVAAEVAACAALKNPTYLENVKVALVQERERLFNLLKEVPFLDPYPSYSNFILCKVTSGMDAKKLKEDLATMGVMIRHYNSKELKGYVRVSVGKPEHTEALMKCLKHFY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="31127" PGL_stop="26827"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31127" e_stop="30801"/>
            <exon e_start="28065" e_stop="27901"/>
            <exon e_start="27135" e_stop="26827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.790" e_score="0.997"/>
          <exon-intron don_prob="0.969" acc_prob="0.876" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="31127" e_stop="30801" e_length="327"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.790">
            <gDNA_intron_boundary i_start="30800" i_stop="28066" i_length="2735"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28065" e_stop="27901" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.876">
            <gDNA_intron_boundary i_start="27900" i_stop="27136" i_length="765"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="27135" e_stop="26827" e_length="309"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31127" stop="30801"/>
              <exon start="28065" stop="27901"/>
              <exon start="27135" stop="26827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGATTGAATTTTTGTTGAATTGGGGATCGAATTTGATGGAATGGACCTTCTGTGTAAAGTCTATGGCGGAACCTCTGATGAAGAAGACGACAATGGTGGAATTCACCTTCAAAGACCCATTTTGCCACAGCCGAAACGAGCCAAATTCGAGAATTTTCATCAAGTTGGCAATCATGTGCCACTCTACAAGCCTAATCCAAGTACCAATCTCCCAGCGCAAGCTTCCCTTCCAGGAAGATACATTTCTAAGAGAGAGAGAGCTGCCATGGATTCAGTGGAGAAAGTTCCAGACCTCAGCACAACGGTTTCCCCTAACAGTTCACCAG : TTTTAGGGAGCATTTTGGATTCAGTTCTGCCACATAATATTTTGTCAGCTTTGAGAGATCAAACTAAAATCTACGGGAACATGATCCACACGCCAGAAAGACTGTCTGTAGTTCTAGATGGACACAAAAGATCAGTTAATGCTGTACAGTGGTCTACAAGTCATG : CTCACCTTTTAGTATCTGCCGGAATGGATCAAACTGTCTGTATATGGAATGTGTGGAGCAGAGATCAGAAGAAAGCACGTGTACTTAATTGTCACAAAGCGGCTGTCAAAGATGTGAAGTGGTCGCCATATGGTCTATTTGTGCTCTCTTGTGGATATGACTGCACATCAAGGTTGATTGATGTTGAAAAAGGAACTGAAACCCAGGTTTTCAATGAGGATCAAGTTGTTGGAGTGGTAAAATTCCATCCAGATAATTATAATCTCTTTCTCTCTGGAGGTTCGAAAGGTCACCTTAAAATATGGGATA</gDNA_template>
            <first_frame> S  I  E  F  L  L  N  W  G  S  N  L  M  E  W  T  F  C  V  K  S  M  A  E  P  L  M  K  K  T  T  M  V  E  F  T  F  K  D  P  F  C  H  S  R  N  E  P  N  S  R  I  F  I  K  L  A  I  M  C  H  S  T  S  L  I  Q  V  P  I  S  Q  R  K  L  P  F  Q  E  D  T  F  L  R  E  R  E  L  P  W  I  Q  W  R  K  F  Q  T  S  A  Q  R  F  P  L  T  V  H  Q  :  F  *  G  A  F  W  I  Q  F  C  H  I  I  F  C  Q  L  *  E  I  K  L  K  S  T  G  T  *  S  T  R  Q  K  D  C  L  *  F  *  M  D  T  K  D  Q  L  M  L  Y  S  G  L  Q  V  M  :  L  T  F  *  Y  L  P  E  W  I  K  L  S  V  Y  G  M  C  G  A  E  I  R  R  K  H  V  Y  L  I  V  T  K  R  L  S  K  M  *  S  G  R  H  M  V  Y  L  C  S  L  V  D  M  T  A  H  Q  G  *  L  M  L  K  K  E  L  K  P  R  F  S  M  R  I  K  L  L  E  W  *  N  S  I  Q  I  I  I  I  S  F  S  L  E  V  R  K  V  T  L  K  Y  G  I </first_frame>
            <second_frame>  R  L  N  F  C  *  I  G  D  R  I  *  W  N  G  P  S  V  *  S  L  W  R  N  L  *  *  R  R  R  Q  W  W  N  S  P  S  K  T  H  F  A  T  A  E  T  S  Q  I  R  E  F  S  S  S  W  Q  S  C  A  T  L  Q  A  *  S  K  Y  Q  S  P  S  A  S  F  P  S  R  K  I  H  F  *  E  R  E  S  C  H  G  F  S  G  E  S  S  R  P  Q  H  N  G  F  P  *  Q  F  T  S :   F  R  E  H  F  G  F  S  S  A  T  *  Y  F  V  S  F  E  R  S  N  *  N  L  R  E  H  D  P  H  A  R  K  T  V  C  S  S  R  W  T  Q  K  I  S  *  C  C  T  V  V  Y  K  S  C :   S  P  F  S  I  C  R  N  G  S  N  C  L  Y  M  E  C  V  E  Q  R  S  E  E  S  T  C  T  *  L  S  Q  S  G  C  Q  R  C  E  V  V  A  I  W  S  I  C  A  L  L  W  I  *  L  H  I  K  V  D  *  C  *  K  R  N  *  N  P  G  F  Q  *  G  S  S  C  W  S  G  K  I  P  S  R  *  L  *  S  L  S  L  W  R  F  E  R  S  P  *  N  M  G   </second_frame>
            <third_frame>   D  *  I  F  V  E  L  G  I  E  F  D  G  M  D  L  L  C  K  V  Y  G  G  T  S  D  E  E  D  D  N  G  G  I  H  L  Q  R  P  I  L  P  Q  P  K  R  A  K  F  E  N  F  H  Q  V  G  N  H  V  P  L  Y  K  P  N  P  S  T  N  L  P  A  Q  A  S  L  P  G  R  Y  I  S  K  R  E  R  A  A  M  D  S  V  E  K  V  P  D  L  S  T  T  V  S  P  N  S  S  P   : V  L  G  S  I  L  D  S  V  L  P  H  N  I  L  S  A  L  R  D  Q  T  K  I  Y  G  N  M  I  H  T  P  E  R  L  S  V  V  L  D  G  H  K  R  S  V  N  A  V  Q  W  S  T  S  H   : A  H  L  L  V  S  A  G  M  D  Q  T  V  C  I  W  N  V  W  S  R  D  Q  K  K  A  R  V  L  N  C  H  K  A  A  V  K  D  V  K  W  S  P  Y  G  L  F  V  L  S  C  G  Y  D  C  T  S  R  L  I  D  V  E  K  G  T  E  T  Q  V  F  N  E  D  Q  V  V  G  V  V  K  F  H  P  D  N  Y  N  L  F  L  S  G  G  S  K  G  H  L  K  I  W  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31119" stop="30801"/>
                    <exon start="28065" stop="27901"/>
                    <exon start="27135" stop="26828"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFVELGIEFDGMDLLCKVYGGTSDEEDDNGGIHLQRPILPQPKRAKFENFHQVGNHVPLYKPNPSTNLPAQASLPGRYISKRERAAMDSVEKVPDLSTTVSPNSSPVLGSILDSVLPHNILSALRDQTKIYGNMIHTPERLSVVLDGHKRSVNAVQWSTSHAHLLVSAGMDQTVCIWNVWSRDQKKARVLNCHKAAVKDVKWSPYGLFVLSCGYDCTSRLIDVEKGTETQVFNEDQVVGVVKFHPDNYNLFLSGGSKGHLKIWD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="37655" PGL_stop="37126"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37655" e_stop="37126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37655" e_stop="37126" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37655" stop="37126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342747" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATTTTAGCACTTTTTTGAGTTGTTAGGTTGTAAATTTATAGTTTGTAAATATTGAAATGGAGTAGGTGGAGCTAGAAATTTAAAAGTTTTCTTTTTTATAGCTGTGGTGTACTTGCCAACTTGAGTGCTACCTCCCATCGACAACAGGTACATGTAGCTTCGTGTATTGTCTTTACTAGGATTTGAACCTGAAACCTCGCGAGTAGTAGGCCACACACCCTTGGGTACAGCTAGAAAATGAAGTTAATGGAGTTTGAATTTGACACCGAGTATATAACTTGTTTTATGAGTACATGGCTTGATTTACGAAATATTGGAAGTGCTCCTTGGAGAAGGTCCACGTTGATGCATTATGAAGTAGCTCTAGCTTCTTCTTCTTCTTCTTTTTTTCCTTTTTCAAATATAGCTATAATGAATTATGACAAGTTGATGTTGAATCAAATGATGTGCACTACCCTAGCTAAGAATAACTTGTAGCAGCTATAACATCCTACTTTATGAAAGAGCAAGAAAAGTTTGGACTATGGA</gDNA_template>
            <first_frame> G  F  *  H  F  F  E  L  L  G  C  K  F  I  V  C  K  Y  *  N  G  V  G  G  A  R  N  L  K  V  F  F  F  I  A  V  V  Y  L  P  T  *  V  L  P  P  I  D  N  R  Y  M  *  L  R  V  L  S  L  L  G  F  E  P  E  T  S  R  V  V  G  H  T  P  L  G  T  A  R  K  *  S  *  W  S  L  N  L  T  P  S  I  *  L  V  L  *  V  H  G  L  I  Y  E  I  L  E  V  L  L  G  E  G  P  R  *  C  I  M  K  *  L  *  L  L  L  L  L  L  F  F  L  F  Q  I  *  L  *  *  I  M  T  S  *  C  *  I  K  *  C  A  L  P  *  L  R  I  T  C  S  S  Y  N  I  L  L  Y  E  R  A  R  K  V  W  T  M   </first_frame>
            <second_frame>  D  F  S  T  F  L  S  C  *  V  V  N  L  *  F  V  N  I  E  M  E  *  V  E  L  E  I  *  K  F  S  F  L  *  L  W  C  T  C  Q  L  E  C  Y  L  P  S  T  T  G  T  C  S  F  V  Y  C  L  Y  *  D  L  N  L  K  P  R  E  *  *  A  T  H  P  W  V  Q  L  E  N  E  V  N  G  V  *  I  *  H  R  V  Y  N  L  F  Y  E  Y  M  A  *  F  T  K  Y  W  K  C  S  L  E  K  V  H  V  D  A  L  *  S  S  S  S  F  F  F  F  F  F  F  S  F  F  K  Y  S  Y  N  E  L  *  Q  V  D  V  E  S  N  D  V  H  Y  P  S  *  E  *  L  V  A  A  I  T  S  Y  F  M  K  E  Q  E  K  F  G  L  W  </second_frame>
            <third_frame>   I  L  A  L  F  *  V  V  R  L  *  I  Y  S  L  *  I  L  K  W  S  R  W  S  *  K  F  K  S  F  L  F  Y  S  C  G  V  L  A  N  L  S  A  T  S  H  R  Q  Q  V  H  V  A  S  C  I  V  F  T  R  I  *  T  *  N  L  A  S  S  R  P  H  T  L  G  Y  S  *  K  M  K  L  M  E  F  E  F  D  T  E  Y  I  T  C  F  M  S  T  W  L  D  L  R  N  I  G  S  A  P  W  R  R  S  T  L  M  H  Y  E  V  A  L  A  S  S  S  S  S  F  F  P  F  S  N  I  A  I  M  N  Y  D  K  L  M  L  N  Q  M  M  C  T  T  L  A  K  N  N  L  *  Q  L  *  H  P  T  L  *  K  S  K  K  S  L  D  Y  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37419" stop="37177"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMKLMEFEFDTEYITCFMSTWLDLRNIGSAPWRRSTLMHYEVALASSSSSFFPFSNIAIMNYDKLMLNQMMCTTLAKNNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="66821" PGL_stop="71689"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66821" e_stop="66935"/>
            <exon e_start="67096" e_stop="67277"/>
            <exon e_start="68092" e_stop="68199"/>
            <exon e_start="69164" e_stop="69253"/>
            <exon e_start="69379" e_stop="69463"/>
            <exon e_start="70447" e_stop="70541"/>
            <exon e_start="71297" e_stop="71689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.983"/>
          <exon-intron don_prob="0.933" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.764" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="66821" e_stop="66935" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67096" e_stop="67277" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.933" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68092" e_stop="68199" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.993">
            <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69164" e_stop="69253" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69379" e_stop="69463" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70447" e_stop="70541" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.764" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="71297" e_stop="71689" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66821" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCCTTGCACAATTGAAGTGTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG : ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT : GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG : GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA : GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG : GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT : GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCAACGAATTTCTGCTGCCATCACACACTAGACAAATTATACAGAAGATGAATCAATTTCTTTGGGGGGACTCCTTGTGGAATTGCAATATTGTAGGAAAGATAAATGTTGGAACTGATATTATTATACAATCTTTAATTTCCTCT</gDNA_template>
            <first_frame> V  L  A  Q  L  K  C  S  S  S  H  Q  K  L  S  L  S  S  L  A  K  A  L  C  E  K  L  R  F  V  S  L  K  S  L  S  N  V   : D  L  *  V  *  W  K  C  F  G  C  D  G  W  E  K  L  F  R  Y  C  E  *  *  A  F  W  S  T  A  A  D  N  R  Y  *  F  P  E  D  L  *  N  T  *  Q  A  F  Y  W  T  F  W  L  G  Y  *  Y  S  N  T  :  A  S  T  P  H  V  P  S  Q  A  I  *  A  *  R  R  *  G  Y  E  A  R  D  L  C  Q  P  C  I  C  Y  A  L  *  E  K  :  V  W  S  I  L  V  P  T  C  N  C  W  I  R  R  R  *  Q  A  F  Y  L  H  N  G  L  Y  W  S  K  :  G  A  R  K  R  F  C  C  F  W  H  C  I  *  I  T  L  R  C  L  *  G  H  V  Q  A  R  H   : G  T  G  R  I  V  *  D  H  L  S  G  T  V  V  I  C  R  P  *  L  F  K  W  L  G  R  T  C  L  C  C  :  D  T  N  *  S  D  R  E  D  L  E  G  K  D  G  L  N  T  C  G  V  L  Y  L  F  T  I  A  F  H  W  D  D  I  S  L  V  L  M  N  T  Q  H  F  I  F  D  V  I  A  S  T  S  L  Q  D  C  Y  L  I  D  S  V  V  C  H  *  W  M  L  T  F  *  L  V  Y  N  P  L  F  E  H  P  N  E  F  L  L  P  S  H  T  R  Q  I  I  Q  K  M  N  Q  F  L  W  G  D  S  L  W  N  C  N  I  V  G  K  I  N  V  G  T  D  I  I  I  Q  S  L  I  S  S </first_frame>
            <second_frame>  S  L  H  N  *  S  V  L  Q  A  I  K  N  S  V  S  L  H  *  Q  K  H  F  A  K  N  F  D  S  F  L  *  N  H  S  P  M  S  :  I  F  E  Y  N  G  S  A  L  V  A  M  V  G  K  N  C  F  A  I  A  S  D  R  R  F  G  V  Q  L  Q  T  I  A  T  D  F  Q  R  I  Y  K  I  H  D  K  L  F  I  G  L  S  G  L  A  T  D  T  Q  T  L :   H  Q  R  L  M  F  R  H  K  L  Y  E  L  R  E  D  R  D  M  K  P  E  T  F  A  S  L  V  S  A  M  L  Y  E  K  R :   F  G  P  Y  L  C  Q  P  V  I  A  G  L  G  E  D  D  K  P  F  I  C  T  M  D  S  I  G  A  K :   E  L  A  K  D  F  V  V  S  G  T  A  S  E  S  L  Y  G  A  C  E  A  M  Y  K  P  D  M  :  G  P  E  E  L  F  E  T  I  S  Q  A  L  L  S  S  V  D  R  D  C  L  S  G  W  G  G  H  V  Y  V  V :   T  P  T  E  V  T  E  R  I  L  K  G  R  M  D  *  T  L  V  G  C  Y  T  C  S  L  L  H  F  T  G  M  T  F  H  L  F  *  *  I  L  N  I  S  Y  L  M  L  S  H  R  L  L  S  K  I  V  I  *  *  I  Q  L  S  V  T  N  G  C  *  H  S  S  *  F  T  I  L  Y  L  S  I  P  T  N  F  C  C  H  H  T  L  D  K  L  Y  R  R  *  I  N  F  F  G  G  T  P  C  G  I  A  I  L  *  E  R  *  M  L  E  L  I  L  L  Y  N  L  *  F  P   </second_frame>
            <third_frame>   P  C  T  I  E  V  F  F  K  P  S  K  T  Q  S  L  F  I  S  K  S  T  L  R  K  T  S  I  R  F  S  K  I  T  L  Q  C  R :   S  L  S  I  M  E  V  L  W  L  R  W  L  G  K  T  V  S  L  L  R  V  I  G  V  L  E  Y  S  C  R  Q  S  L  L  I  S  R  G  F  I  K  Y  M  T  S  F  L  L  D  F  L  A  W  L  L  I  L  K  H   : C  I  N  A  S  C  S  V  T  S  Y  M  S  L  E  K  I  G  I  *  S  P  R  P  L  P  A  L  Y  L  L  C  F  M  R  K   : G  L  V  H  T  C  A  N  L  *  L  L  D  *  E  K  M  T  S  L  L  F  A  Q  W  T  L  L  E  Q   : R  S  S  Q  K  I  L  L  F  L  A  L  H  L  N  H  F  T  V  L  V  R  P  C  T  S  P  T  W :   D  R  K  N  C  L  R  P  S  L  R  H  C  C  H  L  *  T  V  T  V  *  V  V  G  E  D  M  F  M  L   : *  H  Q  L  K  *  Q  R  G  S  *  R  E  G  W  T  E  H  L  W  G  A  I  L  V  H  Y  C  I  S  L  G  *  H  F  T  C  F  D  E  Y  S  T  F  H  I  *  C  Y  R  I  D  F  S  P  R  L  L  F  N  R  F  S  C  L  S  L  M  D  V  N  I  L  V  S  L  Q  S  S  I  *  A  S  Q  R  I  S  A  A  I  T  H  *  T  N  Y  T  E  D  E  S  I  S  L  G  G  L  L  V  E  L  Q  Y  C  R  K  D  K  C  W  N  *  Y  Y  Y  T  I  F  N  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66918" stop="66935"/>
                    <exon start="67096" stop="67277"/>
                    <exon start="68092" stop="68199"/>
                    <exon start="69164" stop="69253"/>
                    <exon start="69379" stop="69463"/>
                    <exon start="70447" stop="70541"/>
                    <exon start="71297" stop="71345"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHSPMSIFEYNGSALVAMVGKNCFAIASDRRFGVQLQTIATDFQRIYKIHDKLFIGLSGLATDTQTLHQRLMFRHKLYELREDRDMKPETFASLVSAMLYEKRFGPYLCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMYKPDMGPEELFETISQALLSSVDRDCLSGWGGHVYVVTPTEVTERILKGRMD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="75090" PGL_stop="82870"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75090" e_stop="75247"/>
            <exon e_start="76622" e_stop="76664"/>
            <exon e_start="76757" e_stop="76991"/>
            <exon e_start="77723" e_stop="77788"/>
            <exon e_start="78367" e_stop="78423"/>
            <exon e_start="79623" e_stop="79783"/>
            <exon e_start="79859" e_stop="79988"/>
            <exon e_start="80836" e_stop="80997"/>
            <exon e_start="81734" e_stop="81861"/>
            <exon e_start="82244" e_stop="82343"/>
            <exon e_start="82469" e_stop="82870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.176" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.596" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75090" e_stop="75247" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75248" i_stop="76621" i_length="1374"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76622" e_stop="76664" e_length="43"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="76665" i_stop="76756" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76757" e_stop="76991" e_length="235"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76992" i_stop="77722" i_length="731"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77723" e_stop="77788" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.176" acc_prob="0.890">
            <gDNA_intron_boundary i_start="77789" i_stop="78366" i_length="578"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78367" e_stop="78423" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.880" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78424" i_stop="79622" i_length="1199"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79623" e_stop="79783" e_length="161"/>
          </exon>
          <intron i_serial="6" don_prob="0.965" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79784" i_stop="79858" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="79859" e_stop="79988" e_length="130"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.986">
            <gDNA_intron_boundary i_start="79989" i_stop="80835" i_length="847"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="80836" e_stop="80997" e_length="162"/>
          </exon>
          <intron i_serial="8" don_prob="0.903" acc_prob="0.997">
            <gDNA_intron_boundary i_start="80998" i_stop="81733" i_length="736"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="81734" e_stop="81861" e_length="128"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.857">
            <gDNA_intron_boundary i_start="81862" i_stop="82243" i_length="382"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="82244" e_stop="82343" e_length="100"/>
          </exon>
          <intron i_serial="10" don_prob="0.596" acc_prob="0.981">
            <gDNA_intron_boundary i_start="82344" i_stop="82468" i_length="125"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="82469" e_stop="82870" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75090" stop="75247"/>
              <exon start="76622" stop="76664"/>
              <exon start="76757" stop="76991"/>
              <exon start="77723" stop="77788"/>
              <exon start="78367" stop="78423"/>
              <exon start="79623" stop="79783"/>
              <exon start="79859" stop="79988"/>
              <exon start="80836" stop="80997"/>
              <exon start="81734" stop="81861"/>
              <exon start="82244" stop="82343"/>
              <exon start="82469" stop="82870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCGGTGGAAAATTGTTCGACGTGGAAGACGATACGTTCGATGGCGAAATAGCAGAAAACCTAAAAATAAGGAAATTGAGAGCAAAAATCTGAAATTATAGTCCATTTCTATGGTCATGTCAATGTCCCTGCGACTTTGTTGCAGACCTTCAATTTCT : GGTTTCAAGAATAAAAGAGATTTGTTGGGCTTAGAATTGGCAG : CTTATCAATCAAGTAAGACAATGGGGAAATGGTTAAGTGGAGTGAAGAAGTTCATTCCCTTTGAGGGATATGTTAAGTCTGTGAAAACGGCAGCACGAATATCATTTCCAAAGATCTCAGCAGACTGTCAAGATAAAGAGCCTTCAAATTTTTTGAGTCACAAGAAGATGGTTCCTTATTCGAACCCCCCTAGCACGGAAGATGTGGATAGTTTGTATGAATTCTTTGATAGAAG : TACCAAGCTTGTTGTATTGACGGGAGCTGGCATGAGCACAGAGAGTGGAATTCCGGATTACAGAAG : CCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAGGTGATTTGAAG : GAGTTTCTACGATCAATCAAGGCTCGAAGGCGTTATTGGGCACGGAGCTATGCTGGCTGGCGACGTTTCACTGCTGCTCAACCTAGTACAGGTCATATAGCTCTATCATCTCTTGAGAAAGCAGGCCATATAAGTTTTATGATTACACAGAATGTGGACAG : GCTGCATCACCGAGCTGGAAGCAATCCTCTTGAATTGCATGGGACTGTCTACATTGTTGCCTGTACAAATTGTGGTTTTTCTCTACCTCGAGATCTATTTCAAGATCAAGTGAAGGCTCATAATCCCAAG : TGGGCAGAAGCTATTGAAAATTTGGACTATGACAGTCGATCAGACAAGAGTTTTGGAATGAAACAAAGGCCTGATGGGGATATTGAGATTGATGAGAAGTTCTGGGAAGAGGATTTCTACATTCCTGAATGTCAGAGCTGCCAAGGAGTTCTGAAACCTGAT : GTTGTCTTCTTTGGGGATAATGTCCCCAAATCTAGGGCAGATGCTGCTATGGAAGCTGCAAAGGGATGTGATGCCTTCCTTGTACTTGGTTCATCTTTGATGACCATGTCCGCCTTCCGGCTTATCAA : AGCTGCACGTGAGGCAGGTGCTGCTACTGCAATTATAAATATTGGTGCTACACGAGCTGACGATATTGTACCTTTGAAAATTAGTGCTCGAGTTGGAGAG : ATACTTCCAAGATTGCTCAATGTTGGATCATTAAGTATCCCTGCTCCCTAGTTCCTGATTCAGAGAACTGTTAATTAATAGCATCCCAGATTCTTTTTCATCAGTTGCTGCAAATGGATTGTACACTTGGTCGGAACGTGCTAGTTCGCCCTGCATCTCACGTGTGGTAAATTCACTAAATTTATCTCGACGTTGTTTGTAATTCTTAAAAATGAACTTCTCAACTACCACACACACTATTTATGTGCGCGTTTGTATTGTCACACAACTCGACTACTTTGAATTTCTGATTTAGTGAGTTGAAGCTGAAATGGTGCGAAAATACACAGAATATTGCTTGGAAATGATGAATTTTAGTATGGCCTTTTGCTTAAAGATTTACATTATGCTTGCATAAAAAAA</gDNA_template>
            <first_frame> S  G  G  K  L  F  D  V  E  D  D  T  F  D  G  E  I  A  E  N  L  K  I  R  K  L  R  A  K  I  *  N  Y  S  P  F  L  W  S  C  Q  C  P  C  D  F  V  A  D  L  Q  F  L :   V  S  R  I  K  E  I  C  W  A  *  N  W  Q  :  L  I  N  Q  V  R  Q  W  G  N  G  *  V  E  *  R  S  S  F  P  L  R  D  M  L  S  L  *  K  R  Q  H  E  Y  H  F  Q  R  S  Q  Q  T  V  K  I  K  S  L  Q  I  F  *  V  T  R  R  W  F  L  I  R  T  P  L  A  R  K  M  W  I  V  C  M  N  S  L  I  E   : V  P  S  L  L  Y  *  R  E  L  A  *  A  Q  R  V  E  F  R  I  T  E   : A  Q  T  E  L  I  V  R  V  S  N  Q  L  P  I  R  *  F  E   : G  V  S  T  I  N  Q  G  S  K  A  L  L  G  T  E  L  C  W  L  A  T  F  H  C  C  S  T  *  Y  R  S  Y  S  S  I  I  S  *  E  S  R  P  Y  K  F  Y  D  Y  T  E  C  G  Q  :  A  A  S  P  S  W  K  Q  S  S  *  I  A  W  D  C  L  H  C  C  L  Y  K  L  W  F  F  S  T  S  R  S  I  S  R  S  S  E  G  S  *  S  Q   : V  G  R  S  Y  *  K  F  G  L  *  Q  S  I  R  Q  E  F  W  N  E  T  K  A  *  W  G  Y  *  D  *  *  E  V  L  G  R  G  F  L  H  S  *  M  S  E  L  P  R  S  S  E  T  *   : C  C  L  L  W  G  *  C  P  Q  I  *  G  R  C  C  Y  G  S  C  K  G  M  *  C  L  P  C  T  W  F  I  F  D  D  H  V  R  L  P  A  Y  Q  :  S  C  T  *  G  R  C  C  Y  C  N  Y  K  Y  W  C  Y  T  S  *  R  Y  C  T  F  E  N  *  C  S  S  W  R   : D  T  S  K  I  A  Q  C  W  I  I  K  Y  P  C  S  L  V  P  D  S  E  N  C  *  L  I  A  S  Q  I  L  F  H  Q  L  L  Q  M  D  C  T  L  G  R  N  V  L  V  R  P  A  S  H  V  W  *  I  H  *  I  Y  L  D  V  V  C  N  S  *  K  *  T  S  Q  L  P  H  T  L  F  M  C  A  F  V  L  S  H  N  S  T  T  L  N  F  *  F  S  E  L  K  L  K  W  C  E  N  T  Q  N  I  A  W  K  *  *  I  L  V  W  P  F  A  *  R  F  T  L  C  L  H  K  K  </first_frame>
            <second_frame>  A  V  E  N  C  S  T  W  K  T  I  R  S  M  A  K  *  Q  K  T  *  K  *  G  N  *  E  Q  K  S  E  I  I  V  H  F  Y  G  H  V  N  V  P  A  T  L  L  Q  T  F  N  F   : W  F  Q  E  *  K  R  F  V  G  L  R  I  G  S :   L  S  I  K  *  D  N  G  E  M  V  K  W  S  E  E  V  H  S  L  *  G  I  C  *  V  C  E  N  G  S  T  N  I  I  S  K  D  L  S  R  L  S  R  *  R  A  F  K  F  F  E  S  Q  E  D  G  S  L  F  E  P  P  *  H  G  R  C  G  *  F  V  *  I  L  *  *  K  :  Y  Q  A  C  C  I  D  G  S  W  H  E  H  R  E  W  N  S  G  L  Q  K  :  P  K  R  S  L  *  Y  G  F  Q  T  N  Y  P  S  G  D  L  K  :  E  F  L  R  S  I  K  A  R  R  R  Y  W  A  R  S  Y  A  G  W  R  R  F  T  A  A  Q  P  S  T  G  H  I  A  L  S  S  L  E  K  A  G  H  I  S  F  M  I  T  Q  N  V  D  R :   L  H  H  R  A  G  S  N  P  L  E  L  H  G  T  V  Y  I  V  A  C  T  N  C  G  F  S  L  P  R  D  L  F  Q  D  Q  V  K  A  H  N  P  K  :  W  A  E  A  I  E  N  L  D  Y  D  S  R  S  D  K  S  F  G  M  K  Q  R  P  D  G  D  I  E  I  D  E  K  F  W  E  E  D  F  Y  I  P  E  C  Q  S  C  Q  G  V  L  K  P  D  :  V  V  F  F  G  D  N  V  P  K  S  R  A  D  A  A  M  E  A  A  K  G  C  D  A  F  L  V  L  G  S  S  L  M  T  M  S  A  F  R  L  I  K :   A  A  R  E  A  G  A  A  T  A  I  I  N  I  G  A  T  R  A  D  D  I  V  P  L  K  I  S  A  R  V  G  E  :  I  L  P  R  L  L  N  V  G  S  L  S  I  P  A  P  *  F  L  I  Q  R  T  V  N  *  *  H  P  R  F  F  F  I  S  C  C  K  W  I  V  H  L  V  G  T  C  *  F  A  L  H  L  T  C  G  K  F  T  K  F  I  S  T  L  F  V  I  L  K  N  E  L  L  N  Y  H  T  H  Y  L  C  A  R  L  Y  C  H  T  T  R  L  L  *  I  S  D  L  V  S  *  S  *  N  G  A  K  I  H  R  I  L  L  G  N  D  E  F  *  Y  G  L  L  L  K  D  L  H  Y  A  C  I  K  K </second_frame>
            <third_frame>   R  W  K  I  V  R  R  G  R  R  Y  V  R  W  R  N  S  R  K  P  K  N  K  E  I  E  S  K  N  L  K  L  *  S  I  S  M  V  M  S  M  S  L  R  L  C  C  R  P  S  I  S  :  G  F  K  N  K  R  D  L  L  G  L  E  L  A   : A  Y  Q  S  S  K  T  M  G  K  W  L  S  G  V  K  K  F  I  P  F  E  G  Y  V  K  S  V  K  T  A  A  R  I  S  F  P  K  I  S  A  D  C  Q  D  K  E  P  S  N  F  L  S  H  K  K  M  V  P  Y  S  N  P  P  S  T  E  D  V  D  S  L  Y  E  F  F  D  R  S :   T  K  L  V  V  L  T  G  A  G  M  S  T  E  S  G  I  P  D  Y  R  S :   P  N  G  A  Y  S  T  G  F  K  P  I  T  H  Q  V  I  *  R :   S  F  Y  D  Q  S  R  L  E  G  V  I  G  H  G  A  M  L  A  G  D  V  S  L  L  L  N  L  V  Q  V  I  *  L  Y  H  L  L  R  K  Q  A  I  *  V  L  *  L  H  R  M  W  T   : G  C  I  T  E  L  E  A  I  L  L  N  C  M  G  L  S  T  L  L  P  V  Q  I  V  V  F  L  Y  L  E  I  Y  F  K  I  K  *  R  L  I  I  P  S :   G  Q  K  L  L  K  I  W  T  M  T  V  D  Q  T  R  V  L  E  *  N  K  G  L  M  G  I  L  R  L  M  R  S  S  G  K  R  I  S  T  F  L  N  V  R  A  A  K  E  F  *  N  L  M :   L  S  S  L  G  I  M  S  P  N  L  G  Q  M  L  L  W  K  L  Q  R  D  V  M  P  S  L  Y  L  V  H  L  *  *  P  C  P  P  S  G  L  S   : K  L  H  V  R  Q  V  L  L  L  Q  L  *  I  L  V  L  H  E  L  T  I  L  Y  L  *  K  L  V  L  E  L  E  R :   Y  F  Q  D  C  S  M  L  D  H  *  V  S  L  L  P  S  S  *  F  R  E  L  L  I  N  S  I  P  D  S  F  S  S  V  A  A  N  G  L  Y  T  W  S  E  R  A  S  S  P  C  I  S  R  V  V  N  S  L  N  L  S  R  R  C  L  *  F  L  K  M  N  F  S  T  T  T  H  T  I  Y  V  R  V  C  I  V  T  Q  L  D  Y  F  E  F  L  I  *  *  V  E  A  E  M  V  R  K  Y  T  E  Y  C  L  E  M  M  N  F  S  M  A  F  C  L  K  I  Y  I  M  L  A  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78385" stop="78423"/>
                    <exon start="79623" stop="79783"/>
                    <exon start="79859" stop="79988"/>
                    <exon start="80836" stop="80997"/>
                    <exon start="81734" stop="81861"/>
                    <exon start="82244" stop="82343"/>
                    <exon start="82469" stop="82519"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YGFQTNYPSGDLKEFLRSIKARRRYWARSYAGWRRFTAAQPSTGHIALSSLEKAGHISFMITQNVDRLHHRAGSNPLELHGTVYIVACTNCGFSLPRDLFQDQVKAHNPKWAEAIENLDYDSRSDKSFGMKQRPDGDIEIDEKFWEEDFYIPECQSCQGVLKPDVVFFGDNVPKSRADAAMEAAKGCDAFLVLGSSLMTMSAFRLIKAAREAGAATAIINIGATRADDIVPLKISARVGEILPRLLNVGSLSIPAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="88024" PGL_stop="90974"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88024" e_stop="88339"/>
            <exon e_start="88705" e_stop="88979"/>
            <exon e_start="89290" e_stop="89981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88024" e_stop="88339" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88705" e_stop="88979" e_length="275"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="88980" i_stop="89289" i_length="310"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="89290" e_stop="89981" e_length="692"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88024" stop="88339"/>
              <exon start="88705" stop="88979"/>
              <exon start="89290" stop="89981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88024" stop="88339"/>
              <exon start="88705" stop="88850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335952" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAACTAACACAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTG : AGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGG : CTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTAAAAACAAATGAAAATTTGTTAATATCAAGTTATCAT</gDNA_template>
            <first_frame> *  N  *  H  K  A  G  A  G  A  A  T  N  R  E  K  K  T  E  E  D  K  R  K  I  Y  R  I  R  I  E  R  K  G  E  V  K  L  R  R  V  R  I  S  K  E  M  N  K  G  A  N  G  N  Q  Q  L  E  L  P  A  G  F  R  F  H  P  T  D  D  E  L  V  Q  H  Y  L  C  R  K  C  A  G  Q  S  I  A  V  S  I  I  A  E  I  D  L  Y  K  F  D  P  W  Q  L  P   : E  K  A  L  Y  G  E  K  E  W  Y  F  F  S  P  R  D  R  K  Y  P  N  G  S  R  P  N  R  A  A  G  T  G  Y  W  K  A  T  G  A  D  K  P  V  G  K  P  K  T  L  G  I  K  K  A  L  V  F  Y  A  G  K  A  P  R  G  I  K  T  N  W  I  M  H  E  Y  R  L  A  N  V  D  R  S  A  G  K  N  N  N  L  R  :  L  D  D  W  V  L  C  R  I  Y  N  K  K  G  T  L  E  K  H  Y  N  V  D  N  K  E  T  T  S  F  G  E  F  D  E  E  I  K  P  K  I  L  P  T  Q  L  A  P  M  P  P  R  P  R  S  T  P  A  N  D  Y  F  Y  F  E  S  S  E  S  M  T  R  M  H  T  T  N  S  S  S  G  S  E  H  V  L  S  P  C  D  K  E  V  Q  S  A  P  K  W  D  E  D  H  R  N  T  L  D  F  Q  L  N  Y  L  D  G  L  L  N  E  P  F  E  T  Q  M  Q  Q  Q  I  C  N  F  D  Q  F  N  N  F  Q  D  M  F  L  Y  M  Q  K  P  Y  *  N  C  I  N  S  L  D  L  N  *  V  *  S  M  T  F  S  L  F  F  G  G  V  G  Q  L  F  I  K  *  F  R  E  V  Q  N  A  S  Q  I  W  W  A  T  A  Q  M  S  L  D  K  H  S  Q  R  V  V  *  K  G  L  L  L  L  *  G  M  *  K  Q  M  K  I  C  *  Y  Q  V  I   </first_frame>
            <second_frame>  E  T  N  T  K  Q  E  Q  E  Q  Q  Q  T  E  R  R  K  Q  R  K  I  R  G  K  F  I  E  F  E  S  R  E  K  G  K  *  S  C  E  E  *  E  F  Q  R  K  *  T  K  E  Q  T  E  I  S  N  W  S  Y  R  R  D  S  D  S  I  R  Q  T  T  N  W  C  S  T  I  S  A  G  N  A  P  D  S  R  L  L  Y  Q  L  *  L  K  L  I  F  T  S  L  I  H  G  S  C  L  :  R  R  L  C  T  V  K  K  S  G  I  F  S  H  Q  G  I  E  N  I  R  T  V  H  G  R  T  E  Q  Q  E  P  V  I  G  R  Q  P  E  L  I  N  R  W  E  N  P  K  P  *  G  *  R  R  H  L  C  S  M  P  E  K  H  P  E  V  *  K  Q  I  G  L  C  T  S  T  A  S  P  T  W  T  A  L  L  A  R  T  I  T  *  G :   L  M  I  G  Y  C  V  E  Y  T  T  R  K  A  H  L  R  S  I  T  M  W  T  T  R  K  L  Q  A  L  E  N  L  M  K  K  *  N  Q  K  Y  C  P  H  N  *  H  R  C  H  H  G  L  D  R  H  Q  Q  T  T  T  F  I  S  S  H  Q  S  R  *  L  E  C  T  R  Q  T  R  A  L  A  Q  S  M  S  C  R  H  V  T  R  R  F  R  A  R  P  N  G  T  K  T  T  E  T  P  L  I  F  S  *  T  I  W  M  V  Y  *  M  N  H  L  K  P  K  C  S  S  K  F  A  T  L  T  S  S  T  I  S  K  T  C  S  Y  T  C  K  N  L  T  K  I  V  *  I  H  W  I  *  I  E  C  D  P  *  H  F  L  C  S  L  V  V  *  V  N  F  L  L  S  S  L  E  K  Y  K  M  L  V  K  F  G  G  L  Q  H  K  *  A  L  I  S  I  A  K  E  S  Y  R  R  A  Y  Y  Y  C  K  V  C  K  N  K  *  K  F  V  N  I  K  L  S  </second_frame>
            <third_frame>   K  L  T  Q  S  R  S  R  S  S  N  K  Q  R  E  E  N  R  G  R  *  E  E  N  L  S  N  S  N  R  E  K  R  G  S  E  V  A  K  S  E  N  F  K  G  N  E  Q  R  S  K  R  K  S  A  I  G  V  T  G  G  I  Q  I  P  S  D  R  R  R  I  G  A  A  L  S  L  Q  E  M  R  R  T  V  D  C  C  I  N  Y  S  *  N  *  S  L  Q  V  *  S  M  A  V  A  * :   E  G  F  V  R  *  K  R  V  V  F  F  L  T  K  G  *  K  I  S  E  R  F  T  A  E  P  S  S  R  N  R  L  L  E  G  N  R  S  *  *  T  G  G  K  T  Q  N  L  R  D  K  E  G  T  C  V  L  C  R  K  S  T  Q  R  Y  K  N  K  L  D  Y  A  R  V  P  P  R  Q  R  G  P  L  C  W  Q  E  Q  *  L  E   : A  *  *  L  G  I  V  S  N  I  Q  Q  E  R  H  T  *  E  A  L  Q  C  G  Q  Q  G  N  Y  K  L  W  R  I  *  *  R  N  K  T  K  N  I  A  H  T  I  S  T  D  A  T  T  A  S  I  D  T  S  K  R  L  L  L  F  R  V  I  R  V  D  D  *  N  A  H  D  K  L  E  L  W  L  R  A  C  L  V  A  M  *  Q  G  G  S  E  R  A  Q  M  G  R  R  P  Q  K  H  P  *  F  S  A  K  L  F  G  W  F  T  K  *  T  I  *  N  P  N  A  A  A  N  L  Q  L  *  P  V  Q  Q  F  P  R  H  V  P  I  H  A  K  T  L  L  K  L  Y  K  F  I  G  S  K  L  S  V  I  H  D  I  F  F  V  L  W  W  C  R  S  T  F  Y  *  V  V  *  R  S  T  K  C  *  S  N  L  V  G  Y  S  T  N  E  P  *  *  A  *  P  K  S  R  I  E  G  L  I  I  I  V  R  Y  V  K  T  N  E  N  L  L  I  S  S  Y  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88033" stop="88339"/>
                    <exon start="88705" stop="88979"/>
                    <exon start="89290" stop="89742"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKAGAGAATNREKKTEEDKRKIYRIRIERKGEVKLRRVRISKEMNKGANGNQQLELPAGFRFHPTDDELVQHYLCRKCAGQSIAVSIIAEIDLYKFDPWQLPEKALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGKPKTLGIKKALVFYAGKAPRGIKTNWIMHEYRLANVDRSAGKNNNLRLDDWVLCRIYNKKGTLEKHYNVDNKETTSFGEFDEEIKPKILPTQLAPMPPRPRSTPANDYFYFESSESMTRMHTTNSSSGSEHVLSPCDKEVQSAPKWDEDHRNTLDFQLNYLDGLLNEPFETQMQQQICNFDQFNNFQDMFLYMQKPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="88985" e_stop="89988"/>
            <exon e_start="90165" e_stop="90171"/>
            <exon e_start="90948" e_stop="90974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.296" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.593"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="88985" e_stop="89988" e_length="1004"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.296">
            <gDNA_intron_boundary i_start="89989" i_stop="90164" i_length="176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90165" e_stop="90171" e_length="7"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="90172" i_stop="90947" i_length="776"/>
          </intron>
          <exon e_serial="3" e_score="0.593">
            <gDNA_exon_boundary e_start="90948" e_stop="90974" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88985" stop="89988"/>
              <exon start="90165" stop="90171"/>
              <exon start="90948" stop="90974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317099" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTAAAAACAAATGAAAATTTGTTAATATCAAGTTATCATTCTTCAA : GAAAAAA : TCGAAAGGAAGTAGACAACAACAAAAA</gDNA_template>
            <first_frame> S  F  F  S  F  N  F  L  F  S  E  M  R  F  K  I  R  V  I  *  Y  G  K  I  T  E  F  T  *  T  I  L  T  S  L  I  V  I  S  P  K  I  Y  N  V  S  N  E  K  *  W  K  I  S  L  *  L  S  T  I  R  C  G  T  H  L  T  Y  S  N  K  *  N  K  M  V  I  I  F  C  N  L  *  V  Q  N  T  I  C  K  L  F  I  D  Y  V  I  *  H  Y  C  S  L  M  I  G  Y  C  V  E  Y  T  T  R  K  A  H  L  R  S  I  T  M  W  T  T  R  K  L  Q  A  L  E  N  L  M  K  K  *  N  Q  K  Y  C  P  H  N  *  H  R  C  H  H  G  L  D  R  H  Q  Q  T  T  T  F  I  S  S  H  Q  S  R  *  L  E  C  T  R  Q  T  R  A  L  A  Q  S  M  S  C  R  H  V  T  R  R  F  R  A  R  P  N  G  T  K  T  T  E  T  P  L  I  F  S  *  T  I  W  M  V  Y  *  M  N  H  L  K  P  K  C  S  S  K  F  A  T  L  T  S  S  T  I  S  K  T  C  S  Y  T  C  K  N  L  T  K  I  V  *  I  H  W  I  *  I  E  C  D  P  *  H  F  L  C  S  L  V  V  *  V  N  F  L  L  S  S  L  E  K  Y  K  M  L  V  K  F  G  G  L  Q  H  K  *  A  L  I  S  I  A  K  E  S  Y  R  R  A  Y  Y  Y  C  K  V  C  K  N  K  *  K  F  V  N  I  K  L  S  F  F  K :   K  K  :  S  K  G  S  R  Q  Q  Q  K </first_frame>
            <second_frame>  P  S  S  A  L  I  F  Y  F  R  R  *  D  S  R  F  E  *  Y  S  M  V  K  L  L  S  L  R  E  L  Y  S  H  L  *  *  *  Y  L  L  R  F  T  M  F  Q  M  K  N  S  G  R  F  H  F  N  Y  Q  Q  L  G  V  A  P  I  *  H  I  V  I  S  K  I  K  W  S  L  Y  S  V  T  Y  E  C  K  I  Q  F  V  N  C  L  L  I  M  *  F  D  I  I  A  A  *  *  L  G  I  V  S  N  I  Q  Q  E  R  H  T  *  E  A  L  Q  C  G  Q  Q  G  N  Y  K  L  W  R  I  *  *  R  N  K  T  K  N  I  A  H  T  I  S  T  D  A  T  T  A  S  I  D  T  S  K  R  L  L  L  F  R  V  I  R  V  D  D  *  N  A  H  D  K  L  E  L  W  L  R  A  C  L  V  A  M  *  Q  G  G  S  E  R  A  Q  M  G  R  R  P  Q  K  H  P  *  F  S  A  K  L  F  G  W  F  T  K  *  T  I  *  N  P  N  A  A  A  N  L  Q  L  *  P  V  Q  Q  F  P  R  H  V  P  I  H  A  K  T  L  L  K  L  Y  K  F  I  G  S  K  L  S  V  I  H  D  I  F  F  V  L  W  W  C  R  S  T  F  Y  *  V  V  *  R  S  T  K  C  *  S  N  L  V  G  Y  S  T  N  E  P  *  *  A  *  P  K  S  R  I  E  G  L  I  I  I  V  R  Y  V  K  T  N  E  N  L  L  I  S  S  Y  H  S  S   : R  K  N :   R  K  E  V  D  N  N  K   </second_frame>
            <third_frame>   L  L  Q  L  *  F  F  I  F  G  D  E  I  Q  D  S  S  N  I  V  W  *  N  Y  *  V  Y  V  N  Y  T  H  I  S  N  S  D  I  S  *  D  L  Q  C  F  K  *  K  I  V  E  D  F  T  L  I  I  N  N  *  V  W  H  P  F  N  I  *  *  *  V  K  *  N  G  H  Y  I  L  *  L  M  S  A  K  Y  N  L  *  I  V  Y  *  L  C  D  L  T  L  L  Q  L  D  D  W  V  L  C  R  I  Y  N  K  K  G  T  L  E  K  H  Y  N  V  D  N  K  E  T  T  S  F  G  E  F  D  E  E  I  K  P  K  I  L  P  T  Q  L  A  P  M  P  P  R  P  R  S  T  P  A  N  D  Y  F  Y  F  E  S  S  E  S  M  T  R  M  H  T  T  N  S  S  S  G  S  E  H  V  L  S  P  C  D  K  E  V  Q  S  A  P  K  W  D  E  D  H  R  N  T  L  D  F  Q  L  N  Y  L  D  G  L  L  N  E  P  F  E  T  Q  M  Q  Q  Q  I  C  N  F  D  Q  F  N  N  F  Q  D  M  F  L  Y  M  Q  K  P  Y  *  N  C  I  N  S  L  D  L  N  *  V  *  S  M  T  F  S  L  F  F  G  G  V  G  Q  L  F  I  K  *  F  R  E  V  Q  N  A  S  Q  I  W  W  A  T  A  Q  M  S  L  D  K  H  S  Q  R  V  V  *  K  G  L  L  L  L  *  G  M  *  K  Q  M  K  I  C  *  Y  Q  V  I  I  L  Q  :  E  K   : I  E  R  K  *  T  T  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89266" stop="89742"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCDLTLLQLDDWVLCRIYNKKGTLEKHYNVDNKETTSFGEFDEEIKPKILPTQLAPMPPRPRSTPANDYFYFESSESMTRMHTTNSSSGSEHVLSPCDKEVQSAPKWDEDHRNTLDFQLNYLDGLLNEPFETQMQQQICNFDQFNNFQDMFLYMQKPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="92791" PGL_stop="92014"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92791" e_stop="92014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="92791" e_stop="92014" e_length="778"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92791" stop="92014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGACTAACAAAACTGCTAATGCTGCTGCCGGTTCCACTGATGCTGATCATGGGAAAAAGCCCCTTATTCAGGAGATATCTTTCAGTCACAAAAGCATGTTACTTGGAGCTGAATGGCATAACATGGGGAAATTGAGAAAAAAAACTTTCAAGAAAAAGCAGGTATGCAAAGGCTTTAACTCTAACATGCATGCATCTAACAAACCAATAAATGTCATGAATCTAGAATCTTGTAAACAAACATCATGTTCATTGTCTAAATCAGCTGATAGGTGTAATACTATGAAAAGAAATCCTAAAGCTAAGTCAGGCTTACTTGGAATCCGAAAGCAAAAGAATGGGAGATATAGTGCTGAAATTAGAGACCCGATTAAGCATAAGCAAGTATGGTTAGGTACTTTCAACACTATTGAAGAGGCTTCACAAGCTTATTTATCCAAGAAGTCTGAGTTTGATATGTTAACTCAGGGATATAAGGAGGATAAACCAAATAATTGTGATCAAACTAAGCCTGAATCATCTGTTGGGGCATCATTGTCTAGTGGGGGTAGAAATAAAAAAATGGATTCTCCCAAAACAACGCGTATCATTGGGGTTCGCAAGAACCAGTGGGGGAAATATACATCTGAGATTATAAACCCCATTAGTAAGAAAAAGATTTGGTTGGGGACTTTTGGCACGTATGAAGAGGCTTCCCTAGCTTATCAATCTAAGAAGCTAGAGTTTCGGGAAATAGTCAAGGCAAAGAAGAAATGTAGTAAGAAAATTCATTTAAATG</gDNA_template>
            <first_frame> S  T  N  K  T  A  N  A  A  A  G  S  T  D  A  D  H  G  K  K  P  L  I  Q  E  I  S  F  S  H  K  S  M  L  L  G  A  E  W  H  N  M  G  K  L  R  K  K  T  F  K  K  K  Q  V  C  K  G  F  N  S  N  M  H  A  S  N  K  P  I  N  V  M  N  L  E  S  C  K  Q  T  S  C  S  L  S  K  S  A  D  R  C  N  T  M  K  R  N  P  K  A  K  S  G  L  L  G  I  R  K  Q  K  N  G  R  Y  S  A  E  I  R  D  P  I  K  H  K  Q  V  W  L  G  T  F  N  T  I  E  E  A  S  Q  A  Y  L  S  K  K  S  E  F  D  M  L  T  Q  G  Y  K  E  D  K  P  N  N  C  D  Q  T  K  P  E  S  S  V  G  A  S  L  S  S  G  G  R  N  K  K  M  D  S  P  K  T  T  R  I  I  G  V  R  K  N  Q  W  G  K  Y  T  S  E  I  I  N  P  I  S  K  K  K  I  W  L  G  T  F  G  T  Y  E  E  A  S  L  A  Y  Q  S  K  K  L  E  F  R  E  I  V  K  A  K  K  K  C  S  K  K  I  H  L  N  </first_frame>
            <second_frame>  R  L  T  K  L  L  M  L  L  P  V  P  L  M  L  I  M  G  K  S  P  L  F  R  R  Y  L  S  V  T  K  A  C  Y  L  E  L  N  G  I  T  W  G  N  *  E  K  K  L  S  R  K  S  R  Y  A  K  A  L  T  L  T  C  M  H  L  T  N  Q  *  M  S  *  I  *  N  L  V  N  K  H  H  V  H  C  L  N  Q  L  I  G  V  I  L  *  K  E  I  L  K  L  S  Q  A  Y  L  E  S  E  S  K  R  M  G  D  I  V  L  K  L  E  T  R  L  S  I  S  K  Y  G  *  V  L  S  T  L  L  K  R  L  H  K  L  I  Y  P  R  S  L  S  L  I  C  *  L  R  D  I  R  R  I  N  Q  I  I  V  I  K  L  S  L  N  H  L  L  G  H  H  C  L  V  G  V  E  I  K  K  W  I  L  P  K  Q  R  V  S  L  G  F  A  R  T  S  G  G  N  I  H  L  R  L  *  T  P  L  V  R  K  R  F  G  W  G  L  L  A  R  M  K  R  L  P  *  L  I  N  L  R  S  *  S  F  G  K  *  S  R  Q  R  R  N  V  V  R  K  F  I  *  M </second_frame>
            <third_frame>   D  *  Q  N  C  *  C  C  C  R  F  H  *  C  *  S  W  E  K  A  P  Y  S  G  D  I  F  Q  S  Q  K  H  V  T  W  S  *  M  A  *  H  G  E  I  E  K  K  N  F  Q  E  K  A  G  M  Q  R  L  *  L  *  H  A  C  I  *  Q  T  N  K  C  H  E  S  R  I  L  *  T  N  I  M  F  I  V  *  I  S  *  *  V  *  Y  Y  E  K  K  S  *  S  *  V  R  L  T  W  N  P  K  A  K  E  W  E  I  *  C  *  N  *  R  P  D  *  A  *  A  S  M  V  R  Y  F  Q  H  Y  *  R  G  F  T  S  L  F  I  Q  E  V  *  V  *  Y  V  N  S  G  I  *  G  G  *  T  K  *  L  *  S  N  *  A  *  I  I  C  W  G  I  I  V  *  W  G  *  K  *  K  N  G  F  S  Q  N  N  A  Y  H  W  G  S  Q  E  P  V  G  E  I  Y  I  *  D  Y  K  P  H  *  *  E  K  D  L  V  G  D  F  W  H  V  *  R  G  F  P  S  L  S  I  *  E  A  R  V  S  G  N  S  Q  G  K  E  E  M  *  *  E  N  S  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92791" stop="92015"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STNKTANAAAGSTDADHGKKPLIQEISFSHKSMLLGAEWHNMGKLRKKTFKKKQVCKGFNSNMHASNKPINVMNLESCKQTSCSLSKSADRCNTMKRNPKAKSGLLGIRKQKNGRYSAEIRDPIKHKQVWLGTFNTIEEASQAYLSKKSEFDMLTQGYKEDKPNNCDQTKPESSVGASLSSGGRNKKMDSPKTTRIIGVRKNQWGKYTSEIINPISKKKIWLGTFGTYEEASLAYQSKKLEFREIVKAKKKCSKKIHLN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="94378" PGL_stop="93919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94378" e_stop="93919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94378" e_stop="93919" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94378" stop="93919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATGAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTAAAATTTCATAC</gDNA_template>
            <first_frame> L  L  *  M  T  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  K  Y  L  N  F  F  Y  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  Y  Y  N  K  R  S  Q  K  I  I  F  V  *  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  S  L  N  I  F  F  K  K  K  L  E  V  T  N  I  N  L  K  L  I  F  *  L  S  L  N  E  G  Y  M  *  A  I  F  *  R  Q  G  Y  M  *  A  V  C  I  T  I  R  A  Y  M  N  H  F  Y  Y  E  G  Y  I  S  S  K  *  Q  S  *  E  V  Y  Q  T  L  F  P  I  F  *  N  F  I  </first_frame>
            <second_frame>  Y  C  R  *  P  I  F  S  S  N  T  K  L  N  Y  N  T  H  K  K  N  I  *  I  F  F  I  *  T  K  E  *  K  K  K  T  K  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  L  Y  E  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  *  I  F  F  L  K  K  N  *  K  *  Q  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  P  F  S  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  T  T  F  I  T  R  D  I  S  A  L  N  D  K  V  E  R  Y  I  R  P  F  S  L  F  F  K  I  S  Y </second_frame>
            <third_frame>   I  V  D  D  Q  F  F  L  R  I  R  N  *  I  T  I  H  T  K  K  I  F  E  F  F  L  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  L  K  L  L  *  *  K  K  S  K  N  N  F  C  M  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  I  P  K  Y  F  F  *  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  T  F  V  K  *  R  V  Y  V  S  H  F  L  T  A  G  V  Y  V  S  R  L  Y  N  D  K  G  I  Y  E  P  L  L  L  R  G  I  Y  Q  L  *  M  T  K  L  R  G  I  S  D  P  F  P  Y  F  L  K  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0049A17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="98732" PGL_stop="107026"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98732" e_stop="98802"/>
            <exon e_start="100156" e_stop="100416"/>
            <exon e_start="100625" e_stop="100710"/>
            <exon e_start="102163" e_stop="102221"/>
            <exon e_start="105812" e_stop="105874"/>
            <exon e_start="106009" e_stop="106083"/>
            <exon e_start="106849" e_stop="106913"/>
            <exon e_start="106994" e_stop="107026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.503" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.996"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.504" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.488" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.655" e_score="0.985"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98732" e_stop="98802" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.503">
            <gDNA_intron_boundary i_start="98803" i_stop="100155" i_length="1353"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="100156" e_stop="100416" e_length="261"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="100417" i_stop="100624" i_length="208"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100625" e_stop="100710" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="100711" i_stop="102162" i_length="1452"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102163" e_stop="102221" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="102222" i_stop="105811" i_length="3590"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105812" e_stop="105874" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.504" acc_prob="0.997">
            <gDNA_intron_boundary i_start="105875" i_stop="106008" i_length="134"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="106009" e_stop="106083" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.488" acc_prob="0.997">
            <gDNA_intron_boundary i_start="106084" i_stop="106848" i_length="765"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="106849" e_stop="106913" e_length="65"/>
          </exon>
          <intron i_serial="7" don_prob="0.944" acc_prob="0.655">
            <gDNA_intron_boundary i_start="106914" i_stop="106993" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="106994" e_stop="107026" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98732" stop="98802"/>
              <exon start="100156" stop="100416"/>
              <exon start="100625" stop="100710"/>
              <exon start="102163" stop="102221"/>
              <exon start="105812" stop="105874"/>
              <exon start="106009" stop="106083"/>
              <exon start="106849" stop="106913"/>
              <exon start="106994" stop="107026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATTTAGATTTTGTAACTCAGACGCGAAATGGCGATGCAGCTGATTGGCAAGAAGAGGTTTACCAACAG : TGAAAATTTCATCATTGTGGTGCCTCCAAATGAGTTTGTCTGAGTCTGGCAGACTGCACAAAGCAACAGCAGACTGCGCAACTGCCAGCCCACAAGATGTCACAGCTTCACCAGCTAACTGATGCTAATGACCTAATGATGAGGCAGCAAATGGGAATGAAAACAGGAGTTTTACAGCAACAGCAGTCAGTTGGATTTCATCATCCGCAAGTGAAGTCGGAAATATCTTCAGCTCAAACCTATCAGGCAGTATCTCCTCAG : GAACAAAACCTACCTGCTTTGGATGAAAGCAAGAACGGTGCAAATGTGTCCTGGAATTTTCAATGAAGCTTTTCCCAATAAATGAG : GTGCGTGAAGCTCTCATGAGGTTTCATAAGTCGCAGGCTCTTCAAGAGCACATTTACTT : ATTTCTCAAGCTCAAATGGGAAATGCAAATGGAGCTAATTGGAAGAAAGAGGTTTACCAAAAG : ATTAAGCCTACGAAGGAGATGTATCTATTAGAGCTCAAGTATTTATACCTAAAGATTGCTTCTAAAGTCTGGCAG : GTACCAAACGACCCCTTAAAGCTAAATCCATTCTACACATATAAAACTCTTCTAATCTATCTCAG : GTCAGAAATTGAGATGGATTGGTATAATTGGAT</gDNA_template>
            <first_frame> L  I  *  I  L  *  L  R  R  E  M  A  M  Q  L  I  G  K  K  R  F  T  N  S :   E  N  F  I  I  V  V  P  P  N  E  F  V  *  V  W  Q  T  A  Q  S  N  S  R  L  R  N  C  Q  P  T  R  C  H  S  F  T  S  *  L  M  L  M  T  *  *  *  G  S  K  W  E  *  K  Q  E  F  Y  S  N  S  S  Q  L  D  F  I  I  R  K  *  S  R  K  Y  L  Q  L  K  P  I  R  Q  Y  L  L  R :   N  K  T  Y  L  L  W  M  K  A  R  T  V  Q  M  C  P  G  I  F  N  E  A  F  P  N  K  *   : G  A  *  S  S  H  E  V  S  *  V  A  G  S  S  R  A  H  L  L  :  I  S  Q  A  Q  M  G  N  A  N  G  A  N  W  K  K  E  V  Y  Q  K  :  I  K  P  T  K  E  M  Y  L  L  E  L  K  Y  L  Y  L  K  I  A  S  K  V  W  Q  :  V  P  N  D  P  L  K  L  N  P  F  Y  T  Y  K  T  L  L  I  Y  L  R :   S  E  I  E  M  D  W  Y  N  W   </first_frame>
            <second_frame>  L  F  R  F  C  N  S  D  A  K  W  R  C  S  *  L  A  R  R  G  L  P  T   : V  K  I  S  S  L  W  C  L  Q  M  S  L  S  E  S  G  R  L  H  K  A  T  A  D  C  A  T  A  S  P  Q  D  V  T  A  S  P  A  N  *  C  *  *  P  N  D  E  A  A  N  G  N  E  N  R  S  F  T  A  T  A  V  S  W  I  S  S  S  A  S  E  V  G  N  I  F  S  S  N  L  S  G  S  I  S  S   : G  T  K  P  T  C  F  G  *  K  Q  E  R  C  K  C  V  L  E  F  S  M  K  L  F  P  I  N  E  :  V  R  E  A  L  M  R  F  H  K  S  Q  A  L  Q  E  H  I  Y  L :   F  L  K  L  K  W  E  M  Q  M  E  L  I  G  R  K  R  F  T  K  R :   L  S  L  R  R  R  C  I  Y  *  S  S  S  I  Y  T  *  R  L  L  L  K  S  G  R :   Y  Q  T  T  P  *  S  *  I  H  S  T  H  I  K  L  F  *  S  I  S   : G  Q  K  L  R  W  I  G  I  I  G  </second_frame>
            <third_frame>   Y  L  D  F  V  T  Q  T  R  N  G  D  A  A  D  W  Q  E  E  V  Y  Q  Q  :  *  K  F  H  H  C  G  A  S  K  *  V  C  L  S  L  A  D  C  T  K  Q  Q  Q  T  A  Q  L  P  A  H  K  M  S  Q  L  H  Q  L  T  D  A  N  D  L  M  M  R  Q  Q  M  G  M  K  T  G  V  L  Q  Q  Q  Q  S  V  G  F  H  H  P  Q  V  K  S  E  I  S  S  A  Q  T  Y  Q  A  V  S  P  Q  :  E  Q  N  L  P  A  L  D  E  S  K  N  G  A  N  V  S  W  N  F  Q  *  S  F  S  Q  *  M  R :   C  V  K  L  S  *  G  F  I  S  R  R  L  F  K  S  T  F  T   : Y  F  S  S  S  N  G  K  C  K  W  S  *  L  E  E  R  G  L  P  K   : D  *  A  Y  E  G  D  V  S  I  R  A  Q  V  F  I  P  K  D  C  F  *  S  L  A   : G  T  K  R  P  L  K  A  K  S  I  L  H  I  *  N  S  S  N  L  S  Q  :  V  R  N  *  D  G  L  V  *  L  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100189" stop="100416"/>
                    <exon start="100625" stop="100690"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCLSLADCTKQQQTAQLPAHKMSQLHQLTDANDLMMRQQMGMKTGVLQQQQSVGFHHPQVKSEISSAQTYQAVSPQEQNLPALDESKNGANVSWNFQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102192" stop="102221"/>
                    <exon start="105812" stop="105874"/>
                    <exon start="106009" stop="106083"/>
                    <exon start="106849" stop="106913"/>
                    <exon start="106994" stop="107024"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAGSSRAHLLISQAQMGNANGANWKKEVYQKIKPTKEMYLLELKYLYLKIASKVWQVPNDPLKLNPFYTYKTLLIYLRSEIEMDWYNW</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100651" stop="100710"/>
                    <exon start="102163" stop="102221"/>
                    <exon start="105812" stop="105874"/>
                    <exon start="106009" stop="106039"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQERCKCVLEFSMKLFPINEVREALMRFHKSQALQEHIYLFLKLKWEMQMELIGRKRFTKRLSLRRRCIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="150314" PGL_stop="155814"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="150314" e_stop="150346"/>
            <exon e_start="150820" e_stop="151166"/>
            <exon e_start="155694" e_stop="155814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="150314" e_stop="150346" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="150347" i_stop="150819" i_length="473"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="150820" e_stop="151166" e_length="347"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="151167" i_stop="155693" i_length="4527"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="155694" e_stop="155814" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150314" stop="150346"/>
              <exon start="150820" stop="151166"/>
              <exon start="155694" stop="155814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCTAGTAGTGGTCAGAATGCCCTTGGTCCAG : GATCGCACAGTATGCAATCCCAAGTCAACAGCCAAGCACAGCAACTTCCTGTACCTATGGTGGCCAATCAAACTCAAACACGACAACCACTGTTGCAGCAAAACCTTCAGAACAATATGGCATCGACTGGGCTGCAAAATTCTGCTAGCTTGGCTCCTTCACTTCCTTCTGTGAGTAATTTGACGCAGGGTACCATGCCAAATGTCGTGGGCCAGAATTCAAATTTGCAAACCATGCAAAACATGCCAAATGTTGGTCAAAACTTGGTAGGAAATGCCATTGGGCAAGGCATGCCTCCTAATATGGTTGCTAATTCTCAGAGGCAGATGCAGGGAAGACAACAACAG : GTTGCTTCTGCACCTGCCCAATCCCTTGCAATTGGTACTCCTGGGATATCAGCCTCACCTTTGCTTGCTGAGTTTACTCCTCTAGATGGTACACATGCCAATGTCTCAGCTGCTGTTCCTG</gDNA_template>
            <first_frame> L  L  V  V  V  R  M  P  L  V  Q  :  D  R  T  V  C  N  P  K  S  T  A  K  H  S  N  F  L  Y  L  W  W  P  I  K  L  K  H  D  N  H  C  C  S  K  T  F  R  T  I  W  H  R  L  G  C  K  I  L  L  A  W  L  L  H  F  L  L  *  V  I  *  R  R  V  P  C  Q  M  S  W  A  R  I  Q  I  C  K  P  C  K  T  C  Q  M  L  V  K  T  W  *  E  M  P  L  G  K  A  C  L  L  I  W  L  L  I  L  R  G  R  C  R  E  D  N  N  R :   L  L  L  H  L  P  N  P  L  Q  L  V  L  L  G  Y  Q  P  H  L  C  L  L  S  L  L  L  *  M  V  H  M  P  M  S  Q  L  L  F  L </first_frame>
            <second_frame>  C  *  *  W  S  E  C  P  W  S  R :   I  A  Q  Y  A  I  P  S  Q  Q  P  S  T  A  T  S  C  T  Y  G  G  Q  S  N  S  N  T  T  T  T  V  A  A  K  P  S  E  Q  Y  G  I  D  W  A  A  K  F  C  *  L  G  S  F  T  S  F  C  E  *  F  D  A  G  Y  H  A  K  C  R  G  P  E  F  K  F  A  N  H  A  K  H  A  K  C  W  S  K  L  G  R  K  C  H  W  A  R  H  A  S  *  Y  G  C  *  F  S  E  A  D  A  G  K  T  T  T   : G  C  F  C  T  C  P  I  P  C  N  W  Y  S  W  D  I  S  L  T  F  A  C  *  V  Y  S  S  R  W  Y  T  C  Q  C  L  S  C  C  S   </second_frame>
            <third_frame>   A  S  S  G  Q  N  A  L  G  P   : G  S  H  S  M  Q  S  Q  V  N  S  Q  A  Q  Q  L  P  V  P  M  V  A  N  Q  T  Q  T  R  Q  P  L  L  Q  Q  N  L  Q  N  N  M  A  S  T  G  L  Q  N  S  A  S  L  A  P  S  L  P  S  V  S  N  L  T  Q  G  T  M  P  N  V  V  G  Q  N  S  N  L  Q  T  M  Q  N  M  P  N  V  G  Q  N  L  V  G  N  A  I  G  Q  G  M  P  P  N  M  V  A  N  S  Q  R  Q  M  Q  G  R  Q  Q  Q  :  V  A  S  A  P  A  Q  S  L  A  I  G  T  P  G  I  S  A  S  P  L  L  A  E  F  T  P  L  D  G  T  H  A  N  V  S  A  A  V  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="150316" stop="150346"/>
                    <exon start="150820" stop="151166"/>
                    <exon start="155694" stop="155813"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASSGQNALGPGSHSMQSQVNSQAQQLPVPMVANQTQTRQPLLQQNLQNNMASTGLQNSASLAPSLPSVSNLTQGTMPNVVGQNSNLQTMQNMPNVGQNLVGNAIGQGMPPNMVANSQRQMQGRQQQVASAPAQSLAIGTPGISASPLLAEFTPLDGTHANVSAAVP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="155977" PGL_stop="158715"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="155977" e_stop="156281"/>
            <exon e_start="157739" e_stop="157939"/>
            <exon e_start="158068" e_stop="158156"/>
            <exon e_start="158489" e_stop="158715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="0.995"/>
          <exon-intron don_prob="0.812" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="155977" e_stop="156281" e_length="305"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="156282" i_stop="157738" i_length="1457"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="157739" e_stop="157939" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="157940" i_stop="158067" i_length="128"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="158068" e_stop="158156" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.812" acc_prob="0.982">
            <gDNA_intron_boundary i_start="158157" i_stop="158488" i_length="332"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="158489" e_stop="158715" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155977" stop="156281"/>
              <exon start="157739" stop="157939"/>
              <exon start="158068" stop="158156"/>
              <exon start="158489" stop="158715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331724" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTCAGTTCAAGACATCTATTCAGTTGTCAGTATGAATGATAGAATAGCAGGATCTGCTCCAGGAAATGGGTCAAGAGCAGCTGTTGGCGAAGATTTGGTTGCCATGACCAAATGTCGTCTCCAAGCGAGAAACTACTTTACGCAGGATGGACCTACAGGAACAAAGAAAATGAAGCGATATACAACTTCCAACGTTGTGTCGTCAAGCAGCAGTTTGAATGATAGTTTCTGGCAGGTGAATTATTCTGAAACACCTGAGTTAGAGTCAACAGCAACATCCAATGCCAAAAGACCTAAAATAGAG : GTTAATATAGCACTGGTTGAAGAGATACAGAAAATCAATCGGCAACTTATCGACACTGTTGTAGAAATTAGTGACGAAGGTGTTGATCCAAGTGCTCTTGCTGCTGCAACGGAGGGTGGTGAAGGCACTACTGTTAAGTGTTCTTTCACTGCCGTTGCATTGAGTCCAAACTTAAAAGCACTATATGCTTCAGCGCAGATG : TCTCCAATTCAGCCTTTGAGATTGCTCGTTCCAGTTAATTATCCAAACTGCTGTCCGATTTTGTTGGACAAGTTTCCAGTTGAAGTTAG : TAAAGAGTATGAAGATCTATCCACAAAGGCCAAGTCAAGGTTTAGTGTCTCCCTGCGAAGTCTTTCACAGCCAATGTCTCTAAAAGACATAGTCAAGACTTGGGATGTTTGTGCTCGTGCTGTAATTTGTGAATATGCACAACAAAGTGGAGGAGGAACCTTCAGCTCAAAGTATGGGTCTTGGGAGAATTGTTCAACTGCAGCATGATCAAAGACGGAATTATGAG</gDNA_template>
            <first_frame> R  Q  F  K  T  S  I  Q  L  S  V  *  M  I  E  *  Q  D  L  L  Q  E  M  G  Q  E  Q  L  L  A  K  I  W  L  P  *  P  N  V  V  S  K  R  E  T  T  L  R  R  M  D  L  Q  E  Q  R  K  *  S  D  I  Q  L  P  T  L  C  R  Q  A  A  V  *  M  I  V  S  G  R  *  I  I  L  K  H  L  S  *  S  Q  Q  Q  H  P  M  P  K  D  L  K  *  R :   L  I  *  H  W  L  K  R  Y  R  K  S  I  G  N  L  S  T  L  L  *  K  L  V  T  K  V  L  I  Q  V  L  L  L  L  Q  R  R  V  V  K  A  L  L  L  S  V  L  S  L  P  L  H  *  V  Q  T  *  K  H  Y  M  L  Q  R  R  C :   L  Q  F  S  L  *  D  C  S  F  Q  L  I  I  Q  T  A  V  R  F  C  W  T  S  F  Q  L  K  L   : V  K  S  M  K  I  Y  P  Q  R  P  S  Q  G  L  V  S  P  C  E  V  F  H  S  Q  C  L  *  K  T  *  S  R  L  G  M  F  V  L  V  L  *  F  V  N  M  H  N  K  V  E  E  E  P  S  A  Q  S  M  G  L  G  R  I  V  Q  L  Q  H  D  Q  R  R  N  Y  E </first_frame>
            <second_frame>  V  S  S  R  H  L  F  S  C  Q  Y  E  *  *  N  S  R  I  C  S  R  K  W  V  K  S  S  C  W  R  R  F  G  C  H  D  Q  M  S  S  P  S  E  K  L  L  Y  A  G  W  T  Y  R  N  K  E  N  E  A  I  Y  N  F  Q  R  C  V  V  K  Q  Q  F  E  *  *  F  L  A  G  E  L  F  *  N  T  *  V  R  V  N  S  N  I  Q  C  Q  K  T  *  N  R   : G  *  Y  S  T  G  *  R  D  T  E  N  Q  S  A  T  Y  R  H  C  C  R  N  *  *  R  R  C  *  S  K  C  S  C  C  C  N  G  G  W  *  R  H  Y  C  *  V  F  F  H  C  R  C  I  E  S  K  L  K  S  T  I  C  F  S  A  D   : V  S  N  S  A  F  E  I  A  R  S  S  *  L  S  K  L  L  S  D  F  V  G  Q  V  S  S  *  S  *  :  *  R  V  *  R  S  I  H  K  G  Q  V  K  V  *  C  L  P  A  K  S  F  T  A  N  V  S  K  R  H  S  Q  D  L  G  C  L  C  S  C  C  N  L  *  I  C  T  T  K  W  R  R  N  L  Q  L  K  V  W  V  L  G  E  L  F  N  C  S  M  I  K  D  G  I  M   </second_frame>
            <third_frame>   S  V  Q  D  I  Y  S  V  V  S  M  N  D  R  I  A  G  S  A  P  G  N  G  S  R  A  A  V  G  E  D  L  V  A  M  T  K  C  R  L  Q  A  R  N  Y  F  T  Q  D  G  P  T  G  T  K  K  M  K  R  Y  T  T  S  N  V  V  S  S  S  S  S  L  N  D  S  F  W  Q  V  N  Y  S  E  T  P  E  L  E  S  T  A  T  S  N  A  K  R  P  K  I  E  :  V  N  I  A  L  V  E  E  I  Q  K  I  N  R  Q  L  I  D  T  V  V  E  I  S  D  E  G  V  D  P  S  A  L  A  A  A  T  E  G  G  E  G  T  T  V  K  C  S  F  T  A  V  A  L  S  P  N  L  K  A  L  Y  A  S  A  Q  M  :  S  P  I  Q  P  L  R  L  L  V  P  V  N  Y  P  N  C  C  P  I  L  L  D  K  F  P  V  E  V  S :   K  E  Y  E  D  L  S  T  K  A  K  S  R  F  S  V  S  L  R  S  L  S  Q  P  M  S  L  K  D  I  V  K  T  W  D  V  C  A  R  A  V  I  C  E  Y  A  Q  Q  S  G  G  G  T  F  S  S  K  Y  G  S  W  E  N  C  S  T  A  A  *  S  K  T  E  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="155979" stop="156281"/>
                    <exon start="157739" stop="157939"/>
                    <exon start="158068" stop="158156"/>
                    <exon start="158489" stop="158696"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVQDIYSVVSMNDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNYFTQDGPTGTKKMKRYTTSNVVSSSSSLNDSFWQVNYSETPELESTATSNAKRPKIEVNIALVEEIQKINRQLIDTVVEISDEGVDPSALAAATEGGEGTTVKCSFTAVALSPNLKALYASAQMSPIQPLRLLVPVNYPNCCPILLDKFPVEVSKEYEDLSTKAKSRFSVSLRSLSQPMSLKDIVKTWDVCARAVICEYAQQSGGGTFSSKYGSWENCSTAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="161706" PGL_stop="167509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="161706" e_stop="161763"/>
            <exon e_start="162204" e_stop="162303"/>
            <exon e_start="163628" e_stop="163755"/>
            <exon e_start="163831" e_stop="163984"/>
            <exon e_start="164132" e_stop="164241"/>
            <exon e_start="165362" e_stop="165445"/>
            <exon e_start="165528" e_stop="165576"/>
            <exon e_start="165697" e_stop="165788"/>
            <exon e_start="166879" e_stop="167017"/>
            <exon e_start="167177" e_stop="167509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.983"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.763" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.838" e_score="0.987"/>
          <exon-intron don_prob="0.478" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.462" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="161706" e_stop="161763" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="161764" i_stop="162203" i_length="440"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="162204" e_stop="162303" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="162304" i_stop="163627" i_length="1324"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="163628" e_stop="163755" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.763" acc_prob="0.994">
            <gDNA_intron_boundary i_start="163756" i_stop="163830" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="163831" e_stop="163984" e_length="154"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.838">
            <gDNA_intron_boundary i_start="163985" i_stop="164131" i_length="147"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="164132" e_stop="164241" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.478" acc_prob="0.999">
            <gDNA_intron_boundary i_start="164242" i_stop="165361" i_length="1120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="165362" e_stop="165445" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="165446" i_stop="165527" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="165528" e_stop="165576" e_length="49"/>
          </exon>
          <intron i_serial="7" don_prob="0.462" acc_prob="0.883">
            <gDNA_intron_boundary i_start="165577" i_stop="165696" i_length="120"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="165697" e_stop="165788" e_length="92"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="0.975">
            <gDNA_intron_boundary i_start="165789" i_stop="166878" i_length="1090"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="166879" e_stop="167017" e_length="139"/>
          </exon>
          <intron i_serial="9" don_prob="0.954" acc_prob="0.960">
            <gDNA_intron_boundary i_start="167018" i_stop="167176" i_length="159"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="167177" e_stop="167509" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161706" stop="161763"/>
              <exon start="162204" stop="162303"/>
              <exon start="163628" stop="163755"/>
              <exon start="163831" stop="163984"/>
              <exon start="164132" stop="164241"/>
              <exon start="165362" stop="165445"/>
              <exon start="165528" stop="165576"/>
              <exon start="165697" stop="165788"/>
              <exon start="166879" stop="167017"/>
              <exon start="167177" stop="167509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324565" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTCTCTCCTCTTTCTCTCTCTTTCTGCCTTTCTCTTCATCAGAAAAAAGTTCACT : GGCAATCATGAGCAACGAAGAAGAGAAAAGATGTCCTCTGTGTGCTGAAGAGATGGACTGGACAGATCAGCAGTTTAAGCCTTGCAAATGTGGTTATCAG : GTGTGTCTTTGGTGTTGGCATCACATAATGGACATGGCAGAAAAAGATGAGTCAGAGGGACGATGTCCTGCATGTCGAACAACATACGAAAAGGAGAAAGTTGTTAGAATGCAAACAAATATTGAGAG : GGCAGGGAACAACAATGCCAATAGGAAAAGCAAACAACAACCAAAGGCAAAGCCAAAAACTAATGAAGCCAAGAAGGATCTCACGAATGTTCGGGTCATTCAACGTAAAATGGCATATGTGATTGGCCTGCCTCTAAGTCTTGCAGATGAAGAT : CTTTTACAGCGGAAGGAATATTTTGGGCAGTATGGAAAAGTTACCAAAATTTCTCTCTCTAGGACAACTGGTGGTGCCATCCAGCAATTTGTTAATGATACTTGTAGTGT : ATATATTACATATTCAAAAGAAGAGGAGGCCGTGCGGTGTATTCAGTTTGTACATGGTTTTGTCTTGGAAGATAGATATTTGAG : AGCATCATTTGGGACTGCAAAATACTGCCATGCGTGGTTGAGAAACACG : CCTTGCAGTAATCCGTCTTGTCTATATTTGCATAGCATTGGTGCTGATGAAGATAGCTTTGGCAAAGATGACGTAGCTGCGATTCATACAAG : GAATAGAGTTCAACAAATAGCTGGTGACGCCAGTAATATGATGAATCGTTCAGGAAATGTCTTGCCACCTCCAATTGATGAATTATCTAGCACTGGCTTTACATTGACTGAGACATCTAGCATTAGAAATGCTGCAAGT : GATGCATCAAATGATACAGTGAATTACAGTAGCTACATGGCTCATGTAGTTCCTCATGATAAGGATGGAGACGCTGGTGGACCAAACAGAATGACAACGTTTGTTGATATTGTTGGACGGTACAATACTTCTGGTGCAGAGAGCGATGGAAATAGCACGGAAGATTGTAGGATTTTGAATTTATCTTCTGACCTATCTTCAGTAACCATTAGTAAAGATAATCATAGACATGAAAAATATCCTGATAAAACTTTGTTCAAGGTTCCATCTTCAAATCACATTGTCAATCATCCGCGAGGCAACCTAAATTTTGTTGAATTTTCAGATGAACCT</gDNA_template>
            <first_frame> S  L  S  P  L  S  L  S  F  C  L  S  L  H  Q  K  K  V  H   : W  Q  S  *  A  T  K  K  R  K  D  V  L  C  V  L  K  R  W  T  G  Q  I  S  S  L  S  L  A  N  V  V  I  R :   C  V  F  G  V  G  I  T  *  W  T  W  Q  K  K  M  S  Q  R  D  D  V  L  H  V  E  Q  H  T  K  R  R  K  L  L  E  C  K  Q  I  L  R   : G  Q  G  T  T  M  P  I  G  K  A  N  N  N  Q  R  Q  S  Q  K  L  M  K  P  R  R  I  S  R  M  F  G  S  F  N  V  K  W  H  M  *  L  A  C  L  *  V  L  Q  M  K  I :   F  Y  S  G  R  N  I  L  G  S  M  E  K  L  P  K  F  L  S  L  G  Q  L  V  V  P  S  S  N  L  L  M  I  L  V  V   : Y  I  L  H  I  Q  K  K  R  R  P  C  G  V  F  S  L  Y  M  V  L  S  W  K  I  D  I  *   : E  H  H  L  G  L  Q  N  T  A  M  R  G  *  E  T  R :   L  A  V  I  R  L  V  Y  I  C  I  A  L  V  L  M  K  I  A  L  A  K  M  T  *  L  R  F  I  Q   : G  I  E  F  N  K  *  L  V  T  P  V  I  *  *  I  V  Q  E  M  S  C  H  L  Q  L  M  N  Y  L  A  L  A  L  H  *  L  R  H  L  A  L  E  M  L  Q  V :   M  H  Q  M  I  Q  *  I  T  V  A  T  W  L  M  *  F  L  M  I  R  M  E  T  L  V  D  Q  T  E  *  Q  R  L  L  I  L  L  D  G  T  I  L  L  V  Q  R  A  M  E  I  A  R  K  I  V  G  F  *  I  Y  L  L  T  Y  L  Q  *  P  L  V  K  I  I  I  D  M  K  N  I  L  I  K  L  C  S  R  F  H  L  Q  I  T  L  S  I  I  R  E  A  T  *  I  L  L  N  F  Q  M  N   </first_frame>
            <second_frame>  L  S  L  L  F  L  S  L  S  A  F  L  F  I  R  K  K  F  T  :  G  N  H  E  Q  R  R  R  E  K  M  S  S  V  C  *  R  D  G  L  D  R  S  A  V  *  A  L  Q  M  W  L  S   : G  V  S  L  V  L  A  S  H  N  G  H  G  R  K  R  *  V  R  G  T  M  S  C  M  S  N  N  I  R  K  G  E  S  C  *  N  A  N  K  Y  *  E  :  G  R  E  Q  Q  C  Q  *  E  K  Q  T  T  T  K  G  K  A  K  N  *  *  S  Q  E  G  S  H  E  C  S  G  H  S  T  *  N  G  I  C  D  W  P  A  S  K  S  C  R  *  R   : S  F  T  A  E  G  I  F  W  A  V  W  K  S  Y  Q  N  F  S  L  *  D  N  W  W  C  H  P  A  I  C  *  *  Y  L  *  C  :  I  Y  Y  I  F  K  R  R  G  G  R  A  V  Y  S  V  C  T  W  F  C  L  G  R  *  I  F  E  :  S  I  I  W  D  C  K  I  L  P  C  V  V  E  K  H   : A  L  Q  *  S  V  L  S  I  F  A  *  H  W  C  *  *  R  *  L  W  Q  R  *  R  S  C  D  S  Y  K  :  E  *  S  S  T  N  S  W  *  R  Q  *  Y  D  E  S  F  R  K  C  L  A  T  S  N  *  *  I  I  *  H  W  L  Y  I  D  *  D  I  *  H  *  K  C  C  K   : *  C  I  K  *  Y  S  E  L  Q  *  L  H  G  S  C  S  S  S  *  *  G  W  R  R  W  W  T  K  Q  N  D  N  V  C  *  Y  C  W  T  V  Q  Y  F  W  C  R  E  R  W  K  *  H  G  R  L  *  D  F  E  F  I  F  *  P  I  F  S  N  H  *  *  R  *  S  *  T  *  K  I  S  *  *  N  F  V  Q  G  S  I  F  K  S  H  C  Q  S  S  A  R  Q  P  K  F  C  *  I  F  R  *  T  </second_frame>
            <third_frame>   S  L  S  S  F  S  L  F  L  P  F  S  S  S  E  K  S  S  L :   A  I  M  S  N  E  E  E  K  R  C  P  L  C  A  E  E  M  D  W  T  D  Q  Q  F  K  P  C  K  C  G  Y  Q  :  V  C  L  W  C  W  H  H  I  M  D  M  A  E  K  D  E  S  E  G  R  C  P  A  C  R  T  T  Y  E  K  E  K  V  V  R  M  Q  T  N  I  E  R :   A  G  N  N  N  A  N  R  K  S  K  Q  Q  P  K  A  K  P  K  T  N  E  A  K  K  D  L  T  N  V  R  V  I  Q  R  K  M  A  Y  V  I  G  L  P  L  S  L  A  D  E  D  :  L  L  Q  R  K  E  Y  F  G  Q  Y  G  K  V  T  K  I  S  L  S  R  T  T  G  G  A  I  Q  Q  F  V  N  D  T  C  S  V :   Y  I  T  Y  S  K  E  E  E  A  V  R  C  I  Q  F  V  H  G  F  V  L  E  D  R  Y  L  R :   A  S  F  G  T  A  K  Y  C  H  A  W  L  R  N  T  :  P  C  S  N  P  S  C  L  Y  L  H  S  I  G  A  D  E  D  S  F  G  K  D  D  V  A  A  I  H  T  R :   N  R  V  Q  Q  I  A  G  D  A  S  N  M  M  N  R  S  G  N  V  L  P  P  P  I  D  E  L  S  S  T  G  F  T  L  T  E  T  S  S  I  R  N  A  A  S  :  D  A  S  N  D  T  V  N  Y  S  S  Y  M  A  H  V  V  P  H  D  K  D  G  D  A  G  G  P  N  R  M  T  T  F  V  D  I  V  G  R  Y  N  T  S  G  A  E  S  D  G  N  S  T  E  D  C  R  I  L  N  L  S  S  D  L  S  S  V  T  I  S  K  D  N  H  R  H  E  K  Y  P  D  K  T  L  F  K  V  P  S  S  N  H  I  V  N  H  P  R  G  N  L  N  F  V  E  F  S  D  E  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="161708" stop="161763"/>
                    <exon start="162204" stop="162303"/>
                    <exon start="163628" stop="163755"/>
                    <exon start="163831" stop="163984"/>
                    <exon start="164132" stop="164241"/>
                    <exon start="165362" stop="165445"/>
                    <exon start="165528" stop="165576"/>
                    <exon start="165697" stop="165788"/>
                    <exon start="166879" stop="167017"/>
                    <exon start="167177" stop="167509"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLSSFSLFLPFSSSEKSSLAIMSNEEEKRCPLCAEEMDWTDQQFKPCKCGYQVCLWCWHHIMDMAEKDESEGRCPACRTTYEKEKVVRMQTNIERAGNNNANRKSKQQPKAKPKTNEAKKDLTNVRVIQRKMAYVIGLPLSLADEDLLQRKEYFGQYGKVTKISLSRTTGGAIQQFVNDTCSVYITYSKEEEAVRCIQFVHGFVLEDRYLRASFGTAKYCHAWLRNTPCSNPSCLYLHSIGADEDSFGKDDVAAIHTRNRVQQIAGDASNMMNRSGNVLPPPIDELSSTGFTLTETSSIRNAASDASNDTVNYSSYMAHVVPHDKDGDAGGPNRMTTFVDIVGRYNTSGAESDGNSTEDCRILNLSSDLSSVTISKDNHRHEKYPDKTLFKVPSSNHIVNHPRGNLNFVEFSDEP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 28 chains have been computed
$ 
$ memory statistics:
$ 81704 bytes spliced alignments in total
$ 17 spliced alignments have been stored
$ 4806 bytes was the average size of a spliced alignment
$ 23008 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1643 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 33 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-06 21:34:38
-->
