<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-20 05:28:35"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7988" ref_strand="+" ref_description="SGN-M7988 C2_At3g51980 [cosii_markers]">
      <seq>ttgttcagaagcaggtcctggaacttggggcattgacagtgctaatgaagatgatgaaatctcacaccacggaagaagctgtaaaagcattatttgctatttcagcactaataagaaataacatgaatggccgaagtttgttttatcaggaagctggagatacgatgcttcaggaggttcttagcaattcaaatctggatatcaggttgcataagaagtcactgtttcttattgctgatttagccgagagtcagctggaaaatgagaacacagctgaggtttccttttttagcaatcgattgttactgaaggccatcgttgattcaatggcatcaagcgatcttgatctaacagaaaaggccctttacgcaactaaaaacttactactacttagatcgactgatgttcaactcttcaaggacttctgtaaattgaacgaggtacttgagaggacgaggcaacagttgaatgatcttagtgaagaatacgcaatggatgtggagagtcttcgaaaagaagttaacctgaccttccttcaaaagctgaatgaggttacacaatctgcattatgatgacagtctctggcttgatctgggttttgaacgttatactgcttgcattctacgcgcggaagtaaccaagtggatcgcgatatcttcatcatcccacgcctttgttcatctggacgtggactcgaaattggtacatcatcatctgcttaggacaacactaatgtgaaatagacaacattatgagctaacgacgactcgcgctgattttataagtgcctctactatttaagttatagccaattttgtcgaatatttaacttttatcaatcttgcaaaattgatagcaatgtaatgtatgtgatgagaaaatcaattttgtggaaagaccaatattttctgcttctacagaatttgtatcaacctttaagaaaatattcaattttctacgaatttattatgtatctatttcacataaaaaataaaaaaaaaaagggaaattgcgcgtattagtagaaatataatagtcaatttagtgaacataactatagtttgttattattataatttgctgacctatttttagatacaattatgcggattatttttttagtttttgtataattagcatgtttgtagaatttagagtttgtataatatattttgtataatttttatacaatgcaattttatataatatgtacaactgtttaccctttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="1527" stop="4106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1687" g_stop="1700" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1701" i_stop="1838" i_length="138">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1839" g_stop="1997" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="173" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1998" i_stop="2076" i_length="79">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2077" g_stop="2262" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="359" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2263" i_stop="2859" i_length="597">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2860" g_stop="3051" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="551" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3052" i_stop="3127" i_length="76">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3128" g_stop="3803" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="1228" r_length="677" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1229" polyA_stop="1251"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-M7988" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1227</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1687" e_stop="1700"/>
          <exon e_start="1839" e_stop="1997"/>
          <exon e_start="2077" e_stop="2262"/>
          <exon e_start="2860" e_stop="3051"/>
          <exon e_start="3128" e_stop="3803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCAGAAGCAGGTATTGGAGCTATGTTTTTATACAAGTTTGGTCTTTAATGATTTAGTTTCTTTGTCGCTTTCATGTGTGCAGTTCTGTGTTTATATTCTAAATTTACTGGCTATTGTATTGACGCTGTGCAATGACTTTTGCATTCAGGTCCTGGAACTTGGGGCATTGACAGTGCTAATGAAGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAGGTGATCCCACTGAAGATTGAGTCTAGTTAGAACTCGTCTACTGCTGCAGTGTATAACTTCCTTCTGTCGTTGTACGCAGGAGGTTCTTAGCAATTCAAATCTGGATATCAGGTTGCATAAGAAGTCACTGTTTCTTATTGCTGATTTAGCCGAGAGTCAGCTGGAAAATGAGAACACAGCTGAGGTTTCCTTTTTTAGCAATCGATTGTTACTGAAGGCCATCGTTGATTCAATGGCATCAAGCGATCTTGATCTAACAGAAAAGGTTTGTGTAGTCTTTAGTGTGAATGAACATTAATTTCTAAAGTATCTTAGTAGTCTAAATTTCATTTGCACGATCCCTTAGGTTTTCAAATATTAGAAATGATTCTCATCCTCAGCAATTTTGGCCTGACCTTTGTGAAGAGCAAGTGTCGATGGTCTTTTTACGTAAAATCCACAGTTGCATCCGTCATGAGTACACCCGTATACCTCCAAAGTTTAAAGTGTCGCTCTGTTGGATTATCCTTTTTCTTGACTAAATCGCCTACTTTCATTTTTTGTAAGTGGCTATATCAGTCGGTTGTACTGCATTTTAATGGTGGAGTGTTGGTTAGATGGGAGAAGTAATTGGTAGAGCGATGTCTGATTAAAAAATTGATTGACTTGGTTTGGCAAGTCTTTCGAACAACATATAGATTTACGACTTTATAAGGTATATGGGCTCATAAACTTGTTTTATTTGGACTATCCCGCGTATCTTTCATTACATTTCCGTCTTCAATACATTGAACACAGCCTCTGTAATACAAAATATTGCCTTGCATATGTTGGTGACATCTTTAAAAAGTCTGTTATAGGCTTGACATTGCTTTAACTGCAGGCCCTTTACGCAACTAAAAACTTACTACTACTTAGATCGACTGATGTTCAACTCTTCAAGGACTTCTGTAAATTGAACGAGGTACTTGAGAGGACGAGGCAACAGTTGAATGATCTTAGTGAAGAATACGCAATGGATGTGGAGAGTCTTCGAAAAGAAGTTAACCTGACCTTCCTTCAAAAGCTGAATGAGGTAACAGAACCATTAACGTAGATTTCTTTTCATTTGAACTTGAACTTGGATCCTTTGCTAAAACTCGAAATGACAGGTTACACAATCTGCATTATGATGACAGTCTCTGGCTTGATCTGGGTTTTGAACGTTATACTGCTTGCATTCTACGCGCGGAAGTAACCAAGTGGATCGCGATATCTTCATCATCCCACGCCTTTGTTCATCTGGACGTGGACTCGAAATTGGTACATCATCATCTGCTTAGGACAACACTAATGTGAAATAGACAACATTATGAGCTAACGACGACTCGCGCTGATTTTATAAGTGCCTCTACTATTTAAGTTATAGCCAATTTTGTCGAATATTTAACTTTTATCAATCTTGCAAAATTGATAGCAATGTAATGTATGTGATGAGAAAATCAATTTTGTGGAAAGACCAATATTTTCTGCTTCTACAGAATTTGTATCAACCTTTAAGAGAATATTCAATTTTCTACGAATTTATTATGTATCTATTTCACATAAAAAATAAAAAAAAAAAGGGAAATTGCGCGTATTAGTAGAAATATAATAGTCAATTTAGTGAACATAACTATAGTTTGTTATTATTATAATTTGCTGACCTATTTTTAGATACAATTATGCGGATTA-TTTTTTAGTTTTTGTATAATTAGCATGTTTGTAGAATTTAGAGTTTGTATAATATATTTTGTATAATTTTTATACAATGCAATTTTATATAATATGTACAACTGTTTACACTTT</genome_strand>
        <mrna_strand>TTGTTCAGAAGCAG..........................................................................................................................................GTCCTGGAACTTGGGGCATTGACAGTGCTAATGAAGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAG...............................................................................GAGGTTCTTAGCAATTCAAATCTGGATATCAGGTTGCATAAGAAGTCACTGTTTCTTATTGCTGATTTAGCCGAGAGTCAGCTGGAAAATGAGAACACAGCTGAGGTTTCCTTTTTTAGCAATCGATTGTTACTGAAGGCCATCGTTGATTCAATGGCATCAAGCGATCTTGATCTAACAGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTTACGCAACTAAAAACTTACTACTACTTAGATCGACTGATGTTCAACTCTTCAAGGACTTCTGTAAATTGAACGAGGTACTTGAGAGGACGAGGCAACAGTTGAATGATCTTAGTGAAGAATACGCAATGGATGTGGAGAGTCTTCGAAAAGAAGTTAACCTGACCTTCCTTCAAAAGCTGAATGAG............................................................................GTTACACAATCTGCATTATGATGACAGTCTCTGGCTTGATCTGGGTTTTGAACGTTATACTGCTTGCATTCTACGCGCGGAAGTAACCAAGTGGATCGCGATATCTTCATCATCCCACGCCTTTGTTCATCTGGACGTGGACTCGAAATTGGTACATCATCATCTGCTTAGGACAACACTAATGTGAAATAGACAACATTATGAGCTAACGACGACTCGCGCTGATTTTATAAGTGCCTCTACTATTTAAGTTATAGCCAATTTTGTCGAATATTTAACTTTTATCAATCTTGCAAAATTGATAGCAATGTAATGTATGTGATGAGAAAATCAATTTTGTGGAAAGACCAATATTTTCTGCTTCTACAGAATTTGTATCAACCTTTAAGAAAATATTCAATTTTCTACGAATTTATTATGTATCTATTTCACATAAAAAATAAAAAAAAAAAGGGAAATTGCGCGTATTAGTAGAAATATAATAGTCAATTTAGTGAACATAACTATAGTTTGTTATTATTATAATTTGCTGACCTATTTTTAGATACAATTATGCGGATTATTTTTTTAGTTTTTGTATAATTAGCATGTTTGTAGAATTTAGAGTTTGTATAATATATTTTGTATAATTTTTATACAATGCAATTTTATATAATATGTACAACTGTTTACCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M443-F" ref_strand="+" ref_description="SGN-M443-F TG584-F [rflp_markers_forward]">
      <seq>gggagacagcttgcatgcctgcagcatggaatctacatcatttataatggccatgttgcaccaaaaaatctagcaaagaaatacaattttgtttaagattatgcatgttgcaatgtttgtcttcaaaaaatcagtatgtttctttccatccatattgtccaccaaacgattatgggaatagtatcgcgaccatctcatcattggtgttctcctccaattaaaaaagaaacacagtattactggctaaattgagattctagtaatactttcctattagtcattttctccatctcacgaacctagaaaatagtgaaaaaaatgaaaaaaggaaagctgcaactgaaagctttgaagatgattggaactaagacaggtgggattgggggtagagaaactctcacatgcagtacaatcaaggggagcaaagtacaaccacaatgagaaatagacaaagaatacaatgtagcaatacctcccatcaggattattaggtgatgtcagaaatatgcactttggtttctcacgttcaaccacttcggtaatccgttcaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="19967" stop="21101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20272" g_stop="20801" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="554" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-M443-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M443-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20272" e_stop="20801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGAATCTACATCATTTATAATGGCCATGTTGCACCAAAAAATCTAGCAAAGAAATACAATTTTGTTTAAGATTATGCATGTTGCAATGTTTGTCTTCAAAAAATCAGTATGTTTCTTTCCATCCATATTGTCCACCAAACGATTATGGGAATAGTATCGCGACCATCTCATCATTGGTGTTCTCCTCCAATTAAAAAAGAAACACAGTATTACTGGCTAAATTGAGATTCTAGTAATACTTTCCTATTAGTCATTTTCTCCATCTCACGAACCTAGAAAATAGTGAAAAAAATGAAAAAAGGAAAGCTGCAACTGAAAGCTTTGAAGATGATTGGAACTAAGACAGGTGGGATTGGGGGTAGAGAAACTCTCACATGCAGTACAATCAAGGGGAGCAAAGTACAACCACAATGAGAAATAGACAAAGAATACAATGTAGCAATACCTCCCATCAGGATTATTAGGTGATGTCAGAAATATGCACTTTGGTTTCTCACGTTCAACCACTTCGGTAATCCGTTCAACGT</genome_strand>
        <mrna_strand>CATGGAATCTACATCATTTATAATGGCCATGTTGCACCAAAAAATCTAGCAAAGAAATACAATTTTGTTTAAGATTATGCATGTTGCAATGTTTGTCTTCAAAAAATCAGTATGTTTCTTTCCATCCATATTGTCCACCAAACGATTATGGGAATAGTATCGCGACCATCTCATCATTGGTGTTCTCCTCCAATTAAAAAAGAAACACAGTATTACTGGCTAAATTGAGATTCTAGTAATACTTTCCTATTAGTCATTTTCTCCATCTCACGAACCTAGAAAATAGTGAAAAAAATGAAAAAAGGAAAGCTGCAACTGAAAGCTTTGAAGATGATTGGAACTAAGACAGGTGGGATTGGGGGTAGAGAAACTCTCACATGCAGTACAATCAAGGGGAGCAAAGTACAACCACAATGAGAAATAGACAAAGAATACAATGTAGCAATACCTCCCATCAGGATTATTAGGTGATGTCAGAAATATGCACTTTGGTTTCTCACGTTCAACCACTTCGGTAATCCGTTCAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M255-R" ref_strand="+" ref_description="SGN-M255-R TG437-R [rflp_markers_reverse]">
      <seq>ctcctatagggagacagcttgcatgcctgcagcatggaatctacatcatttataatggccatgttgcaccaaaaaatctagcaaagaaatacaattttgtttaagattatgcatgttgcaatgtttgtcttcaaaaaatcagtatgtttctttccatccatattgtccaccaaacgattatgggaatagtatcgcgaccatctcatcattggtgttctcctccaattaaaaaagaaacacagtattactggctaaattgagattctagtaatactttcctattagtcattttctccatctcacgaacctagaaaatagtgaaaaaaatgaaaaaaggaaagctgcaactgaaagctttgaagatgattggaactaagacaggtgggattgggggtagagaaactctcacatgcagtacaatcaaggggagcaaagtacaaccacaatgagaaatagacaaagaatacaatgtagcaatacctcccatcaggattattaggtgatgtcagaaatatgcactttggtttctcacgttcaaccacttcggtaatccgttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="19967" stop="21098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20272" g_stop="20798" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="559" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-M255-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M255-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20272" e_stop="20798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGAATCTACATCATTTATAATGGCCATGTTGCACCAAAAAATCTAGCAAAGAAATACAATTTTGTTTAAGATTATGCATGTTGCAATGTTTGTCTTCAAAAAATCAGTATGTTTCTTTCCATCCATATTGTCCACCAAACGATTATGGGAATAGTATCGCGACCATCTCATCATTGGTGTTCTCCTCCAATTAAAAAAGAAACACAGTATTACTGGCTAAATTGAGATTCTAGTAATACTTTCCTATTAGTCATTTTCTCCATCTCACGAACCTAGAAAATAGTGAAAAAAATGAAAAAAGGAAAGCTGCAACTGAAAGCTTTGAAGATGATTGGAACTAAGACAGGTGGGATTGGGGGTAGAGAAACTCTCACATGCAGTACAATCAAGGGGAGCAAAGTACAACCACAATGAGAAATAGACAAAGAATACAATGTAGCAATACCTCCCATCAGGATTATTAGGTGATGTCAGAAATATGCACTTTGGTTTCTCACGTTCAACCACTTCGGTAATCCGTTCAA</genome_strand>
        <mrna_strand>CATGGAATCTACATCATTTATAATGGCCATGTTGCACCAAAAAATCTAGCAAAGAAATACAATTTTGTTTAAGATTATGCATGTTGCAATGTTTGTCTTCAAAAAATCAGTATGTTTCTTTCCATCCATATTGTCCACCAAACGATTATGGGAATAGTATCGCGACCATCTCATCATTGGTGTTCTCCTCCAATTAAAAAAGAAACACAGTATTACTGGCTAAATTGAGATTCTAGTAATACTTTCCTATTAGTCATTTTCTCCATCTCACGAACCTAGAAAATAGTGAAAAAAATGAAAAAAGGAAAGCTGCAACTGAAAGCTTTGAAGATGATTGGAACTAAGACAGGTGGGATTGGGGGTAGAGAAACTCTCACATGCAGTACAATCAAGGGGAGCAAAGTACAACCACAATGAGAAATAGACAAAGAATACAATGTAGCAATACCTCCCATCAGGATTATTAGGTGATGTCAGAAATATGCACTTTGGTTTCTCACGTTCAACCACTTCGGTAATCCGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M84-R" ref_strand="+" ref_description="SGN-M84-R TG581-R [rflp_markers_reverse]">
      <seq>catggaatctacatcatttataatggccatgttgcaccaaaaaatctagcaaagaaatacaattttgtttaagattatgcatgttgcaatgtttgtcttcaaaaaatcagtatgtttctttccatccatattgtccaccaaacgattatgggaatagtatcgcgaccatctcatcattggtgttctcctccaattaaaaaagaaacacagtattactggctaaattgagattctagtaatactttcctattagtcattttctccatctcacgaacctagaaaatagtgaaaaaaatgaaaaaaggaaagctgcaactgaaagctttgaagatgattggaactaagacaggtgggattgggggtagagaaactctcacatgcagtacaatcaaggggagcaaagtacaaccacaatgagaaatagacaaagaatacaatgtagcaatacctcccatcaggattattaggtgatgtcagaaatatgcactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="19972" stop="21062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20272" g_stop="20762" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-M84-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M84-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20272" e_stop="20762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGAATCTACATCATTTATAATGGCCATGTTGCACCAAAAAATCTAGCAAAGAAATACAATTTTGTTTAAGATTATGCATGTTGCAATGTTTGTCTTCAAAAAATCAGTATGTTTCTTTCCATCCATATTGTCCACCAAACGATTATGGGAATAGTATCGCGACCATCTCATCATTGGTGTTCTCCTCCAATTAAAAAAGAAACACAGTATTACTGGCTAAATTGAGATTCTAGTAATACTTTCCTATTAGTCATTTTCTCCATCTCACGAACCTAGAAAATAGTGAAAAAAATGAAAAAAGGAAAGCTGCAACTGAAAGCTTTGAAGATGATTGGAACTAAGACAGGTGGGATTGGGGGTAGAGAAACTCTCACATGCAGTACAATCAAGGGGAGCAAAGTACAACCACAATGAGAAATAGACAAAGAATACAATGTAGCAATACCTCCCATCAGGATTATTAGGTGATGTCAGAAATATGCACTTTG</genome_strand>
        <mrna_strand>CATGGAATCTACATCATTTATAATGGCCATGTTGCACCAAAAAATCTAGCAAAGAAATACAATTTTGTTTAAGATTATGCATGTTGCAATGTTTGTCTTCAAAAAATCAGTATGTTTCTTTCCATCCATATTGTCCACCAAACGATTATGGGAATAGTATCGCGACCATCTCATCATTGGTGTTCTCCTCCAATTAAAAAAGAAACACAGTATTACTGGCTAAATTGAGATTCTAGTAATACTTTCCTATTAGTCATTTTCTCCATCTCACGAACCTAGAAAATAGTGAAAAAAATGAAAAAAGGAAAGCTGCAACTGAAAGCTTTGAAGATGATTGGAACTAAGACAGGTGGGATTGGGGGTAGAGAAACTCTCACATGCAGTACAATCAAGGGGAGCAAAGTACAACCACAATGAGAAATAGACAAAGAATACAATGTAGCAATACCTCCCATCAGGATTATTAGGTGATGTCAGAAATATGCACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M445-R" ref_strand="+" ref_description="SGN-M445-R TG586-R [rflp_markers_reverse]">
      <seq>cttgttagttgctgttgttacttaatcatcagcatttccaataaatgatgtattgcttggtaatactgtactgtgaaactgtaaaatttaagagagaaatggagtgaatacagtgaaaatgcagagactctacattcagacaaagtggtctttaaaacatggcgcaaaatgaaataagctgagaatttctaattttcttcaatgagataattattgttggaacttctatcaatacgttaatctgtagctctatcaaactggcagtgcctaggaacccagactttagcctggacgttgaacggattaccgaagtggttgaacgtgagaaaccaaagtgcatatttctgacatcacctaataatcctgatgggaggtattgctacattgtattctttgtctatttctcattgtggttgtactttgctccccttgattgtactgcatgtgagagtttctctacccccaatcccacctgtcttagttccaatcatcttcaaagctttcagttgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="21392" stop="20281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21092" g_stop="20581" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-M445-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M445-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21092" e_stop="20581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTTCAGTTGCAG</genome_strand>
        <mrna_strand>CTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGAGATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTTCAGTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M255-F" ref_strand="+" ref_description="SGN-M255-F TG437-F [rflp_markers_forward]">
      <seq>cttgttagttgctgttgttacttaatcatcagcatttccaataaatgatgtattgcttggtaatactgtactgtgaaactgtaaaatttaagagagaaatggagtgaatacagtgaaaatgcagagactctacattcagacaaagtggtctttaaaacatggcgcaaaatgaaataagctgagaatttctaattttcttcaatgagataattattgttggaacttctatcaatacgttaatctgtagctctatcaaactggcagtgcctaggaacccagactttagcctggacgttgaacggattaccgaagtggttgaacgtgagaaaccaaagtgcatatttctgacatcacctaataatcctgatgggaggtattgctacattgtattctttgtctatttctcattgtggttgtactttgctccccttgattggactgcatgtgagagtttctctacccccaatcccacctgtcttagttccaatcatcttcaaagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="21392" stop="20290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21092" g_stop="20590" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-M255-F" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M255-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21092" e_stop="20590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTT</genome_strand>
        <mrna_strand>CTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGAGATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGGACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M84-F" ref_strand="+" ref_description="SGN-M84-F TG581-F [rflp_markers_forward]">
      <seq>cttgttagttgctgttgttacttaatcatcagcatttccaataaatgatgtattgcttggtaatactgtactgtgaaactgtaaaatttaagagagaaatggagtgaatacagtgaaaatgcagagactctacattcagacaaagtggtctttaaaacatggcgcaaaatgaaataagctgagaatttctaattttcttcaatgagataattattgttggaacttctatcaatacgttaatctgtagctctatcaaactggcagtgcctaggaacccagactttagcctggacgttgaacggattaccgaagtggttgaacgtgagaaaccaaagtgcatatttctgacatcacctaataatcctgatgggaggtattgctacattgtattctttgtctatttctcattgtggttgtactttgctccccttgattgtactgcatgtgagagtttctctacccccaatcccacctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="21392" stop="20316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21092" g_stop="20616" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-M84-F" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M84-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21092" e_stop="20616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTC</genome_strand>
        <mrna_strand>CTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGAGATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7806" ref_strand="+" ref_description="SGN-M7806 C2_At3g19900 [cosii_markers]">
      <seq>tctggggcctcacaacaacaaactctgctgcttctaccagaatgacgagttctctggggacccaccctcgtatctgctcgttaggaggaggtccagagcatattgtgaaggaaagaagctgcaaaatttcatgctttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagttcaatagctgccgccacctaaatactagaaaatgctgggcagttttttccgctgcaaccggtgatgcaaatgatccggatgactcagaagatagtaagaatcctccagaaaatgaaaatgaatccgtaaataatgaaattttaaggggtaatcttgaaagaatcgtcgggcgggatgactctgcatttagcggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaatcttcttgcgttaaacgttatgtggaaatacagggagcagcgatcttttccgttaactgaagaagagtacctactgaggctagatgatgtggcaaacacattgaaatgctggggagctgtttcacatattcgtaatagccttgagaagttgaaagagcggcctcggatagggaaggcagtgagcattttcatcgatatggatgaatccggaggccgtgcaaaggaatggatttacaagtagaccagaacattgtagctcctcaatgttgatagttagcaatacataggtagatatatagtacaaaaaagttgaagaaacacttgtattctttattaattactatttcattgtgcagacacaattttttatattgtttccatttgatgtcaattacacccttctgcagacaacagcatatttgttgtcctgcaattgtttatatatgtctccataaatgttgtgtttttaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="38285" stop="32014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37985" g_stop="37946" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37945" i_stop="36011" i_length="1935">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36010" g_stop="35731" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="320" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="455" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34787" g_stop="34731" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="512" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33437" g_stop="33303" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="647" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32607" g_stop="32314" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="941" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="942" polyA_stop="959"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-M7806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>941</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37985" e_stop="37946"/>
          <exon e_start="36010" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34731"/>
          <exon e_start="33437" e_stop="33303"/>
          <exon e_start="32607" e_stop="32314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGGGCCTCACAACAACAAACTCTGCTGCTTCTACCAGGTATTTTTCTCTCCCACTTATTTATTATTATTTTTTTGTCAATTTTATCTAATTATCTGTTTTGAATCTTGATTTCTAAAGTTCCCTTTTTTATTTTGTTAGATTTTTTTGATGATTTATAGAAGGGGTTGTTGGAATTTTGGTTTGTTAAGTTTTTTTTGTAATGATGTGTGAAATATAGTTGTATGACAAGGGTTTTTTTTTTCTCATTGTGTATCAAAAGTAAGGTATGTGCTTAGTTAAAAGATACTTGATTTGAGGGGGTTTAGGATGTGAAGTTTATGGATTCGGGATTTTAGCACTTTTTTGAGTTGTTAGGTTGTAAATTTATAGTTTGTAAATATTGAAATGGAGTAGGTGGAGCTAGAAATTTAAAAGTTTTCTTTTTTATAGCTGTGGTGTACTTGCCAACTTGAGTGCTACCTCCCATCGACAACAGGTACATGTAGCTTCGTGTATTGTCTTTACTAGGATTTGAACCTGAAACCTCGCGAGTAGTAGGCCACACACCCTTGGGTACAGCTAGAAAATGAAGTTAATGGAGTTTGAATTTGACACCGAGTATATAACTTGTTTTATGAGTACATGGCTTGATTTACGAAATATTGGAAGTGCTCCTTGGAGAAGGTCCACGTTGATGCATTATGAAGTAGCTCTAGCTTCTTCTTCTTCTTCTTTTTTTCCTTTTTCAAATATAGCTATAATGAATTATGACAAGTTGATGTTGAATCAAATGATGTGCACTACCCTAGCTAAGAATAACTTGTAGCAGCTATAACATCCTACTTTATGAAAGAGCAAGAAAAGTTTGGACTATGGAGGAACAACGGTTTCCATGGTCAGTTTATGCTTATCCAGAAGGTGCAGGGGTTGGTTTCTGGTAGAACGAGCTTATCTTATACATGTTTTGTTGAAGAAGCTATGGTTTCGATCTGATTTGCCTGCACCTTATGTTTGAGCATGCGCTACCATGAACTAAGTACAGGTGTTGGACATCAGGTGTGTGTTATGGCCTTATGGCGTTAAAATTGTCAAAGCTTATGCATATAAAATATGTATATACACACAAAGTGTTGGATGGAGGCGCAAGGATACAATAATAAGCATGAAAATTGATGTGTGTTAGGCTATGTTGCTCCGACTCTCCAAAATATTACCATACTTGTGCTGGATTTTCCAAAAAATGCACTACTTTTGAAGAGTCGGCACACAATCGTCGACATTTTCAAAGAGTCCGAGCGACATTGCTGCTTAGCATCTTCTTGATACATAGGGTGAATGGCTTTTAGACTCATGTATAGTTAGTGTAACCTAAAAATAATTCTTTTGATGAGTCTATACTGAGTAGTCCAGAGTTTATTCTTGTTGAAATATCTATAACTTCAGTGCTTAAGCGCGCCTTTGAAAATCTTGTTATCAACCCTTGTTTACCCCTCTTTCTTTAGTTAATTCATTTCAATATACTAGCTATCTAATATCTTCTTATTATGCCTACGATTGATTAAGCAAAAAAAAAAAAATTGTTTCTTCACTTAGCCATTGATGTATGGCCTAATTGCTTCTTAAAACTCTCTAGTTCTATATTGTTACTGGTTTTCTACATGTGGAGGTTAGATTTTATGAATCTGCACAAAACTGTGATCGTAAAAGTTTTTGTATCCTAACATAGTGAATTGTTAAATCTACAAATTGTAAATTACTTTAACGTAACCAACCGTCTTATCACGTGCAATCTTATTGCTTTGTTTATGCTGCTACACAAACAATAGAAAATTTAATGTCGAGGCGTTCATGTCTAATGGCATTACATATTGTATCTTTAAAGTTAGGAATAAAAGTTCATACCTTTACATGTGTCTTCCTATTTGGTGTTTCAGAAATTTCCAAATAAATTTTCCTTGGTCAGTAACTCGTGCTTTGATGCCAAACTTTCAGAATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAGGTGAGCTGATCTCTTTAGCATTCGTAATGAGATCGGTTGTTGTCATTAAACTATATCTACCATATGATTTGATGAATATTTTAAAATGTTCCCGGTGTGATACAAAGTTCTCAAACAGAAGTTCAGTAAGTGAAGAACCAAAGTTTGTTTATCTTATACTTTCCACTTGGGAGATGTCAGCACTCTGAAGAACGCACTTCAGTATTCTCTCATCTTTGAAAGCCGTGGCGGAATTTCCTTATTCTTCAGATACTTAAGATCTTATATCAAAGAGTTAATAGTCAAAAACACACCTAAAAAGTATCTCAGTTTTTCGAGTTTTACACCTGAACTATTAGGTAAGCGAGCTTCCTACTTGAACTATCACCAACTATTTATTAAAATACACCTCAACTATTAGATGTTTCCCTTTCCTACCTGAAATATCACCATCGCTCGGGTACACAAAGGGAATAATTGATAGTTGAGGTATGTTTGATAAACAGTTGGTGATAGTTCAAGTAGGAAACTCATCCACTTGATAGTTCAGGTATGAAACTCGAAAAACTTGGATATTTTAGAGTGTTTTTGACTCTTCACTTTATATGAAACAATCTAAATAGCCCCAATAAAGTTTCAGTTTGTCCATCCCTTCTTTTGTTTTCATCTTGGTTTCTCGTCGTGATTGGGGTTGGGCTTTTTGACGGAGCATATACCAGAAGGATGATATCAGATGTGATGCTGCAGCACTTCCCTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTCATCACTTTTTGGTTAGTATTAGTTATGCTTGCTTTATAGACAGATCAGTTATAATCTTTTATTTCTTTCTTTTTCGGGATTATGGGTAAGGGTTTGTTAGGTGGGGTGGGATGGGGTGGGGGTGAGGTATGCCTCATCGCATTTTCTGTACACTATGACACTGTTATCCAATGCATATCATACAGGGGTGAACCTATTGTTTAAGCTACGAGTCCAGCTGAACCCTATAGCTTTGGCTTAGACCATGTATGTTTTAACCAGTGAATTAGATGGAATGTTGATAGAACTCCGAATACAAACCCATGATTCTAATTCTAGTTCCGTCTCTGATACCATATGTAGGATACTAACAAAAAAAGAGTAGTGTTATCATTGCTTCCTAGTCCTATTAAGGCTTTGCGTAAACCTCTATCTTAAGCTTATAAGAATCTCGGATATTATCAGTTGTGATGTTTATGAAGCACGTAGATATATCAAATTCTGCATTCCAGAAGTTGTTATGAACTTATAACGACAAATATCATGTCACTCTTGTGCATTATTCTGCCATTCCAAACCGAAAGTTTGTCTCACTATGCTTTTGATCGCGTTCTCTCTTGTTATATACCGCAGGCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTGTTTATATATGTCTCCATAAATGTTGTGTTTTTA</genome_strand>
        <mrna_strand>TCTGGGGCCTCACAACAACAAACTCTGCTGCTTCTACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC......................................................................................................GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTGTTTATATATGTCTCCATAAATGTTGTGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1579" ref_strand="+" ref_description="SGN-M1579 T0741 [cos_markers]">
      <seq>cagaatgacgagttctctggggattcaccctcgtatctgctcgttaggaggaggtccagagcatattgtgaaggaaagaagctgcaaaatttcatgctttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagttcaatagctgccgccacctaaatactagaaaatgctgggcagttttttccgctgcaaccggtgatgcaaatgatccggatgactcagaagatagtaagaatcctccagaaaatgaaaatgaatccgtaaataatgaaattttaaggggtaatcttgaaagaatcgtcgggcgggatgactctgcatttagcggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaatcttcttgcgttaaacgttatgtggaaatacagggagcagcgatcttttccgttaactgaagaagagtacctactgaggctagatgatgtggcaaacacattgaaatgctggggagctgtttcacatattcgtaatagccttgagaagttgaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="36313" stop="33021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36013" g_stop="35731" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="418" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34787" g_stop="34731" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="475" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33437" g_stop="33321" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="592" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-M1579" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36013" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34731"/>
          <exon e_start="33437" e_stop="33321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAGGTGAGCTGATCTCTTTAGCATTCGTAATGAGATCGGTTGTTGTCATTAAACTATATCTACCATATGATTTGATGAATATTTTAAAATGTTCCCGGTGTGATACAAAGTTCTCAAACAGAAGTTCAGTAAGTGAAGAACCAAAGTTTGTTTATCTTATACTTTCCACTTGGGAGATGTCAGCACTCTGAAGAACGCACTTCAGTATTCTCTCATCTTTGAAAGCCGTGGCGGAATTTCCTTATTCTTCAGATACTTAAGATCTTATATCAAAGAGTTAATAGTCAAAAACACACCTAAAAAGTATCTCAGTTTTTCGAGTTTTACACCTGAACTATTAGGTAAGCGAGCTTCCTACTTGAACTATCACCAACTATTTATTAAAATACACCTCAACTATTAGATGTTTCCCTTTCCTACCTGAAATATCACCATCGCTCGGGTACACAAAGGGAATAATTGATAGTTGAGGTATGTTTGATAAACAGTTGGTGATAGTTCAAGTAGGAAACTCATCCACTTGATAGTTCAGGTATGAAACTCGAAAAACTTGGATATTTTAGAGTGTTTTTGACTCTTCACTTTATATGAAACAATCTAAATAGCCCCAATAAAGTTTCAGTTTGTCCATCCCTTCTTTTGTTTTCATCTTGGTTTCTCGTCGTGATTGGGGTTGGGCTTTTTGACGGAGCATATACCAGAAGGATGATATCAGATGTGATGCTGCAGCACTTCCCTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAG</genome_strand>
        <mrna_strand>CAGAATGACGAGTTCTCTGGGGATTCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC......................................................................................................GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M104-R" ref_strand="+" ref_description="SGN-M104-R TG370-R [rflp_markers_reverse]">
      <seq>tactaaaatcaacaggcatattgctttgcaacttggtctcttttgatctctgaacgtcgaatttcatatactgattagcatggaaagtaacttcagcggctgattctgactgaaatgcttcacaatttacaactaatttctctttcccagcttgcttctcccctgtactaaaatcaaccggcatattgctttgcaactcggcctcttttgatctctgaacgccgactttcatatacagattagcatggaaagtttctccagcaactgattcaggctgaaatccttcacaatttacagctattttctctttcccaacttgcttctcccttgcatttaaatgaattttcttactacatttcttctttgccttgactatttcccgaaactctagcttcttagattgataagctagggaagcctcttcatacgtgccaaaagtccccaaccaaatctttttcttactaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="91384" stop="92449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91684" g_stop="92149" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-M104-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M104-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91684" e_stop="92149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTAAAATCAACAGGCATATTGCTTTGCAACTTGGTCTCTTTTGATCTCTGAACGTCGAATTTCATATACTGATTAGCATGGAAAGTAACTTCAGCGGCTGATTCTGACTGAAATGCTTCACAATTTACAACTAATTTCTCTTTCCCAGCTTGCTTCTCCCCTGTACTAAAATCAACCGGCATATTGCTTTGCAACTCGGCCTCTTTTGATCTCTGAACGCCGACTTTCATATACAGATTAGCATGGAAAGTTTCTCCAGCAACTGATTCAGGCTGAAATCCTTCACAATTTACAGCTATTTTCTCTTTCCCAACTTGCTTCTCCCTTGCATTTAAATGAATTTTCTTACTACATTTCTTCTTTGCCTTGACTATTTCCCGAAACTCTAGCTTCTTAGATTGATAAGCTAGGGAAGCCTCTTCATACGTGCCAAAAGTCCCCAACCAAATCTTTTTCTTACTAAT</genome_strand>
        <mrna_strand>TACTAAAATCAACAGGCATATTGCTTTGCAACTTGGTCTCTTTTGATCTCTGAACGTCGAATTTCATATACTGATTAGCATGGAAAGTAACTTCAGCGGCTGATTCTGACTGAAATGCTTCACAATTTACAACTAATTTCTCTTTCCCAGCTTGCTTCTCCCCTGTACTAAAATCAACCGGCATATTGCTTTGCAACTCGGCCTCTTTTGATCTCTGAACGCCGACTTTCATATACAGATTAGCATGGAAAGTTTCTCCAGCAACTGATTCAGGCTGAAATCCTTCACAATTTACAGCTATTTTCTCTTTCCCAACTTGCTTCTCCCTTGCATTTAAATGAATTTTCTTACTACATTTCTTCTTTGCCTTGACTATTTCCCGAAACTCTAGCTTCTTAGATTGATAAGCTAGGGAAGCCTCTTCATACGTGCCAAAAGTCCCCAACCAAATCTTTTTCTTACTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M104-F" ref_strand="+" ref_description="SGN-M104-F TG370-F [rflp_markers_forward]">
      <seq>agcaaatgcagaagaaaatcgaagctctgtttctgctcaccacatgtatgataaaatgccaagctcaaattccactaacaaaagtgttcctgctgctgaaaggagtgacagtatagttttgggtttgcagaatgcagcaaatttttctggggttcggaagaggaaacgaggtgagtatgttgctgaaaaatgggacccgattacgaaaaaacgggtttgtttgggtacattcaacactgctgaagaagcttccgaggcttatttagctaagcaatgcgaattttctactgcccgccacatgcttgatgaaatgccaagctcaaattcgactaacaaaactgctaatgctgctgccggttccactgatgctgatcatgggaaaaagccccttattcaggagatatctttcagtcacaaaagcatgttacttggagctgaatggcataacatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-4ylhL/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="93416" stop="92363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93116" g_stop="92663" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-M104-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M104-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93116" e_stop="92663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAATGCAGAAGAAAATCGAAGCTCTGTTTCTGCTCACCACATGTATGATAAAATGCCAAGCTCAAATTCCACTAACAAAAGTGTTCCTGCTGCTGAAAGGAGTGACAGTATAGTTTTGGGTTTGCAGAATGCAGCAAATTTTTCTGGGGTTCGGAAGAGGAAACGAGGTGAGTATGTTGCTGAAAAATGGGACCCGATTACGAAAAAACGGGTTTGTTTGGGTACATTCAACACTGCTGAAGAAGCTTCCGAGGCTTATTTAGCTAAGCAATGCGAATTTTCTACTGCCCGCCACATGCTTGATGAAATGCCAAGCTCAAATTCGACTAACAAAACTGCTAATGCTGCTGCCGGTTCCACTGATGCTGATCATGGGAAAAAGCCCCTTATTCAGGAGATATCTTTCAGTCACAAAAGCATGTTACTTGGAGCTGAATGGCATAACATGGGG</genome_strand>
        <mrna_strand>AGCAAATGCAGAAGAAAATCGAAGCTCTGTTTCTGCTCACCACATGTATGATAAAATGCCAAGCTCAAATTCCACTAACAAAAGTGTTCCTGCTGCTGAAAGGAGTGACAGTATAGTTTTGGGTTTGCAGAATGCAGCAAATTTTTCTGGGGTTCGGAAGAGGAAACGAGGTGAGTATGTTGCTGAAAAATGGGACCCGATTACGAAAAAACGGGTTTGTTTGGGTACATTCAACACTGCTGAAGAAGCTTCCGAGGCTTATTTAGCTAAGCAATGCGAATTTTCTACTGCCCGCCACATGCTTGATGAAATGCCAAGCTCAAATTCGACTAACAAAACTGCTAATGCTGCTGCCGGTTCCACTGATGCTGATCATGGGAAAAAGCCCCTTATTCAGGAGATATCTTTCAGTCACAAAAGCATGTTACTTGGAGCTGAATGGCATAACATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>11</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1687" PGL_stop="3803"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1687" e_stop="1700"/>
            <exon e_start="1839" e_stop="1997"/>
            <exon e_start="2077" e_stop="2262"/>
            <exon e_start="2860" e_stop="3051"/>
            <exon e_start="3128" e_stop="3803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.868" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.649" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1687" e_stop="1700" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="1701" i_stop="1838" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1839" e_stop="1997" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.914">
            <gDNA_intron_boundary i_start="1998" i_stop="2076" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2077" e_stop="2262" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.868">
            <gDNA_intron_boundary i_start="2263" i_stop="2859" i_length="597"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2860" e_stop="3051" e_length="192"/>
          </exon>
          <intron i_serial="4" don_prob="0.902" acc_prob="0.649">
            <gDNA_intron_boundary i_start="3052" i_stop="3127" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="3128" e_stop="3803" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1687" stop="1700"/>
              <exon start="1839" stop="1997"/>
              <exon start="2077" stop="2262"/>
              <exon start="2860" stop="3051"/>
              <exon start="3128" stop="3803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7988" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTTCAGAAGCAG : GTCCTGGAACTTGGGGCATTGACAGTGCTAATGAAGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAG : GAGGTTCTTAGCAATTCAAATCTGGATATCAGGTTGCATAAGAAGTCACTGTTTCTTATTGCTGATTTAGCCGAGAGTCAGCTGGAAAATGAGAACACAGCTGAGGTTTCCTTTTTTAGCAATCGATTGTTACTGAAGGCCATCGTTGATTCAATGGCATCAAGCGATCTTGATCTAACAGAAAAG : GCCCTTTACGCAACTAAAAACTTACTACTACTTAGATCGACTGATGTTCAACTCTTCAAGGACTTCTGTAAATTGAACGAGGTACTTGAGAGGACGAGGCAACAGTTGAATGATCTTAGTGAAGAATACGCAATGGATGTGGAGAGTCTTCGAAAAGAAGTTAACCTGACCTTCCTTCAAAAGCTGAATGAG : GTTACACAATCTGCATTATGATGACAGTCTCTGGCTTGATCTGGGTTTTGAACGTTATACTGCTTGCATTCTACGCGCGGAAGTAACCAAGTGGATCGCGATATCTTCATCATCCCACGCCTTTGTTCATCTGGACGTGGACTCGAAATTGGTACATCATCATCTGCTTAGGACAACACTAATGTGAAATAGACAACATTATGAGCTAACGACGACTCGCGCTGATTTTATAAGTGCCTCTACTATTTAAGTTATAGCCAATTTTGTCGAATATTTAACTTTTATCAATCTTGCAAAATTGATAGCAATGTAATGTATGTGATGAGAAAATCAATTTTGTGGAAAGACCAATATTTTCTGCTTCTACAGAATTTGTATCAACCTTTAAGAGAATATTCAATTTTCTACGAATTTATTATGTATCTATTTCACATAAAAAATAAAAAAAAAAAGGGAAATTGCGCGTATTAGTAGAAATATAATAGTCAATTTAGTGAACATAACTATAGTTTGTTATTATTATAATTTGCTGACCTATTTTTAGATACAATTATGCGGATTATTTTTTAGTTTTTGTATAATTAGCATGTTTGTAGAATTTAGAGTTTGTATAATATATTTTGTATAATTTTTATACAATGCAATTTTATATAATATGTACAACTGTTTACACTTT</gDNA_template>
            <first_frame> L  F  R  S  R :   S  W  N  L  G  H  *  Q  C  *  *  R  *  *  N  L  T  P  R  K  K  L  *  K  H  Y  L  L  F  Q  H  *  *  E  I  T  *  M  A  E  V  C  F  I  R  K  L  E  I  R  C  F  R :   R  F  L  A  I  Q  I  W  I  S  G  C  I  R  S  H  C  F  L  L  L  I  *  P  R  V  S  W  K  M  R  T  Q  L  R  F  P  F  L  A  I  D  C  Y  *  R  P  S  L  I  Q  W  H  Q  A  I  L  I  *  Q  K  R :   P  F  T  Q  L  K  T  Y  Y  Y  L  D  R  L  M  F  N  S  S  R  T  S  V  N  *  T  R  Y  L  R  G  R  G  N  S  *  M  I  L  V  K  N  T  Q  W  M  W  R  V  F  E  K  K  L  T  *  P  S  F  K  S  *  M  R :   L  H  N  L  H  Y  D  D  S  L  W  L  D  L  G  F  E  R  Y  T  A  C  I  L  R  A  E  V  T  K  W  I  A  I  S  S  S  S  H  A  F  V  H  L  D  V  D  S  K  L  V  H  H  H  L  L  R  T  T  L  M  *  N  R  Q  H  Y  E  L  T  T  T  R  A  D  F  I  S  A  S  T  I  *  V  I  A  N  F  V  E  Y  L  T  F  I  N  L  A  K  L  I  A  M  *  C  M  *  *  E  N  Q  F  C  G  K  T  N  I  F  C  F  Y  R  I  C  I  N  L  *  E  N  I  Q  F  S  T  N  L  L  C  I  Y  F  T  *  K  I  K  K  K  R  E  I  A  R  I  S  R  N  I  I  V  N  L  V  N  I  T  I  V  C  Y  Y  Y  N  L  L  T  Y  F  *  I  Q  L  C  G  L  F  F  S  F  C  I  I  S  M  F  V  E  F  R  V  C  I  I  Y  F  V  *  F  L  Y  N  A  I  L  Y  N  M  Y  N  C  L  H  F </first_frame>
            <second_frame>  C  S  E  A   : G  P  G  T  W  G  I  D  S  A  N  E  D  D  E  I  S  H  H  G  R  S  C  K  S  I  I  C  Y  F  S  T  N  K  K  *  H  E  W  P  K  F  V  L  S  G  S  W  R  Y  D  A  S   : G  G  S  *  Q  F  K  S  G  Y  Q  V  A  *  E  V  T  V  S  Y  C  *  F  S  R  E  S  A  G  K  *  E  H  S  *  G  F  L  F  *  Q  S  I  V  T  E  G  H  R  *  F  N  G  I  K  R  S  *  S  N  R  K   : G  P  L  R  N  *  K  L  T  T  T  *  I  D  *  C  S  T  L  Q  G  L  L  *  I  E  R  G  T  *  E  D  E  A  T  V  E  *  S  *  *  R  I  R  N  G  C  G  E  S  S  K  R  S  *  P  D  L  P  S  K  A  E  *   : G  Y  T  I  C  I  M  M  T  V  S  G  L  I  W  V  L  N  V  I  L  L  A  F  Y  A  R  K  *  P  S  G  S  R  Y  L  H  H  P  T  P  L  F  I  W  T  W  T  R  N  W  Y  I  I  I  C  L  G  Q  H  *  C  E  I  D  N  I  M  S  *  R  R  L  A  L  I  L  *  V  P  L  L  F  K  L  *  P  I  L  S  N  I  *  L  L  S  I  L  Q  N  *  *  Q  C  N  V  C  D  E  K  I  N  F  V  E  R  P  I  F  S  A  S  T  E  F  V  S  T  F  K  R  I  F  N  F  L  R  I  Y  Y  V  S  I  S  H  K  K  *  K  K  K  G  K  L  R  V  L  V  E  I  *  *  S  I  *  *  T  *  L  *  F  V  I  I  I  I  C  *  P  I  F  R  Y  N  Y  A  D  Y  F  L  V  F  V  *  L  A  C  L  *  N  L  E  F  V  *  Y  I  L  Y  N  F  Y  T  M  Q  F  Y  I  I  C  T  T  V  Y  T   </second_frame>
            <third_frame>   V  Q  K  Q  :  V  L  E  L  G  A  L  T  V  L  M  K  M  M  K  S  H  T  T  E  E  A  V  K  A  L  F  A  I  S  A  L  I  R  N  N  M  N  G  R  S  L  F  Y  Q  E  A  G  D  T  M  L  Q  :  E  V  L  S  N  S  N  L  D  I  R  L  H  K  K  S  L  F  L  I  A  D  L  A  E  S  Q  L  E  N  E  N  T  A  E  V  S  F  F  S  N  R  L  L  L  K  A  I  V  D  S  M  A  S  S  D  L  D  L  T  E  K  :  A  L  Y  A  T  K  N  L  L  L  L  R  S  T  D  V  Q  L  F  K  D  F  C  K  L  N  E  V  L  E  R  T  R  Q  Q  L  N  D  L  S  E  E  Y  A  M  D  V  E  S  L  R  K  E  V  N  L  T  F  L  Q  K  L  N  E  :  V  T  Q  S  A  L  *  *  Q  S  L  A  *  S  G  F  *  T  L  Y  C  L  H  S  T  R  G  S  N  Q  V  D  R  D  I  F  I  I  P  R  L  C  S  S  G  R  G  L  E  I  G  T  S  S  S  A  *  D  N  T  N  V  K  *  T  T  L  *  A  N  D  D  S  R  *  F  Y  K  C  L  Y  Y  L  S  Y  S  Q  F  C  R  I  F  N  F  Y  Q  S  C  K  I  D  S  N  V  M  Y  V  M  R  K  S  I  L  W  K  D  Q  Y  F  L  L  L  Q  N  L  Y  Q  P  L  R  E  Y  S  I  F  Y  E  F  I  M  Y  L  F  H  I  K  N  K  K  K  K  G  N  C  A  Y  *  *  K  Y  N  S  Q  F  S  E  H  N  Y  S  L  L  L  L  *  F  A  D  L  F  L  D  T  I  M  R  I  I  F  *  F  L  Y  N  *  H  V  C  R  I  *  S  L  Y  N  I  F  C  I  I  F  I  Q  C  N  F  I  *  Y  V  Q  L  F  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1689" stop="1700"/>
                    <exon start="1839" stop="1997"/>
                    <exon start="2077" stop="2262"/>
                    <exon start="2860" stop="3051"/>
                    <exon start="3128" stop="3148"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQKQVLELGALTVLMKMMKSHTTEEAVKALFAISALIRNNMNGRSLFYQEAGDTMLQEVLSNSNLDIRLHKKSLFLIADLAESQLENENTAEVSFFSNRLLLKAIVDSMASSDLDLTEKALYATKNLLLLRSTDVQLFKDFCKLNEVLERTRQQLNDLSEEYAMDVESLRKEVNLTFLQKLNEVTQSAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3353" stop="3598"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYKCLYYLSYSQFCRIFNFYQSCKIDSNVMYVMRKSILWKDQYFLLLQNLYQPLREYSIFYEFIMYLFHIKNKKKKGNCAY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="20272" PGL_stop="20801"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20272" e_stop="20801"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20272" e_stop="20801" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20272" stop="20801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M443-F" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20272" stop="20798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M255-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20272" stop="20762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M84-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATGGAATCTACATCATTTATAATGGCCATGTTGCACCAAAAAATCTAGCAAAGAAATACAATTTTGTTTAAGATTATGCATGTTGCAATGTTTGTCTTCAAAAAATCAGTATGTTTCTTTCCATCCATATTGTCCACCAAACGATTATGGGAATAGTATCGCGACCATCTCATCATTGGTGTTCTCCTCCAATTAAAAAAGAAACACAGTATTACTGGCTAAATTGAGATTCTAGTAATACTTTCCTATTAGTCATTTTCTCCATCTCACGAACCTAGAAAATAGTGAAAAAAATGAAAAAAGGAAAGCTGCAACTGAAAGCTTTGAAGATGATTGGAACTAAGACAGGTGGGATTGGGGGTAGAGAAACTCTCACATGCAGTACAATCAAGGGGAGCAAAGTACAACCACAATGAGAAATAGACAAAGAATACAATGTAGCAATACCTCCCATCAGGATTATTAGGTGATGTCAGAAATATGCACTTTGGTTTCTCACGTTCAACCACTTCGGTAATCCGTTCAACGT</gDNA_template>
            <first_frame> H  G  I  Y  I  I  Y  N  G  H  V  A  P  K  N  L  A  K  K  Y  N  F  V  *  D  Y  A  C  C  N  V  C  L  Q  K  I  S  M  F  L  S  I  H  I  V  H  Q  T  I  M  G  I  V  S  R  P  S  H  H  W  C  S  P  P  I  K  K  E  T  Q  Y  Y  W  L  N  *  D  S  S  N  T  F  L  L  V  I  F  S  I  S  R  T  *  K  I  V  K  K  M  K  K  G  K  L  Q  L  K  A  L  K  M  I  G  T  K  T  G  G  I  G  G  R  E  T  L  T  C  S  T  I  K  G  S  K  V  Q  P  Q  *  E  I  D  K  E  Y  N  V  A  I  P  P  I  R  I  I  R  *  C  Q  K  Y  A  L  W  F  L  T  F  N  H  F  G  N  P  F  N   </first_frame>
            <second_frame>  M  E  S  T  S  F  I  M  A  M  L  H  Q  K  I  *  Q  R  N  T  I  L  F  K  I  M  H  V  A  M  F  V  F  K  K  S  V  C  F  F  P  S  I  L  S  T  K  R  L  W  E  *  Y  R  D  H  L  I  I  G  V  L  L  Q  L  K  K  K  H  S  I  T  G  *  I  E  I  L  V  I  L  S  Y  *  S  F  S  P  S  H  E  P  R  K  *  *  K  K  *  K  K  E  S  C  N  *  K  L  *  R  *  L  E  L  R  Q  V  G  L  G  V  E  K  L  S  H  A  V  Q  S  R  G  A  K  Y  N  H  N  E  K  *  T  K  N  T  M  *  Q  Y  L  P  S  G  L  L  G  D  V  R  N  M  H  F  G  F  S  R  S  T  T  S  V  I  R  S  T  </second_frame>
            <third_frame>   W  N  L  H  H  L  *  W  P  C  C  T  K  K  S  S  K  E  I  Q  F  C  L  R  L  C  M  L  Q  C  L  S  S  K  N  Q  Y  V  S  F  H  P  Y  C  P  P  N  D  Y  G  N  S  I  A  T  I  S  S  L  V  F  S  S  N  *  K  R  N  T  V  L  L  A  K  L  R  F  *  *  Y  F  P  I  S  H  F  L  H  L  T  N  L  E  N  S  E  K  N  E  K  R  K  A  A  T  E  S  F  E  D  D  W  N  *  D  R  W  D  W  G  *  R  N  S  H  M  Q  Y  N  Q  G  E  Q  S  T  T  T  M  R  N  R  Q  R  I  Q  C  S  N  T  S  H  Q  D  Y  *  V  M  S  E  I  C  T  L  V  S  H  V  Q  P  L  R  *  S  V  Q  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0049A17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="21092" PGL_stop="20581"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21092" e_stop="20581"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="21092" e_stop="20581" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21092" stop="20581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M445-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21092" stop="20590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M255-F" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21092" stop="20616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M84-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTTCAGTTGCAG</gDNA_template>
            <first_frame> L  V  S  C  C  C  Y  L  I  I  S  I  S  N  K  *  C  I  A  W  *  Y  C  T  V  K  L  *  N  L  R  E  K  W  S  E  Y  S  E  N  A  E  T  L  H  S  D  K  V  V  F  K  T  W  R  K  M  K  *  A  E  N  F  *  F  S  S  M  T  *  L  L  L  E  L  L  S  I  R  *  S  V  A  L  S  N  W  Q  C  L  G  T  Q  T  L  A  W  T  L  N  G  L  P  K  W  L  N  V  R  N  Q  S  A  Y  F  *  H  H  L  I  I  L  M  G  G  I  A  T  L  Y  S  L  S  I  S  H  C  G  C  T  L  L  P  L  I  V  L  H  V  R  V  S  L  P  P  I  P  P  V  L  V  P  I  I  F  K  A  F  S  C   </first_frame>
            <second_frame>  L  L  V  A  V  V  T  *  S  S  A  F  P  I  N  D  V  L  L  G  N  T  V  L  *  N  C  K  I  *  E  R  N  G  V  N  T  V  K  M  Q  R  L  Y  I  Q  T  K  W  S  L  K  H  G  A  K  *  N  K  L  R  I  S  N  F  L  Q  *  H  N  Y  C  W  N  F  Y  Q  Y  V  N  L  *  L  Y  Q  T  G  S  A  *  E  P  R  L  *  P  G  R  *  T  D  Y  R  S  G  *  T  *  E  T  K  V  H  I  S  D  I  T  *  *  S  *  W  E  V  L  L  H  C  I  L  C  L  F  L  I  V  V  V  L  C  S  P  *  L  Y  C  M  *  E  F  L  Y  P  Q  S  H  L  S  *  F  Q  S  S  S  K  L  S  V  A  </second_frame>
            <third_frame>   C  *  L  L  L  L  L  N  H  Q  H  F  Q  *  M  M  Y  C  L  V  I  L  Y  C  E  T  V  K  F  K  R  E  M  E  *  I  Q  *  K  C  R  D  S  T  F  R  Q  S  G  L  *  N  M  A  Q  N  E  I  S  *  E  F  L  I  F  F  N  D  I  I  I  V  G  T  S  I  N  T  L  I  C  S  S  I  K  L  A  V  P  R  N  P  D  F  S  L  D  V  E  R  I  T  E  V  V  E  R  E  K  P  K  C  I  F  L  T  S  P  N  N  P  D  G  R  Y  C  Y  I  V  F  F  V  Y  F  S  L  W  L  Y  F  A  P  L  D  C  T  A  C  E  S  F  S  T  P  N  P  T  C  L  S  S  N  H  L  Q  S  F  Q  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20910" stop="20581"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFLIFFNDIIIVGTSINTLICSSIKLAVPRNPDFSLDVERITEVVEREKPKCIFLTSPNNPDGRYCYIVFFVYFSLWLYFAPLDCTACESFSTPNPTCLSSNHLQSFQLQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="37985" PGL_stop="32314"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37985" e_stop="37946"/>
            <exon e_start="36010" e_stop="35731"/>
            <exon e_start="35628" e_stop="35494"/>
            <exon e_start="34787" e_stop="34731"/>
            <exon e_start="33437" e_stop="33303"/>
            <exon e_start="32607" e_stop="32314"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.226" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.804" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.678" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37985" e_stop="37946" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.226">
            <gDNA_intron_boundary i_start="37945" i_stop="36011" i_length="1935"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36010" e_stop="35731" e_length="280"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.804">
            <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35628" e_stop="35494" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.980">
            <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34787" e_stop="34731" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.902" acc_prob="0.678">
            <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33437" e_stop="33303" e_length="135"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32607" e_stop="32314" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37985" stop="37946"/>
              <exon start="36010" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGGGGCCTCACAACAACAAACTCTGCTGCTTCTACCAG : AATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC : GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG : GAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG : CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG : GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTGTTTATATATGTCTCCATAAATGTTGTGTTTTTA</gDNA_template>
            <first_frame> S  G  A  S  Q  Q  Q  T  L  L  L  L  P   : E  *  R  V  L  W  G  P  T  L  V  S  A  R  *  E  E  V  Q  S  I  L  *  R  K  E  A  A  K  F  H  A  F  V  I  Q  M  *  N  L  L  G  K  N  C  F  L  Q  K  F  R  S  S  I  A  A  A  T  *  I  L  E  N  A  G  Q  F  F  P  L  Q  P  V  M  Q  M  I  R  M  T  Q  K  I  V  R  I  L  Q  K  M  K  M  N  P :   *  I  M  K  F  *  G  V  I  L  K  E  S  S  G  G  M  T  L  H  L  A  E  *  T  L  Q  L  *  *  G  I  N  M  E  G  P  M  M  F  N  *  L  R  R :   N  S  W  G  K  I  F  L  R  *  T  L  C  G  N  T  G  S  S :   D  L  F  R  *  L  K  K  S  T  Y  *  G  *  M  M  W  Q  T  H  *  N  A  G  E  L  F  H  I  F  V  I  A  L  R  S  *  K  S  G  L  G  *  G  R :   Q  *  A  F  S  S  I  W  M  N  P  E  A  V  Q  R  N  G  F  T  S  R  P  E  H  C  S  S  S  M  L  I  V  S  N  T  *  V  D  I  *  Y  K  K  V  E  E  T  L  V  F  F  I  N  Y  Y  F  I  V  Q  T  Q  F  F  I  L  F  P  F  D  V  N  Y  T  L  L  Q  T  T  A  Y  L  L  S  C  N  C  L  Y  M  S  P  *  M  L  C  F   </first_frame>
            <second_frame>  L  G  P  H  N  N  K  L  C  C  F  Y  Q  :  N  D  E  F  S  G  D  P  P  S  Y  L  L  V  R  R  R  S  R  A  Y  C  E  G  K  K  L  Q  N  F  M  L  S  L  Y  R  C  R  I  F  L  E  R  I  V  S  F  K  N  S  E  V  Q  *  L  P  P  P  K  Y  *  K  M  L  G  S  F  F  R  C  N  R  *  C  K  *  S  G  *  L  R  R  *  *  E  S  S  R  K  *  K  *  I   : R  K  *  *  N  F  K  G  *  S  *  K  N  R  R  A  G  *  L  C  I  *  R  N  R  P  C  S  S  D  K  E  *  I  W  K  V  L  *  C  S  I  D  *  E   : G  I  H  G  E  K  S  S  C  V  K  R  Y  V  E  I  Q  G  A   : A  I  F  S  V  N  *  R  R  V  P  T  E  A  R  *  C  G  K  H  I  E  M  L  G  S  C  F  T  Y  S  *  *  P  *  E  V  E  R  A  A  S  D  R  E   : G  S  E  H  F  H  R  Y  G  *  I  R  R  P  C  K  G  M  D  L  Q  V  D  Q  N  I  V  A  P  Q  C  *  *  L  A  I  H  R  *  I  Y  S  T  K  K  L  K  K  H  L  Y  S  L  L  I  T  I  S  L  C  R  H  N  F  L  Y  C  F  H  L  M  S  I  T  P  F  C  R  Q  Q  H  I  C  C  P  A  I  V  Y  I  C  L  H  K  C  C  V  F  </second_frame>
            <third_frame>   W  G  L  T  T  T  N  S  A  A  S  T  R :   M  T  S  S  L  G  T  H  P  R  I  C  S  L  G  G  G  P  E  H  I  V  K  E  R  S  C  K  I  S  C  F  R  Y  T  D  V  E  S  S  W  K  E  L  F  P  S  K  I  Q  K  F  N  S  C  R  H  L  N  T  R  K  C  W  A  V  F  S  A  A  T  G  D  A  N  D  P  D  D  S  E  D  S  K  N  P  P  E  N  E  N  E  S  :  V  N  N  E  I  L  R  G  N  L  E  R  I  V  G  R  D  D  S  A  F  S  G  I  D  L  A  A  L  I  R  N  K  Y  G  R  S  Y  D  V  Q  L  I  K  K  :  E  F  M  G  K  N  L  L  A  L  N  V  M  W  K  Y  R  E  Q  :  R  S  F  P  L  T  E  E  E  Y  L  L  R  L  D  D  V  A  N  T  L  K  C  W  G  A  V  S  H  I  R  N  S  L  E  K  L  K  E  R  P  R  I  G  K  :  A  V  S  I  F  I  D  M  D  E  S  G  G  R  A  K  E  W  I  Y  K  *  T  R  T  L  *  L  L  N  V  D  S  *  Q  Y  I  G  R  Y  I  V  Q  K  S  *  R  N  T  C  I  L  Y  *  L  L  F  H  C  A  D  T  I  F  Y  I  V  S  I  *  C  Q  L  H  P  S  A  D  N  S  I  F  V  V  L  Q  L  F  I  Y  V  S  I  N  V  V  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37983" stop="37946"/>
                    <exon start="36010" stop="35731"/>
                    <exon start="35628" stop="35494"/>
                    <exon start="34787" stop="34731"/>
                    <exon start="33437" stop="33303"/>
                    <exon start="32607" stop="32542"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WGLTTTNSAASTRMTSSLGTHPRICSLGGGPEHIVKERSCKISCFRYTDVESSWKELFPSKIQKFNSCRHLNTRKCWAVFSAATGDANDPDDSEDSKNPPENENESVNNEILRGNLERIVGRDDSAFSGIDLAALIRNKYGRSYDVQLIKKEFMGKNLLALNVMWKYREQRSFPLTEEEYLLRLDDVANTLKCWGAVSHIRNSLEKLKERPRIGKAVSIFIDMDESGGRAKEWIYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36013" e_stop="35731"/>
            <exon e_start="35628" e_stop="35494"/>
            <exon e_start="34787" e_stop="34731"/>
            <exon e_start="33437" e_stop="33321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.804" e_score="0.993"/>
          <exon-intron don_prob="0.979" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.678" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="36013" e_stop="35731" e_length="283"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.804">
            <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35628" e_stop="35494" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.980">
            <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34787" e_stop="34731" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.678">
            <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33437" e_stop="33321" e_length="117"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36013" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC : GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG : GAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG : CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAG</gDNA_template>
            <first_frame> Q  N  D  E  F  S  G  D  P  P  S  Y  L  L  V  R  R  R  S  R  A  Y  C  E  G  K  K  L  Q  N  F  M  L  S  L  Y  R  C  R  I  F  L  E  R  I  V  S  F  K  N  S  E  V  Q  *  L  P  P  P  K  Y  *  K  M  L  G  S  F  F  R  C  N  R  *  C  K  *  S  G  *  L  R  R  *  *  E  S  S  R  K  *  K  *  I   : R  K  *  *  N  F  K  G  *  S  *  K  N  R  R  A  G  *  L  C  I  *  R  N  R  P  C  S  S  D  K  E  *  I  W  K  V  L  *  C  S  I  D  *  E   : G  I  H  G  E  K  S  S  C  V  K  R  Y  V  E  I  Q  G  A   : A  I  F  S  V  N  *  R  R  V  P  T  E  A  R  *  C  G  K  H  I  E  M  L  G  S  C  F  T  Y  S  *  *  P  *  E  V  E  R  </first_frame>
            <second_frame>  R  M  T  S  S  L  G  T  H  P  R  I  C  S  L  G  G  G  P  E  H  I  V  K  E  R  S  C  K  I  S  C  F  R  Y  T  D  V  E  S  S  W  K  E  L  F  P  S  K  I  Q  K  F  N  S  C  R  H  L  N  T  R  K  C  W  A  V  F  S  A  A  T  G  D  A  N  D  P  D  D  S  E  D  S  K  N  P  P  E  N  E  N  E  S  :  V  N  N  E  I  L  R  G  N  L  E  R  I  V  G  R  D  D  S  A  F  S  G  I  D  L  A  A  L  I  R  N  K  Y  G  R  S  Y  D  V  Q  L  I  K  K  :  E  F  M  G  K  N  L  L  A  L  N  V  M  W  K  Y  R  E  Q  :  R  S  F  P  L  T  E  E  E  Y  L  L  R  L  D  D  V  A  N  T  L  K  C  W  G  A  V  S  H  I  R  N  S  L  E  K  L  K  E </second_frame>
            <third_frame>   E  *  R  V  L  W  G  P  T  L  V  S  A  R  *  E  E  V  Q  S  I  L  *  R  K  E  A  A  K  F  H  A  F  V  I  Q  M  *  N  L  L  G  K  N  C  F  L  Q  K  F  R  S  S  I  A  A  A  T  *  I  L  E  N  A  G  Q  F  F  P  L  Q  P  V  M  Q  M  I  R  M  T  Q  K  I  V  R  I  L  Q  K  M  K  M  N  P :   *  I  M  K  F  *  G  V  I  L  K  E  S  S  G  G  M  T  L  H  L  A  E  *  T  L  Q  L  *  *  G  I  N  M  E  G  P  M  M  F  N  *  L  R  R :   N  S  W  G  K  I  F  L  R  *  T  L  C  G  N  T  G  S  S :   D  L  F  R  *  L  K  K  S  T  Y  *  G  *  M  M  W  Q  T  H  *  N  A  G  E  L  F  H  I  F  V  I  A  L  R  S  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36012" stop="35731"/>
                    <exon start="35628" stop="35494"/>
                    <exon start="34787" stop="34731"/>
                    <exon start="33437" stop="33321"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMTSSLGTHPRICSLGGGPEHIVKERSCKISCFRYTDVESSWKELFPSKIQKFNSCRHLNTRKCWAVFSAATGDANDPDDSEDSKNPPENENESVNNEILRGNLERIVGRDDSAFSGIDLAALIRNKYGRSYDVQLIKKEFMGKNLLALNVMWKYREQRSFPLTEEEYLLRLDDVANTLKCWGAVSHIRNSLEKLKE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="91684" PGL_stop="92149"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91684" e_stop="92149"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91684" e_stop="92149" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91684" stop="92149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M104-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTAAAATCAACAGGCATATTGCTTTGCAACTTGGTCTCTTTTGATCTCTGAACGTCGAATTTCATATACTGATTAGCATGGAAAGTAACTTCAGCGGCTGATTCTGACTGAAATGCTTCACAATTTACAACTAATTTCTCTTTCCCAGCTTGCTTCTCCCCTGTACTAAAATCAACCGGCATATTGCTTTGCAACTCGGCCTCTTTTGATCTCTGAACGCCGACTTTCATATACAGATTAGCATGGAAAGTTTCTCCAGCAACTGATTCAGGCTGAAATCCTTCACAATTTACAGCTATTTTCTCTTTCCCAACTTGCTTCTCCCTTGCATTTAAATGAATTTTCTTACTACATTTCTTCTTTGCCTTGACTATTTCCCGAAACTCTAGCTTCTTAGATTGATAAGCTAGGGAAGCCTCTTCATACGTGCCAAAAGTCCCCAACCAAATCTTTTTCTTACTAAT</gDNA_template>
            <first_frame> Y  *  N  Q  Q  A  Y  C  F  A  T  W  S  L  L  I  S  E  R  R  I  S  Y  T  D  *  H  G  K  *  L  Q  R  L  I  L  T  E  M  L  H  N  L  Q  L  I  S  L  S  Q  L  A  S  P  L  Y  *  N  Q  P  A  Y  C  F  A  T  R  P  L  L  I  S  E  R  R  L  S  Y  T  D  *  H  G  K  F  L  Q  Q  L  I  Q  A  E  I  L  H  N  L  Q  L  F  S  L  S  Q  L  A  S  P  L  H  L  N  E  F  S  Y  Y  I  S  S  L  P  *  L  F  P  E  T  L  A  S  *  I  D  K  L  G  K  P  L  H  T  C  Q  K  S  P  T  K  S  F  S  Y  *  </first_frame>
            <second_frame>  T  K  I  N  R  H  I  A  L  Q  L  G  L  F  *  S  L  N  V  E  F  H  I  L  I  S  M  E  S  N  F  S  G  *  F  *  L  K  C  F  T  I  Y  N  *  F  L  F  P  S  L  L  L  P  C  T  K  I  N  R  H  I  A  L  Q  L  G  L  F  *  S  L  N  A  D  F  H  I  Q  I  S  M  E  S  F  S  S  N  *  F  R  L  K  S  F  T  I  Y  S  Y  F  L  F  P  N  L  L  L  P  C  I  *  M  N  F  L  T  T  F  L  L  C  L  D  Y  F  P  K  L  *  L  L  R  L  I  S  *  G  S  L  F  I  R  A  K  S  P  Q  P  N  L  F  L  T  N </second_frame>
            <third_frame>   L  K  S  T  G  I  L  L  C  N  L  V  S  F  D  L  *  T  S  N  F  I  Y  *  L  A  W  K  V  T  S  A  A  D  S  D  *  N  A  S  Q  F  T  T  N  F  S  F  P  A  C  F  S  P  V  L  K  S  T  G  I  L  L  C  N  S  A  S  F  D  L  *  T  P  T  F  I  Y  R  L  A  W  K  V  S  P  A  T  D  S  G  *  N  P  S  Q  F  T  A  I  F  S  F  P  T  C  F  S  L  A  F  K  *  I  F  L  L  H  F  F  F  A  L  T  I  S  R  N  S  S  F  L  D  *  *  A  R  E  A  S  S  Y  V  P  K  V  P  N  Q  I  F  F  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0049A17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="93116" PGL_stop="92663"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93116" e_stop="92663"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93116" e_stop="92663" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93116" stop="92663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M104-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAATGCAGAAGAAAATCGAAGCTCTGTTTCTGCTCACCACATGTATGATAAAATGCCAAGCTCAAATTCCACTAACAAAAGTGTTCCTGCTGCTGAAAGGAGTGACAGTATAGTTTTGGGTTTGCAGAATGCAGCAAATTTTTCTGGGGTTCGGAAGAGGAAACGAGGTGAGTATGTTGCTGAAAAATGGGACCCGATTACGAAAAAACGGGTTTGTTTGGGTACATTCAACACTGCTGAAGAAGCTTCCGAGGCTTATTTAGCTAAGCAATGCGAATTTTCTACTGCCCGCCACATGCTTGATGAAATGCCAAGCTCAAATTCGACTAACAAAACTGCTAATGCTGCTGCCGGTTCCACTGATGCTGATCATGGGAAAAAGCCCCTTATTCAGGAGATATCTTTCAGTCACAAAAGCATGTTACTTGGAGCTGAATGGCATAACATGGGG</gDNA_template>
            <first_frame> S  K  C  R  R  K  S  K  L  C  F  C  S  P  H  V  *  *  N  A  K  L  K  F  H  *  Q  K  C  S  C  C  *  K  E  *  Q  Y  S  F  G  F  A  E  C  S  K  F  F  W  G  S  E  E  E  T  R  *  V  C  C  *  K  M  G  P  D  Y  E  K  T  G  L  F  G  Y  I  Q  H  C  *  R  S  F  R  G  L  F  S  *  A  M  R  I  F  Y  C  P  P  H  A  *  *  N  A  K  L  K  F  D  *  Q  N  C  *  C  C  C  R  F  H  *  C  *  S  W  E  K  A  P  Y  S  G  D  I  F  Q  S  Q  K  H  V  T  W  S  *  M  A  *  H  G  </first_frame>
            <second_frame>  A  N  A  E  E  N  R  S  S  V  S  A  H  H  M  Y  D  K  M  P  S  S  N  S  T  N  K  S  V  P  A  A  E  R  S  D  S  I  V  L  G  L  Q  N  A  A  N  F  S  G  V  R  K  R  K  R  G  E  Y  V  A  E  K  W  D  P  I  T  K  K  R  V  C  L  G  T  F  N  T  A  E  E  A  S  E  A  Y  L  A  K  Q  C  E  F  S  T  A  R  H  M  L  D  E  M  P  S  S  N  S  T  N  K  T  A  N  A  A  A  G  S  T  D  A  D  H  G  K  K  P  L  I  Q  E  I  S  F  S  H  K  S  M  L  L  G  A  E  W  H  N  M  G </second_frame>
            <third_frame>   Q  M  Q  K  K  I  E  A  L  F  L  L  T  T  C  M  I  K  C  Q  A  Q  I  P  L  T  K  V  F  L  L  L  K  G  V  T  V  *  F  W  V  C  R  M  Q  Q  I  F  L  G  F  G  R  G  N  E  V  S  M  L  L  K  N  G  T  R  L  R  K  N  G  F  V  W  V  H  S  T  L  L  K  K  L  P  R  L  I  *  L  S  N  A  N  F  L  L  P  A  T  C  L  M  K  C  Q  A  Q  I  R  L  T  K  L  L  M  L  L  P  V  P  L  M  L  I  M  G  K  S  P  L  F  R  R  Y  L  S  V  T  K  A  C  Y  L  E  L  N  G  I  T  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93115" stop="92663"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANAEENRSSVSAHHMYDKMPSSNSTNKSVPAAERSDSIVLGLQNAANFSGVRKRKRGEYVAEKWDPITKKRVCLGTFNTAEEASEAYLAKQCEFSTARHMLDEMPSSNSTNKTANAAAGSTDADHGKKPLIQEISFSHKSMLLGAEWHNMG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 35 chains have been computed
$ 
$ memory statistics:
$ 20856 bytes spliced alignments in total
$ 11 spliced alignments have been stored
$ 1896 bytes was the average size of a spliced alignment
$ 11880 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1980 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 36 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-20 05:28:47
-->
