<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-04 08:33:56"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542858" ref_strand="+" ref_description="SGN-E542858 [TUS-64-G1](-)">
      <seq>gaacagatttcacagaacagacacgttccttgctgaaaattgctataaaggaagtcaattttgattttcaaacactgaaaattttccttctcngtattatttttctctaaaaaaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgctgttctgaagtttgctgaagttaaagaagtttgagaaaaaaaaagactaactcaagtcaaacaaatgctggaatagtaagtgctgcaacaacatcggctgcacataatcattcagatgctatcttagcggcggctgagaaacctgcagagttttctggagtcgactttgagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcattaatgagaatgttcctgtttatcagatgaaactccggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgaacaacaatgccaaaacctcaaagaactcttggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggtaaaatttttggactataagatgatagacaataagactgtcgtcacccaagttcaagaattgcaggtcataatccatgatctgtgctgaatgtataaatttatttaatgcctatgttagaaatattaagttttcccttaataaatttatttaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="576" stop="21661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="875" g_stop="1070" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1071" i_stop="1498" i_length="428">
            <donor d_prob="0.807" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1499" g_stop="2068" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="739" r_length="552" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2069" i_stop="2810" i_length="742">
            <donor d_prob="0.900" d_score="0.90"/>
            <acceptor a_prob="0.104" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2811" g_stop="2828" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="757" r_length="18" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E542858" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.036" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="875" e_stop="1070"/>
          <exon e_start="1499" e_stop="2068"/>
          <exon e_start="2811" e_stop="2828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGATTTCACTGAACAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAGAAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGACTATTGAAGATCTCATCGTAAGGTTGAGAATCGAAGAGGATAATAAGGTTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAACATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATTAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGATGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATA</genome_strand>
        <mrna_strand>GAACAGATTTCACAGAACAGACACGTTCCTTGCTGAAAATTGCTAT-AAAGGAAGTCAA-TTTTGA-TTTTCAAACACTGAAAA--TTTTCCTTCTCNGTATT-ATTTTTCTCT-AAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTGAAGTTTGCTGAAGTTAAAGAAGTTT--G............................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAAAAAAGACTAACTCAAGTCAAACAAATGCTGGAATAGTAAGTGCTGCAACAACATCGGCTGCACATAATCATTCAGATGCTATCTTAGCGGCGGCTGAGAAACCTGCAGAGTTTTCTGGAGTCGACTTTGAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTT-TATCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGA-----AC-------A-A-CAATGCCAAAACCTC-AAAGAACTCTTGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGG-TAAAATTTTTGGACTATAAGATGATAGACAATAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCT--GTGCTGAATGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATAAATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262710" ref_strand="+" ref_description="SGN-E262710 [cLEG-63-E14]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="594" stop="1806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="893" g_stop="1505" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E262710" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="893" e_stop="1505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369760" ref_strand="+" ref_description="SGN-E369760 [TUS-25-O3]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="594" stop="1776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="893" g_stop="1476" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E369760" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="893" e_stop="1476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255327" ref_strand="+" ref_description="SGN-E255327 [cLEG-30-E2]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgatttttgaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="594" stop="1713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="893" g_stop="1413" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E255327" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="893" e_stop="1413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTGAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="603" stop="7202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="903" g_stop="1305" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="903" e_stop="1305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGA</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254845" ref_strand="+" ref_description="SGN-E254845 [cLEG-33-L11]">
      <seq>aggaagtcaaattttgattttttaaacactgaaaatttggctttcggtgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtaccagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagaataaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagaattgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="624" stop="1809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="924" g_stop="1523" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E254845" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="924" e_stop="1523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTA-CAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTC</genome_strand>
        <mrna_strand>AGGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTGGCTTTCGGTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACCAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGAATAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGAATTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273518" ref_strand="+" ref_description="SGN-E273518 [cLEN-6-E15]">
      <seq>ggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="625" stop="1887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="925" g_stop="1587" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E273518" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="925" e_stop="1587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGC</genome_strand>
        <mrna_strand>GGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="658" stop="7195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="958" g_stop="1292" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="958" e_stop="1292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCT</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTG-----G-TTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263584" ref_strand="+" ref_description="SGN-E263584 [cLEG-60-L13]">
      <seq>tgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="725" stop="2039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1025" g_stop="1739" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E263584" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1025" e_stop="1739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACG</genome_strand>
        <mrna_strand>TGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261066" ref_strand="+" ref_description="SGN-E261066 [cLEG-65-C11]">
      <seq>tttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcataaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagatttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="765" stop="2078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1065" g_stop="1778" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E261066" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1065" e_stop="1778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTT</genome_strand>
        <mrna_strand>TTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCATAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGATTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276669" ref_strand="+" ref_description="SGN-E276669 [cLEN-14-A16]">
      <seq>ttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="766" stop="2008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1066" g_stop="1708" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E276669" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1066" e_stop="1708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTG</genome_strand>
        <mrna_strand>TTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253427" ref_strand="+" ref_description="SGN-E253427 [cLEG-24-L5]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctggttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="882" stop="2100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1182" g_stop="1800" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E253427" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1182" e_stop="1800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</genome_strand>
        <mrna_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTG-----G-TTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375521" ref_strand="+" ref_description="SGN-E375521 [TUS-34-B10]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="882" stop="1676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1182" g_stop="1377" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E375521" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1182" e_stop="1377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAGAA-ATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATT</genome_strand>
        <mrna_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262550" ref_strand="+" ref_description="SGN-E262550 [cLEG-63-C22]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctgggacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaactgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaattatattttgagtggtctgcaagatgatctgtancatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaacagaagatgccggaaatgagaaaatcattgtgggcaaatttctagacttttagatgatagacagtaagactgtcgtcacccaagtttcagaattgcaggttataatccatgatctccttgctgaaaggatgattgtgaatgatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="1001" stop="2406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1301" g_stop="2012" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2013" i_stop="2084" i_length="72">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2085" g_stop="2106" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="727" r_length="22" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E262550" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1301" e_stop="2012"/>
          <exon e_start="2085" e_stop="2106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGATG-CAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATGATGCTTT</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAA-CTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGT-AAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTANCATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTAC-AAACAGAAGATGCCGGAAATGAGAAAATCATTGTGG-GCAAATTTCTAGACTTTTAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTTCAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAA........................................................................GGATGATTGTGAATGATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258047" ref_strand="+" ref_description="SGN-E258047 [cLEG-48-K15]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="1001" stop="2046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1301" g_stop="1746" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E258047" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1301" e_stop="1746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTG</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261540" ref_strand="+" ref_description="SGN-E261540 [cLEG-57-K8]">
      <seq>taaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctcctattgtggaaggactttaaaaactacttgaaacacaaacgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="1035" stop="2481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1335" g_stop="2012" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2013" i_stop="2084" i_length="72">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2085" g_stop="2181" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="772" r_length="98" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E261540" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1335" e_stop="2012"/>
          <exon e_start="2085" e_stop="2181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCC-ATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAA</genome_strand>
        <mrna_strand>TAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGC-AAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251204" ref_strand="+" ref_description="SGN-E251204 [cLEG-10-L14]">
      <seq>tcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="1217" stop="2496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1517" g_stop="2012" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2013" i_stop="2084" i_length="72">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2085" g_stop="2196" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="608" r_length="112" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E251204" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1517" e_stop="2012"/>
          <exon e_start="2085" e_stop="2196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGACTATTGA</genome_strand>
        <mrna_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGC-AAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419244" ref_strand="-" ref_description="SGN-E419244 [STM-29-A12]">
      <seq>tcaagagatggcagcaaaagatgtctttctatctgactacattgagtctgcagaggttcattaatgagaacgttcctgttatgtcggatgaaactccgcctgaagaacgattcttggtaacagaagcatggacacattctgattttttgtgtaaaaattatattctgagtggcctgcaggatgatctatacaatgtgtacagtaatgtgaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaggatgccggaatgaagaaatttattgtggcaaagtttctggactataagatgatagacagtaagaccgtcgtcacccaagttcaagaattgcaggtcataatccatgatctccttgctgaaggattggttgtgaatgatgcttttcaagtggctgccattatagagaagttacctccattgtggaaggacttcaaaaactacttgaaacataaacgcaaggagatgactgttgaagatctcatggtaaggctgagaatcgaagaggataacaaggccgcagaaaagaggtcgcgtggtaattcagcaatatcaggagtaaatattgtgaagaagatcccacaaaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="1331" stop="2622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1632" g_stop="2012" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2013" i_stop="2084" i_length="72">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2085" g_stop="2320" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="616" r_length="235" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E419244" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419244" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1632" e_stop="2012"/>
          <exon e_start="2085" e_stop="2320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGACTATTGAAGATCTCATCGTAAGGTTGAGAATCGAAGAGGATAATAAGGTTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGA</genome_strand>
        <mrna_strand>TCAAGAGATGGCAGCAAAAGATGTCTTTCTATCTGACTACATTGAGTCTGCAGAGGTTCATTAATGAGAACGTTCCTGTTATGTCGGATGAAACTCCGCCTGAAGAACGATTCTTGGTAACAGAAGCATGGACACATTCTGATTTTTTGTGTAAAAATTATATTCTGAGTGGCCTGCAGGATGATCTATACAATGTGTACAGTAATGTGAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAGGATGCCGGAATGAAGAAATTTATTGTGGC-AAAGTTTCTGGACTATAAGATGATAGACAGTAAGACCGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGGTTGTGAATGATGCTTTTCAAGTGGCTGCCATTATAGAGAAGTTACCTCCATTGTGGAAGGACTTCAAAAACTACTTGAAACATAAACGCAAGGAGATGACTGTTGAAGATCTCATGGTAAGGCTGAGAATCGAAGAGGATAACAAGGCCGCAGAAAAGAGGTCGCGTGGTAATTCAGCAATATCAGGAGTAAATATTG-TGAAGAAGATCCCACAAAATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369759" ref_strand="+" ref_description="SGN-E369759 [TUS-25-O3](-)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="1908" stop="3216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2208" g_stop="2916" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E369759" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2208" e_stop="2916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGTTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAACATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATTAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGATGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395006" ref_strand="-" ref_description="SGN-E395006 [TUS-34-O4]">
      <seq>aagaaattcaatggaaactgctttaattgtggtaaacatggtcataggggtaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttctttttaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="2057" stop="3216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2357" g_stop="2916" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="581"/>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E395006" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395006" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2357" e_stop="2916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATTAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGATGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>AAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGGTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250407" ref_strand="-" ref_description="SGN-E250407 [cLEG-6-H3]">
      <seq>aattgtggtaaacatggtcatagggctaatgaaagccggggtcttaagaaggacaagataaagaaggatcaagcaaacttgggtgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcagttacagatgagaaattatttatggccaactccgctgttgcaaaggtgtaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttcatatgaataaagattttgcttcttattaaaaaaaaaaaaaaaaaaagactcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="2081" stop="3216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2381" g_stop="2916" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="556"/>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E250407" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250407" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2381" e_stop="2916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTGGTAAACATGGTCATAGGGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATTAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGATGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>AATTGTGGTAAACATGGTCATAGGGCTAATGAAAGCCGGGGTCTTAAGAAGGACAAGATAAAGAAGGATCAAGCAAACTTGGGTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCAGTTACAGATGAGAAATTATTTATGGCCAACTCCGCTGTTGCAAAGGTGTAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTCATATGAATAAAGATTTTGCTTCTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375520" ref_strand="+" ref_description="SGN-E375520 [TUS-34-B10](-)">
      <seq>atgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattttggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactttagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtttcatatgttccagaattgagaaataatttagtttcaattccaattttgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttttttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="2113" stop="3216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2413" g_stop="2916" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="505" polyA_stop="524"/>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E375520" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2413" e_stop="2916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATTAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGATGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>ATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTTTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTTTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTTTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="6196" stop="7022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6495" g_stop="6722" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6495" e_stop="6722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCTTTCTCTACATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702785" ref_strand="+" ref_description="SGN-E702785 [FA19CG07]">
      <seq>gaaaatgttcctcagattactccatagatccggaatcacttctaaatcagacatattgttcctattttcatcgaaatcaagctcgttggatcacgccattgttgaagagaacaactcctttttgaagctcatcaatggctactacaaatacattaataactcaagttctgacccgacccgatttgttaattcaacttttgacccgacccagtttgtgatttcgagtaagaaagagaaggaaagtggagaacccatttggggtaaaaaaattcgggtttatgaggattttggtaactcaaccgagttaagtctaactcagttgagttatggttcggtggtgggttttgatacgggtgaacttgacccggagaactcgttatccgggttcttggatcatgttccgatgagtttaagaagatgggcttgttacccgatgttattgggtcgggtacggagaaattacaaacatgtccttttagtagacctaaaggaatatctcgtacttggtgattcactaagccaactcaagaatcgtagtccggagtccgttatactgaccacattacctgctcgaaaaaagaactccgagaaaaaatccgttaactcggggtttgtacttggtggtgcacgtggagtgagacgattggctaatgcaatgttaacggaaatcgttcgagctataacacaacataagaagagaaacatggtgtctgaatcaacattgttcaaccaacttgttgcgaatgagtttatgttgaagaatgtgaatttgattgtatcgagtgagtcaactcatgaactaagttcactcaccgggttaatgaactcaaactcgaaatcgggttcgagctcattttctatttctaaattcctattgttaggcgtgggaatagtantttggatattagttatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="-" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="17415" stop="15899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17115" g_stop="16199" g_length="917"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="916" r_length="916" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="-" ref_id="SGN-E702785" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17115" e_stop="16199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATTGTTGAAGAGAACAACTCCTTTTTGAAGCTCATCAATGGCTACTACAAATACATTAATAACTCAAGTTCTGACCCGACCCGATTTGTTAATTCAACTTTTGACCCGACCCAGTTTGTGATTTCGAGTAAGAAAGAGAAGGAAAGTGGAGAACCCATTTGGGGTAAAAAAATTCGGGTTTATGAGGATTTTGGTAACTCAACCGAGTTAAGTCTAACTCAGTTGAGTTATGGTTCGGTGGTGGGTTTTGATACGGGTGAACTTGACCCGGAGAACTCGTTATCCGGGTTCTTGGATCATGTTCCGATGAGTTTAAGAAGATGGGCTTGTTACCCGATGTTATTGGGTCGGGTACGGAGAAATTACAAACATGTCCTTTTAGTAGACCTAAAGGAATATCTCGTACTTGGTGATTCACTAAGCCAACTCAAGAATCGTAGTCCGGAGTCCGTTATACTGACCACATTACCTGCTCGAAAAAAGAACTCCGAGAAAAAATCCGTTAACTCGGGGTTTGTACTTGGTGGTGCACGTGGAGTGAGACGATTGGCTAATGCAATGTTAACGGAAATCGTTCGAGCTATAACACAACATAAGAAGAGAAACATGGTGTCTGAATCAACATTGTTCAACCAACTTGTTGCGAATGAGTTTATGTTGAAGAATGTGAATTTGATTGTATCGAGTGAGTCAACTCATGAACTAAGTTCACTCACCGGGTTAATGAACTCAAACTCGAAATCGGGTTCGAGCTCATTTTCTATTTCTAAATTTCCTATTGTTAGGCGTGGGAATAGTAATTTGGATATTAGTTATGTTT</genome_strand>
        <mrna_strand>GAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATTGTTGAAGAGAACAACTCCTTTTTGAAGCTCATCAATGGCTACTACAAATACATTAATAACTCAAGTTCTGACCCGACCCGATTTGTTAATTCAACTTTTGACCCGACCCAGTTTGTGATTTCGAGTAAGAAAGAGAAGGAAAGTGGAGAACCCATTTGGGGTAAAAAAATTCGGGTTTATGAGGATTTTGGTAACTCAACCGAGTTAAGTCTAACTCAGTTGAGTTATGGTTCGGTGGTGGGTTTTGATACGGGTGAACTTGACCCGGAGAACTCGTTATCCGGGTTCTTGGATCATGTTCCGATGAGTTTAAGAAGATGGGCTTGTTACCCGATGTTATTGGGTCGGGTACGGAGAAATTACAAACATGTCCTTTTAGTAGACCTAAAGGAATATCTCGTACTTGGTGATTCACTAAGCCAACTCAAGAATCGTAGTCCGGAGTCCGTTATACTGACCACATTACCTGCTCGAAAAAAGAACTCCGAGAAAAAATCCGTTAACTCGGGGTTTGTACTTGGTGGTGCACGTGGAGTGAGACGATTGGCTAATGCAATGTTAACGGAAATCGTTCGAGCTATAACACAACATAAGAAGAGAAACATGGTGTCTGAATCAACATTGTTCAACCAACTTGTTGCGAATGAGTTTATGTTGAAGAATGTGAATTTGATTGTATCGAGTGAGTCAACTCATGAACTAAGTTCACTCACCGGGTTAATGAACTCAAACTCGAAATCGGGTTCGAGCTCATTTTCTATTTCTAAA-TTCCTATTGTTAGGCGTGGGAATAGTANTTTGGATATTAGTTATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269665" ref_strand="+" ref_description="SGN-E269665 [cLEM-17-G3]">
      <seq>gccttcgttttcattcaaatcgattaatgcaattcgtaatcgttcaacttcatctcatctcatctcaaaagcacaatccacaatttcaatttgtgtattgttgattttcatcactcttttactcttcactctatcaacttttgaacccaacaattcgttaaatcaaaaacgaaaacccccaattcttaatttccaagagaaattgattttcgcacctgcattgcaaggtatgggttcgttgtatcgaagaggaacaagggctatgaatgacttaatcgtagctcatgtaatcgaatccgtaacggagatcgaactgaaaatgttcctcagattactccatagatccggaatcacttctaaatcagacatattgttcctattttcatcgaaatcaagctcgttggatcacgccattgttgaagagaacaactcctttttgaagctcatcaatggctactacaaatacattaataactcaagttctgacccgacccgatttgttaattcaacttttgacccgacccagtttgtgatttcgagtaagaaagagaaggaaagtggagaacccatttggggtaaaaaaattcgggtttatgaggattttggtaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="-" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="17730" stop="16520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17430" g_stop="16820" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="-" ref_id="SGN-E269665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17430" e_stop="16820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATTGTTGAAGAGAACAACTCCTTTTTGAAGCTCATCAATGGCTACTACAAATACATTAATAACTCAAGTTCTGACCCGACCCGATTTGTTAATTCAACTTTTGACCCGACCCAGTTTGTGATTTCGAGTAAGAAAGAGAAGGAAAGTGGAGAACCCATTTGGGGTAAAAAAATTCGGGTTTATGAGGATTTTGGTAACT</genome_strand>
        <mrna_strand>GCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATTGTTGAAGAGAACAACTCCTTTTTGAAGCTCATCAATGGCTACTACAAATACATTAATAACTCAAGTTCTGACCCGACCCGATTTGTTAATTCAACTTTTGACCCGACCCAGTTTGTGATTTCGAGTAAGAAAGAGAAGGAAAGTGGAGAACCCATTTGGGGTAAAAAAATTCGGGTTTATGAGGATTTTGGTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304656" ref_strand="+" ref_description="SGN-E304656 [cLEX-11-I1]">
      <seq>aaatcgattaatgcaattcgtaatcgttcaacttcatctcatctcatctcaaaagcacaatccacaatttcaatttgtgtattgttgattttcatcactcttttactcttcactctatcaacttttgaacccaacaattcgttaaatcaaaaacgaaaacccccaattcttaatttccaagagaaattgattttcgcacctgcattgcaaggtatgggttcgttgtatcgaagaggaacaagggctatgaatgacttaatcgtagctcatgtaatcgaatccgtaacggagatcgaactgaaaatgttcctcagattactccatagatccggaatcacttctaaatcagacatattgttcctattttcatcgaaatcaagctcgttggatcacgccattgttgaagagaacaactcctttttgaagctcatcaatggctactacaaatacattaataactcaagttctgacccgacccgatttgttaattcaacttttgacccgacccagtttgtgatttcgagtaagaaagagaaggaaagtggagaacccatttggggtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="-" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="17714" stop="16547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17414" g_stop="16847" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="-" ref_id="SGN-E304656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17414" e_stop="16847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATTGTTGAAGAGAACAACTCCTTTTTGAAGCTCATCAATGGCTACTACAAATACATTAATAACTCAAGTTCTGACCCGACCCGATTTGTTAATTCAACTTTTGACCCGACCCAGTTTGTGATTTCGAGTAAGAAAGAGAAGGAAAGTGGAGAACCCATTTGGGGTAAAAAAA</genome_strand>
        <mrna_strand>AAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATTGTTGAAGAGAACAACTCCTTTTTGAAGCTCATCAATGGCTACTACAAATACATTAATAACTCAAGTTCTGACCCGACCCGATTTGTTAATTCAACTTTTGACCCGACCCAGTTTGTGATTTCGAGTAAGAAAGAGAAGGAAAGTGGAGAACCCATTTGGGGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248580" ref_strand="+" ref_description="SGN-E248580 [cLEF-58-A23]">
      <seq>aaattggggaatgggttttctcttcatattcttccctgaagaagaagaagaagaagaagagaagaaaaaacccactttctctttcactaattcttcttcttcgtcttcgttgttgccttcgttttcattcaaatcgattaatgcaattcgtaatcgttcaacttcatctcatctcatctcaaaagcacaatccacaatttcaatttgtgtattgttgattttcatcactcttttactcttcactctatcaacttttgaacccaacaattcgttaaatcaaaaacgaaaacccccaattcttaatttccaagagaaattgattttcgcacctgcattgcaaggtatgggttcgttgtatcgaagaggaacaagggctatgaatgacttaatcgtagctcatgtaatcgaatccgtaacggagatcgaactgaaaatgttcctcagattactccatagatccggaatcacttctaaatcagacatattgttcctattttcatcgaaatcaagctcgttggatcacgccattgttgaagagaacaactcctttttgaagctcatcaatggctactacaaatacattaataactcaagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="-" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="17844" stop="16646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17544" g_stop="16946" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="-" ref_id="SGN-E248580" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17544" e_stop="16946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATTGTTGAAGAGAACAACTCCTTTTTGAAGCTCATCAATGGCTACTACAAATACATTAATAACTCAAGTTCTG</genome_strand>
        <mrna_strand>AAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATTGTTGAAGAGAACAACTCCTTTTTGAAGCTCATCAATGGCTACTACAAATACATTAATAACTCAAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475028" ref_strand="+" ref_description="SGN-E475028 [cSTB-39-C13]">
      <seq>gagaaatctagagagagaaagtgataatatgggtgtgggattcacaccaaaatccaaagtaaacaacaccaataatagtgaaaactggggaatgggttttctcttcatattcttccctgaagaagaagagaaaaaccccaatttctctttcacaaattcttcttcttcgtcttcgtcttcatcttcttcattgttgccttcattttcattcaaatcgattaatgcaattcgtaatcgttcaagttcatctcatctcatctcaaaagcacaatccacaatttcgatttgcgtattgttgattttcatcactcttttactcttcactctctcaactttcgaacccacaaattcgttaaatcaaaaacgaaaacccccaaatcttaaattccaagagaaattgattttcccacctgcattgcaaggtatgggttcgttgtatcgaagaggaacaagggctatgaatgacctaatcgtagctcatgtaatcgaatccgtaacggagatcgagctgaaaatgttcctcagactactgcacagatccggaatcacttcaaagtcagatatattgttcgtattttcatcgaaatcgagctcatttaatcacgccattattgaagagaacaagtcctttttgaagctcatcaatggctactacaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="-" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="17928" stop="16666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17628" g_stop="16966" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="-" ref_id="SGN-E475028" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17628" e_stop="16966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATCTAGAGAGAGAAAGTGATAATATGGGTATGGGATTTACACCAAAATCTAAAGCAAACAACACCAATAATAGTAGTGAAAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTC-TCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATTGTTGAAGAGAACAACTCCTTTTTGAAGCTCATCAATGGCTACTACAAATA</genome_strand>
        <mrna_strand>GAGAAATCTAGAGAGAGAAAGTGATAATATGGGTGTGGGATTCACACCAAAATCCAAAGTAAACAACACCAAT-A-A-TAGTGAAAACTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAG-AGAAAAACCCCAATTTCTCTTTCACAAATTCTTCTTCTTCGTCTTCGTCTTCATCTTCTTCATTGTTGCCTTCATTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAAGTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCGATTTGCGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTCTCAACTTTCGAACCCACAAATTCGTTAAATCAAAAACGAAAACCCCCAAATCTTAAATTCCAAGAGAAATTGATTTTCCCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACCTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAGCTGAAAATGTTCCTCAGACTACTGCACAGATCCGGAATCACTTCAAAGTCAGATATATTGTTCGTATTTTCATCGAAATCGAGCTCATTTAATCACGCCATTATTGAAGAGAACAAGTCCTTTTTGAAGCTCATCAATGGCTACTACAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205330" ref_strand="+" ref_description="SGN-E205330 [cLEC-25-H19]">
      <seq>agagagagaaagtgataatatgggtatgggatttacaccaaaatgtaaagcaaacaacaccaataatagtagtgaaaattggggaatgggttttctcttcatattcttccctgaagaagaagaagaagaagaagagaagaaaaaacccactttctctttcactaattcttcttcttcgtcttcgttgttgccttcgttttcattcaaatcgattaatgcaattcgtaatcgttcaacttcatctcatctcatctcaaaagcacaatccacaatttcaatttgtgtattgttgattttcatcactcttttactcttcactctatcaacttttgaacccaacaattcgttaaatcaaaaacgaaaacccccaattcttaatttccaagagaaattgattttcgcacctgcattgcaaggtatgggttcgttgtatcgaagaggaacaagggctatgaatgacttaatcgtagctcatgtaatcgaatccgtaacggagatcgaactgaaaatgttcctcagattactccatagatccggaatcacttctaaatcagacatattgttcctattttcatcgaaatcaagctcgttggatcacgccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="-" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="17919" stop="16716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17619" g_stop="17016" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="-" ref_id="SGN-E205330" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17619" e_stop="17016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAAAGTGATAATATGGGTATGGGATTTACACCAAAATCTAAAGCAAACAACACCAATAATAGTAGTGAAAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATT</genome_strand>
        <mrna_strand>AGAGAGAGAAAGTGATAATATGGGTATGGGATTTACACCAAAATGTAAAGCAAACAACACCAATAATAGTAGTGAAAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269573" ref_strand="+" ref_description="SGN-E269573 [cLEM-2-I8]">
      <seq>ttttctcttcatattcttccctgaagaagaagaagaagaagaagagaagaaaaaacccactttctctttcactaattcttcttcttcgtcttcgttgttgccttcgttttcattcaaatcgattaatgcaattcgtaatcgttcaacttcatctcatctcatctcaaaagcacaatccacaatttcaatttgtgtattgttgattttcatcactcttttactcttcactctatcaacttttgaacccaacaattcgttaaatcaaaaacgaaaacccccaattcttaatttccaagagaaattgattttcgcacctgcattgcaaggtatgggttcgttgtatcgaagaggaacaagggctatgaatgacttaatcgtagctcatgtaatcgaatccgtaacggagatcgaactgaaaatgttcctcagattactccatagatccggaatcacttctaaatcagacatattgttcctattttcatcgaaatcaagctcgttggatcacgccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="-" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="17829" stop="16716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17529" g_stop="17016" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="-" ref_id="SGN-E269573" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17529" e_stop="17016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATT</genome_strand>
        <mrna_strand>TTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330646" ref_strand="+" ref_description="SGN-E330646 [cTOD-8-L16]">
      <seq>gataatatgggtatgggatttacaccaaaatctaaagcaaacaacaccaataatagtagtgaaaattggggaatgggttttctcttcatattcttccctgaagaagaagaagaagaagaagagaagaaaaaacccactttctctttcactaattcttcttcttcgtcttcgttgttgccttcgttttcattcaaatcgattaatgcaattcgtaatcgttcaacttcatctcatctcatctcaaaagcacaatccacaatttcaatttgtgtattgttgattttcatcactcttttactcttcactctatcaacttttgaacccaacaattcgttaaatcaaaaacgaaaacccccaattcttaatttccaagagaaattgattttcgcacctgcattgcaaggtatgggttcgttgtatcgaagaggaacaagggctatgaatgacttaatcgtagctcatgtaatcgaatccgtaacggagatcgaactgaaaatgttcctcagattactccatagatccggaatcacttctaaatcagacatattgttcctattttcatcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="-" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="17906" stop="16741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17606" g_stop="17041" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="-" ref_id="SGN-E330646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17606" e_stop="17041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATATGGGTATGGGATTTACACCAAAATCTAAAGCAAACAACACCAATAATAGTAGTGAAAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAA</genome_strand>
        <mrna_strand>GATAATATGGGTATGGGATTTACACCAAAATCTAAAGCAAACAACACCAATAATAGTAGTGAAAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214288" ref_strand="+" ref_description="SGN-E214288 [cLEC-77-D20]">
      <seq>aaaattggggaatgggttttctcttcatattcttccctgaagaagaagaagaagaagaagagaagaaaaaacccactttctctttcactaattcttcttcttcgtcttcgttgttgccttcgttttcattcaaatcgattaatgcaattcgtaatcgttcaacttcatctcatctcatctcaaaagcacaatccacaatttcaatttgtgtattgttgattttcatcactcttttactcttcactctatcaacttttgaacccaacaattcgttaaatcaaaaacgaaaacccccaattcttaatttccaagagaaattgattttcgcacctgcattgcaaggtatgggttcgttgtatcgaagaggaacaagggctatgaatgacttaatcgtagctcatgtaatcgaatccgtaacggagatcgaactgaaaatgttcctcagattactccatagatccggaatcacttctaaatcagacatattgttcctattttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="-" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="17845" stop="16745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17545" g_stop="17045" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="-" ref_id="SGN-E214288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17545" e_stop="17045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCAT</genome_strand>
        <mrna_strand>AAAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271538" ref_strand="+" ref_description="SGN-E271538 [cLEM-23-E20]">
      <seq>gaggagagagagaaaaatctagagagagaaagtgataatatgggtatgggatttacaccaaaatctaaagcaaacaacaccaataatagtagtgaaaattggggaatgggttttctcttcatattcttccctgaagaagaagaagaagaagaagagaagaaaaaacccactttctctttcactaattcttcttcttcgtcttcgttgttgccttcgttttcattcaaatcgattaatgcaattcgtaatcgttcaacttcatctcatctcatctcaaaagcacaatccacaatttcaatttgtgtattgttgattttcatcactcttttactcttcactctatcaacttttgaacccaacaattcgttaaatcaaaaacgaaaacccccaattcttaatttccaagagaaattgattttcgcacctgcattgcaaggtatgggttcgttgtatcgaagaggaacaagggctatgaatgacttaatcgtagctcatgtaatcgaatccgtaacggagatcgaactgaaaatgttcctcagattactccatagatccggaatcacttctaaatcagacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="-" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="17935" stop="16761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17639" g_stop="17061" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="-" ref_id="SGN-E271538" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17639" e_stop="17061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAGAGAGAGAAAAATCTAGAGAGAGAAAGTGATAATATGGGTATGGGATTTACACCAAAATCTAAAGCAAACAACACCAATAATAGTAGTGAAAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATA</genome_strand>
        <mrna_strand>GAGGAGAGAGAGAAAAATCTAGAGAGAGAAAGTGATAATATGGGTATGGGATTTACACCAAAATCTAAAGCAAACAACACCAATAATAGTAGTGAAAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330949" ref_strand="+" ref_description="SGN-E330949 [cTOD-10-F13]">
      <seq>gaaaattggggaatgggttttctcttcatattcttcccttgagaagaagaagaagaagaagagaagaaaaaacccactttctctttcactaattcttcttcttcgtcttcggtgttgccttcgttttcattcaaatcgattaatgcaattcgtaatcgttcaacttcatctcatctcatctcaaaagcacaatccacaatttcaatttgtgtattgttgattttcatcactcttttactcttcactctatcaacttttgaacccaacaattcgttaaatcaaaaacgaaaacccccaattcttaatttccaagagaaattgattttcgcacctgcattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="-" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="17846" stop="16907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17546" g_stop="17207" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="-" ref_id="SGN-E330949" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17546" e_stop="17207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGC</genome_strand>
        <mrna_strand>GAAAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTTGAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGGTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287918" ref_strand="+" ref_description="SGN-E287918 [cLES-19-P1]">
      <seq>aagaattgggggtttgcgtttttgatttaacgaatggttgggttgaaaagttgatagagtgaagagtaaaagagtgatgaaaatcaacaatacacaaattgaaattgtggattgtgcttttgagatgagatgagatgaagttgaacgattacgaattgcattaatcgatttgaatgaaaacgaaggcaacaacgaagacgaagaataagaatttgtgaaagagaaagtgggttttttcttctcttcttgttcttgttcttcttcagggaagaatatgaagagaaaacccattccccaattttgactactattattggtgttgtttgctttagattttggtgtaaatcccatacccatattatcactttctctctctagatttttgtctctctagaagtagctatcaatctttgcacctccatgtataaatatggaagttatgtgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-B1ahv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="16944" stop="17991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17244" g_stop="17691" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-E287918" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17244" e_stop="17691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTGGGGGTTTTCGTTTTTGATTTAACGAATTGTTGGGTTCAAAAGTTGATAGAGTGAAGAGTAAAAGAGTGATGAAAATCAACAATACACAAATTGAAATTGTGGATTGTGCTTTTGAGATGAGATGAGATGAAGTTGAACGATTACGAATTGCATTAATCGATTTGAATGAAAACGAAGGCAACAACGAAGACGAAGAAGAAGAATTAGTGAAAGAGAAAGTGGGTTTTTTCTTCTCTTCTTCTTCTTCTTCTTCTTCAGGGAAGAATATGAAGAGAAAACCCATTCCCCAATTTTCACTACTATTATTGGTGTTGTTTGCTTTAGATTTTGGTGTAAATCCCATACCCATATTATCACTTTCTCTCTCTAGATTTTTCTCTCTCTAGAAGTAGCTATCAATCTTTGCACCTCCATGTATAAATATGGAAGTTATGTGAGTG</genome_strand>
        <mrna_strand>AAGAATTGGGGGTTTGCGTTTTTGATTTAACGAATGGTTGGGTTGAAAAGTTGATAGAGTGAAGAGTAAAAGAGTGATGAAAATCAACAATACACAAATTGAAATTGTGGATTGTGCTTTTGAGATGAGATGAGATGAAGTTGAACGATTACGAATTGCATTAATCGATTTGAATGAAAACGAAGGCAACAACGAAGACGAAGAATAAGAATTTGTGAAAGAGAAAGTGGGTTTTTTCTTCTCTTCTTGTTCTTGTTCTTCTTCAGGGAAGAATATGAAGAGAAAACCCATTCCCCAATTTTGACTACTATTATTGGTGTTGTTTGCTTTAGATTTTGGTGTAAATCCCATACCCATATTATCACTTTCTCTCTCTAGATTTTTGTCTCTCTAGAAGTAGCTATCAATCTTTGCACCTCCATGTATAAATATGGAAGTTATGTGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>35</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="875" PGL_stop="2916"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="893" e_stop="2012"/>
            <exon e_start="2085" e_stop="2916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="0.948"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="893" e_stop="2012" e_length="1120"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="2013" i_stop="2084" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="2085" e_stop="2916" e_length="832"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="893" stop="1505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="893" stop="1476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="893" stop="1413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="903" stop="1305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="924" stop="1523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="925" stop="1587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="958" stop="1292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1025" stop="1739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1065" stop="1778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1066" stop="1708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1182" stop="1800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1182" stop="1377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1301" stop="2012"/>
              <exon start="2085" stop="2106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1301" stop="1746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1335" stop="2012"/>
              <exon start="2085" stop="2181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1517" stop="2012"/>
              <exon start="2085" stop="2196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1632" stop="2012"/>
              <exon start="2085" stop="2320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419244" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2208" stop="2916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2357" stop="2916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395006" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2381" stop="2916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250407" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2413" stop="2916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAGAAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGATGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAG : GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGACTATTGAAGATCTCATCGTAAGGTTGAGAATCGAAGAGGATAATAAGGTTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAACATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATTAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGATGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  N  H  *  K  F  F  H  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  F  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  Y  *  G  H  T  V  V  S  V  D  S  D  *  F  L  Y  S  I  L  F  S  A  S  S  Y  F  C  F  C  F  C  L  L  T  L  *  I  Q  V  I  V  R  I  T  I  L  R  N  L  D  S  F  C  I  *  G  F  W  R  L  K  P  L  *  F  S  T  L  L  E  F  L  K  F  I  R  L  T  I  K  R  T  *  K  L  Y  R  *  I  R  N  S  L  C  K  D  L  F  F  T  V  S  I  L  N  T  *  F  I  C  H  L  *  Q  R  K  K  K  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  P  S  K  F  S  G  V  D  F  K  R  C  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  P  K  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  I  A  M  Q  K  P  Q  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E   : G  L  I  V  N  D  A  F  Q  V  A  A  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  H  K  R  K  E  M  T  I  E  D  L  I  V  R  L  R  I  E  E  D  N  K  V  A  E  K  R  S  R  G  N  S  A  I  S  G  V  N  F  V  E  E  D  S  T  K  L  K  K  R  K  K  T  S  G  P  K  S  N  P  P  K  K  K  F  N  G  N  C  F  N  C  G  K  H  G  H  R  A  N  E  C  R  G  P  K  K  D  K  K  K  K  D  *  A  N  L  A  E  S  K  G  E  M  D  D  L  C  A  M  L  S  E  C  N  L  V  G  N  P  R  E  *  W  I  D  S  G  A  S  C  H  V  C  A  N  K  E  L  F  S  S  Y  T  P  A  L  T  D  E  K  L  F  M  A  N  S  A  V  A  K  V  E  G  T  G  K  V  L  L  K  M  T  S  G  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  P  V  L  T  K  N  G  F  K  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  Y  L  S  D  D  L  F  K  L  N  V  I  A  V  D  M  N  K  D  F  A  S  S   </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  L  I  T  E  N  F  F  I  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  Y  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  I  K  D  T  Q  *  F  L  W  T  R  I  N  S  C  I  L  Y  Y  F  L  L  H  L  I  S  V  S  V  S  V  Y  *  L  Y  K  Y  K  L  L  *  E  *  Q  S  *  E  I  *  T  V  S  V  F  E  V  S  G  D  *  N  L  Y  D  F  L  L  C  L  N  F  *  N  S  F  D  *  R  L  K  E  H  K  N  F  I  V  K  S  E  T  V  C  V  K  I  C  S  L  L  L  V  F  *  I  L  N  L  S  A  I  C  D  R  E  K  K  R  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  A  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  R  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  C  V  *  Q  C  K  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  S  M  I  S  L  L  K  :  D  *  L  *  M  M  L  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  R  R  *  L  L  K  I  S  S  *  G  *  E  S  K  R  I  I  R  L  Q  K  R  G  H  V  V  I  Q  Q  Y  L  E  *  I  L  L  K  K  I  P  Q  N  *  R  K  E  R  K  H  L  V  Q  K  A  I  L  L  R  R  N  S  M  E  T  A  L  I  V  V  N  M  V  I  G  L  M  N  V  G  V  L  R  R  T  R  K  R  K  I  K  Q  T  W  L  N  P  K  E  K  W  M  I  S  V  Q  C  F  Q  N  V  T  W  L  E  I  Q  E  N  D  G  *  I  L  V  P  H  A  M  F  V  P  T  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  K  N  C  L  W  Q  T  P  L  L  Q  R  W  K  E  L  A  K  S  Y  *  R  *  H  Q  A  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  Q  F  *  P  R  M  D  L  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  E  K  A  T  L  V  M  T  F  S  N  S  M  *  L  Q  L  I  *  I  K  I  L  L  L  L  </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  *  S  L  K  I  F  S  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  I  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  L  L  R  T  H  S  S  F  C  G  L  G  L  I  L  V  F  Y  I  I  F  C  F  I  L  F  L  F  L  F  L  F  I  N  F  I  N  T  S  Y  C  K  N  N  N  L  K  K  F  R  Q  F  L  Y  L  R  F  L  E  I  K  T  F  M  I  F  Y  S  A  *  I  F  K  I  H  S  I  N  D  *  K  N  I  K  T  L  S  L  N  Q  K  Q  F  V  *  R  F  V  L  Y  C  *  Y  F  K  Y  L  I  Y  L  P  F  V  T  E  K  K  K  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  F  K  V  F  W  S  R  L  *  E  M  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  T  K  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  P  *  S  P  C  *  R :   I  D  C  E  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  T  Q  T  Q  G  D  D  Y  *  R  S  H  R  K  V  E  N  R  R  G  *  *  G  C  R  K  E  V  T  W  *  F  S  N  I  W  S  K  F  C  *  R  R  F  H  K  I  K  E  K  K  E  N  I  W  S  K  K  Q  S  S  *  E  E  I  Q  W  K  L  L  *  L  W  *  T  W  S  *  G  *  *  M  S  G  S  *  E  G  Q  E  K  E  R  L  S  K  L  G  *  I  Q  R  R  N  G  *  S  L  C  N  A  F  R  M  *  L  G  W  K  S  K  R  M  M  D  R  F  W  C  L  M  P  C  L  C  Q  Q  R  I  I  F  I  I  Y  S  S  T  Y  R  *  K  I  V  Y  G  K  L  R  C  C  K  G  G  R  N  W  Q  S  P  I  K  D  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  S  S  D  Q  E  W  I  *  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  K  R  L  P  *  *  *  P  F  Q  T  Q  C  N  C  S  *  Y  E  *  R  F  C  F  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1904" stop="2012"/>
                    <exon start="2085" stop="2452"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNSLWQKFLDFKMIDSKTVVTQVQELQVIIHDLLAEGLIVNDAFQVAAIIEKLPPLWKDFKNYLKHKRKEMTIEDLIVRLRIEEDNKVAEKRSRGNSAISGVNFVEEDSTKLKKRKKTSGPKSNPPKKKFNGNCFNCGKHGHRANECRGPKKDKKKKD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2540" stop="2914"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WIDSGASCHVCANKELFSSYTPALTDEKLFMANSAVAKVEGTGKVLLKMTSGKVVTLNRVSYVPELRKNLVSIPVLTKNGFKCVFVSDKVVVSKNDMYVGKGYLSDDLFKLNVIAVDMNKDFASS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1123" stop="1365"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITLGTVRGLNLLRTHSSFCGLGLILVFYIIFCFILFLFLFLFINFINTSYCKNNNLKKFRQFLYLRFLEIKTFMIFYSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="875" e_stop="1070"/>
            <exon e_start="1499" e_stop="2068"/>
            <exon e_start="2811" e_stop="2828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.807" acc_prob="0.995" e_score="0.888"/>
          <exon-intron don_prob="0.900" acc_prob="0.104" e_score="0.911"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.888">
            <gDNA_exon_boundary e_start="875" e_stop="1070" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.807" acc_prob="0.995">
            <gDNA_intron_boundary i_start="1071" i_stop="1498" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="1499" e_stop="2068" e_length="570"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.104">
            <gDNA_intron_boundary i_start="2069" i_stop="2810" i_length="742"/>
          </intron>
          <exon e_serial="3" e_score="0.556">
            <gDNA_exon_boundary e_start="2811" e_stop="2828" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="875" stop="1070"/>
              <exon start="1499" stop="2068"/>
              <exon start="2811" stop="2828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAGATTTCACTGAACAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAG : AGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGATGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCAC : TAGTAAGCAAAAATGATA</gDNA_template>
            <first_frame> K  Q  I  S  L  N  R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  N  H  *  K  F  F  H  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  E  V  *   : E  K  K  K  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  F  K  V  F  W  S  R  L  *  E  M  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  T  K  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  P  *  S  P  C  *  R  Y  K  F  I  *  C  L  C  *  K  Y  *  V  F  P  *  Y  S   : L  V  S  K  N  D  </first_frame>
            <second_frame>  N  R  F  H  *  T  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  L  I  T  E  N  F  F  I  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  :  R  K  K  K  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  P  S  K  F  S  G  V  D  F  K  R  C  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  P  K  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  I  A  M  Q  K  P  Q  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E  G  I  N  L  F  N  A  Y  V  R  N  I  K  F  S  L  N  T  H  :  *  *  A  K  M  I </second_frame>
            <third_frame>   T  D  F  T  E  Q  T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  *  S  L  K  I  F  S  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R :   E  K  K  R  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  A  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  R  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  C  V  *  Q  C  K  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  S  M  I  S  L  L  K  V  *  I  Y  L  M  P  M  L  E  I  L  S  F  P  L  I  L  T :   S  K  Q  K  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1636" stop="1938"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMQQKMFFYLTTLSLQKFTKENVPVMSDETPADERFLVTEAWTHSDFLCKNYILSGLQDDLYNVYSNAKTSKELWDALEKKYKTEDAGMKKFIVAKISGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="996" stop="1070"/>
                    <exon start="1499" stop="1675"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQSVDRLSLCDLLLFLSSLKLKKFERKKKTNSSQTNAGTVSAATTTVAHNRSNAALAPAEKPSKFSGVDFKRCSKRCSSISLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6495" PGL_stop="6722"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6495" e_stop="6722"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="6495" e_stop="6722" e_length="228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6495" stop="6722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCTTTCTCTACATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATT</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  N  H  *  K  F  F  L  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  V  V  L  K  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  L  I  T  E  N  F  F  F  L  Y  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K   </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  *  S  L  K  I  F  S  F  S  T  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0053A08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17639" PGL_stop="16199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17639" e_stop="16199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="17639" e_stop="16199" e_length="1441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17639" stop="17061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17628" stop="16966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17619" stop="17016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17606" stop="17041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17546" stop="17207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17545" stop="17045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17544" stop="16946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17529" stop="17016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17430" stop="16820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17414" stop="16847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17115" stop="16199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702785" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTAGAGAGAGAAAAATCTAGAGAGAGAAAGTGATAATATGGGTATGGGATTTACACCAAAATCTAAAGCAAACAACACCAATAATAGTAGTGAAAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATTGTTGAAGAGAACAACTCCTTTTTGAAGCTCATCAATGGCTACTACAAATACATTAATAACTCAAGTTCTGACCCGACCCGATTTGTTAATTCAACTTTTGACCCGACCCAGTTTGTGATTTCGAGTAAGAAAGAGAAGGAAAGTGGAGAACCCATTTGGGGTAAAAAAATTCGGGTTTATGAGGATTTTGGTAACTCAACCGAGTTAAGTCTAACTCAGTTGAGTTATGGTTCGGTGGTGGGTTTTGATACGGGTGAACTTGACCCGGAGAACTCGTTATCCGGGTTCTTGGATCATGTTCCGATGAGTTTAAGAAGATGGGCTTGTTACCCGATGTTATTGGGTCGGGTACGGAGAAATTACAAACATGTCCTTTTAGTAGACCTAAAGGAATATCTCGTACTTGGTGATTCACTAAGCCAACTCAAGAATCGTAGTCCGGAGTCCGTTATACTGACCACATTACCTGCTCGAAAAAAGAACTCCGAGAAAAAATCCGTTAACTCGGGGTTTGTACTTGGTGGTGCACGTGGAGTGAGACGATTGGCTAATGCAATGTTAACGGAAATCGTTCGAGCTATAACACAACATAAGAAGAGAAACATGGTGTCTGAATCAACATTGTTCAACCAACTTGTTGCGAATGAGTTTATGTTGAAGAATGTGAATTTGATTGTATCGAGTGAGTCAACTCATGAACTAAGTTCACTCACCGGGTTAATGAACTCAAACTCGAAATCGGGTTCGAGCTCATTTTCTATTTCTAAATTTCCTATTGTTAGGCGTGGGAATAGTAATTTGGATATTAGTTATGTTT</gDNA_template>
            <first_frame> F  *  R  E  K  N  L  E  R  E  S  D  N  M  G  M  G  F  T  P  K  S  K  A  N  N  T  N  N  S  S  E  N  W  G  M  G  F  L  F  I  F  F  P  E  E  E  E  E  E  E  E  K  K  K  P  T  F  S  F  T  N  S  S  S  S  S  S  L  L  P  S  F  S  F  K  S  I  N  A  I  R  N  R  S  T  S  S  H  L  I  S  K  A  Q  S  T  I  S  I  C  V  L  L  I  F  I  T  L  L  L  F  T  L  S  T  F  E  P  N  N  S  L  N  Q  K  R  K  P  P  I  L  N  F  Q  E  K  L  I  F  A  P  A  L  Q  G  M  G  S  L  Y  R  R  G  T  R  A  M  N  D  L  I  V  A  H  V  I  E  S  V  T  E  I  E  L  K  M  F  L  R  L  L  H  R  S  G  I  T  S  K  S  D  I  L  F  L  F  S  S  K  S  S  S  L  D  H  A  I  V  E  E  N  N  S  F  L  K  L  I  N  G  Y  Y  K  Y  I  N  N  S  S  S  D  P  T  R  F  V  N  S  T  F  D  P  T  Q  F  V  I  S  S  K  K  E  K  E  S  G  E  P  I  W  G  K  K  I  R  V  Y  E  D  F  G  N  S  T  E  L  S  L  T  Q  L  S  Y  G  S  V  V  G  F  D  T  G  E  L  D  P  E  N  S  L  S  G  F  L  D  H  V  P  M  S  L  R  R  W  A  C  Y  P  M  L  L  G  R  V  R  R  N  Y  K  H  V  L  L  V  D  L  K  E  Y  L  V  L  G  D  S  L  S  Q  L  K  N  R  S  P  E  S  V  I  L  T  T  L  P  A  R  K  K  N  S  E  K  K  S  V  N  S  G  F  V  L  G  G  A  R  G  V  R  R  L  A  N  A  M  L  T  E  I  V  R  A  I  T  Q  H  K  K  R  N  M  V  S  E  S  T  L  F  N  Q  L  V  A  N  E  F  M  L  K  N  V  N  L  I  V  S  S  E  S  T  H  E  L  S  S  L  T  G  L  M  N  S  N  S  K  S  G  S  S  S  F  S  I  S  K  F  P  I  V  R  R  G  N  S  N  L  D  I  S  Y  V  </first_frame>
            <second_frame>  S  R  E  R  K  I  *  R  E  K  V  I  I  W  V  W  D  L  H  Q  N  L  K  Q  T  T  P  I  I  V  V  K  I  G  E  W  V  F  S  S  Y  S  S  L  K  K  K  K  K  K  K  R  R  K  N  P  L  S  L  S  L  I  L  L  L  R  L  R  C  C  L  R  F  H  S  N  R  L  M  Q  F  V  I  V  Q  L  H  L  I  S  S  Q  K  H  N  P  Q  F  Q  F  V  Y  C  *  F  S  S  L  F  Y  S  S  L  Y  Q  L  L  N  P  T  I  R  *  I  K  N  E  N  P  Q  F  L  I  S  K  R  N  *  F  S  H  L  H  C  K  V  W  V  R  C  I  E  E  E  Q  G  L  *  M  T  *  S  *  L  M  *  S  N  P  *  R  R  S  N  *  K  C  S  S  D  Y  S  I  D  P  E  S  L  L  N  Q  T  Y  C  S  Y  F  H  R  N  Q  A  R  W  I  T  P  L  L  K  R  T  T  P  F  *  S  S  S  M  A  T  T  N  T  L  I  T  Q  V  L  T  R  P  D  L  L  I  Q  L  L  T  R  P  S  L  *  F  R  V  R  K  R  R  K  V  E  N  P  F  G  V  K  K  F  G  F  M  R  I  L  V  T  Q  P  S  *  V  *  L  S  *  V  M  V  R  W  W  V  L  I  R  V  N  L  T  R  R  T  R  Y  P  G  S  W  I  M  F  R  *  V  *  E  D  G  L  V  T  R  C  Y  W  V  G  Y  G  E  I  T  N  M  S  F  *  *  T  *  R  N  I  S  Y  L  V  I  H  *  A  N  S  R  I  V  V  R  S  P  L  Y  *  P  H  Y  L  L  E  K  R  T  P  R  K  N  P  L  T  R  G  L  Y  L  V  V  H  V  E  *  D  D  W  L  M  Q  C  *  R  K  S  F  E  L  *  H  N  I  R  R  E  T  W  C  L  N  Q  H  C  S  T  N  L  L  R  M  S  L  C  *  R  M  *  I  *  L  Y  R  V  S  Q  L  M  N  *  V  H  S  P  G  *  *  T  Q  T  R  N  R  V  R  A  H  F  L  F  L  N  F  L  L  L  G  V  G  I  V  I  W  I  L  V  M  F </second_frame>
            <third_frame>   L  E  R  E  K  S  R  E  R  K  *  *  Y  G  Y  G  I  Y  T  K  I  *  S  K  Q  H  Q  *  *  *  *  K  L  G  N  G  F  S  L  H  I  L  P  *  R  R  R  R  R  R  R  E  E  K  T  H  F  L  F  H  *  F  F  F  F  V  F  V  V  A  F  V  F  I  Q  I  D  *  C  N  S  *  S  F  N  F  I  S  S  H  L  K  S  T  I  H  N  F  N  L  C  I  V  D  F  H  H  S  F  T  L  H  S  I  N  F  *  T  Q  Q  F  V  K  S  K  T  K  T  P  N  S  *  F  P  R  E  I  D  F  R  T  C  I  A  R  Y  G  F  V  V  S  K  R  N  K  G  Y  E  *  L  N  R  S  S  C  N  R  I  R  N  G  D  R  T  E  N  V  P  Q  I  T  P  *  I  R  N  H  F  *  I  R  H  I  V  P  I  F  I  E  I  K  L  V  G  S  R  H  C  *  R  E  Q  L  L  F  E  A  H  Q  W  L  L  Q  I  H  *  *  L  K  F  *  P  D  P  I  C  *  F  N  F  *  P  D  P  V  C  D  F  E  *  E  R  E  G  K  W  R  T  H  L  G  *  K  N  S  G  L  *  G  F  W  *  L  N  R  V  K  S  N  S  V  E  L  W  F  G  G  G  F  *  Y  G  *  T  *  P  G  E  L  V  I  R  V  L  G  S  C  S  D  E  F  K  K  M  G  L  L  P  D  V  I  G  S  G  T  E  K  L  Q  T  C  P  F  S  R  P  K  G  I  S  R  T  W  *  F  T  K  P  T  Q  E  S  *  S  G  V  R  Y  T  D  H  I  T  C  S  K  K  E  L  R  E  K  I  R  *  L  G  V  C  T  W  W  C  T  W  S  E  T  I  G  *  C  N  V  N  G  N  R  S  S  Y  N  T  T  *  E  E  K  H  G  V  *  I  N  I  V  Q  P  T  C  C  E  *  V  Y  V  E  E  C  E  F  D  C  I  E  *  V  N  S  *  T  K  F  T  H  R  V  N  E  L  K  L  E  I  G  F  E  L  I  F  Y  F  *  I  S  Y  C  *  A  W  E  *  *  F  G  Y  *  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053A08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17633" stop="16200"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1434</number_coding_nucleotides>
                  <number_encoded_amino_acids>478</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REKNLERESDNMGMGFTPKSKANNTNNSSENWGMGFLFIFFPEEEEEEEEKKKPTFSFTNSSSSSSLLPSFSFKSINAIRNRSTSSHLISKAQSTISICVLLIFITLLLFTLSTFEPNNSLNQKRKPPILNFQEKLIFAPALQGMGSLYRRGTRAMNDLIVAHVIESVTEIELKMFLRLLHRSGITSKSDILFLFSSKSSSLDHAIVEENNSFLKLINGYYKYINNSSSDPTRFVNSTFDPTQFVISSKKEKESGEPIWGKKIRVYEDFGNSTELSLTQLSYGSVVGFDTGELDPENSLSGFLDHVPMSLRRWACYPMLLGRVRRNYKHVLLVDLKEYLVLGDSLSQLKNRSPESVILTTLPARKKNSEKKSVNSGFVLGGARGVRRLANAMLTEIVRAITQHKKRNMVSESTLFNQLVANEFMLKNVNLIVSSESTHELSSLTGLMNSNSKSGSSSFSISKFPIVRRGNSNLDISYV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="17244" PGL_stop="17691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17244" e_stop="17691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="17244" e_stop="17691" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17244" stop="17691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287918" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAATTGGGGGTTTTCGTTTTTGATTTAACGAATTGTTGGGTTCAAAAGTTGATAGAGTGAAGAGTAAAAGAGTGATGAAAATCAACAATACACAAATTGAAATTGTGGATTGTGCTTTTGAGATGAGATGAGATGAAGTTGAACGATTACGAATTGCATTAATCGATTTGAATGAAAACGAAGGCAACAACGAAGACGAAGAAGAAGAATTAGTGAAAGAGAAAGTGGGTTTTTTCTTCTCTTCTTCTTCTTCTTCTTCTTCAGGGAAGAATATGAAGAGAAAACCCATTCCCCAATTTTCACTACTATTATTGGTGTTGTTTGCTTTAGATTTTGGTGTAAATCCCATACCCATATTATCACTTTCTCTCTCTAGATTTTTCTCTCTCTAGAAGTAGCTATCAATCTTTGCACCTCCATGTATAAATATGGAAGTTATGTGAGTG</gDNA_template>
            <first_frame> K  N  W  G  F  S  F  L  I  *  R  I  V  G  F  K  S  *  *  S  E  E  *  K  S  D  E  N  Q  Q  Y  T  N  *  N  C  G  L  C  F  *  D  E  M  R  *  S  *  T  I  T  N  C  I  N  R  F  E  *  K  R  R  Q  Q  R  R  R  R  R  R  I  S  E  R  E  S  G  F  F  L  L  F  F  F  F  F  F  F  R  E  E  Y  E  E  K  T  H  S  P  I  F  T  T  I  I  G  V  V  C  F  R  F  W  C  K  S  H  T  H  I  I  T  F  S  L  *  I  F  L  S  L  E  V  A  I  N  L  C  T  S  M  Y  K  Y  G  S  Y  V  S  </first_frame>
            <second_frame>  R  I  G  G  F  R  F  *  F  N  E  L  L  G  S  K  V  D  R  V  K  S  K  R  V  M  K  I  N  N  T  Q  I  E  I  V  D  C  A  F  E  M  R  *  D  E  V  E  R  L  R  I  A  L  I  D  L  N  E  N  E  G  N  N  E  D  E  E  E  E  L  V  K  E  K  V  G  F  F  F  S  S  S  S  S  S  S  S  G  K  N  M  K  R  K  P  I  P  Q  F  S  L  L  L  L  V  L  F  A  L  D  F  G  V  N  P  I  P  I  L  S  L  S  L  S  R  F  F  S  L  *  K  *  L  S  I  F  A  P  P  C  I  N  M  E  V  M  *  V </second_frame>
            <third_frame>   E  L  G  V  F  V  F  D  L  T  N  C  W  V  Q  K  L  I  E  *  R  V  K  E  *  *  K  S  T  I  H  K  L  K  L  W  I  V  L  L  R  *  D  E  M  K  L  N  D  Y  E  L  H  *  S  I  *  M  K  T  K  A  T  T  K  T  K  K  K  N  *  *  K  R  K  W  V  F  S  S  L  L  L  L  L  L  L  Q  G  R  I  *  R  E  N  P  F  P  N  F  H  Y  Y  Y  W  C  C  L  L  *  I  L  V  *  I  P  Y  P  Y  Y  H  F  L  S  L  D  F  S  L  S  R  S  S  Y  Q  S  L  H  L  H  V  *  I  W  K  L  C  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053A08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17377" stop="17637"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEVERLRIALIDLNENEGNNEDEEEELVKEKVGFFFSSSSSSSSGKNMKRKPIPQFSLLLLVLFALDFGVNPIPILSLSLSRFFSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053A08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17421" stop="17621"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRRQQRRRRRRISERESGFFLLFFFFFFFREEYEEKTHSPIFTTIIGVVCFRFWCKSHTHIITFSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 136 chains have been computed
$ 
$ memory statistics:
$ 133784 bytes spliced alignments in total
$ 35 spliced alignments have been stored
$ 3822 bytes was the average size of a spliced alignment
$ 9432 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2358 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 149 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-04 08:35:50
-->
