<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-05 02:29:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0066O12-DC3a4/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0066O12-DC3a4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-DC3a4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341727" ref_strand="+" ref_description="SGN-U341727        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | dynamin family protein, similar to RBTMx2 (Oncorhynchus mykiss) GI:1399452; contains Pfam profiles PF01031: Dynamin central region, PF00350: Dynamin family, PF02212: Dynamin GTPase effector domain | chr1:22295247-22297629 FORWARD | Aliases: F8A5.5, F8A5_5(evalue: 2e-107, score=327) genbank/nr: dynamin(evalue: 3e-111, score=339)">
      <seq>taagaaccattttttcctacttactagagtatcaagaaagtatggcttaccaaaacatcaatggttgcatttctgattcaattgaaattcttgatccaaaacctcttgcagtagtagcttctggtgttgttcatcctcctattgttgcatctttcaatgatagaattcgtccacttctcgactgtatagacaagctccgccatctcaacatcatgcaagaaggtatccagctcccaacgatcgtagtagtcggagatcaatcttctggaaagtccagtgttcttgaatcccttgctgggatcagtcttcctagaggacaaggcatttgcaccagggtccctcttgttatgaggctgcagaatgatccaaacatcacagcaccaagtcttcagttggagtacaataacaagtcactccctgttgatgaaattggcattgcagatgctatcattcttgctactgatgagattgctggacatggtaaaggtatatctaactaccctttaacactagtagttaagaaaaatggtgtccctgatttgaccatggtggatttacctggtattactagagttgctgtacaaggtcaacctgaagacatttatgagcaaatttacgatattattatgaaatatattgtccctgaggaaagcataatcttgaatgttttgtcagctactgttgatttccctacttgcgagtctattagaatgtctcagaaagtggacaagacaggggaaaggactctggctgttgtgacaaaagctgataaagcccctgaagggctgcttgaaaggttaccgcggatgaagtgaatatagggcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-DC3a4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="+" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="4506" stop="5933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4806" g_stop="5633" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="827" r_length="827" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="+" ref_id="SGN-U341727" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4806" e_stop="5633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAACCATTTTTTCCTACTTACTAGAGTATCAAGAAAGTATGGCTTACCAAAACATCAATGGTTGCATTTCTGATTCAATTGAAATTCTTGATCCAAAACCTCTTGCAGTAGTAGCTTCTGGTGTTGTTCATCCTCCTATTGTTGCATCTTTCAATGATAGAATTCGTCCACTTCTCGACTGTATAGACAAGCTCCGCCATCTCAACATCATGCAAGAAGGTATCCAGCTCCCAACGATCGTAGTAGTCGGAGATCAATCTTCTGGAAAGTCCAGTGTTCTTGAATCCCTTGCTGGGATCAGTCTTCCTAGAGGACAAGGCATTTGCACCAGGGTCCCTCTTGTTATGAGGCTGCAGAATGATCCAAACATCACAGCACCAAGTCTTCAGTTGGAGTACAATAACAAGTCACTCCCTGTTGATGAAATTGGCATTGCAGATGCTATCATTCTTGCTACTGATGAGATTGCTGGACATGGTAAAGGTATATCTAACTACCCTTTAACACTAGTAGTTAAGAAAAATGGTGTCCCTGATTTGACCATGGTGGATTTACCTGGTATTACTAGAGTTGCTGTACAAGGTCAACCTGAAGACATTTATGAGCAAATTTACGATATTATTATGAAATATATTGTCCCTGAGGAAAGCATAATCTTGAATGTTTTGTCAGCTACTGTTGATTTCCCTACTTGCGAGTCTATTAGAATGTCTCAGAAAGTGGACAAGACAGGGGAAAGGACTCTGGCTGTTGTGACAAAAGCTGATAAAGCCCCTGAAGGGCTGCTTGAAAAGGTTACCGCGGATGAAGTGAATATAGGGCTTG</genome_strand>
        <mrna_strand>TAAGAACCATTTTTTCCTACTTACTAGAGTATCAAGAAAGTATGGCTTACCAAAACATCAATGGTTGCATTTCTGATTCAATTGAAATTCTTGATCCAAAACCTCTTGCAGTAGTAGCTTCTGGTGTTGTTCATCCTCCTATTGTTGCATCTTTCAATGATAGAATTCGTCCACTTCTCGACTGTATAGACAAGCTCCGCCATCTCAACATCATGCAAGAAGGTATCCAGCTCCCAACGATCGTAGTAGTCGGAGATCAATCTTCTGGAAAGTCCAGTGTTCTTGAATCCCTTGCTGGGATCAGTCTTCCTAGAGGACAAGGCATTTGCACCAGGGTCCCTCTTGTTATGAGGCTGCAGAATGATCCAAACATCACAGCACCAAGTCTTCAGTTGGAGTACAATAACAAGTCACTCCCTGTTGATGAAATTGGCATTGCAGATGCTATCATTCTTGCTACTGATGAGATTGCTGGACATGGTAAAGGTATATCTAACTACCCTTTAACACTAGTAGTTAAGAAAAATGGTGTCCCTGATTTGACCATGGTGGATTTACCTGGTATTACTAGAGTTGCTGTACAAGGTCAACCTGAAGACATTTATGAGCAAATTTACGATATTATTATGAAATATATTGTCCCTGAGGAAAGCATAATCTTGAATGTTTTGTCAGCTACTGTTGATTTCCCTACTTGCGAGTCTATTAGAATGTCTCAGAAAGTGGACAAGACAGGGGAAAGGACTCTGGCTGTTGTGACAAAAGCTGATAAAGCCCCTGAAGGGCTGCTTG-AAAGGTTACCGCGGATGAAGTGAATATAGGGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-DC3a4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345809" ref_strand="+" ref_description="SGN-U345809        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | dynamin family protein, similar to RBTMx2 (Oncorhynchus mykiss) GI:1399452; contains Pfam profiles PF01031: Dynamin central region, PF00350: Dynamin family, PF02212: Dynamin GTPase effector domain | chr1:22295247-22297629 FORWARD | Aliases: F8A5.5, F8A5_5(evalue: 1e-25, score=114) genbank/nr: Dynamin(evalue: 4e-27, score=119)">
      <seq>tcctgactatttaactacttatagtaagttcatggctcaacaaaacacgttcatggagattatgaatgatcatgggaagtactccatgataaaccttgaaggggtaggagtaatcgacgttggtcatttgaggaagcatctagatgtggtgcaacaggctttcgatttgaagatgagaatgatggcctactggaaaattgtgctaatgaggctggtggattctatggccttacacataatgttcagcatacgaaacatgattaacaaggagatggaaaacgagatcatacaggatctgatggcaccacatggtggtggaattgaaagaatgcttgacgagtcacctttggttgctgagaaacgcaataagctcaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-DC3a4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="+" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="6109" stop="7088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6409" g_stop="6788" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="+" ref_id="SGN-U345809" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6409" e_stop="6788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGACTATTTAACTACTTATAGTAAGTTCATGGCTCAACAAAACACGTTCATGGAGATTATGAATGATCATGGGAAGTACTCCATGATAAACCTTGAAGGGGTAGGAGTAATCGACGTTGGTCATTTGAGGAAGCATCTAGATGTGGTGCAACAGGCTTTCGATTTGAAGATGAGAATGATGGCCTACTGGAAAATTGTGCTAATGAGGCTGGTGGATTCTATGGCCTTACACATAATGTTCAGCATACGAAACATGATTAACAAGGAGATGGAAAACGAGATCATACAGGATCTGATGGCACCACATGGTGGTGGAATTGAAAGAATGCTTGACGAGTCACCTTTGGTTGCTGAGAAACGCAATAGGCTCAAAAAGA</genome_strand>
        <mrna_strand>TCCTGACTATTTAACTACTTATAGTAAGTTCATGGCTCAACAAAACACGTTCATGGAGATTATGAATGATCATGGGAAGTACTCCATGATAAACCTTGAAGGGGTAGGAGTAATCGACGTTGGTCATTTGAGGAAGCATCTAGATGTGGTGCAACAGGCTTTCGATTTGAAGATGAGAATGATGGCCTACTGGAAAATTGTGCTAATGAGGCTGGTGGATTCTATGGCCTTACACATAATGTTCAGCATACGAAACATGATTAACAAGGAGATGGAAAACGAGATCATACAGGATCTGATGGCACCACATGGTGGTGGAATTGAAAGAATGCTTGACGAGTCACCTTTGGTTGCTGAGAAACGCAATAAGCTCAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-DC3a4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326834" ref_strand="+" ref_description="SGN-U326834        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:8050853-8052893 FORWARD | Aliases: T22J18.8, T22J18_8(evalue: 7e-59, score=224) genbank/nr: gi|55297037|dbj|BAD68607.1| unknown protein [Oryza sativa (japonica cultivar-group)] (evalue: 9e-64, score=246)">
      <seq>agcaatggccttctcacattttctccccttttcagtacgctacctttctctcttctgcaacactcgaagacgaagaccgaatactcaaaaatggcagcaactttagcaattgcattgaagagtctcttctctgtgttgggatgtttgattacagccaccgtaatatacaccgtcgccactgatggccttcctttccgcatagaactccttaccccgtggatggcagctaccctgatagatttctacatccacatatttgttatatggtcttgggttgtctacaaggaatcaaactggattactgcaatactttgggtggtcttgctagtatgtttgggaagcattgctacatgtggctacatcgtgttgcaatttcttaagctttcaactcaggaatctttacaggatccaatttactttgtcctattacgacgtcaggaaaagactgaaacagaacaacagaagaaatgttctcttttaactgcaagaattctatttcctgctttgggctgtctgatgctagggacattgatttacaccattgtaactgatggttctccatttcgcagagatgtttttactccgtgggtgatagcaacagtgattgatttctatgttggtgttgtggctctctcggtttgggttgcttataaggaatcaagttggctgagtgcagctttatggataatacttataatttgttctggcagcatcagcacatgtgcctatatagctcttcagcttttcaatctttcatctcaagatcccgtctaccttgttcttttcagcagccgcaacagaaaaagggtatgaagtaacgtctcgaacagagagcatcggagagggtcaattgaggaagaagctttgtggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-DC3a4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="17436" stop="9512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17136" g_stop="16922" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16921" i_stop="15586" i_length="1336">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15585" g_stop="15534" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="267" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15533" i_stop="15172" i_length="362">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.318" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15171" g_stop="15098" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="341" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15097" i_stop="14137" i_length="961">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14136" g_stop="14035" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="443" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14034" i_stop="12698" i_length="1337">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12697" g_stop="12557" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="584" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12556" i_stop="11506" i_length="1051">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11505" g_stop="11454" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="636" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11453" i_stop="11247" i_length="207">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11246" g_stop="11173" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="710" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="11172" i_stop="10292" i_length="881">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="10291" g_stop="10202" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="800" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="10201" i_stop="9884" i_length="318">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9883" g_stop="9812" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="872" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-U326834" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17136" e_stop="16922"/>
          <exon e_start="15585" e_stop="15534"/>
          <exon e_start="15171" e_stop="15098"/>
          <exon e_start="14136" e_stop="14035"/>
          <exon e_start="12697" e_stop="12557"/>
          <exon e_start="11505" e_stop="11454"/>
          <exon e_start="11246" e_stop="11173"/>
          <exon e_start="10291" e_stop="10202"/>
          <exon e_start="9883" e_stop="9812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATGGCCTTCTCACATTTTCTCCCCTTTTCAGTACGCTTCCTTTCTCTCTTCTGCAACACTCGAAGACGAAGACCGAATACTCAAAAATGGCAGCAACTTTAGCAATTGCATTGAAGAGTCTCTTCTCTGTGTTGGGATGTTTGATTACAGCCACCGTAATATACACCGTCGCCACTGATGGCCTTCCTTTCCGCATAGAACTCCTTACCCCGTATTATCCTTTTCTCTCTCTCTCTCTGTCATACTAATCCTACCTTGAATTTCATTTTTTTTTGGATTATTAATGCTCCTGTTTGGATGAATTGGGGTTTGAATCTTTATCAGTACCAAAATTTGTTGAATTATGGATATAGAAAGTCAAAAGCCCTATCTAAATGCTTAAATTATTCAAAAAAGGATCACTTTTAGTTACATTTTTATATTTTGAACGCCTAAACCTGGATTTCTTTCTCCTCACCTTTACTAAGACTGTTTGGATGATTTTAAGCATTGTTTCGTGTTATACTGTATCTTTTTAATGAATATAATGTTTGGATAGATTGTATTGTTCTAATGTCACACTTCAGGAATTTGAGTTATAAACTTACAAGAAAAGTGTGCTAATATGAAAAATGTAGAATAAGATTATTAAATAACATATAAAGACAAAAAGAGAAGAAAATATTAAAGGGATGACACGATCACACCAAATTAGTGGTTACATAAAATGAGATTTTTAATTGTTACAATATCATACAATAGAATTTAAGTAACGATCAAAATGAACATTGTATTTAAATTAACAATATAATACGATGGGTAACAACCATCCAAACAAGGTGTAAAAGTTCAAGCTGCTAGAAATAAGACACTCTCTGGATTTCAATTTATTTGTCATACTTTCTCTTTTCGTTCGTTTATACAGGAATGCTCCTTTTCCTTTTTAGCAATTCTTTAATTCTAACTTTGCACGAGACTTCTTTAAGACCGCAAGATTAAAATGTATTTTGATTTATTTGACAAATCTTTAGTTCAGAAGTTCCTTTTCCTTCCTTCAACTTGGTACCAAGTTAAAACAGGACAAGCAAATTGAAACCGAGGGAGTGACTTTTTTTAATTAATTATGTGTTTAGTTATCTTATAGTAGTCCCTCATTCTCATTTTATTGTGAAGTTGTTACTGTTTGGAGAGTCCAACACTTTTTTTATTTCAACTTTCTCAAACTTCGTTTGAATATTTTGAATCATTAGCTATGTTGATTTGCACTGCTTTTCATGTAGTTTACGAATAGAACAGTTCTATTTTTAAAAAAATGAAGAATCTATACCCAAATTCATACTCAAAATAAGATTTCTGACCCTTGTACTCCGACAGAGGAGTAATATTTCTTTTGAAAACGGTTAAGAAAAAGGAACTAACTTGAAATTGAGATTTTGATTTGAAAAACAGTTTAGTCCCATCTGTATTCTTGATGTTGTTATTAATACCACTTACCTTGTCAAAAAAATAAATAGTTCAGTTCCATCTGCTTTCCAGACAATCTGAAATGAGTGGGATGAATCTTGCAGGTGGATGGCAGCTACCCTGATAGATTTCTACATCCACATATTTGTTATATGGGTATGCCATGATTAATTTAATGCTTCAAAATGTTTCATATGTGAACCTTTATTCTAAAGTCAATTGCATTTTATTTTTCTACAGTTTCACTAGCATTAAATAATGAGGAGAACATGTTTAATTTGGCGCACCTACTATGTTAGATGTCAGAGATATAAATGGTATAGGAGTTAGAGCTATAAATGTTATAAAGGTTAAGATTCTCAGACATTTGTGCAAGGGTTTTAACTGCATTGTAAACAATATTTTTATTCCAAGACATTGGCCAGAATGCATCACATGTTACTATGTTTCTCTGCTCTTAACATCTAAGAGCAGAACCGCAAAAGCAATGCTCTCATGTTTTGGTGTGGTGTTTTCAGTCTTGGGTTGTCTACAAGGAATCAAACTGGATTACTGCAATACTTTGGGTGGTCTTGCTAGTATGTTTGGGAAGGTATGCCACCCCTATTCCTGTATATAGAACAACTTTGATGTACTTTTAGTTTCAGATGATGACTGTTCTTTAAGCTTTCTCTTAGCATCTCTTATATGACTAAATTCTCAGGTTGAATAGGTCTCTATCTGTTGACATACACTGTTTTTTGTCTTCACCCATGGGCATTACAGTCTTAGGATTGATGTTCCCAATTATTTATATCTTGTGTTCGCTGCTATGAATTCCCTTCGTATATAGATAACTTCCTTGATGATATACCCAGTCAATCAATCAACTATACATCAAGCAGAACTAGGTCCGCGATTTGAATTCTCTACATATTTCTTGCTATTTGGGCCCACATCATTCCAATACTATCTAGAAGTTTGTCTTGTAAGGCAAAGTTCAAGAAAATCTCTAAATGTCACACTTATGAATCTAATATTTGTGCAAAAGCATAAATTAAGCGTCAATGCACACTAGTTGGTCTTATTGATTTGGATCTTTTCTTCCATGTTACTTTTTCAGATTTGCAATGATTCCTAGATTTTTTAGGTCTTTTCAGACAACCTCCTCCATGTGATTTAGGCCTTTCTCATCCCCTTCAGCACCTTCAATCACCATGTTACGCCAGTTAACTGGTGTATATTTGATGTATTTTAGGTCTATCAAAGATGACTTTCTCTTACTATATCCTCTATGTGTGCAACTGCACCCTTTGTTTCAACATATATTCAATTTTGTATGACTGCACATTTACCTTGATGTCTTTTGGCAACTTGTATTGCATAGGATACAAATTTTCTTGCATTCCAGTGTTGATGACTGTCTTCCTTTTCAGTTTGTATTATCCTTGCATGTCATCAGAAGGCCATGTTGTCATTGCCCCTACAAAGTTCAATCAATATCATGCATAAATTGCCAGTTTGTGATTATATATTCAGGGATGGTGATAACATTCTCTCTACTCCCTTTACAGCATTGCTACATGTGGCTACATCGTGTTGCAATTTCTTAAGCTTTCAACTCAGGAATCTTTACAGGATCCAATTTACTTTGTCCTATTACGACGTCAGGAAAAGTGAGTAGATATTTGCACAAAGTTCTTTTTTCCTTCATAGTTTCTGTTTTTATTTCTCTTTGGAGACCAGAAAAAGAAAAAGAGAGTTCAATTGGAAATGATATTTAGTTCATATATTTTCATGTATGCATGTCCAACTGTTTGAGGATACTCGTGAAACTGAAATATCATGCACAAGTTTGGTGTTTGGTTGGAGAATATATTTGCAAATGTAATATATAACTGTTGTTAACAAGAGCTACTCTTGTTGTTTTTGCTTCAGTTGCGTATCATGCCTGTTGTTTTGTTCAGAGTAGACATGTAGTGAAAATATCTAGAAAAATGTGGTTCTCAGAATAAAAGAAATGAAATTACATCTCTTCACAGGTCAAGACAATGGTGGAAACATAGCTTGTACTGGGTCTGGCATATTTATGTTCATTGTTCATTGTTTTACTCTTTATTGATCATATACTTATAGAGGTAAAGTCAAAGAATGTAAATATCACACTTGGGTTTATCAAACTTTGGCATTTGTCTTGGACAAGAATAGTGTTCAAATGCCTCATCCCCATCTTGGAAAAATGAAGTTTTCAATCATAGGGAGAAAACAGATTAGTCAACGAAATGTTGCATCCTCCATTTGTGCAGGAGGAATTGCCAGTTGAATACTTTAAATATGTGCCTGGTTTATTTGTTAGATACATCTTCCATTTTGTTAGTAGAGTTAGATAAAAGGTAACTGTGACTTTAATGTTATTTGAGTCGTTTAATTATTCACATATTGGGAAAAGAAACTAAAATCAAGTATTCTCAACAATAAAAAATACAAGTATCTTATCAGCAATATACTAAAGAGATGAAAAATTTGTGATTCGTTTTGTTATTTAGTGACGAGTGTTGTCTTTCTCAGTACTTAGTATGTCATATGTAGTTTCCGAAATCAAAGTACTATTATGTATACCACTTCTTAAGAATATTGGCTTCTTTTATATATCAGTCATCCAAGATCTTTTAGTGGAATTACAATGGTGCTTCTAACTGCAAGTTGGATCATTCATTTCATACTGTGTTTTCTAGTTACCCTTGTTGTGGTTGTTTCTTTTGTACAAGCCCTGCTGTGTACTACGTTATCAGGTCATATAGTCATGACATGTATTGATAACCTACTCTTTGCCGAAAATAATTATACAAAGCTGTAACTGATAGAGTGTTCCTTTAAAAAATATAATATGCAAGTGTTCATGGAGTTTGAAGCTTTCCTCATCAATGTTGTATTAGTGGCACCTATATTTTGTTAGTTTTCTTTGTGAAAATGACCTTAACTTATAATGATCTGATGAGATGTTGTGATTTAGGACTGAAACAGAACAACAGAAGAAATGTTCTCTTTTAACTGCAAGAATTCTATTTCCTGCTTTGGGCTGTCTGATGCTAGGGACATTGATTTACACCATTGTAACTGATGGTTCTCCATTTCGCAGAGATGTTTTTACTCCGTAAGTTATTTGTTTGTTTATTTATTCCTATTTAAAACAGATACCATCAACCTTGTTTTTTTCTGGTTAAATGGAGACTTTGCTACCGATTTTGAGGATAGCAGCATTGGCGGAGAACTTTGTCGGTGCTTGAAAGTTTTGTTTGTTTTCTTGTTTGAACTATAATTAGATCTCCGCTCTGCTGCTTTCTAAATTGATGCACTTTATGGGGAAGTAGCATAAACCTCTCGTAACTGGAAGTTTTTGTGCTATTGTGGAGGAAAACTCCCTTTTCATTTATTCAATGTCATATCAGCATTTTATTTATTTAAGGAAGTATATATGTCTTCCTGGAATGAGTTCCTAAATGAGAGAATATCTGCACTACAGTGATTCGAAGGTTGGGATGAGGTTACTGAAAATGACTTGTGCTCTCAGAATGTATAAAATTTCTATTAATAATATTGCCTCTCTCATTTTTCATGAACAAGGACTATTGATGATTTCTTACCTCATGTTAATCGTTTAATCCTTATTTGTTTCTTACCGTGTTAACTTTAAATATTATAACATATGATTAGACTGATCTATGGTGAGCTTTATAACTTTTCCCTATGTAACATGATACTACCTTCAGTGTGACATATGTCGGATAATATGGTATCTATGGTATTTCGAACTCTATTTCTCTGATGCTAAATTTCAATCGGAATTTTTGTATTAATTATCCTCTTCTTTGGTTTGCAAAGTCTAACTAAAATAAGCTCTTTCTTCCTCTAAATGGATTCACTATGTACAGGTCATTCTTAGGGCCTAGATTCATGAAACTTATCAGCATTTCCTCTCTCTACTCTGGTTGATGTCGTGCAACCCTAGAAAATTGTCTTCTTCTTTGTCCAAGGGGCTGCGGTCTATCATTTGCAAATTTGTTTAGAAGTTGTTCTGGAAAACAAACTTCATGAGTTTGTGCAGAAGTAATACATATGCATCCTCTTACATCAGCCGATTATAATTTTCTGCTTGGTATAAGTCTTACTTTGACATGCAATTTAAGAAGTCAATTTATGTGCAGGTGGGTGATAGCAACAGTGATTGATTTCTATGTTGGTGTTGTGGCTCTCTCGGTAAGCTTTTCACTGTTCATCTGCCTTTTTTTAAAATAATTTTTTTTTGGGAAATTCCCCTCTATTTATCTACCTTTGCTTTAGGAAGTCCAAAGTTTGTAAAATTCGATATATGGCTAGAGCCAGTTGCTGCATTAGGTGTCAAAATCATCAGTTAGGACTTTTCATGTGATTATTTATCTTAGATGAGTTGCACTGTTTTTTCAGGTTTGGGTTGCTTATAAGGAATCAAGTTGGCTGAGTGCAGCTTTATGGATAATACTTATAATTTGTTCTGGCAGGTACATGTTTTTTTTGGATAATGCATAAATTGTACTCCTCCATTCCATTTTATACGATGTAGTTTGACTGGACATGGAGTTTTAGAAATATGGAAATATTTTGCAATCTTTCAAAACTACTCTCTAAAAGAAATAATTTTTTAAATAGAAGTCGTGTACACCTATTGGAATTTTTGTCAAATAAACAGGATCCAACATGGGTAAAATGTAGATAGTGTCATTAAATATTTGCCAATTAAGGAAATATGTCAATTCTTTTTGGGCAAACTAGAAAGAAAAATGTGTCATATACATTGGAGCAGAGGGAGTATCAGTTTGAAGTTAGCTTCATCAGTACATCGTCTTATTTGTTGCTCTATGTAGGTGAAAGCAAAATATGAACTCTCATTCATATGTAATGGAATGAGGAGGAGTTCATATATATATGTGTTTGCATGCCTTAATGTGATTCTGAATGAGAAGAGGTTCTGTGAATTTGTCGAAATAACTTAAAAGATCTTGCTTGTTTGGCAAGAAGTCAATTAATATTTCAGCCTTTGCCTATGGCAACAACTTCATTAATAACTAATCTGCATTATTACCTTCTTCCATGCATTAAGCTTTAAGTTTTTAGAGTTCTCCTAAACATGAGTTAATATTCCATCATGAATAACCATAGTTCAATCTAGTTAGTATTTCCTAGACTTTATATTCCTTCAACTATATGTCTGTAAAGGACGACTTCATTATTTTCTATTGTGTTTCTTTTTCTCATGCCGGCAATTTTCTGGTCCCTCAAAAACTGATGGCACTTTTTCCGGCTATATTTATATGATATGTTACAACAATTTGTTTTTGGACCATAATTATATCTAATTCGTGCTTTGTGTTGATTTCCTCAGCATCAGCACATGTGCCTATATAGCTCTTCAGCTTTTCAATCTTTCATCTCAAGATCCCGTCTACCTTGTTCTTTTCAGCAGCCGCAACAGGCAAGTTTGTGCCCCATCTGTTTAAGTGTGTTCTCCTCGTTATGACATAGATTTTGTTTGTTTGTCCTTGTGAACAATCAAATGAAGAAGATATTACTTCCTGTTAGCTCTGCAGCGACAGCAACAATTTGTAGTACGACAAATATACATCCTTGTTCTAGTTTAAAGTTGAACAAGATTTGGAATTTCCTTTCATTTGTGCGAGTGATTGTATCCGTCTTTTGTTCATGGAATTTTACTAATTTCAAGTTTTCATTGCTTCTTAACAATTCTGTACACATTACAATGTTTAATTTTTGTGACTTTTTATTAGGGCAGAAAAAGGGTATGAAGTAACGTCTCGAACAGAGAGCATCGGAGAGGGTCAATTGAGGAAGAAGCTTTGTGGTT</genome_strand>
        <mrna_strand>AGCAATGGCCTTCTCACATTTTCTCCCCTTTTCAGTACGCTACCTTTCTCTCTTCTGCAACACTCGAAGACGAAGACCGAATACTCAAAAATGGCAGCAACTTTAGCAATTGCATTGAAGAGTCTCTTCTCTGTGTTGGGATGTTTGATTACAGCCACCGTAATATACACCGTCGCCACTGATGGCCTTCCTTTCCGCATAGAACTCCTTACCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCAGCTACCCTGATAGATTTCTACATCCACATATTTGTTATATGG..........................................................................................................................................................................................................................................................................................................................................................................TCTTGGGTTGTCTACAAGGAATCAAACTGGATTACTGCAATACTTTGGGTGGTCTTGCTAGTATGTTTGGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCTACATGTGGCTACATCGTGTTGCAATTTCTTAAGCTTTCAACTCAGGAATCTTTACAGGATCCAATTTACTTTGTCCTATTACGACGTCAGGAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGAAACAGAACAACAGAAGAAATGTTCTCTTTTAACTGCAAGAATTCTATTTCCTGCTTTGGGCTGTCTGATGCTAGGGACATTGATTTACACCATTGTAACTGATGGTTCTCCATTTCGCAGAGATGTTTTTACTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGATAGCAACAGTGATTGATTTCTATGTTGGTGTTGTGGCTCTCTCG...............................................................................................................................................................................................................GTTTGGGTTGCTTATAAGGAATCAAGTTGGCTGAGTGCAGCTTTATGGATAATACTTATAATTTGTTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCACATGTGCCTATATAGCTCTTCAGCTTTTCAATCTTTCATCTCAAGATCCCGTCTACCTTGTTCTTTTCAGCAGCCGCAACAG..............................................................................................................................................................................................................................................................................................................................AAAAAGGGTATGAAGTAACGTCTCGAACAGAGAGCATCGGAGAGGGTCAATTGAGGAAGAAGCTTTGTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-DC3a4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343239" ref_strand="+" ref_description="SGN-U343239        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tcttgtttgaactataattagatctccgctctgctgctttctaaattgatgcactttatggggaagtagcataaacctctcgtaactggaagtttttgtgctattgtggaggaaaactcccttttcatttattcaatgtcatatcagcattttatttatttaaggaagtatatatgtcttcctggaatgagttcctaaatgagagaatatctgcactacagtgattcgaaggttgggatgaggttactgaaaatgacttgtgctctcagaatgtataaaatttctattaataatattgcctctctcatttttcatgaacaaggactattgatgatttcttacctcatgttaatcgtttaatccttatttgtttcttaccgtgttaactttaaatattataacatatgattagactgatctatggtgagctttataacttttccctatgtaacatgatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-DC3a4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="12708" stop="11649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12408" g_stop="11949" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-U343239" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12408" e_stop="11949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTTTGAACTATAATTAGATCTCCGCTCTGCTGCTTTCTAAATTGATGCACTTTATGGGGAAGTAGCATAAACCTCTCGTAACTGGAAGTTTTTGTGCTATTGTGGAGGAAAACTCCCTTTTCATTTATTCAATGTCATATCAGCATTTTATTTATTTAAGGAAGTATATATGTCTTCCTGGAATGAGTTCCTAAATGAGAGAATATCTGCACTACAGTGATTCGAAGGTTGGGATGAGGTTACTGAAAATGACTTGTGCTCTCAGAATGTATAAAATTTCTATTAATAATATTGCCTCTCTCATTTTTCATGAACAAGGACTATTGATGATTTCTTACCTCATGTTAATCGTTTAATCCTTATTTGTTTCTTACCGTGTTAACTTTAAATATTATAACATATGATTAGACTGATCTATGGTGAGCTTTATAACTTTTCCCTATGTAACATGATACT</genome_strand>
        <mrna_strand>TCTTGTTTGAACTATAATTAGATCTCCGCTCTGCTGCTTTCTAAATTGATGCACTTTATGGGGAAGTAGCATAAACCTCTCGTAACTGGAAGTTTTTGTGCTATTGTGGAGGAAAACTCCCTTTTCATTTATTCAATGTCATATCAGCATTTTATTTATTTAAGGAAGTATATATGTCTTCCTGGAATGAGTTCCTAAATGAGAGAATATCTGCACTACAGTGATTCGAAGGTTGGGATGAGGTTACTGAAAATGACTTGTGCTCTCAGAATGTATAAAATTTCTATTAATAATATTGCCTCTCTCATTTTTCATGAACAAGGACTATTGATGATTTCTTACCTCATGTTAATCGTTTAATCCTTATTTGTTTCTTACCGTGTTAACTTTAAATATTATAACATATGATTAGACTGATCTATGGTGAGCTTTATAACTTTTCCCTATGTAACATGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-DC3a4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321242" ref_strand="+" ref_description="SGN-U321242        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: AT4G09720.1 | Symbol: None | Ras-related GTP-binding protein, putative, similar to GTP-binding protein RAB7A from (Lotus japonicus) | chr4:6132968-6135180 FORWARD | Aliases: F17A8.70, F17A8_70 (evalue: 3e-99, score=358) genbank/nr: gi|623592|gb|AAA74120.1| putative (evalue: 6e-110, score=400)">
      <seq>aaatatcgaaattggcgccgcttttctctggtttctctttctctctctacaatcccctttcttctctcttctgaaaattgtcaacccagatttgaaattcccaaattccatatacagggttcacttttgatttctctttcgccatgtctattcgtagaagaaccttgcttaaagttatcgtccttggcgatagtggggttggtaaaacgtcattaatgaatcaatatgtacacaagaagttcagtcagcaatataaagctacaattggagctgatttcgtgacaaaggagcttcaaattgatgacaggcttgttacactccaaatatgggatacggccggtcaagagagattccagagtcttggagttgcattttatagaggtgcagattgctgtgttttggtctatgatgttaatgtaatgcgatcctttgataaccttgacaattggcatgaagaatttctcaaacaggctaatccgccagaccctaaaacatttcctttcatattactggggaacaagattgatatagatggtggaaatagccgagtggtttctgagaagaaagcaaaggagtggtgtacttctaaagggataccttactttgagacatcagcaaaagaggatataaatgttgatgctgcattcttgtctattgcaaaaactgccttggccaatgagcacgagcaggatatatacttccaaggcattccagaggcagtttcagagactgaacaaagaggtggctgtgcatgctaaggcggatatagtaattccatcgagtgccatacttgatccatgttgttgtgtattatttctgcaaccgtatcataactctccggccatagccattcttttgtacccactattatatactactatttgatttcttcagtgttgttttgggaagagaagcatcttttgttacatttcagttactggaaggtagagaaactcagaaggatttcacttagtattgcagttggctttgacagagattataactgtgcatctttttttattttctccattgggtggttggttttattgtataatctgaaagagctgtatttttctacatctacgtataaataatgtgttggactcgtaactgctactgtgcttcattgccataaattttcgaaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-DC3a4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="29300" stop="18384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29000" g_stop="28805" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28804" i_stop="28656" i_length="149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28655" g_stop="28629" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="223" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28628" i_stop="28366" i_length="263">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28365" g_stop="28266" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="323" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28265" i_stop="28181" i_length="85">
            <donor d_prob="0.423" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28180" g_stop="28034" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="470" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28033" i_stop="27656" i_length="378">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27655" g_stop="27575" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="551" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27574" i_stop="27425" i_length="150">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27424" g_stop="27282" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="694" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27281" i_stop="19139" i_length="8143">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19138" g_stop="18676" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="1157" r_length="463" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-U321242" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1157</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29000" e_stop="28805"/>
          <exon e_start="28655" e_stop="28629"/>
          <exon e_start="28365" e_stop="28266"/>
          <exon e_start="28180" e_stop="28034"/>
          <exon e_start="27655" e_stop="27575"/>
          <exon e_start="27424" e_stop="27282"/>
          <exon e_start="19138" e_stop="18676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATCGAAATTGGCGCCGCTTTTCTCTGGTTTCTCTTTCTCTCTCTACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGGGTACGATCCCTTTTCCTCTTCTCAATCCTCATTTCCGATTTTTTTATTTTTTATTTTTACAAATTTCTGATCTCCGGCTAGTCATTAGGAAATTAATTGGAGTATATAGTGCTAATATAATTTCTCCTTTTTTTTTTTTTGGTTTACAGGGTTGGTAAAACGTCATTAATGAATCAGTATCCTTTTCTACGACATTGCTAATTGTTTGAGGTCAAGTTTAATTTTTTGTTGAAAATATGAATTGGGTTTTATGAGTATTTCAGTTTCGTGTTGGTAGTTTTCAGAATTTAGTTAACTTATGAGTATCTATTTTGATTTTTTTGTTTTGGGTTCTGTGTATTTGTTATGGATTATTACAGTTTAAGACCGCATTGTTTTTTTTTTAAAAAAATTTATAATTGAAGTAGTTGGAAATGTGGGTCTTTGACGGTTAGCAAAGATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAAGTGGGTTTCTTGGCTATTGATATTGTGAAAAATGTTTTATGGAATTATGCGTTTACGCGAATGTGTTTGTGTTCTGGTTTGGTAGATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAGGTTGGGTGATTATTCTCTGGGATTCGTTTGGTTCAGTAAATTTTTTTATTAAGTTGCTTAGGGTATCCTGATTGCTTAGTGTTTATACATTGCTATGAGTCGTGTTATCAACAAATTAGCAAATGCCTCTGAGACACTTAGTTAAACGCCTTTGAGACTAATTAATTCCTTCATTGTTTTCCTGTTTAAAGGTAAAAGATTTGGGATTACGTTGTGCATTTATAGAGTTTCACGTGTAAATTATGCATTCAAATCTTAATTGGACTACTTCTGTTATAACTTTGGAATGTACATCATTTCCTCATGCAAATATTGACTTATTGGTGTATTAAGATAAGTTGTGATCCATTTTAACCAACATAATTTATTGATATGCAGGCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTGGTAAGGCAATGATAGCGGTAGACTTTTCAAATTATGGTCTCTGGATTGTGTGTAACTCTTGCTCTTGATTGATCCTCTATGGAAGTTTCCTTTTCTTCAGTTCTCTCTCTGCAATAATTGTGACTGATTTGTCTTTTGCATGCTGAACAGGTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCTAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAAATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATATGTGAGTTTTTGTGAATTTTCATGAATATAAACAACTCACTGTTGTTTGTTGCTTTTATTATTATGTGATATGGTGCTTACATACCTTGGAGCTTTGCATTAATAATAATATGAGCTAACTCAAGGGATGGGCTTGAAGGTGTTAAGTGAATTTATTCTAACATGTGACCACCCCTCGAATGTACAAGAATGTTTGCTAGTGGAGTACGATGAAACTAACATTAAGGGGATACTCGGGAGTTCAAAAATTTTTCTGGAACGGTGTGTGACAGAAGTCACTTGTCAGGATAATATTTTTCATGAGAGAGTCATTTTCTGATATTCAGTTGACAGAAACATATAATGGGCGAAAAATGACCTCCCTACGGTGGGAAGTGATCTACACTCAAACTATCTGGACTTTAAACTTCATATCACTTGCTTTAGCTAATACCTAGATACTGTTATTAATCTTAATACTCAAATCTCATCAAAACACTTACAAATTTACTAAGATTATTATTAATCTTTAATATGTTGTTTTCAAAATATACTTTTCACTCATCAATCAAACACTAGAATTTATTTTTCAAGATTAAGATTTTCCTTGGAAAATGACCTGTGTCATTTTAAACACACTTGAAACATTTGATTATTTTGGACAAGAAGATTGTTTGGTTTTGTTTTCTCAAAAAGTTTTTAGAAGAAAAAAGGCAAAACATATTAAATCATAAACCAAACAACAGGCTAAGAACTATTTTAGGTTCAAAATTCAAACAAACCATTGTAACTTTGAAATAACTATTCTTGCACGTTTTGTTTTTCTTTAATTCCATATAACATTTTGGGGGAGGTTCTCTAAAAACCATTCCAAGAAAAACTGCCCAAGGTTCATCTAAGAAACTCTCTTCTTGTTGCATGCATAAGATATCTCTTTAATCATAGAGATTCTCCTTACTTTCATATCTAGTTTATGATAACTATCACATGGAAATTATGCAGGAGAGAGTTATATTGAAGACTAGATAAGTAGACATTAGAATATTTCTTGTAAGGCTAGATTTTGAAGTCTAAAATCCATTAGTGGCAGAAAATGTGATAAGAAGACTGTGAAATCAGTGTTTGACTTACCATAAAGAAAGATAGAGTAGTAGTAATATAGTATTTTAGCATAGTTAGGAGTAGTTTTTGGGATGCTGCACTGCTGTATGTAATATGTAAGTTGTCATGAATAACCTTAGTCCATTAGATAAGCAGTATAGTATTTTATAGTTAACCCTTATCACCTTCTTGGTGCTGGTGTTATAGAAACAAATTACGTATGAAAATATACGCCAATATCAGGTGATTTATTTTCAGAACCATTTTGTGGCCCATCTCAGTTTTTCTTTTTGTGAAGACATTAAATCAGGGATAACATGAAATGAATCTTCACCACAGCATAGCAATGGTCTGCAAGAAAGTCTTTTCCAGTAGACCCAATTGATGATTAGGACTTCAAATCATGGAAAAACAGCATAAGGTGTTTATAGCATAAACATTGCCTTGGGAGGGATAACTAGGCAGGATAATACTTATCAGAGAAGTGTGTTTCTTGGGCTTTTTTTAGCGATATGTTTTGCAGACATTCTGATCTATTGCACTTATAGACGAAGAGCAAGACTGTACCATAGCTCTTGTGAAGGTTCCGACCTATCATGCTAGGGAGATGAATAAATCCTACTTAGGTGGTGAATCTGAAATAGTTCCGGCTCTTTGCGTCTTTGTCTCTGTGACTCCTTTTTATTTTGATTAGGTAAAGGTACTATTATTTAAACCGTACCAAGAGGGTTCCAGGGGAAGTACAAGAGGTCAGAATTTATGATTTCCTTATTGACTCAACGAGCCCAAAAATTGTGACATCTTCTCTAGAATGTAGCTTATACATCAAAAATATAGATTTTGTAGACAGTAAACTATACAAAGGAAATATGTTTATTCTTCCTTCCAAGCCTCTACTTTTTTTTCAGCCACACGGTCTAGTTTTCCAAAATTATGCACATAGGAATAGTCTTCCAAGCCTCTATGTATCTTTTGTCGTCCTTCTGCTCTTGCCAGCATATTAGGGTCTTCCTAACATCCGTGGCCTGCTTTACTCGAAACAGGTTTGTGAACAAAGGCCAAATGTGTCAGGTAAAGCTACAGAACAGAAATATATGGCTGCTGCTATCTAGGGAACTATTGCAAAGAAACACCTGTTACAGAGTGAAAGACGCCTTCTTGAGTAGGGACAAAACTGCCTGCTGTTTACTCATAGATCATTTGGTGCATTTGGCACAAAATTTGGTGAACTTTGATAGAATGAACACTATAGAAAATGAGTTCCTTTAACGGGCTACTGAATGTAAGATGGGTGTGAAAGAAGACATATTCCTAATTATGCATCAAAAGGTGTGGCAAAGTGGTCAATGAAGTGGTAGAACCATATAAGCTTAGCTCAAATCGCAACAGATATGTGCAAGCATTGGTGAATAGAGTTACCTTGTATCCGTGCTGGTGGGATGTAGCAGGTACCCCACGGAATTAGTCAAGGTGCAGGCAAGTTGACCTGGACACCACGGTTATTGATAATAGAAGAAATATTGCTGATTATTCAGCGGAAACAACATGATGGATTCATTCCTATTTGAGTTCTTTACATAAATGATGTAGGATGTAGAAAAACTTAGTTGATGTTATGGTGCAAGGAATATTCAAGTATTACCTGTTTAGAAGGTACTTTCTATTGGTTCTTGTATCTGAGGTAAATGTTGTGATAGCAAGTTGTTGATATGAGAGAAAGGCATCCTCCACTATGCTTGCAGGAACTATTCACATCAAATGGTGACTTTGTGTATAGTACTTAGTAGATCTTTGAAGAAATAACAAGTGTTGCTGTAGTTGAAGAACAAAAAGCAAGTCTCGTTGTTAGAATGTTTGTGGAATATTTACAAGAGCTGAGTTTTTAAGTTAGACAAGCAAAAGATCCATACAGGTACTAGCTAGTTAAAATTAATGTTAAATGTTTGTTGAAGAATTATGAGGATGCCAAAACCTTAAGGCAACAATGGAGTGACCTAGGAAACTCTGAAGCCCTTGGGTACACTTGTACAATCAATGAGGAAAAAGTGTCCTCTTAATACCGCCTTAGATGTGTAACCTGGTTCTACGGTTTACACGCATGGACTGAAAATTCTTGTTTTGTTTCTTTCAATTTGGGTATATTTAGTCTTTAGGATGAGGTTTGCTTACAACCCACCCTCCACAGACCTCACTCGTGGAACTATACTAGGTATGTTGTTATTTTTAGGGAGAGAGAGAGGAGGCTCAACATGAGTAGGTCAAGTAGGGAGAGTAGTGTGAAGATACGACTTTGGGTCTTGTGAAATTAGGTCTTATGCCTAATTCACATCCCAAAAGCTAGCTCAAAGGGAGAAGGATTGTCCAAGCCTTATAAGAATTCCACCCATCTCATTAACCACCGATGTGGGACTTTTGTCATTCTTTAACACCCAACCTCACGCCCAATGCTTAGCATCTGGTGCGTGAATAATTTCGATTTTTGGGACCCAACATCGAGTGAGACGGGCCCTACTCTGATAGGACCGAAATAAGCAGGTGTAAATGCGAAAGCTAGCAAAGCAAACCTCGAATGACTTGAGTAAGAACTAAGAAGACAAATGAGAAATACACCAAAAGAGATAGAAATTTAATGTGGTTCGGTTAATCGACCTATGTCTACAAAAGAACTGAGCAATCCACTATAAATATGAGAGTACAAAATATAGAGAAAAACAACCTTAACCAATTTCCTCAAAATACAAAGAGGGCTCAAAATTCTTCCCATGTAACAACTCTCAAAATCCTATGACTACATTGTGAATGCTAATTGAGTTAGAAAGAACAAACCTATATATTCATAGAGTGCTAAAACCTTTTCCTACCACAAAAAGACTACTCAAAATATTAAAACTTTTTTCTAAAAGGAATACTTATTTATATAAACCCCAATAATCTCCAATTTGGCCTGAATTTCTGACAAAATTATTTTGTCCACCTTCTTCACATGATCTTCAGGATCTTGCATCTTTTCTCCATAATCTCTTCCATCAAATCTATGTCTCGACACAGAGAACCTATTTGAAATAATTTCTCCAACATAGATCTTCATTACTATCAAAAAGGTTATGCGGTTAGTACTACACCTGCCAAGATGAACATCCAATTTTTAATTTGGTTCCATCAACAACCGTTGCACCTGGCTCTGATATAATGTGAAATTAGGTTTTAGGCCTAACTCACACCCCAAAAGCTTGCTCAAAGGGAGGAGGATTATCAAGCCTTATGAGGATCCACCCATCTCATTAACCACCAATGTGTGGGACTTTTGTCATTCTTTAACACCCAACCTTACGACCCTTCAAGGTGGCCAATGGTTTGAGCTTGGGACTTTCATGTTAGAGGTCTTAAGTTCAAAACTCCTTGCTAGCGAAAACAAGGGGTTTGCCTTTTGGGTCGAGCTCGTGCACCAGGTTTGCCTAGTGCGGGTTACCTCTCCTATGTAGTTTGCGAGCTATTGCATCGTAGCGGGGGTTTTACCTGTGCGCACCCAAAGGGTAGCGACTGTGGGTTTACTTGACATTAAAAAAAAACCCATCTTACGCCAATGCTTAGCATTTGATGCGTGGACAATTTTTGATTTTGTGGGCGTCAACATCGGGAGAGATGAGCCTTACTCTAATACCATGTGAAATCAGGTCTTAGGCCTAAATCACACCTCTAGAGCTATAACTTTTGAGGTGTGAGTTAGGACCAAGACCTAATTTCACAGGTCTAATTCGGCCTAAAGACTGGTTGAAGTGAGGATTGACCAAGTCCATATATGGAGACCACTAGCCCATTTTCCAAATAATGTGAAACTTCAAACCACTCTTGTATACCCCTGCACTCCCAAACCGCCAATTGGAGAATGTTGAAAATAATATTGGGGGCTCTAGTATAGATGGGCTTGGCTCTAGTACCATGTGGAGATATGACCCTCTGGCCTAACTCAACCTTTGAATATAGCTCTTTAGAGGAGAATTAGCCGAGTCTATATAAGAAGACCACTAGCCCATTCCCAACCAATGTTGGACTCTCACTTAGTCTAACAGGTTCAACAAGCTAACATTGGGTTGGAGCAATGTTAGTGATTCTATGGGCTGAATTTGTGAAAGAGAAGCATAGAGCAACTTCGTGGGCTGGGTTGAGAGAAAAAAAGCTTAAAGTGGCTCAATGGGACGAGTAAAGAGAAGCTCAGAGCATTACAGTAAGTAGAGAGAAGATAATTGTGCAAAAGGACTGACCAATGTATGGGTTCCATGGGAAAGGATCTGAGCTTCCAAACCAAAAGCTTAGTCGCTGAATTAAATACTTAGGCTGTCAGTAAAGCCCCTGCTTTTGTCACTTAAAGCAATGAGACGATGCGAAGCAACTGTTTATTGTTTCACAAGTAAAACAATGCACTTCAGAGAAGTGTGTGCTTAAATTTATGATGCACAAAGTTATCCAAATGAGAAGTGACATGCTCCTTGAGTCTCAATTTTGAGAAGTGACATGATCCTTGAGTCTCAATTTTGGATAGTTGGATTATATCCACATTATTGTATACGAGATGCTAAAGTTAGTTTTCTTGATTACATTTTGGTGATGCGTTTCACTTCTCACTTTTCAGTTCAAGTTCAATGAATCTTTCATATGATTGAATTTTTTGCTTTTAAAAACACCGAGTTCAAAGTATCATAAACCTCTTTGGAAACCCTTGTACAATCGACGACGATGAGATTGAAGGTCAAGTGTATTCTCCAAATTGTTTTTTGATAAATACTCTTTCTTTTTGATAAAATATACATTAGGCTTCGATAGGTATAAGTGTGAGAATTTGATGAATCTCTAATTTTAGGAAGTTCCTAATTTACCTAAAAGACAATTTTGCCCCTCTTCTTTCATCTATAAGTTTGTTCTTGGTTATACTGTAGGGCCAAATATTTCCACCGAAGTATGCAAAAATACCCCTCTTTTTAACGGTTGTCCACATACCTCAACGCCGCATGGCATGCCACCTCACCGCCAAATTTTCATTCTTTTTCCTTTTCTTTTCCTATTCCTTTTCTCTTTCTTACTTTTCTTCTTCACAAACTTTTTTCCCCTCTTTTTTCCAATGGCTTCCAGCAAATTCCCTTAGCTATACCTCAATAGCATCTTCCCCAATAACCCATAAAACTCACCAATTCCCTTTTTCCTCATTCATAAGAACCTCGTTCTCTCTGTAAACAAAAATCCATTAACCCAATAAATTAAAAATCAGGAAAAAAAAGAAAAGGAAGGTTCATTGATAGATACATATGCATCAAACACAACTATTATGAAATAAAATCTAAAAATGGTACAGCCCCCAGGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTAGCTTGGGTCACAGGTTCAAGCCCTACATCATGCAAAGTGAAGCCCGGTATTTAAGTGGAGAAGGGTAAAGTGGCGGGCCCATTGCCCACTGAGTTTAGAAGGCGGTAAGTGGTCCAAAGGGCGGGTCACAGATGGATTTCTCATTTATCAAGAAAATAATAAAATAAAATCTAAAAATGGTATCTTCAGGATAGGAATATTTCTAAAACTCCAAAACTCGTGTATATGGCAATGGAAGTATGAAGTTCAATTCTCTGAAAAATAGATATCAAAGAAAAATAAAATGAACACACAGATGGCCATCCTTATAGACGCTACAGAAAGAAATTTTCCTTTCATTTATGAGCAAAAGTAATGACTATTCGGGGGAAATGGTAATGGTGCTTTTACTGTTATTGGATATGGAAATTTGGTGAAGTATTGAAGAAGGGCTGTGGTGTTTTAGCCTTTAGGGAACAGAGATAAAATCGGAGCTCCAGGGAGAAGAAATAGAGCACCGAGGAAATGATGAGTTTCACGCGTTACTGGGAAAGATGCCATTGAGATATAGCTATAGGAAAGTGATGGATGCAATTGGAAAAAGAGAAGAAAAAAAGTTTGTGAAGAAGAAAGAGAAGGAAAAAAGAAAAAGAAGAAAAGGAAAAACAATTAAAATCTGGTGGTGAGGTGGCATCCACCTCACTCAAATGTCAGGCCATGTGGACAACCATTAAAAAGAGGGATATTTTTTCATACTTCGGTAACGGCAGAGACATATTTGTCCCTATAGTGTAACTAGTGAAAAACTTAACTAATAAATGAAAGTAGAGGGGTATTTTTGACCATTTCCCCAAGAATGAAATAGGGCTAACAAGTGGAATGAATGTAGAAGATACACATCAGCAATGCCTACTAATTTGGGATAAGGGTTATGTTGATTGATCGAGTGATATATTTCAGGACCTACTAGTTAGGGTAGAATGCTTTTGCAAAGGAGGTGCCGGTTGCAAAACAATAGTCTCATAAATGTTTTTTGATGTTTTCAAGCTTTATTTCTAGTTGAATGCTACAGTCCTTGAGTTAATGCTGATGAAAGCAACGGGGATATAAATCCATTTATCCGTTTTTTATCTGTAATGATCTTACATTATTTCTGTCTTTTTCTTGATCTTAGACAGGCATATGAACCTTATTCTACTAGATGAAGTGAAACACTTTTAGCCCTATTCAATTTGAAGTTTGTTAGCTTTTTTGAATCTTATTTTATCATGCATTTTGGTAAATTTTGAGAACTTGTTGTCTAGATTTTGATCTTGGGGTGACAGGTTGACTTTTGATGATTGACTCAAAAAGTAGGGTTGACAACTAGATATGCTCAACCGATTTTGTGTGTGACCTTATGTTGGTTTGGGAGGTCTAACTTAGTAGTGACTTTGTTTGGTGTCACTAATTTACCTGCCTAAAAATCTGATACTGTCTAATAGAGACGATCACGTGATATCTCAAGAGTTGATTATGCTGGCTCAACGGATTAGAAAGAAGTGAGGGAGCAGCATCAATTTTTTCATAGATAATAGTACATCTTAATGTTTTGTTTATGTTTAGCCTTTGTGGTATTCTGTGGGAGCTCAAATCTTAAGTAACTCTGACGTATGAACCGTATATACTGAACAGCATCTTTGTTCTGTTTTGCAGATACTTCCAAGGCATTCCAGAGGCAGTTTCAGAGACTGAACAAAGAGGTGGCTGTGCATGCTAAGGCGGATATAGTAATTCCATCGAGTGCCATACTTGATCCATGTTGTTGTGTATTATTTCTGCAACCGTATCATAACTCTCCGGCCATAGCCATTCTTTTGTACCCACTATTATATACTACTATTTGATTTCTTCAGTGTTGTTTTGGGAAGAGAAGCATCTTTTGTTACATTTCAGTTACTGGAAGGTAGAGAAACTCAGAAGGATTTCACTTAGTATTGCAGTTGGCTTTGACAGAGATTATAACTGTGCATCTTTTTTTATTTTCTCCATTGGGTGGTTGGTTTTATTGTATAATCTGAAAGAGCTGTATTTTTCTACATCTACGTATAAATAATGTGTTGGACTCGTAACTGCTACTGTGCTTCATTGCCATAAATTTTCGAAATGAATTTATTTT</genome_strand>
        <mrna_strand>AAATATCGAAATTGGCGCCGCTTTTCTCTGGTTTCTCTTTCTCTCTCTACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGG.....................................................................................................................................................GGTTGGTAAAACGTCATTAATGAATCA.......................................................................................................................................................................................................................................................................ATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAA.....................................................................................ATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................GCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTG......................................................................................................................................................GTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCTAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAAATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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CAACCGTATCATAACTCTCCGGCCATAGCCATTCTTTTGTACCCACTATTATATACTACTATTTGATTTCTTCAGTGTTGTTTTGGGAAGAGAAGCATCTTTTGTTACATTTCAGTTACTGGAAGGTAGAGAAACTCAGAAGGATTTCACTTAGTATTGCAGTTGGCTTTGACAGAGATTATAACTGTGCATCTTTTTTTATTTTCTCCATTGGGTGGTTGGTTTTATTGTATAATCTGAAAGAGCTGTATTTTTCTACATCTACGTATAAATAATGTGTTGGACTCGTAACTGCTACTGTGCTTCATTGCCATAAATTTTCGAAATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-DC3a4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324822" ref_strand="+" ref_description="SGN-U324822        Tomato 200607 #1 [5 ESTs aligned] genbank/nr: putative(evalue: 8e-33, score=142)">
      <seq>tcacatattctatcaaagactcttttaaagtctttcttctcaaaaataatagtattagagaccatgtttggctcttccacttcccaagaaacaacaaatgtcatttctcatcaacattatcaaaccataaaccctaatttttatgcttttcatgatcctcttatcaacatgaatcaagatcatgtccacaataataattataataagtatcaagattatgacacttcatttcttgatttgtttgttgatggtgatcaagaatattattccaattacacaaacaataatgcttcaatttatttagaaaatcccttcaagcaacaagagataagtagtagtacctatagtactagtggaaactcatcatcagctagttcatttgatgccacaccaacacatgttcacatgaataatgaaaatacaagcatagggattgagaaagaaaaaaaaggtgaaaaacatgcaattgcttttagaacaaaaacacaacttgagaccttggatgatggatacaaatggaggaaatatgggaagaagaaagtgaaaaccaacataaatctaaggaattactacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-DC3a4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="34159" stop="32698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33859" g_stop="33444" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33443" i_stop="33155" i_length="289">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33154" g_stop="33008" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="563" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-U324822" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33859" e_stop="33444"/>
          <exon e_start="33154" e_stop="33008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATATTCTATCAAAGACTCTTTTAAAGTCTTTCTTCTCAAAAATAATAGTATTAGAGACCATGTTTGGCTCTTCCACTTCCCAAGAAACAACAAATGTCATTTCTCATCAACATTATCAAACCATAAACCCTAATTTTTATGCTTTTCATGATCCTCTTATCAACATGAATCAAGATCATGTCCACAATAATAATTATAATAAGTATCAAGATTATGACACTTCATTTCTTGATTTGTTTGTTGATGGTGATCAAGAATATTATTCCAATTACACAAACAATAATGCTTCAATTTATTTAGAAAATCCCTTCAAGCAACAAGAGATAAGTAGTAGTACCTATAGTACTAGTGGAAACTCATCATCAGCTAGTTCATTTGATGCCACACCAACACATGTTCACATGAATAATGAGTAAGTCACTATGTAGACAGTGCTGGAGTTAAGATTTTGAGTTTAAAACATCATTCTGAATAGTAAATAATGTATTCTGACTAAATTATTCATGCTTAAAGTGGATCTAGCTATAACTTTTGAGTGTTATTGAACCTTAAATCGAAGTTGTAGTTCTATCTCTATAATAAGTAGATAGAGTAATTATAATAAGTATTGATAATTATTCAATGATTTTGTTGGTTCATTTATTTATTTATTTATTTATTTATTATTTACTTGTTTGTTTGGTTTTGATTTATTTTAATAGAAATACAAGCATAGGGATTGAGAAAGAAAAAAAAGGTGAAAAACATGCAATTGCTTTTAGAACAAAAACACAACTTGAGACCTTGGATGATGGATACAAATGGAGGAAATATGGGAAGAAGAAAGTGAAAACCAACATAAATCTAAG</genome_strand>
        <mrna_strand>TCACATATTCTATCAAAGACTCTTTTAAAGTCTTTCTTCTCAAAAATAATAGTATTAGAGACCATGTTTGGCTCTTCCACTTCCCAAGAAACAACAAATGTCATTTCTCATCAACATTATCAAACCATAAACCCTAATTTTTATGCTTTTCATGATCCTCTTATCAACATGAATCAAGATCATGTCCACAATAATAATTATAATAAGTATCAAGATTATGACACTTCATTTCTTGATTTGTTTGTTGATGGTGATCAAGAATATTATTCCAATTACACAAACAATAATGCTTCAATTTATTTAGAAAATCCCTTCAAGCAACAAGAGATAAGTAGTAGTACCTATAGTACTAGTGGAAACTCATCATCAGCTAGTTCATTTGATGCCACACCAACACATGTTCACATGAATAATGA.................................................................................................................................................................................................................................................................................................AAATACAAGCATAGGGATTGAGAAAGAAAAAAAAGGTGAAAAACATGCAATTGCTTTTAGAACAAAAACACAACTTGAGACCTTGGATGATGGATACAAATGGAGGAAATATGGGAAGAAGAAAGTGAAAACCAACATAAATCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-DC3a4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320497" ref_strand="+" ref_description="SGN-U320497        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:26998748-27000312 REVERSE | Aliases: F14O23.16, F14O23_16(evalue: 5e-59, score=224) genbank/nr: gi|18409911|ref|NP_565024.1| expressed protein [Arabidopsis thaliana](evalue: 3e-57, score=224)">
      <seq>ttgacgcctccacccccacccacccatccccccgcggctcttctctcccttctttttcctctctgtcatcgccggccactcaacgacgatctcaatcatggtagagatcgaagaagcatccaccggcgccgatgagatgtctccactgttatcgaacccgaaaaccgacccgatcccgtcaacccggactaagtctgttaagaccaaggtcccggagatcaaggtccatctgtataagcaagggaagggtccgatcgacgaattcacgtcgtccttaggtggatttgagcaagaccagctagaggttcgtgatattctagacaaatacgggttcaaatcggtctatgcattcaaaccggagactggccgaggtgttcctatcagattcaatccccgtaacggacgatcgattctaacctatagagatggatcggagatccatattgatggagaacctaaggactcgttgatccaacctattaccaggatattggttggtgttgcagtgatcaccctattgatagtaatggtgatgaaagagtctccagaatgggccaaaaagttgaacatcactggtggtaatatcccaccatgggtcctggctgctgcggttattctgttcacgcgcataaggaagaggaccaaggatttctttggaaaacgcccgtgatgaactgctgcttaaccacaggcaactaaattttttcgaaatttttgcatgctttgtttgtgctttatactatagtttttggattcacatgttatatatatataagctaatctaatcttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-DC3a4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49257" stop="46102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48957" g_stop="48498" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46403" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="792" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="793" polyA_stop="809"/>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-U320497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48957" e_stop="48498"/>
          <exon e_start="46734" e_stop="46403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGCCTCCACCCCCACCCACCCATCCCCCCGCGGCTCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGCTGCTTAACCACAGGCAACTAAATTTTTTCGAAATTTTTGCATGCTTTGTTTGTGCTTTATACTATAGTTTTTGGATTCACATGTTATATATATATAAGCTAATCTAATCTTATA</genome_strand>
        <mrna_strand>TTGACGCCTCCACCCCCACCCACCCATCCCCCCGCGGCTCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGCTGCTTAACCACAGGCAACTAAATTTTTTCGAAATTTTTGCATGCTTTGTTTGTGCTTTATACTATAGTTTTTGGATTCACATGTTATATATATATAAGCTAATCTAATCTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4806" PGL_stop="5633"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4806" e_stop="5633"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="4806" e_stop="5633" e_length="828"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4806" stop="5633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGAACCATTTTTTCCTACTTACTAGAGTATCAAGAAAGTATGGCTTACCAAAACATCAATGGTTGCATTTCTGATTCAATTGAAATTCTTGATCCAAAACCTCTTGCAGTAGTAGCTTCTGGTGTTGTTCATCCTCCTATTGTTGCATCTTTCAATGATAGAATTCGTCCACTTCTCGACTGTATAGACAAGCTCCGCCATCTCAACATCATGCAAGAAGGTATCCAGCTCCCAACGATCGTAGTAGTCGGAGATCAATCTTCTGGAAAGTCCAGTGTTCTTGAATCCCTTGCTGGGATCAGTCTTCCTAGAGGACAAGGCATTTGCACCAGGGTCCCTCTTGTTATGAGGCTGCAGAATGATCCAAACATCACAGCACCAAGTCTTCAGTTGGAGTACAATAACAAGTCACTCCCTGTTGATGAAATTGGCATTGCAGATGCTATCATTCTTGCTACTGATGAGATTGCTGGACATGGTAAAGGTATATCTAACTACCCTTTAACACTAGTAGTTAAGAAAAATGGTGTCCCTGATTTGACCATGGTGGATTTACCTGGTATTACTAGAGTTGCTGTACAAGGTCAACCTGAAGACATTTATGAGCAAATTTACGATATTATTATGAAATATATTGTCCCTGAGGAAAGCATAATCTTGAATGTTTTGTCAGCTACTGTTGATTTCCCTACTTGCGAGTCTATTAGAATGTCTCAGAAAGTGGACAAGACAGGGGAAAGGACTCTGGCTGTTGTGACAAAAGCTGATAAAGCCCCTGAAGGGCTGCTTGAAAAGGTTACCGCGGATGAAGTGAATATAGGGCTTG</gDNA_template>
            <first_frame> *  E  P  F  F  P  T  Y  *  S  I  K  K  V  W  L  T  K  T  S  M  V  A  F  L  I  Q  L  K  F  L  I  Q  N  L  L  Q  *  *  L  L  V  L  F  I  L  L  L  L  H  L  S  M  I  E  F  V  H  F  S  T  V  *  T  S  S  A  I  S  T  S  C  K  K  V  S  S  S  Q  R  S  *  *  S  E  I  N  L  L  E  S  P  V  F  L  N  P  L  L  G  S  V  F  L  E  D  K  A  F  A  P  G  S  L  L  L  *  G  C  R  M  I  Q  T  S  Q  H  Q  V  F  S  W  S  T  I  T  S  H  S  L  L  M  K  L  A  L  Q  M  L  S  F  L  L  L  M  R  L  L  D  M  V  K  V  Y  L  T  T  L  *  H  *  *  L  R  K  M  V  S  L  I  *  P  W  W  I  Y  L  V  L  L  E  L  L  Y  K  V  N  L  K  T  F  M  S  K  F  T  I  L  L  *  N  I  L  S  L  R  K  A  *  S  *  M  F  C  Q  L  L  L  I  S  L  L  A  S  L  L  E  C  L  R  K  W  T  R  Q  G  K  G  L  W  L  L  *  Q  K  L  I  K  P  L  K  G  C  L  K  R  L  P  R  M  K  *  I  *  G  L </first_frame>
            <second_frame>  K  N  H  F  F  L  L  T  R  V  S  R  K  Y  G  L  P  K  H  Q  W  L  H  F  *  F  N  *  N  S  *  S  K  T  S  C  S  S  S  F  W  C  C  S  S  S  Y  C  C  I  F  Q  *  *  N  S  S  T  S  R  L  Y  R  Q  A  P  P  S  Q  H  H  A  R  R  Y  P  A  P  N  D  R  S  S  R  R  S  I  F  W  K  V  Q  C  S  *  I  P  C  W  D  Q  S  S  *  R  T  R  H  L  H  Q  G  P  S  C  Y  E  A  A  E  *  S  K  H  H  S  T  K  S  S  V  G  V  Q  *  Q  V  T  P  C  *  *  N  W  H  C  R  C  Y  H  S  C  Y  *  *  D  C  W  T  W  *  R  Y  I  *  L  P  F  N  T  S  S  *  E  K  W  C  P  *  F  D  H  G  G  F  T  W  Y  Y  *  S  C  C  T  R  S  T  *  R  H  L  *  A  N  L  R  Y  Y  Y  E  I  Y  C  P  *  G  K  H  N  L  E  C  F  V  S  Y  C  *  F  P  Y  L  R  V  Y  *  N  V  S  E  S  G  Q  D  R  G  K  D  S  G  C  C  D  K  S  *  *  S  P  *  R  A  A  *  K  G  Y  R  G  *  S  E  Y  R  A   </second_frame>
            <third_frame>   R  T  I  F  S  Y  L  L  E  Y  Q  E  S  M  A  Y  Q  N  I  N  G  C  I  S  D  S  I  E  I  L  D  P  K  P  L  A  V  V  A  S  G  V  V  H  P  P  I  V  A  S  F  N  D  R  I  R  P  L  L  D  C  I  D  K  L  R  H  L  N  I  M  Q  E  G  I  Q  L  P  T  I  V  V  V  G  D  Q  S  S  G  K  S  S  V  L  E  S  L  A  G  I  S  L  P  R  G  Q  G  I  C  T  R  V  P  L  V  M  R  L  Q  N  D  P  N  I  T  A  P  S  L  Q  L  E  Y  N  N  K  S  L  P  V  D  E  I  G  I  A  D  A  I  I  L  A  T  D  E  I  A  G  H  G  K  G  I  S  N  Y  P  L  T  L  V  V  K  K  N  G  V  P  D  L  T  M  V  D  L  P  G  I  T  R  V  A  V  Q  G  Q  P  E  D  I  Y  E  Q  I  Y  D  I  I  M  K  Y  I  V  P  E  E  S  I  I  L  N  V  L  S  A  T  V  D  F  P  T  C  E  S  I  R  M  S  Q  K  V  D  K  T  G  E  R  T  L  A  V  V  T  K  A  D  K  A  P  E  G  L  L  E  K  V  T  A  D  E  V  N  I  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4808" stop="5632"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTIFSYLLEYQESMAYQNINGCISDSIEILDPKPLAVVASGVVHPPIVASFNDRIRPLLDCIDKLRHLNIMQEGIQLPTIVVVGDQSSGKSSVLESLAGISLPRGQGICTRVPLVMRLQNDPNITAPSLQLEYNNKSLPVDEIGIADAIILATDEIAGHGKGISNYPLTLVVKKNGVPDLTMVDLPGITRVAVQGQPEDIYEQIYDIIMKYIVPEESIILNVLSATVDFPTCESIRMSQKVDKTGERTLAVVTKADKAPEGLLEKVTADEVNIGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6409" PGL_stop="6788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6409" e_stop="6788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="6409" e_stop="6788" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6409" stop="6788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345809" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTGACTATTTAACTACTTATAGTAAGTTCATGGCTCAACAAAACACGTTCATGGAGATTATGAATGATCATGGGAAGTACTCCATGATAAACCTTGAAGGGGTAGGAGTAATCGACGTTGGTCATTTGAGGAAGCATCTAGATGTGGTGCAACAGGCTTTCGATTTGAAGATGAGAATGATGGCCTACTGGAAAATTGTGCTAATGAGGCTGGTGGATTCTATGGCCTTACACATAATGTTCAGCATACGAAACATGATTAACAAGGAGATGGAAAACGAGATCATACAGGATCTGATGGCACCACATGGTGGTGGAATTGAAAGAATGCTTGACGAGTCACCTTTGGTTGCTGAGAAACGCAATAGGCTCAAAAAGA</gDNA_template>
            <first_frame> S  *  L  F  N  Y  L  *  *  V  H  G  S  T  K  H  V  H  G  D  Y  E  *  S  W  E  V  L  H  D  K  P  *  R  G  R  S  N  R  R  W  S  F  E  E  A  S  R  C  G  A  T  G  F  R  F  E  D  E  N  D  G  L  L  E  N  C  A  N  E  A  G  G  F  Y  G  L  T  H  N  V  Q  H  T  K  H  D  *  Q  G  D  G  K  R  D  H  T  G  S  D  G  T  T  W  W  W  N  *  K  N  A  *  R  V  T  F  G  C  *  E  T  Q  *  A  Q  K   </first_frame>
            <second_frame>  P  D  Y  L  T  T  Y  S  K  F  M  A  Q  Q  N  T  F  M  E  I  M  N  D  H  G  K  Y  S  M  I  N  L  E  G  V  G  V  I  D  V  G  H  L  R  K  H  L  D  V  V  Q  Q  A  F  D  L  K  M  R  M  M  A  Y  W  K  I  V  L  M  R  L  V  D  S  M  A  L  H  I  M  F  S  I  R  N  M  I  N  K  E  M  E  N  E  I  I  Q  D  L  M  A  P  H  G  G  G  I  E  R  M  L  D  E  S  P  L  V  A  E  K  R  N  R  L  K  K  </second_frame>
            <third_frame>   L  T  I  *  L  L  I  V  S  S  W  L  N  K  T  R  S  W  R  L  *  M  I  M  G  S  T  P  *  *  T  L  K  G  *  E  *  S  T  L  V  I  *  G  S  I  *  M  W  C  N  R  L  S  I  *  R  *  E  *  W  P  T  G  K  L  C  *  *  G  W  W  I  L  W  P  Y  T  *  C  S  A  Y  E  T  *  L  T  R  R  W  K  T  R  S  Y  R  I  *  W  H  H  M  V  V  E  L  K  E  C  L  T  S  H  L  W  L  L  R  N  A  I  G  S  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6410" stop="6787"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PDYLTTYSKFMAQQNTFMEIMNDHGKYSMINLEGVGVIDVGHLRKHLDVVQQAFDLKMRMMAYWKIVLMRLVDSMALHIMFSIRNMINKEMENEIIQDLMAPHGGGIERMLDESPLVAEKRNRLKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17136" PGL_stop="9812"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17136" e_stop="16922"/>
            <exon e_start="15585" e_stop="15534"/>
            <exon e_start="15171" e_stop="15098"/>
            <exon e_start="14136" e_stop="14035"/>
            <exon e_start="12697" e_stop="12557"/>
            <exon e_start="11505" e_stop="11454"/>
            <exon e_start="11246" e_stop="11173"/>
            <exon e_start="10291" e_stop="10202"/>
            <exon e_start="9883" e_stop="9812"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="0.995"/>
          <exon-intron don_prob="0.904" acc_prob="0.318" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.724" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.626" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="17136" e_stop="16922" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="16921" i_stop="15586" i_length="1336"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15585" e_stop="15534" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.904" acc_prob="0.318">
            <gDNA_intron_boundary i_start="15533" i_stop="15172" i_length="362"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15171" e_stop="15098" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.771">
            <gDNA_intron_boundary i_start="15097" i_stop="14137" i_length="961"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14136" e_stop="14035" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.957" acc_prob="0.946">
            <gDNA_intron_boundary i_start="14034" i_stop="12698" i_length="1337"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12697" e_stop="12557" e_length="141"/>
          </exon>
          <intron i_serial="5" don_prob="0.941" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12556" i_stop="11506" i_length="1051"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11505" e_stop="11454" e_length="52"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="11453" i_stop="11247" i_length="207"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="11246" e_stop="11173" e_length="74"/>
          </exon>
          <intron i_serial="7" don_prob="0.724" acc_prob="0.873">
            <gDNA_intron_boundary i_start="11172" i_stop="10292" i_length="881"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="10291" e_stop="10202" e_length="90"/>
          </exon>
          <intron i_serial="8" don_prob="0.626" acc_prob="0.981">
            <gDNA_intron_boundary i_start="10201" i_stop="9884" i_length="318"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="9883" e_stop="9812" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17136" stop="16922"/>
              <exon start="15585" stop="15534"/>
              <exon start="15171" stop="15098"/>
              <exon start="14136" stop="14035"/>
              <exon start="12697" stop="12557"/>
              <exon start="11505" stop="11454"/>
              <exon start="11246" stop="11173"/>
              <exon start="10291" stop="10202"/>
              <exon start="9883" stop="9812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAATGGCCTTCTCACATTTTCTCCCCTTTTCAGTACGCTTCCTTTCTCTCTTCTGCAACACTCGAAGACGAAGACCGAATACTCAAAAATGGCAGCAACTTTAGCAATTGCATTGAAGAGTCTCTTCTCTGTGTTGGGATGTTTGATTACAGCCACCGTAATATACACCGTCGCCACTGATGGCCTTCCTTTCCGCATAGAACTCCTTACCCC : GTGGATGGCAGCTACCCTGATAGATTTCTACATCCACATATTTGTTATATGG : TCTTGGGTTGTCTACAAGGAATCAAACTGGATTACTGCAATACTTTGGGTGGTCTTGCTAGTATGTTTGGGAAG : CATTGCTACATGTGGCTACATCGTGTTGCAATTTCTTAAGCTTTCAACTCAGGAATCTTTACAGGATCCAATTTACTTTGTCCTATTACGACGTCAGGAAAA : GACTGAAACAGAACAACAGAAGAAATGTTCTCTTTTAACTGCAAGAATTCTATTTCCTGCTTTGGGCTGTCTGATGCTAGGGACATTGATTTACACCATTGTAACTGATGGTTCTCCATTTCGCAGAGATGTTTTTACTCC : GTGGGTGATAGCAACAGTGATTGATTTCTATGTTGGTGTTGTGGCTCTCTCG : GTTTGGGTTGCTTATAAGGAATCAAGTTGGCTGAGTGCAGCTTTATGGATAATACTTATAATTTGTTCTGGCAG : CATCAGCACATGTGCCTATATAGCTCTTCAGCTTTTCAATCTTTCATCTCAAGATCCCGTCTACCTTGTTCTTTTCAGCAGCCGCAACAG : AAAAAGGGTATGAAGTAACGTCTCGAACAGAGAGCATCGGAGAGGGTCAATTGAGGAAGAAGCTTTGTGGTT</gDNA_template>
            <first_frame> S  N  G  L  L  T  F  S  P  L  F  S  T  L  P  F  S  L  L  Q  H  S  K  T  K  T  E  Y  S  K  M  A  A  T  L  A  I  A  L  K  S  L  F  S  V  L  G  C  L  I  T  A  T  V  I  Y  T  V  A  T  D  G  L  P  F  R  I  E  L  L  T  P :   W  M  A  A  T  L  I  D  F  Y  I  H  I  F  V  I  W  :  S  W  V  V  Y  K  E  S  N  W  I  T  A  I  L  W  V  V  L  L  V  C  L  G  S :   I  A  T  C  G  Y  I  V  L  Q  F  L  K  L  S  T  Q  E  S  L  Q  D  P  I  Y  F  V  L  L  R  R  Q  E  K :   T  E  T  E  Q  Q  K  K  C  S  L  L  T  A  R  I  L  F  P  A  L  G  C  L  M  L  G  T  L  I  Y  T  I  V  T  D  G  S  P  F  R  R  D  V  F  T  P :   W  V  I  A  T  V  I  D  F  Y  V  G  V  V  A  L  S  :  V  W  V  A  Y  K  E  S  S  W  L  S  A  A  L  W  I  I  L  I  I  C  S  G  S :   I  S  T  C  A  Y  I  A  L  Q  L  F  N  L  S  S  Q  D  P  V  Y  L  V  L  F  S  S  R  N  R :   K  R  V  *  S  N  V  S  N  R  E  H  R  R  G  S  I  E  E  E  A  L  W   </first_frame>
            <second_frame>  A  M  A  F  S  H  F  L  P  F  S  V  R  F  L  S  L  F  C  N  T  R  R  R  R  P  N  T  Q  K  W  Q  Q  L  *  Q  L  H  *  R  V  S  S  L  C  W  D  V  *  L  Q  P  P  *  Y  T  P  S  P  L  M  A  F  L  S  A  *  N  S  L  P   : R  G  W  Q  L  P  *  *  I  S  T  S  T  Y  L  L  Y  G :   L  G  L  S  T  R  N  Q  T  G  L  L  Q  Y  F  G  W  S  C  *  Y  V  W  E   : A  L  L  H  V  A  T  S  C  C  N  F  L  S  F  Q  L  R  N  L  Y  R  I  Q  F  T  L  S  Y  Y  D  V  R  K   : R  L  K  Q  N  N  R  R  N  V  L  F  *  L  Q  E  F  Y  F  L  L  W  A  V  *  C  *  G  H  *  F  T  P  L  *  L  M  V  L  H  F  A  E  M  F  L  L   : R  G  *  *  Q  Q  *  L  I  S  M  L  V  L  W  L  S  R :   F  G  L  L  I  R  N  Q  V  G  *  V  Q  L  Y  G  *  Y  L  *  F  V  L  A   : A  S  A  H  V  P  I  *  L  F  S  F  S  I  F  H  L  K  I  P  S  T  L  F  F  S  A  A  A  T   : E  K  G  Y  E  V  T  S  R  T  E  S  I  G  E  G  Q  L  R  K  K  L  C  G  </second_frame>
            <third_frame>   Q  W  P  S  H  I  F  S  P  F  Q  Y  A  S  F  L  S  S  A  T  L  E  D  E  D  R  I  L  K  N  G  S  N  F  S  N  C  I  E  E  S  L  L  C  V  G  M  F  D  Y  S  H  R  N  I  H  R  R  H  *  W  P  S  F  P  H  R  T  P  Y  P  :  V  D  G  S  Y  P  D  R  F  L  H  P  H  I  C  Y  M   : V  L  G  C  L  Q  G  I  K  L  D  Y  C  N  T  L  G  G  L  A  S  M  F  G  K  :  H  C  Y  M  W  L  H  R  V  A  I  S  *  A  F  N  S  G  I  F  T  G  S  N  L  L  C  P  I  T  T  S  G  K  :  D  *  N  R  T  T  E  E  M  F  S  F  N  C  K  N  S  I  S  C  F  G  L  S  D  A  R  D  I  D  L  H  H  C  N  *  W  F  S  I  S  Q  R  C  F  Y  S  :  V  G  D  S  N  S  D  *  F  L  C  W  C  C  G  S  L   : G  L  G  C  L  *  G  I  K  L  A  E  C  S  F  M  D  N  T  Y  N  L  F  W  Q  :  H  Q  H  M  C  L  Y  S  S  S  A  F  Q  S  F  I  S  R  S  R  L  P  C  S  F  Q  Q  P  Q  Q  :  K  K  G  M  K  *  R  L  E  Q  R  A  S  E  R  V  N  *  G  R  S  F  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17136" stop="16922"/>
                    <exon start="15585" stop="15534"/>
                    <exon start="15171" stop="15098"/>
                    <exon start="14136" stop="14035"/>
                    <exon start="12697" stop="12557"/>
                    <exon start="11505" stop="11454"/>
                    <exon start="11246" stop="11173"/>
                    <exon start="10291" stop="10202"/>
                    <exon start="9883" stop="9871"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNGLLTFSPLFSTLPFSLLQHSKTKTEYSKMAATLAIALKSLFSVLGCLITATVIYTVATDGLPFRIELLTPWMAATLIDFYIHIFVIWSWVVYKESNWITAILWVVLLVCLGSIATCGYIVLQFLKLSTQESLQDPIYFVLLRRQEKTETEQQKKCSLLTARILFPALGCLMLGTLIYTIVTDGSPFRRDVFTPWVIATVIDFYVGVVALSVWVAYKESSWLSAALWIILIICSGSISTCAYIALQLFNLSSQDPVYLVLFSSRNRKRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12408" e_stop="11949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12408" e_stop="11949" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12408" stop="11949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343239" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTGTTTGAACTATAATTAGATCTCCGCTCTGCTGCTTTCTAAATTGATGCACTTTATGGGGAAGTAGCATAAACCTCTCGTAACTGGAAGTTTTTGTGCTATTGTGGAGGAAAACTCCCTTTTCATTTATTCAATGTCATATCAGCATTTTATTTATTTAAGGAAGTATATATGTCTTCCTGGAATGAGTTCCTAAATGAGAGAATATCTGCACTACAGTGATTCGAAGGTTGGGATGAGGTTACTGAAAATGACTTGTGCTCTCAGAATGTATAAAATTTCTATTAATAATATTGCCTCTCTCATTTTTCATGAACAAGGACTATTGATGATTTCTTACCTCATGTTAATCGTTTAATCCTTATTTGTTTCTTACCGTGTTAACTTTAAATATTATAACATATGATTAGACTGATCTATGGTGAGCTTTATAACTTTTCCCTATGTAACATGATACT</gDNA_template>
            <first_frame> S  C  L  N  Y  N  *  I  S  A  L  L  L  S  K  L  M  H  F  M  G  K  *  H  K  P  L  V  T  G  S  F  C  A  I  V  E  E  N  S  L  F  I  Y  S  M  S  Y  Q  H  F  I  Y  L  R  K  Y  I  C  L  P  G  M  S  S  *  M  R  E  Y  L  H  Y  S  D  S  K  V  G  M  R  L  L  K  M  T  C  A  L  R  M  Y  K  I  S  I  N  N  I  A  S  L  I  F  H  E  Q  G  L  L  M  I  S  Y  L  M  L  I  V  *  S  L  F  V  S  Y  R  V  N  F  K  Y  Y  N  I  *  L  D  *  S  M  V  S  F  I  T  F  P  Y  V  T  *  Y  </first_frame>
            <second_frame>  L  V  *  T  I  I  R  S  P  L  C  C  F  L  N  *  C  T  L  W  G  S  S  I  N  L  S  *  L  E  V  F  V  L  L  W  R  K  T  P  F  S  F  I  Q  C  H  I  S  I  L  F  I  *  G  S  I  Y  V  F  L  E  *  V  P  K  *  E  N  I  C  T  T  V  I  R  R  L  G  *  G  Y  *  K  *  L  V  L  S  E  C  I  K  F  L  L  I  I  L  P  L  S  F  F  M  N  K  D  Y  *  *  F  L  T  S  C  *  S  F  N  P  Y  L  F  L  T  V  L  T  L  N  I  I  T  Y  D  *  T  D  L  W  *  A  L  *  L  F  P  M  *  H  D  T </second_frame>
            <third_frame>   L  F  E  L  *  L  D  L  R  S  A  A  F  *  I  D  A  L  Y  G  E  V  A  *  T  S  R  N  W  K  F  L  C  Y  C  G  G  K  L  P  F  H  L  F  N  V  I  S  A  F  Y  L  F  K  E  V  Y  M  S  S  W  N  E  F  L  N  E  R  I  S  A  L  Q  *  F  E  G  W  D  E  V  T  E  N  D  L  C  S  Q  N  V  *  N  F  Y  *  *  Y  C  L  S  H  F  S  *  T  R  T  I  D  D  F  L  P  H  V  N  R  L  I  L  I  C  F  L  P  C  *  L  *  I  L  *  H  M  I  R  L  I  Y  G  E  L  Y  N  F  S  L  C  N  M  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0066O12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="29000" PGL_stop="18676"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29000" e_stop="28805"/>
            <exon e_start="28655" e_stop="28629"/>
            <exon e_start="28365" e_stop="28266"/>
            <exon e_start="28180" e_stop="28034"/>
            <exon e_start="27655" e_stop="27575"/>
            <exon e_start="27424" e_stop="27282"/>
            <exon e_start="19138" e_stop="18676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.423" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29000" e_stop="28805" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="28804" i_stop="28656" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28655" e_stop="28629" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28628" i_stop="28366" i_length="263"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28365" e_stop="28266" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.423" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28265" i_stop="28181" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28180" e_stop="28034" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28033" i_stop="27656" i_length="378"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27655" e_stop="27575" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.848" acc_prob="0.995">
            <gDNA_intron_boundary i_start="27574" i_stop="27425" i_length="150"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27424" e_stop="27282" e_length="143"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27281" i_stop="19139" i_length="8143"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="19138" e_stop="18676" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29000" stop="28805"/>
              <exon start="28655" stop="28629"/>
              <exon start="28365" stop="28266"/>
              <exon start="28180" stop="28034"/>
              <exon start="27655" stop="27575"/>
              <exon start="27424" stop="27282"/>
              <exon start="19138" stop="18676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATATCGAAATTGGCGCCGCTTTTCTCTGGTTTCTCTTTCTCTCTCTACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGG : GGTTGGTAAAACGTCATTAATGAATCA : ATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAA : ATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAG : GCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTG : GTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCTAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAAATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATAT : ATACTTCCAAGGCATTCCAGAGGCAGTTTCAGAGACTGAACAAAGAGGTGGCTGTGCATGCTAAGGCGGATATAGTAATTCCATCGAGTGCCATACTTGATCCATGTTGTTGTGTATTATTTCTGCAACCGTATCATAACTCTCCGGCCATAGCCATTCTTTTGTACCCACTATTATATACTACTATTTGATTTCTTCAGTGTTGTTTTGGGAAGAGAAGCATCTTTTGTTACATTTCAGTTACTGGAAGGTAGAGAAACTCAGAAGGATTTCACTTAGTATTGCAGTTGGCTTTGACAGAGATTATAACTGTGCATCTTTTTTTATTTTCTCCATTGGGTGGTTGGTTTTATTGTATAATCTGAAAGAGCTGTATTTTTCTACATCTACGTATAAATAATGTGTTGGACTCGTAACTGCTACTGTGCTTCATTGCCATAAATTTTCGAAATGAATTTATTTT</gDNA_template>
            <first_frame> K  Y  R  N  W  R  R  F  S  L  V  S  L  S  L  S  T  I  P  F  L  L  S  S  E  N  C  Q  P  R  F  E  I  P  K  F  H  I  Q  G  S  L  L  I  S  L  S  P  C  L  F  V  E  E  P  C  L  K  L  S  S  L  A  I  V   : G  L  V  K  R  H  *  *  I   : N  M  Y  T  R  S  S  V  S  N  I  K  L  Q  L  E  L  I  S  *  Q  R  S  F  K  L  M  T  G  L  L  H  S  K :   Y  G  I  R  P  V  K  R  D  S  R  V  L  E  L  H  F  I  E  V  Q  I  A  V  F  W  S  M  M  L  M  *  C  D  P  L  I  T  L  T  I  G  M  K  N  F  S  N  R :   L  I  R  Q  T  L  K  H  F  L  S  Y  Y  W  G  T  R  L  I  *  M  V  E  I  A  E  W :   F  L  R  R  K  Q  R  S  G  V  L  L  K  G  Y  L  T  L  R  H  Q  Q  K  R  I  *  M  L  M  L  H  S  C  L  L  Q  K  L  P  W  P  M  S  T  S  R  I   : Y  T  S  K  A  F  Q  R  Q  F  Q  R  L  N  K  E  V  A  V  H  A  K  A  D  I  V  I  P  S  S  A  I  L  D  P  C  C  C  V  L  F  L  Q  P  Y  H  N  S  P  A  I  A  I  L  L  Y  P  L  L  Y  T  T  I  *  F  L  Q  C  C  F  G  K  R  S  I  F  C  Y  I  S  V  T  G  R  *  R  N  S  E  G  F  H  L  V  L  Q  L  A  L  T  E  I  I  T  V  H  L  F  L  F  S  P  L  G  G  W  F  Y  C  I  I  *  K  S  C  I  F  L  H  L  R  I  N  N  V  L  D  S  *  L  L  L  C  F  I  A  I  N  F  R  N  E  F  I   </first_frame>
            <second_frame>  N  I  E  I  G  A  A  F  L  W  F  L  F  L  S  L  Q  S  P  F  F  S  L  L  K  I  V  N  P  D  L  K  F  P  N  S  I  Y  R  V  H  F  *  F  L  F  R  H  V  Y  S  *  K  N  L  A  *  S  Y  R  P  W  R  *  W  :  G  W  *  N  V  I  N  E  S  :  I  C  T  Q  E  V  Q  S  A  I  *  S  Y  N  W  S  *  F  R  D  K  G  A  S  N  *  *  Q  A  C  Y  T  P   : N  M  G  Y  G  R  S  R  E  I  P  E  S  W  S  C  I  L  *  R  C  R  L  L  C  F  G  L  *  C  *  C  N  A  I  L  *  *  P  *  Q  L  A  *  R  I  S  Q  T   : G  *  S  A  R  P  *  N  I  S  F  H  I  T  G  E  Q  D  *  Y  R  W  W  K  *  P  S   : G  F  *  E  E  S  K  G  V  V  Y  F  *  R  D  T  L  L  *  D  I  S  K  R  G  Y  K  C  *  C  C  I  L  V  Y  C  K  N  C  L  G  Q  *  A  R  A  G  Y  :  I  L  P  R  H  S  R  G  S  F  R  D  *  T  K  R  W  L  C  M  L  R  R  I  *  *  F  H  R  V  P  Y  L  I  H  V  V  V  Y  Y  F  C  N  R  I  I  T  L  R  P  *  P  F  F  C  T  H  Y  Y  I  L  L  F  D  F  F  S  V  V  L  G  R  E  A  S  F  V  T  F  Q  L  L  E  G  R  E  T  Q  K  D  F  T  *  Y  C  S  W  L  *  Q  R  L  *  L  C  I  F  F  Y  F  L  H  W  V  V  G  F  I  V  *  S  E  R  A  V  F  F  Y  I  Y  V  *  I  M  C  W  T  R  N  C  Y  C  A  S  L  P  *  I  F  E  M  N  L  F  </second_frame>
            <third_frame>   I  S  K  L  A  P  L  F  S  G  F  S  F  S  L  Y  N  P  L  S  S  L  F  *  K  L  S  T  Q  I  *  N  S  Q  I  P  Y  T  G  F  T  F  D  F  S  F  A  M  S  I  R  R  R  T  L  L  K  V  I  V  L  G  D  S  G :   V  G  K  T  S  L  M  N  Q :   Y  V  H  K  K  F  S  Q  Q  Y  K  A  T  I  G  A  D  F  V  T  K  E  L  Q  I  D  D  R  L  V  T  L  Q  :  I  W  D  T  A  G  Q  E  R  F  Q  S  L  G  V  A  F  Y  R  G  A  D  C  C  V  L  V  Y  D  V  N  V  M  R  S  F  D  N  L  D  N  W  H  E  E  F  L  K  Q  :  A  N  P  P  D  P  K  T  F  P  F  I  L  L  G  N  K  I  D  I  D  G  G  N  S  R  V  :  V  S  E  K  K  A  K  E  W  C  T  S  K  G  I  P  Y  F  E  T  S  A  K  E  D  I  N  V  D  A  A  F  L  S  I  A  K  T  A  L  A  N  E  H  E  Q  D  I :   Y  F  Q  G  I  P  E  A  V  S  E  T  E  Q  R  G  G  C  A  C  *  G  G  Y  S  N  S  I  E  C  H  T  *  S  M  L  L  C  I  I  S  A  T  V  S  *  L  S  G  H  S  H  S  F  V  P  T  I  I  Y  Y  Y  L  I  S  S  V  L  F  W  E  E  K  H  L  L  L  H  F  S  Y  W  K  V  E  K  L  R  R  I  S  L  S  I  A  V  G  F  D  R  D  Y  N  C  A  S  F  F  I  F  S  I  G  W  L  V  L  L  Y  N  L  K  E  L  Y  F  S  T  S  T  Y  K  *  C  V  G  L  V  T  A  T  V  L  H  C  H  K  F  S  K  *  I  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28905" stop="28805"/>
                    <exon start="28655" stop="28629"/>
                    <exon start="28365" stop="28266"/>
                    <exon start="28180" stop="28034"/>
                    <exon start="27655" stop="27575"/>
                    <exon start="27424" stop="27282"/>
                    <exon start="19138" stop="19075"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSQIPYTGFTFDFSFAMSIRRRTLLKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMRSFDNLDNWHEEFLKQANPPDPKTFPFILLGNKIDIDGGNSRVVSEKKAKEWCTSKGIPYFETSAKEDINVDAAFLSIAKTALANEHEQDIYFQGIPEAVSETEQRGGCAC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18999" stop="18739"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSGHSHSFVPTIIYYYLISSVLFWEEKHLLLHFSYWKVEKLRRISLSIAVGFDRDYNCASFFIFSIGWLVLLYNLKELYFSTSTYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="33859" PGL_stop="33008"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33859" e_stop="33444"/>
            <exon e_start="33154" e_stop="33008"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33859" e_stop="33444" e_length="416"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33443" i_stop="33155" i_length="289"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33154" e_stop="33008" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33859" stop="33444"/>
              <exon start="33154" stop="33008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324822" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACATATTCTATCAAAGACTCTTTTAAAGTCTTTCTTCTCAAAAATAATAGTATTAGAGACCATGTTTGGCTCTTCCACTTCCCAAGAAACAACAAATGTCATTTCTCATCAACATTATCAAACCATAAACCCTAATTTTTATGCTTTTCATGATCCTCTTATCAACATGAATCAAGATCATGTCCACAATAATAATTATAATAAGTATCAAGATTATGACACTTCATTTCTTGATTTGTTTGTTGATGGTGATCAAGAATATTATTCCAATTACACAAACAATAATGCTTCAATTTATTTAGAAAATCCCTTCAAGCAACAAGAGATAAGTAGTAGTACCTATAGTACTAGTGGAAACTCATCATCAGCTAGTTCATTTGATGCCACACCAACACATGTTCACATGAATAATGA : AAATACAAGCATAGGGATTGAGAAAGAAAAAAAAGGTGAAAAACATGCAATTGCTTTTAGAACAAAAACACAACTTGAGACCTTGGATGATGGATACAAATGGAGGAAATATGGGAAGAAGAAAGTGAAAACCAACATAAATCTAAG</gDNA_template>
            <first_frame> S  H  I  L  S  K  T  L  L  K  S  F  F  S  K  I  I  V  L  E  T  M  F  G  S  S  T  S  Q  E  T  T  N  V  I  S  H  Q  H  Y  Q  T  I  N  P  N  F  Y  A  F  H  D  P  L  I  N  M  N  Q  D  H  V  H  N  N  N  Y  N  K  Y  Q  D  Y  D  T  S  F  L  D  L  F  V  D  G  D  Q  E  Y  Y  S  N  Y  T  N  N  N  A  S  I  Y  L  E  N  P  F  K  Q  Q  E  I  S  S  S  T  Y  S  T  S  G  N  S  S  S  A  S  S  F  D  A  T  P  T  H  V  H  M  N  N  E :   N  T  S  I  G  I  E  K  E  K  K  G  E  K  H  A  I  A  F  R  T  K  T  Q  L  E  T  L  D  D  G  Y  K  W  R  K  Y  G  K  K  K  V  K  T  N  I  N  L   </first_frame>
            <second_frame>  H  I  F  Y  Q  R  L  F  *  S  L  S  S  Q  K  *  *  Y  *  R  P  C  L  A  L  P  L  P  K  K  Q  Q  M  S  F  L  I  N  I  I  K  P  *  T  L  I  F  M  L  F  M  I  L  L  S  T  *  I  K  I  M  S  T  I  I  I  I  I  S  I  K  I  M  T  L  H  F  L  I  C  L  L  M  V  I  K  N  I  I  P  I  T  Q  T  I  M  L  Q  F  I  *  K  I  P  S  S  N  K  R  *  V  V  V  P  I  V  L  V  E  T  H  H  Q  L  V  H  L  M  P  H  Q  H  M  F  T  *  I  M   : K  I  Q  A  *  G  L  R  K  K  K  K  V  K  N  M  Q  L  L  L  E  Q  K  H  N  L  R  P  W  M  M  D  T  N  G  G  N  M  G  R  R  K  *  K  P  T  *  I  *  </second_frame>
            <third_frame>   T  Y  S  I  K  D  S  F  K  V  F  L  L  K  N  N  S  I  R  D  H  V  W  L  F  H  F  P  R  N  N  K  C  H  F  S  S  T  L  S  N  H  K  P  *  F  L  C  F  S  *  S  S  Y  Q  H  E  S  R  S  C  P  Q  *  *  L  *  *  V  S  R  L  *  H  F  I  S  *  F  V  C  *  W  *  S  R  I  L  F  Q  L  H  K  Q  *  C  F  N  L  F  R  K  S  L  Q  A  T  R  D  K  *  *  Y  L  *  Y  *  W  K  L  I  I  S  *  F  I  *  C  H  T  N  T  C  S  H  E  *  *  :  K  Y  K  H  R  D  *  E  R  K  K  R  *  K  T  C  N  C  F  *  N  K  N  T  T  *  D  L  G  *  W  I  Q  M  E  E  I  W  E  E  E  S  E  N  Q  H  K  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33859" stop="33444"/>
                    <exon start="33154" stop="33010"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHILSKTLLKSFFSKIIVLETMFGSSTSQETTNVISHQHYQTINPNFYAFHDPLINMNQDHVHNNNYNKYQDYDTSFLDLFVDGDQEYYSNYTNNNASIYLENPFKQQEISSSTYSTSGNSSSASSFDATPTHVHMNNENTSIGIEKEKKGEKHAIAFRTKTQLETLDDGYKWRKYGKKKVKTNINL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="48957" PGL_stop="46403"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48957" e_stop="48498"/>
            <exon e_start="46734" e_stop="46403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48957" e_stop="48498" e_length="460"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46734" e_stop="46403" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48957" stop="48498"/>
              <exon start="46734" stop="46403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320497" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGACGCCTCCACCCCCACCCACCCATCCCCCCGCGGCTCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAG : GACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGCTGCTTAACCACAGGCAACTAAATTTTTTCGAAATTTTTGCATGCTTTGTTTGTGCTTTATACTATAGTTTTTGGATTCACATGTTATATATATATAAGCTAATCTAATCTTATA</gDNA_template>
            <first_frame> L  T  P  P  P  P  P  T  H  P  P  A  A  L  L  S  L  L  F  P  L  C  H  R  R  P  L  N  D  D  L  N  H  G  R  D  R  R  S  I  H  R  R  R  *  D  V  S  T  V  I  E  P  E  N  R  P  D  P  V  N  P  D  *  V  C  *  D  Q  G  P  G  D  Q  G  P  S  V  *  A  R  E  G  S  D  R  R  I  H  V  V  L  R  W  I  *  A  R  P  A  R  G  S  *  Y  S  R  Q  I  R  V  Q  I  G  L  C  I  Q  T  G  D  W  P  R  C  S  Y  Q  I  Q  S  P  *  R  T  I  D  S  N  L  *  R  W  I  G  D  P  Y  *  W  R  T  *   : G  L  V  D  P  T  Y  Y  Q  D  I  G  W  C  C  S  D  H  P  I  D  S  N  G  D  E  R  V  S  R  M  G  Q  K  V  E  H  H  W  W  *  Y  P  T  M  G  P  G  C  C  G  Y  S  V  H  A  H  K  E  E  D  Q  G  F  L  W  K  T  P  V  M  N  C  C  L  T  T  G  N  *  I  F  S  K  F  L  H  A  L  F  V  L  Y  T  I  V  F  G  F  T  C  Y  I  Y  I  S  *  S  N  L  I </first_frame>
            <second_frame>  *  R  L  H  P  H  P  P  I  P  P  R  L  F  S  P  F  F  F  L  S  V  I  A  G  H  S  T  T  I  S  I  M  V  E  I  E  E  A  S  T  G  A  D  E  M  S  P  L  L  S  N  P  K  T  D  P  I  P  S  T  R  T  K  S  V  K  T  K  V  P  E  I  K  V  H  L  Y  K  Q  G  K  G  P  I  D  E  F  T  S  S  L  G  G  F  E  Q  D  Q  L  E  V  R  D  I  L  D  K  Y  G  F  K  S  V  Y  A  F  K  P  E  T  G  R  G  V  P  I  R  F  N  P  R  N  G  R  S  I  L  T  Y  R  D  G  S  E  I  H  I  D  G  E  P  K  :  D  S  L  I  Q  P  I  T  R  I  L  V  G  V  A  V  I  T  L  L  I  V  M  V  M  K  E  S  P  E  W  A  K  K  L  N  I  T  G  G  N  I  P  P  W  V  L  A  A  A  V  I  L  F  T  R  I  R  K  R  T  K  D  F  F  G  K  R  P  *  *  T  A  A  *  P  Q  A  T  K  F  F  R  N  F  C  M  L  C  L  C  F  I  L  *  F  L  D  S  H  V  I  Y  I  *  A  N  L  I  L   </second_frame>
            <third_frame>   D  A  S  T  P  T  H  P  S  P  R  G  S  S  L  P  S  F  S  S  L  S  S  P  A  T  Q  R  R  S  Q  S  W  *  R  S  K  K  H  P  P  A  P  M  R  C  L  H  C  Y  R  T  R  K  P  T  R  S  R  Q  P  G  L  S  L  L  R  P  R  S  R  R  S  R  S  I  C  I  S  K  G  R  V  R  S  T  N  S  R  R  P  *  V  D  L  S  K  T  S  *  R  F  V  I  F  *  T  N  T  G  S  N  R  S  M  H  S  N  R  R  L  A  E  V  F  L  S  D  S  I  P  V  T  D  D  R  F  *  P  I  E  M  D  R  R  S  I  L  M  E  N  L  R :   T  R  *  S  N  L  L  P  G  Y  W  L  V  L  Q  *  S  P  Y  *  *  *  W  *  *  K  S  L  Q  N  G  P  K  S  *  T  S  L  V  V  I  S  H  H  G  S  W  L  L  R  L  F  C  S  R  A  *  G  R  G  P  R  I  S  L  E  N  A  R  D  E  L  L  L  N  H  R  Q  L  N  F  F  E  I  F  A  C  F  V  C  A  L  Y  Y  S  F  W  I  H  M  L  Y  I  Y  K  L  I  *  S  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48953" stop="48498"/>
                    <exon start="46734" stop="46525"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLHPHPPIPPRLFSPFFFLSVIAGHSTTISIMVEIEEASTGADEMSPLLSNPKTDPIPSTRTKSVKTKVPEIKVHLYKQGKGPIDEFTSSLGGFEQDQLEVRDILDKYGFKSVYAFKPETGRGVPIRFNPRNGRSILTYRDGSEIHIDGEPKDSLIQPITRILVGVAVITLLIVMVMKESPEWAKKLNITGGNIPPWVLAAAVILFTRIRKRTKDFFGKRP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 27 chains have been computed
$ 
$ memory statistics:
$ 14216 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2030 bytes was the average size of a spliced alignment
$ 12008 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2001 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 38 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-05 02:30:07
-->
