<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-05 08:40:39"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746405" ref_strand="+" ref_description="SGN-E746405 [GI|47105557]">
      <seq>tagaatacagaaccatcaatggcgtctccacgtgaagagaacgtgtacatggcgaagcttgctgagcaagctgaacgctatgaggagatggtagaattcatggagaaggtcgtcgcggccttgaacggtgaggaacttaccgtcgaggaacgcaaccttctctccgtcgcatacaaaaacgtgatcggagctaggagagcatcgtggcgtataatttcatcgatcgagcagaaagaggagagtcgtggtaacgaagatcacgttgcctccattaagaaatacagatctcagatcgagaatgagctgacttcgatctgtaacggcatcctcaagttgcttgattccaaactcattgggtcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctattacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtctacgtatttctcttgtatttggatgctctgatgaagctctcttatttcgtggaaatgaatatttattttcacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="441" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="495" r_length="441" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="618" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="735" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1425" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="1030" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1031" polyA_stop="1042"/>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E746405" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>976</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAA</genome_strand>
        <mrna_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATTGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747603" ref_strand="+" ref_description="SGN-E747603 [GI|15637115]">
      <seq>gaatacagaactatcaatggcgtctccacgtgaagagaacgtgtacatggcgaagtttgctgagcaagctgaacgatcctatgaggagatggtagaattcatggagaaggtcgtcttttccttgaacggtgaggaacttaccgtcgaggaacgcaaccttctctccgtcccatacgggggcctgatcggagctaggagagcatcgtggcgtataatttcatcgatcgagcagaaagaggagagtcgtggtaacgaagatcacgttgcctccattaagaaatacagatctcagatcgagaatgagctgacttcgatctgtaacggcatcctcaagttgcttgattccaaactcatcgggtcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctattacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="441" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="496" r_length="444" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="619" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="736" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1353" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="959" r_length="223" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="960" polyA_stop="979"/>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E747603" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTGAGCAAGCTGAACG---CTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTAC</genome_strand>
        <mrna_strand>AAGTTTGCTGAGCAAGCTGAACGATCCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCTTTTCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCCCATACGGGGGCCTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707097" ref_strand="+" ref_description="SGN-E707097 [FA32AC03]">
      <seq>cctaaacttactctctctaaaacccctctttctctctctagaatacagaaccatcaatggcgtctccacgtgaagagaacgtgtacatggcgaagcttgctgagcaagctgaacgctatgaggagatggtagaattcatggagaaggtcgtcgcggccttgaacggtgaggaacttaccgtcgaggaacgcaaccttctctccgtcgcatacaaaaacgtgatcggagctaggagagcatcgtggcgtataatttcatcgatcgagcagaaagaggagagtcgtggtaacgaagatcacgttgcctccattaagaaatacagatctcagatcgagaatgagctgacttcgatctgtaacggcatcctcaagttgcttgattccaaactcatcggttcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="441" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="533" r_length="441" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="656" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="773" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1296" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="939" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E707097" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTAC</genome_strand>
        <mrna_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGTTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737684" ref_strand="+" ref_description="SGN-E737684 [LC10DD08]">
      <seq>actctctctaaaacccctctttctctctctagaatacagaaccatcaatggcgtctccacgtgaagagaacgtgtacatggcgaagcttgctgagcaagctgaacgctatgaggagatggtagaattcatggagaaggtcgtcgcggccttgaacggtgaggaacttaccgtcgaggaacgcaaccttctctccgtcgcatacaaaaacgtgatcggagctaggagagcatcgtggcgtataatttcatcgatcgagcagaaagaggagagtcgtggtaacgaagatcacgttgcctccattaagaaatacagatctcagatcgagaatgagctgacttcgatctgtaacggcatcctcaagttgcttgattccaaactcatcggttcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaaatgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="441" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="524" r_length="441" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="647" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="764" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1273" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="907" r_length="143" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E737684" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATC</genome_strand>
        <mrna_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGTTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAAATGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708078" ref_strand="+" ref_description="SGN-E708078 [FA34DB11]">
      <seq>catatagaaccatcaatggcgtctccacgtgaagagaacgtgtacatggcgaagcttgctgagcaagctgaacgctatgaggagatggtagaattcatggagaaggtcgtcgcggccttgaacggtgaggaacttaccgtcgaggaacgcaaccttctctccgtcgcatacaaaaacgtgatcggagctaggagagcatcgtggcgtataatttcatcgatcgagcagaaagaggagagtcgtggtaacgaagatcacgttgcctccattaagaaatacagatctcagatcgagaatgagctgacttcgatctgtaacggcatcctcaagttgcttgattccaaactcatcggttcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaaatgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="441" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="492" r_length="441" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="615" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="732" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1270" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="872" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E708078" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTT</genome_strand>
        <mrna_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGTTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAAATGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708507" ref_strand="+" ref_description="SGN-E708507 [FA35DG12]">
      <seq>cagttccatcaatggcgtctccacgtgaagagaacgtgtacatggcgaagcttgctgagcaagctgaacgctatgaggagatggtagaattcatggagaaggtcgtcgcggccttgaacggtgaggaacttaccgtcgaggaacgcaaccttctctccgtcgcatacaaaaacgtgatcggagctaggagagcatcgtggcgtataatttcatcgatcgagcagaaagaggagagtcgtggtaacgaagatcacgttgcctccattaagaaatacagatctcagatcgagaatgagctgacttcgatctgtaacggcatcctcaagttgcttgattccaaactcatcggttcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="441" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="488" r_length="441" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="611" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="728" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1259" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="857" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E708507" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGT</genome_strand>
        <mrna_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGTTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700544" ref_strand="+" ref_description="SGN-E700544 [FA13BG01]">
      <seq>cttactctctctaaaacccctctttctctctctagaatacagaaccatcaatggcgtctccacgtgaagagaacgtgtacatggcgaagcttgctgagcaagctgaacgctatgaggagatggtagaattcatggagaaggtcgtcgcggccttgaacggtgaggaacttaccgtcgaggaacgcaaccttctctccgtcgcatacaaaaacgtgatcggagctaggagagcatcgtggcgtataatttcatcgatcgagcagaaagaggagagtcgtggtaacgaagatcacgttgcctccattaagaaatacagatctcagatcgagaatgagctgacttcgatctgtaacggcatcctcaagttgcttgattccaaactcatcggttcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttaaaattgacaacgaatgatgtaattttactcattgatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="441" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="527" r_length="441" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="650" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="767" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1249" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="886" r_length="119" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E700544" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAA</genome_strand>
        <mrna_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGTTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAAAATTGACAACGAATGATGTAATTTTACTCATTGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705490" ref_strand="+" ref_description="SGN-E705490 [FA27BB12]">
      <seq>cgcttaacccctctttctctctctagaatacagaaccatcactggcgtctccacgtgaagagaacgtgtacatggcgaagcttgctgagcaagctgaacgctatgaggagatggtagaattcatggagaaggtcgtcgcggccttgaacggtgaggaacttaccgtcgaggaacgcaaccttctctccgtcgcatacaaaaacgtgatcggagctaggagagcatcgtggcgtataatttcatcgatcgagcacaaagaggagagtcgtggtaacgaagatcacgttgcctccgttaagaaatacagatctcagatcgagaatgagctgacttcgatctgtaacggcatcctcaagttgcttgattccaaactcatcggttcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggcacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctaccacgatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgacaatcaagaaccatcacaagctgataatgagtactaacatcgtgagtgagacttctttgcttaaattgacaaccgatgatgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="441" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="518" r_length="441" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="641" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="758" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1232" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="859" r_length="101" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E705490" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAA</genome_strand>
        <mrna_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCACAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCGTTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGTTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGCACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACCACGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGACAATCAAGAACCATCACAAGCTGATAATGAGTACTAACATCGTGAGTGAGACTTCTTTGCTTA-AATTGACAACCGATGATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707356" ref_strand="+" ref_description="SGN-E707356 [FA32DB02]">
      <seq>cctataacccctctttctctctctagaatacagaaccatcaatggcgtctccacgtgaagagaacgtgtacatggcgaagcttgctgagcaagctgaacgctatgaggagatggtagaattcatggagaaggtcgtcgcggccttgaacggtgaggaacttaccgtcgaggaacgcaaccttctctccgtcgcatacaaaaacgtgatcggagctaggagagcatcgtggcgtataatttcatcgatcgagcagaaagaggagagtcgtggtaacgaagatcacgttgcctccattaagaaatacagatctcagatcgagaatgagctgacttcgatctgtaacggcatcctcaagttgcttgattccaaactcatcggttcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="441" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="518" r_length="441" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="641" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="758" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1200" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="828" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E707356" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACT</genome_strand>
        <mrna_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGTTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320945" ref_strand="+" ref_description="SGN-E320945 [cTOB-13-E24]">
      <seq>ttctctctctagaatacagaaccatcaatggcgtctccacgtgaagagaacgtgtacatggcgaagcttgctgagcaagctgaacgctatgaggagatggtagaattcatggagaaggtcgtcgcggccttgaacggtgaggaacttaccgtcgaggaacgcaaccttctctccgtcgcatacaaaaacgtgatcggagctaggagagcatcgtggcgtataatttcatcgatcgagcagaaagaggagagtcgtggtaacgaagatcacgttgcctccattaagaaatacagatctcagatcgagaatgagctgacttcgatctgtaacggcatcctcaagttgcttgattccaaactcatcgggtcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="441" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="504" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="627" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="958" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="660" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E320945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACC</genome_strand>
        <mrna_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319735" ref_strand="+" ref_description="SGN-E319735 [cTOB-12-C2]">
      <seq>tcaatggcgtctccacgtgaagagaacgtgtacatggcgaagcttgctgagcaagctgaacgctatgaggagatggtagaattcatggagaaggtcgtcgcggccttgaacggtgaggaacttaccgtcgaggaacgcaaccttctctccgtcgcatacaaaaacgtgatcggagctaggagagcatcgtggcgtataatttcatcgatcgagcagaaagaggagagtcgtggtaacgaagatcacgttgcctccattaagaaatacagatctcagatcgagaatgagctgacttcgatctgtaacggcatcctcaagttgcttgattccaaactcatcgggtcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="434" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="473" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E319735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTC</genome_strand>
        <mrna_strand>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302981" ref_strand="+" ref_description="SGN-E302981 [cLEW-26-G11]">
      <seq>cttgctgagcaagctgaacgctatgaggagatggtagaattcatggagaaggtcgacacggccttgaacggtgaggaacttaccgtcgaggaacgcaaccttctctccgtcgcatacaaaaacgtgatcggagctaggagagcatcgtggcgtataatttcatcgatcgagcagaaagaggagagtcgtggtaacgaagatcacgttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4" g_stop="213" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E302981" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4" e_stop="213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCC</genome_strand>
        <mrna_strand>CTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGACACGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251363" ref_strand="+" ref_description="SGN-E251363 [cLEG-23-D22]">
      <seq>ggagaaggtcgtcgcggccttgaacggtgaggaacttaccgtcgaggaacgcaaccttctctccgtcgcatacaaaaacgtgatcggagctaggagagcatcgtggcgtataatttcatcgatcgagcagaaagaggagagtcgtggtaacgaagatcacgttgcctccattaagaaatacagatctcagatcgagaatgagctgacttcgatctgtaacggcatcctcaagttgcttgattccaaactcatcgggtcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48" g_stop="441" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="517" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="935" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="527" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E251363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATG</genome_strand>
        <mrna_strand>GGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251359" ref_strand="+" ref_description="SGN-E251359 [cLEG-23-B22]">
      <seq>ggagaaggtcgtcgcggccttgaacggtgaggaacttaccgtcgaggaacgcaaccttctctgcgtcgcatacaaaaacgtgatcggagctaggagagcatcgtggcgtataatttcatcgatcgagcataaagaggagagtcgtggtaacgaagatcacgttgcctccattaagaaatacagatctcagatcgagaatgagctgacttcgatctgtgacggcatcctcaagttgcttgattccaaactcatcgggtcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtgcttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaagatatcggtaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48" g_stop="441" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="772" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="481" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E251359" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48" e_stop="441"/>
          <exon e_start="686" e_stop="772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTG</genome_strand>
        <mrna_strand>GGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTGCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCATAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTGACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTGCTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAA....................................................................................................................................................................................................................................................GATATCGGTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548331" ref_strand="+" ref_description="SGN-E548331 [TUS-60-D13](-)">
      <seq>tttcatcgatcgagcagaaagaggagagtcgtggtaacgaagatcacgttgcctccattaagaaatacagatctcagatcgagaatgagctgacttcgatctgtaacggcatcctcaagttgcttgattccaaactcatcgggtcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctattacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtctacgtatttctcttgtatttggatgctctgatgaagctctcttatttcgtggaaatgaatatttttttcacgaagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161" g_stop="441" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="404" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="521" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1425" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="815" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="818" polyA_stop="835"/>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E548331" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAA</genome_strand>
        <mrna_strand>TTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTT-TTTTCACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257103" ref_strand="+" ref_description="SGN-E257103 [cLEG-44-H10]">
      <seq>ggtaacgaagatcacgttgcctccattaagaaatacagatctcagatcgagaatgagctgacttcgatctgtaacggcatcctcaagttgcttgattccaaactcatcgggtcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="193" g_stop="441" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="372" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="489" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1150" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="509" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E257103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="193" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGAT</genome_strand>
        <mrna_strand>GGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279465" ref_strand="+" ref_description="SGN-E279465 [cLER-5-A5]">
      <seq>cacgttgcctccattaagaaatacagatctcagatcgagaatgagctgacttcgatctgtaacggcatcctcaagttgcttgattccaaactcatcgggtcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="205" g_stop="439" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E279465" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="205" e_stop="439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTC</genome_strand>
        <mrna_strand>CACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689984" ref_strand="+" ref_description="SGN-E689984 [LH_Ea02F06]">
      <seq>cctttaagatcgagaatgagctgacttcgatctgtaacggcctcttcaagttacttgattccaaactcatcgggtcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcagaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtttagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacctctttgcttaggattgataacccatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctactacctaaaggcgctgtttcttgccatttgatgttttcatcaaagattaccttttgtctacgtatttctcttgtatttggatgctctgatgaagctctcttatttcgtggaaatgaatatttatttttacgaagcaagtagcactttatatttccctattctcaaagaagtagggcattgttggtttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="230" g_stop="441" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="335" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="452" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1471" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="793" r_length="341" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="803" polyA_stop="814"/>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E689984" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="230" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAAGCAAGTAGTACTTTTTATTTCCTTTTTCTCGAAGAAGTAGAGCATT</genome_strand>
        <mrna_strand>CCTTTAAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCCTCTTCAAGTTACTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAGAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTTTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACCTCTTTGCTTAGGATTGATAACCCATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTACTACCTAAAGGCGCTGTTTCTTGCCATTTGATGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTTACGAAGCAAGTAGCACTTTATATTTCCCTATTCTCAAAGAAGTAGGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693824" ref_strand="+" ref_description="SGN-E693824 [LH_Ea02F06](-)">
      <seq>ctcagatcgagaatgagctgacttcgatctgtaacggcatcctcaagttacttgattccaaactcatcgggtcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtttagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacctctttgcttaggattgataacccatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctactacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtctacgtatttctcttgtatttggatgctctgatgaagctctcttatttcgtggaaatgaatatttatttttacgaagcaagtagcactttatatttccctagtctcaaagaagtagggcattgttggttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="233" g_stop="441" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="332" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="449" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1479" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="798" r_length="349" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="799" polyA_stop="815"/>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E693824" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="233" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAAGCAAGTAGTACTTTTTATTTCCTTTTTCTCGAAGAAGTAGAGCATTGTGGATTG</genome_strand>
        <mrna_strand>CTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTACTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTTTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACCTCTTTGCTTAGGATTGATAACCCATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTACTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTTACGAAGCAAGTAGCACTTTATATTTCCCTAGTCTCAAAGAAGTAGGGCATTGTTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262758" ref_strand="+" ref_description="SGN-E262758 [cLEG-63-P11]">
      <seq>gagaatgagctgacttcgatctgtaacggcatcctcaagttgcttgattccaaactcatcgggtcagctgctaccggagactccaaggttttctatttgaaaatgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgngagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctattacctaaaaggcgctgtttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="241" g_stop="441" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="324" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="441" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1314" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="626" r_length="185" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E262758" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="241" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCT-AAAGGCGCTGTTTCTT</genome_strand>
        <mrna_strand>GAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGNGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAAGGCGCTGTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696876" ref_strand="+" ref_description="SGN-E696876 [LH_Ea10E10](-)">
      <seq>tcaagttacttgattccaaactcatcgggtcagctgctaccggagactccaaggttttttatttgaaaatgaagggagattactcccggtacttggctgagttcaaacccggacccgagagaaaagaagctgcagagaatactctttcggcctacaagtttgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtttagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgaccccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataccctcactttgtggccctcggatatgcaggatgatggaactgatgagatcaaagacccatcaaaagctgataatgagtagtaacatcgtgagtgaaccctctttgcttaggattgataacccatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctactccctaaaggcgctgtttcttgccatttgttgttttcatcaaagattcccttttgtttacgtatttctcttgtatggggatgctctgatgaagctctcttatttcgtggaaataaatatttatttttccgaggcaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="275" g_stop="441" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="290" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="407" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1425" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="702" r_length="295" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="705" polyA_stop="732"/>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E696876" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="275" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAA</genome_strand>
        <mrna_strand>TCAAGTTACTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTTTATTTGAAAATGAAGGGAGATTACTCCCGGTACTTGGCTGAGTTCAAACCCGGACCCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTTTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTTTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACCCCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATACCCTCACTTTGTGGCCCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGACCCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAACCCTCTTTGCTTAGGATTGATAACCCATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTACTCCCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTCCCTTTTGTTTACGTATTTCTCTTGTATGGGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATAAATATTTATTTTTCCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264887" ref_strand="+" ref_description="SGN-E264887 [cLEG-71-J7]">
      <seq>agttgcttgattccaaactcatcgggtcagctgctaccggagactgcagggttttctatttgaaaatgaacggagattactaccggtacttggctgaggtcaaaaccggaaccgagatagaggaagctgcagagaatactctttcgggctacaaggctgctcaggatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="278" g_stop="441" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="691" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="170" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E264887" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>170</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="278" e_stop="441"/>
          <exon e_start="686" e_stop="691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATC</genome_strand>
        <mrna_strand>AGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTGCAGGGTTTTCTATTTGAAAATGAACGGAGATTACTACCGGTACTTGGCTGAGGTCAAAACCGGAACCGAGATAGAGGAAGCTGCAGAGAATACTCTTTCGGGCTACAAGGCTGCTCAG....................................................................................................................................................................................................................................................GATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689898" ref_strand="+" ref_description="SGN-E689898 [LH_Ea02B16]">
      <seq>tagctgctaccggagactccaaggttttctatttgaacctgaagggagattactaccggtacttggctgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtttagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaacaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacctctttgcttaggattgataacccatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctactacctaaaggcgctgtttcttgccatttgatgttttcatcaaagattaccttttgtctacgtatttctcttgtatttggatgctctgatgaagctctcttatttcgtggaaatgaatatttatttttacgcacaaagaacggggaaatgaatatttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="6" stop="1732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="305" g_stop="441" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="260" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="377" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1425" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="672" r_length="295" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E689898" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="305" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAA</genome_strand>
        <mrna_strand>TAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAACCTGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTTTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAACAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACCTCTTTGCTTAGGATTGATAACCCATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTACTACCTAAAGGCGCTGTTTCTTGCCATTTGATGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTTACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689902" ref_strand="+" ref_description="SGN-E689902 [LH_Ea02B20]">
      <seq>ccctataaagctaccggagactccaaggttttctatttgaactttaaaggagattantannggtanttggntgagttaaaaaggggaattgagagaaaagaaggtgtagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccgatccgattggggttagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacctctttgcttaggattgataacccatgatggaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctactacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtctacgtatttctcttgtatttggatgctctgatgaagctctcttatttcgtggaaatgaatatttatttttnctcacttattacgtggaaatgaatattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="10" stop="1719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="310" g_stop="441" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="141" r_length="132" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="264" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="381" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1425" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="676" r_length="295" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E689902" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="310" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAA</genome_strand>
        <mrna_strand>GCTACCGGAGACTCCAAGGTTTTCTATTTGAACTTTAAAGGAGATTANTANNGGTANTTGGNTGAGTTAAAAAGGGGAATTGAGAGAAAAGAAGGTGTAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCGATCCGATTGGGGTTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACCTCTTTGCTTAGGATTGATAACCCATGATGGAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTACTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTTNCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353203" ref_strand="+" ref_description="SGN-E353203 [cTOS-14-O14]">
      <seq>tgagttcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctattacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="72" stop="1652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="372" g_stop="441" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="193" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="310" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1353" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="533" r_length="223" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="549"/>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E353203" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="372" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTAC</genome_strand>
        <mrna_strand>TGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288572" ref_strand="+" ref_description="SGN-E288572 [cLES-8-H7]">
      <seq>tcaaaaccggaaccgagagaaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctattacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtctacgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="77" stop="1656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="377" g_stop="441" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="188" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="305" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1357" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="532" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E288572" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="377" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTAT</genome_strand>
        <mrna_strand>TCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351860" ref_strand="+" ref_description="SGN-E351860 [cTOS-8-K2]">
      <seq>aaaagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctattacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtctacgtatttctcttgtatttggatgctctgatgaagctctcttatttcgtggaaatgaatatttattttcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="96" stop="1723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="396" g_stop="441" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="169" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="286" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1423" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="579" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E351860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="396" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACG</genome_strand>
        <mrna_strand>AAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351300" ref_strand="+" ref_description="SGN-E351300 [cTOS-6-H18]">
      <seq>aagaagctgcagagaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctattacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtctacgtatttctcttgtatttggatgctctgatgaagctctcttatttcgtggaaatgaatatttattttcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="98" stop="1723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="398" g_stop="441" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="167" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="284" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1423" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="577" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E351300" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="398" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACG</genome_strand>
        <mrna_strand>AAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351192" ref_strand="+" ref_description="SGN-E351192 [cTOS-6-C4]">
      <seq>agaatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctattacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtctacgtatttctcttgtatttggatgctctgatgaagctctcttatttcgtggaaatgaatatttattttcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="110" stop="1723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="410" g_stop="441" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="155" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="272" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1423" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="565" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E351192" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="410" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACG</genome_strand>
        <mrna_strand>AGAATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349683" ref_strand="+" ref_description="SGN-E349683 [cTOS-3-B1]">
      <seq>aatactctttcggcctacaagtctgctcaggatatcgctaatggcgaattggccccaacacatccaatccgattgggtctagctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctattacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtctacgtatttctcttgtatttggatgctctgatgaagctctcttatttcgtggaaatgaatatttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="112" stop="1719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="412" g_stop="441" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="686" g_stop="808" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="153" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="270" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1131" g_stop="1419" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="559" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E349683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="412" e_stop="441"/>
          <exon e_start="686" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGAACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCATTAGAATTCGTCGTCCAAGGGAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCTTTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTT</genome_strand>
        <mrna_strand>AATACTCTTTCGGCCTACAAGTCTGCTCAG....................................................................................................................................................................................................................................................GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283627" ref_strand="-" ref_description="SGN-E283627 [cLES-1-M17]">
      <seq>gctctcaatttctcagtgttttactatgagatattgaattctcctgatcgtgcttgtaatctcgccaaacaggcctttgatgaggcaattgcggagcttgacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctattacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtctacgtatttctcttgtatttggatgctctgatgaagctctcttatttcgtggaaatgaatatttattttcacgaagcaagtagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="437" stop="1737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="737" g_stop="808" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="189" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1131" g_stop="1437" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="496" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E283627" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283627" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="737" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAAGCAAGTAGTACT</genome_strand>
        <mrna_strand>GCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG.....................................................................................................................GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAAGCAAGTAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219209" ref_strand="+" ref_description="SGN-E219209 [cLEL-11-F17](-)">
      <seq>gaattctcctgatcgtgctgtaatctcgccaaacaggcctttatgaggcaattgcggagcttgacaccctggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaaaacctattacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtctacgtatttctcttgtatttggatgctctgatgaagctctcttatttcgtggaaatgaatatttattttcccgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="472" stop="1729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="772" g_stop="808" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="151" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1131" g_stop="1425" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="446" r_length="295" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="447" polyA_stop="478"/>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E219209" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="772" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAA</genome_strand>
        <mrna_strand>GAATTCTCCTGATCGTGC-TGTAATCTCGCCAAACAG.....................................................................................................................GCCTTT-ATGAGGCAATTGCGGAGCTTGACACCCT-GGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAAAACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577975" ref_strand="-" ref_description="SGN-E577975 [LE08CC08]">
      <seq>cctgatcgtgcttgtaatctcgccacacaggcctttgatgaggcaatttcggagcttcacaccctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcagaatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctattacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtctacgtatttctcttgtatttggatgctctgatgaagctctcttatttcgtggaaatgaatatttattttcacgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="479" stop="1729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="779" g_stop="808" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="926" g_stop="1042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="147" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1131" g_stop="1425" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="442" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E577975" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577975" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="779" e_stop="808"/>
          <exon e_start="926" e_stop="1042"/>
          <exon e_start="1131" e_stop="1425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGATTTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATAGGCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAA</genome_strand>
        <mrna_strand>CCTGATCGTGCTTGTAATCTCGCCACACAG.....................................................................................................................GCCTTTGATGAGGCAATTTCGGAGCTTCACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................AATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371453" ref_strand="+" ref_description="SGN-E371453 [TUS-29-L18](-)">
      <seq>cctgggagaggagtcctacaaggatagcactttgattatgcaacttttgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctattacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtttacgtatttctcttgtatttggatgctctgatgaagctctcttatttcgtggaaatgaatatttattttcacgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="658" stop="1729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="958" g_stop="1042" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1425" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="380" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="397"/>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E371453" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="958" e_stop="1042"/>
          <exon e_start="1131" e_stop="1425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAA</genome_strand>
        <mrna_strand>CCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTTTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTTTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280376" ref_strand="+" ref_description="SGN-E280376 [cLER-1-O10]">
      <seq>ctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctattacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtctacgtatttctcttgtatttggatgctctgatgaagctctcttatttcgtggaaatgaatatttattttcacgaanaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="659" stop="1729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="959" g_stop="1042" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1425" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="379" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="397"/>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E280376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="959" e_stop="1042"/>
          <exon e_start="1131" e_stop="1425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAA</genome_strand>
        <mrna_strand>CTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371454" ref_strand="+" ref_description="SGN-E371454 [TUS-29-L18]">
      <seq>ctgggagaggagtcctacaaggatagcactttgattatgcaacttctgcgtgataacctcactttgtggacctcggatatgcaggatgatggaactgatgagatcaaagaaccatcaaaagctgataatgagtagtaacatcgtgagtgaaacttctttgcttagaattgacaaccgatgatgtaattttactcattgatcaaaattggctgtttgtagtccttatcctgtgatttgtaatacctattacctaaaggcgctgtttcttgccatttgttgttttcatcaaagattaccttttgtctacgtatttctcttgtatttggatgctctgatgaagctctcttatttcgtggaaatgaatatttattttcacgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="659" stop="1729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="959" g_stop="1042" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1425" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="379" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="397"/>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E371454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="959" e_stop="1042"/>
          <exon e_start="1131" e_stop="1425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAGGTAAATCCTTGTGTTCTTTTGTTAATTTGATTGTTTTGCTTATTAGATTGTTTGGCTAATCCATCTCTTGTTGACTTTACTTCTTCAGGATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAA</genome_strand>
        <mrna_strand>CTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG........................................................................................GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543430" ref_strand="+" ref_description="SGN-E543430 [TUS-65-D22](-)">
      <seq>gattcatttaggagttcattaactcctagattggtacaagctctagtgtgccttcaagattggcttcggagtgagccacaacccataagtattgaggaagattagattttcttgagcaacttgaagaagattttgctaaacttggaaaagaactttgcattgatgacatgtaaaattggaggaaggaagatttcatcatgcatcgatcacttgtttggaatcactatgaaaaacttgaagaaaatgaagatggatcgtggaaggtaaaatgtattcattgtggctgtgtttattaccattgacgcaatactgggactgcctccttaagaaagggttgtttggaaaacaggaaccagaatcgtcaacttttgaggattgatgactagttattattatgtttagacttaattttcaggttgtgttactgctgtctggcgtctactattttaaatctgtgtctgttactgtgtgaagtgtggagtgtggacagtggcagcctggcaggatggaattgtgttgaattttttacgtccgtaatgttgcaacttccatgcttgtagcttgtactgttggctattattatcttacagtttttggctgctttattatgttattttattatgagatttcataaaaaaaaaaaaaaaaaatacaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="-" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="31219" stop="29813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30919" g_stop="30790" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30789" i_stop="30690" i_length="100">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30689" g_stop="30630" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="189" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30629" i_stop="30553" i_length="77">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30552" g_stop="30113" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="618" r_length="429" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="631" polyA_stop="650"/>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="-" ref_id="SGN-E543430" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30919" e_stop="30790"/>
          <exon e_start="30689" e_stop="30630"/>
          <exon e_start="30552" e_stop="30113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCATTTAGGAGTTCATTAACTCCTAGATTGGTACAAGCTCTAGTGTACCTTCAAGATTGGCTTCGGAGTGAGCCATAACCCATAAGTATTGAGGAAGATTTAGATTTTCTTGAGCAACTTGAAGAAGGTAAGAAAAGAATCTCATTGATGTTAAATTGTGAATTGTTTATTTAATACTTTTATTGTTTAAGTCTTGAGCCTTGACTTGTTATCGTATTTCTTTTTAGATTTTGCTAAACTTGGAAAAGAACTTTGCATTGATGACATGTAAAATTGGAGGAAGGAAGGTATATACATGTGCTATCTTGTCTTTGTATCTGATTTATTATTGATCTAATACTTTCTCTGTTTCTTTGCTAATCAGATTTCATCATGCATCGATCACTTGTTTGGAATCACTATGAAAAACTTGAAGAAAATGAAGATGGATCGTGGAAGGTAAAATGTATTCATTGTGGCTGTGTTTATTACCATTCACGCAATACTGAGACTGCCTCCTTAAGAAGGCATGTTAAGGGTTATTTGGAAAACAGAAACCAAAATCGTCAACTTTTGAGGATTGATGACTAGTTATTATTATGTTTAGACTTAATTTTCAGGTTGTGTTACTGCTGTCTGGTGTCTGCTATTTTAAATTTGTCTGTGTGTGACTGTGTGAAGTGTGGAGTGTGAACTGTGGCAGCCTGGTAGGCTGGAATTGTGTTGAATTTTTTACTTCTGTAATGTTGCAACTTGCATGCTTGTAGCTTGTACTGTTGGCTATTATTATGTTACAGTTTTTGACTGCTTTATTATGTTATTTTA</genome_strand>
        <mrna_strand>GATTCATTTAGGAGTTCATTAACTCCTAGATTGGTACAAGCTCTAGTGTGCCTTCAAGATTGGCTTCGGAGTGAGCCACAACCCATAAGTATTGAGGAAGA-TTAGATTTTCTTGAGCAACTTGAAGAAG....................................................................................................ATTTTGCTAAACTTGGAAAAGAACTTTGCATTGATGACATGTAAAATTGGAGGAAGGAAG.............................................................................ATTTCATCATGCATCGATCACTTGTTTGGAATCACTATGAAAAACTTGAAGAAAATGAAGATGGATCGTGGAAGGTAAAATGTATTCATTGTGGCTGTGTTTATTACCATTGACGCAATACTGGGACTGCCTCCTT---AA-G-A----AAGGGTTGTTTGGAAAACAGGAACCAGAATCGTCAACTTTTGAGGATTGATGACTAGTTATTATTATGTTTAGACTTAATTTTCAGGTTGTGTTACTGCTGTCTGGCGTCTACTATTTTAAATCTG--TGTCTGTTACTGTGTGAAGTGTGGAGTGTGGACAGTGGCAGCCTGGCAGGATGGAATTGTGTTGAATTTTTTACGTCCGTAATGTTGCAACTTCCATGCTTGTAGCTTGTACTGTTGGCTATTATTATCTTACAGTTTTTGGCTGCTTTATTATGTTATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215035" ref_strand="+" ref_description="SGN-E215035 [cLEC-78-O5]">
      <seq>gaaaaaatttcaagaatgttgtgaagatgaaaatcttgctaaaaagtctttatgcttggatgttcctacaaggtggaattccacctacatgatgttgagcagggttattgaatatgaaggggcaattgtagagtacgccgatcgtgcaattggcttgacactatatcttaagtttgttgataaaaactctacagctacacttttgagtagtgattgtgagggtgtaaagagaattataaaatttcttgaaatgttttttagtcttactttgaagatatctggttcacgatatgttacatccaatcttcatttttttgaattttttcaagttggtgtttacttgaatcaattgatatcaaatgaagatcaagttttgtctaaaatggaagaaaatatgaaggagaatggcaaatattagggtgatgctgaaaaaatgaataagatggttttcataccatgtgttttggatcctcgtcacaaatttagtactcttggctttgcacttaagaagatgtttggagaaaaaggggctgctatagaaaatggtgtgggaacgtacatggaagctttgtttaatgagtatacaaaccccatttcaaatgataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="-" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="32136" stop="30927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31836" g_stop="31227" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="-" ref_id="SGN-E215035" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31836" e_stop="31227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATATTTCAAGAATGTTGTGAAGATGAAAATCTTGTTAAAAAGTCTTTATGCTTGGATGTTCCTAGAAGGTGGAATTCCATCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACGCCGATCGTGATATTGGCTTGGCACTATA-CTTAAGTTTGTTGATAAAAATTCTACAGGTACACTTTTGAGTAGTGATTGGGAGGGCGTAAAGAGAACTACAAAATTTCTTGAAATGTTTTTTAATCTTACTTTGAAGATATATGGTTCACGATATGTTACATCAAATCTTCATTTTCTTGAAATTTATCAAGTTGGTGTTTACTTGAATCAATTGATATCAAATGAAGATCAAGTTTTGGCTAAAATGACAGAAAATATGAAGGAGAAATTTGACAAATATTTGGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACTATGTGTTTTGGATCCTCATCACAAATTTAGTACTCTTGGCTTTGCAATTAAGAAGATGTTTGGAGAAAAAGGGGATGCTATAGAAAATGGTGCGCGAACGTACATGGAAGCTTTGTTTAATGAGTATACAAACCCCATTTCAAATGATAAA</genome_strand>
        <mrna_strand>GAAAAAATTTCAAGAATGTTGTGAAGATGAAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGGTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACGCCGATCGTGCAATTGGCTTGACACTATATCTTAAGTTTGTTGATAAAAACTCTACAGCTACACTTTTGAGTAGTGATTGTGAGGGTGTAAAGAGAATTATAAAATTTCTTGAAATGTTTTTTAGTCTTACTTTGAAGATATCTGGTTCACGATATGTTACATCCAATCTTCATTTTTTTGAATTTTTTCAAGTTGGTGTTTACTTGAATCAATTGATATCAAATGAAGATCAAGTTTTGTCTAAAATGGAAGAAAATATGAAGGAG-AA--TGGCAAATA-TTAGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGGAGAAAAAGGGGCTGCTATAGAAAATGGTGTGGGAACGTACATGGAAGCTTTGTTTAATGAGTATACAAACCCCATTTCAAATGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347322" ref_strand="+" ref_description="SGN-E347322 [cTOF-33-O19]">
      <seq>agaagcatgtgtctattgaacgagttaggcaagcagtgagatacatcaggcaatctcctgctaggtcgaaaaaatttcaagaatgttgtgaagatgaaaatcttgctaaaaagtctttatgcttggatgttcctacaaggtggaattccacctacatgatgttgagcagggttattgaatatgaaggggcaattgtagagtacgccgatcgtgcaattggcttgacactatatcttaagtttgttgataaaaactctacagctacacttttgagtagtgattgtgagggtgtaaagagaattataaaatttcttgaaatgttttttagtcttactttgaagatatctggttcacgatatgttacatccaatcttcatttttttgaattttttcaagttggtgtttacttgaatcaattgatatcaaatgaagatcaagttttgtctaaaatggaagaaaatatgaaggagaatggcaaatattacggtgatgctgaaaaaatgaataagatggttttcataccatgtgttttggatcctcgtcacaaatttagtactcttggctttgcacttaagaagatgtttggagaaaaaggggctgctatagaaaatggtgtgggaacgtacatggaagccttgtttaatgagtatacaaaccccatttcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="-" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="32197" stop="30933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31905" g_stop="31233" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="-" ref_id="SGN-E347322" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31905" e_stop="31233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCAAATGTGTCTATTGAACGAGTTAGGCAAGCAGTGAGATACATCAGGCAATCTCCTGCTAGGTGGAAAATATTTCAAGAATGTTGTGAAGATGAAAATCTTGTTAAAAAGTCTTTATGCTTGGATGTTCCTAGAAGGTGGAATTCCATCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACGCCGATCGTGATATTGGCTTGGCACTATA-CTTAAGTTTGTTGATAAAAATTCTACAGGTACACTTTTGAGTAGTGATTGGGAGGGCGTAAAGAGAACTACAAAATTTCTTGAAATGTTTTTTAATCTTACTTTGAAGATATATGGTTCACGATATGTTACATCAAATCTTCATTTTCTTGAAATTTATCAAGTTGGTGTTTACTTGAATCAATTGATATCAAATGAAGATCAAGTTTTGGCTAAAATGACAGAAAATATGAAGGAGAAATTTGACAAATATTTGGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACTATGTGTTTTGGATCCTCATCACAAATTTAGTACTCTTGGCTTTGCAATTAAGAAGATGTTTGGAGAAAAAGGGGATGCTATAGAAAATGGTGCGCGAACGTACATGGAAGCTTTGTTTAATGAGTATACAAACCCCATTTCAAAT</genome_strand>
        <mrna_strand>AGAAGC--ATGTGTCTATTGAACGAGTTAGGCAAGCAGTGAGATACATCAGGCAATCTCCTGCTAGGTCGAAAAAATTTCAAGAATGTTGTGAAGATGAAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGGTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACGCCGATCGTGCAATTGGCTTGACACTATATCTTAAGTTTGTTGATAAAAACTCTACAGCTACACTTTTGAGTAGTGATTGTGAGGGTGTAAAGAGAATTATAAAATTTCTTGAAATGTTTTTTAGTCTTACTTTGAAGATATCTGGTTCACGATATGTTACATCCAATCTTCATTTTTTTGAATTTTTTCAAGTTGGTGTTTACTTGAATCAATTGATATCAAATGAAGATCAAGTTTTGTCTAAAATGGAAGAAAATATGAAGGAG-AA--TGGCAAATA-TTACGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGGAGAAAAAGGGGCTGCTATAGAAAATGGTGTGGGAACGTACATGGAAGCCTTGTTTAATGAGTATACAAACCCCATTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315065" ref_strand="+" ref_description="SGN-E315065 [cTOB-4-G18]">
      <seq>tttttatggagagagtccaaagcaatgggcaatggtctttattttgtccaagtgaggctcctggattggcagattgctggggtgatgattttgagaagctgtattcgaagtatgaaagagagggtaaggctaagaaggttgtgcaagcacaaaatctctggtttgagatcttgaagtctcagatagaaactgggaccccatacatgctatataaggatacttgtaacagaaaaagcaaccagcagaatcttggcacaatcaagtcttctaacttgtgtactgaaattattgaatacacaagtcctactgaaactgctgtgtgcaatcttgcctcaattgctcttccacgatatgttagagagaaggaggttcctagtgaatcacaaccatctaagcttgttgggagcagaggcgctaaaaaccggtactttgattttgacaaactggcagaggtcactgcattggtgactacaaacctgaacaaaattattgatgtcaactactaccctgttgaaactgcaaaaaggtctaatttacgacatagacctattggacttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="42316" stop="43863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42616" g_stop="42737" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42738" i_stop="42846" i_length="109">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42847" g_stop="42939" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="215" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42940" i_stop="43027" i_length="88">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43028" g_stop="43177" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="365" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43178" i_stop="43264" i_length="87">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43265" g_stop="43351" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="452" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43352" i_stop="43454" i_length="103">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43455" g_stop="43563" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="561" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E315065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42616" e_stop="42737"/>
          <exon e_start="42847" e_stop="42939"/>
          <exon e_start="43028" e_stop="43177"/>
          <exon e_start="43265" e_stop="43351"/>
          <exon e_start="43455" e_stop="43563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATGGAGAGAGTCCAAAGCAATGGGCAATGGTCTTTATTTTGTCCAAGTGAGGCTCCTGGATTGGCAGATTGCTGGGGTGATGATTTTGAGAAGCTGTATTCGAAGTATGAAAGAGAGGTAAAAGCAAGTCAACTATTGTGCTTAATTGCTTGCCGAGCTTGGAATCCTTAGATTACTTGATGTTTGTCAGCATATGATATATAATGATCCCATTTTGTCAATTCAGGGTAAGGCTAAGAAGGTTGTGCAAGCACAAAATCTCTGGTTTGAGATCTTGAAGTCTCAGATAGAAACTGGGACCCCATACATGCTATATAAGGTGACTTTTATATGGTTTATCTTGTTATTTTTGTTATTTGGATGCATTGTTCTTTCTTTTTAATCCTTTCTTCTGTTTGTTATCATAGGATACTTGTAACAGAAAAAGCAACCAGCAGAATCTTGGCACAATCAAGTCTTCTAACTTGTGTACTGAAATTATTGAATACACAAGTCCTACTGAAACTGCTGTGTGCAATCTTGCCTCAATTGCTCTTCCACGATATGTTAGAGAGAAGGTAGTTACAAATGCCATACACTTGAAAATATTGCTTGGTTTTAAGTTCTTTGTCCTGTTTTTAAGTACCTTTTTTTATATCTTGTAGGAGGTTCCTAGTGAATCACAACCATCTAAGCTTGTTGGGAGCAGAGGCGCTAAAAACCGGTACTTTGATTTTGACAAACTGGCAGAGGTTAGATTTTGTTCTGTCAAATTGGCCTTGTCAACTTCTGATGTTTCTTAGTTATTTATTTTGGATATCTATCTTACTGTGTTGTATTTTTCATGTGAGACAGGTCACTGCATTGGTGACTACAAACCTGAACAAAATTATTGATGTCAACTACTACCCTGTTGAAACTGCAAAAAGGTCTAATTTACGACATAGACCTATTGGACTTGGGG</genome_strand>
        <mrna_strand>TTTTTATGGAGAGAGTCCAAAGCAATGGGCAATGGTCTTTATTTTGTCCAAGTGAGGCTCCTGGATTGGCAGATTGCTGGGGTGATGATTTTGAGAAGCTGTATTCGAAGTATGAAAGAGAG.............................................................................................................GGTAAGGCTAAGAAGGTTGTGCAAGCACAAAATCTCTGGTTTGAGATCTTGAAGTCTCAGATAGAAACTGGGACCCCATACATGCTATATAAG........................................................................................GATACTTGTAACAGAAAAAGCAACCAGCAGAATCTTGGCACAATCAAGTCTTCTAACTTGTGTACTGAAATTATTGAATACACAAGTCCTACTGAAACTGCTGTGTGCAATCTTGCCTCAATTGCTCTTCCACGATATGTTAGAGAGAAG.......................................................................................GAGGTTCCTAGTGAATCACAACCATCTAAGCTTGTTGGGAGCAGAGGCGCTAAAAACCGGTACTTTGATTTTGACAAACTGGCAGAG.......................................................................................................GTCACTGCATTGGTGACTACAAACCTGAACAAAATTATTGATGTCAACTACTACCCTGTTGAAACTGCAAAAAGGTCTAATTTACGACATAGACCTATTGGACTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339986" ref_strand="+" ref_description="SGN-E339986 [cTOF-3-I11]">
      <seq>gaaggcccatatgagacatatgcaggaagtccagtaagcaagggtattgtccagccagacatgtggggagtaacaccctcagatcgatgggattggggtattctccgtgaaatgattgcaaaagatggtgtaagaaactcacttcttgtagctccaatgccaactgcttcaactagccaaattcttggaaacaatgaatgctttgaaccatacacatccaatatctacagcagaagagttctaagtggtgaatttgttgtggtgaacaagcatcttcttcatgacttaactgagatgggtctttggaatcctaccctcaagaataggataatttatgatgatggttctgtgcagaaaatccctgaagttccaaatgatcttaaactcatatacaagactgtttgggagatcaagcaacggaacttggttgatatggctgtagaccgtggatgctacattgatcaaagccagagtctcaacatccatatggaccaacccaattttggaaagcttacatccctgcattttcatacttggtccaggggtttaaaaacaggaatgtactatctaagatcacgcgcagcagcagatgcaatcaagttcacagttgatacttccatcctgaaggaaaaaccagtgactccagttgatgaagaaactaaaatggcccagatggtgtgttctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="43475" stop="45470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43775" g_stop="43816" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43817" i_stop="44114" i_length="298">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44115" g_stop="44317" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="245" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44318" i_stop="44403" i_length="86">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44404" g_stop="44553" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="395" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44554" i_stop="44637" i_length="84">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44638" g_stop="44785" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="543" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44786" i_stop="44941" i_length="156">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44942" g_stop="45025" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="627" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45026" i_stop="45110" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45111" g_stop="45170" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="687" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E339986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43775" e_stop="43816"/>
          <exon e_start="44115" e_stop="44317"/>
          <exon e_start="44404" e_stop="44553"/>
          <exon e_start="44638" e_stop="44785"/>
          <exon e_start="44942" e_stop="45025"/>
          <exon e_start="45111" e_stop="45170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCCCATATGAGACATATGCAGGAAGTCCAGTAAGCAAGGTATATTTGTAGCTTTTGCTTTAGTTGATGATTTGCTTTGTGGATTGCTTGGTTGATTGTCCAGGACTTCTGAAATAAGCTAGGGTTTAATCTGTGCCCTTCTTGATAAAGAATTGTGATTTTCTGTTAAGTGCGAAGATGATATCCAAGAAAAGACAATTAAAAATGTGCCAAAAGTAGAACCTGATATTATGGGGGCAAAAACCTGATGATTTGTCAGATGTGTGTTTGATTCACTATTGCCTATTTCTTTTTTATTTCACATTGTATTTTGTTAAGATTAGACTTTTCTGTTCAGGGTATTGTCCAGCCAGACATGTGGGGAGTAACACCCTCAGATCGATGGGATTGGGGTATTCTCCGTGAAATGATTGCAAAAGATGGTGTAAGAAACTCACTTCTTGTAGCTCCAATGCCAACTGCTTCAACTAGCCAAATTCTTGGAAACAATGAATGCTTTGAACCATACACATCCAATATCTACAGCAGAAGAGTTCTAAGGTTACTTTTGCTGCTTGTCCTTTAGCTCAATGCTAATAGAGTTAATTTTGCTGTCTTCAGATTTTAACTATGTATATTCTTTTCAGTGGTGAATTTGTTGTGGTGAACAAGCATCTTCTTCATGACTTAACTGAGATGGGTCTTTGGAATCCTACCCTCAAGAATAGGATAATTTATGATGATGGTTCTGTGCAGAAAATCCCTGAAGTTCCAAATGATCTTAAACTCATATACAAGTATGGACTTCTTTAATTGTTTTGGTTTGTTTGTCGTGTTCATTTTACTTCAAATTCCATGCTTATACTACCTAATGATGTCAGGACTGTTTGGGAGATCAAGCAACGGAACTTGGTTGATATGGCTGTAGACCGTGGATGCTACATTGATCAAAGCCAGAGTCTCAACATCCATATGGACCAACCCAATTTTGGAAAGCTTACATCCCTGCATTTTCATACTTGGTCCAGGGTATGCTTACCATTTCACATAACAGTTTGTTGTTACAATTATATGATTATTGTGATCTATCATTTCATTTCTACTAGTTTGGATATGCTCTTGCTTGAAATTCATGTGTGAAGATGGTTTGTACATGTCTTTGAATTTCAAGCTTGTTACTGGCAGGGTTTAAAAACAGGAATGTACTATCTAAGATCACGCGCAGCAGCAGATGCAATCAAGTTCACAGTTGATACTTCCATCCTGAAGGTAGTAAACCATTACATCTTTTACTCTCTCATCATAAACTCAATATGTTCCATCGTTACAGAACGCGTTTTGAACTTGAATGCAGGAAAAACCAGTGACTCCAGTTGATGAAGAAACTAAAATGGCCCAGATGGTGTGTTCTTTG</genome_strand>
        <mrna_strand>GAAGGCCCATATGAGACATATGCAGGAAGTCCAGTAAGCAAG..........................................................................................................................................................................................................................................................................................................GGTATTGTCCAGCCAGACATGTGGGGAGTAACACCCTCAGATCGATGGGATTGGGGTATTCTCCGTGAAATGATTGCAAAAGATGGTGTAAGAAACTCACTTCTTGTAGCTCCAATGCCAACTGCTTCAACTAGCCAAATTCTTGGAAACAATGAATGCTTTGAACCATACACATCCAATATCTACAGCAGAAGAGTTCTAAG......................................................................................TGGTGAATTTGTTGTGGTGAACAAGCATCTTCTTCATGACTTAACTGAGATGGGTCTTTGGAATCCTACCCTCAAGAATAGGATAATTTATGATGATGGTTCTGTGCAGAAAATCCCTGAAGTTCCAAATGATCTTAAACTCATATACAA....................................................................................GACTGTTTGGGAGATCAAGCAACGGAACTTGGTTGATATGGCTGTAGACCGTGGATGCTACATTGATCAAAGCCAGAGTCTCAACATCCATATGGACCAACCCAATTTTGGAAAGCTTACATCCCTGCATTTTCATACTTGGTCCAGG............................................................................................................................................................GGTTTAAAAACAGGAATGTACTATCTAAGATCACGCGCAGCAGCAGATGCAATCAAGTTCACAGTTGATACTTCCATCCTGAAG.....................................................................................GAAAAACCAGTGACTCCAGTTGATGAAGAAACTAAAATGGCCCAGATGGTGTGTTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343725" ref_strand="+" ref_description="SGN-E343725 [cTOF-20-B24]">
      <seq>ttgagtaaccgtgacgagtgtatggcttgtggaagttagatgctcctatgcagataaccagaagcattttgaacttttggcttttgttatttatctctccctgcctgctgggagagcttagtatcaatatgccatatcgagacatggctagtattaatgtccctggtttaattctttgtacatatattaggttatagtatcatcatgctattactaccaagtattttccttatattagttaatggtaaacttgatgagtcgatccatctaagcgtttgaatttatcttaatgtaacagtgatgacattgtgttaatgccaagaaaaacagatctggaatgcctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="44868" stop="45813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45168" g_stop="45510" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="355"/>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E343725" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45168" e_stop="45510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTAACCGTGACGAGTGTATGGCTTGTGGAAGTTAGATGCTCCTATGCAGATAACCAGAAGCATTTTGAACTTTTGGCTTTTGTTATTTATCTCTCCCTGCCTGCTGGGAGAGCTTAGTATCAATATGCCATATCGAGACATGGCTAGTATTAATGTCCCTGGTTTAATTCTTTGTACATATATTAGGTTATAGTATCATCATGCTATTACTACCAAGTATTTTCCTTATATTAGTTAATGGTAAACTTGATGAGTCGATCCATCTAAGCGTTTGAATTTATCTTAATGTAACAGTGATGACATTGTGTTAATGCCAAGAAAAACAGATCTGGAATGCCT</genome_strand>
        <mrna_strand>TTGAGTAACCGTGACGAGTGTATGGCTTGTGGAAGTTAGATGCTCCTATGCAGATAACCAGAAGCATTTTGAACTTTTGGCTTTTGTTATTTATCTCTCCCTGCCTGCTGGGAGAGCTTAGTATCAATATGCCATATCGAGACATGGCTAGTATTAATGTCCCTGGTTTAATTCTTTGTACATATATTAGGTTATAGTATCATCATGCTATTACTACCAAGTATTTTCCTTATATTAGTTAATGGTAAACTTGATGAGTCGATCCATCTAAGCGTTTGAATTTATCTTAATGTAACAGTGATGACATTGTGTTAATGCCAAGAAAAACAGATCTGGAATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389853" ref_strand="+" ref_description="SGN-E389853 [TUS-4-I7]">
      <seq>caacttctcttgaaacctaatttgttttctcttgcgggggaaaatgttcagtgcattagactgtctctcgatatttaaacttgtaattttatatatagtagtaagtatttgttagtactattatatacaattagcttcttccttttttttgtgtgttacatgtgtaaattcaaggtggcgaattatagaaagaaagggaattataaggcaattataagagatgatgaagaagaagaaagtgggattaataataatgataatattaatgtgatgttttctgggaatattaatagagaagaagagatgtctatgatggttactgcactgacacgtgtcattactggtgaagatagaatattaaatcaagaaaataataataataatattattggttcttcatctttgaatgaattttctggaggcgttggagaaaaaagaggacgtgaagagcagcaatatttcttgtctgatattattagttcatcaaaagttggtgaagattcaagcattaatagaactattgcaagcaacacaccaacaacagaagcaacattcatatacactactccaacatatgatcataataacaacaccaatattattgattgtgatcaaccaagaagaagatatagaggagtgagacaaaggccatggggaaaatgggctgctgaaattgagatcatacaagctgctaggggttggctcggaacattcgatactgctgaagatgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="50739" stop="53396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51039" g_stop="51527" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51528" i_stop="52848" i_length="1321">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52849" g_stop="53096" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="735" r_length="245" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E389853" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51039" e_stop="51527"/>
          <exon e_start="52849" e_stop="53096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCT-TCTTGAAACCTAATTTGTTTTCTCTTGCGGGGGAAAATGTTCAGTGCATTAGACTGTCTGTCGATATTTAAACTTGTAATTTTATATATAGTAGTAAGTATTTGTTAGTACTATTATATACAATTAGCTTCTTCCTTTTTTTTGTGTGTTACATGTGTAAATTCAAGGTGGCGAATTATAGAAAGAAAGGGAATTATAAGGCAATTATAAGAGATGATGAAGAAGAAGAAAGTGGGATTAATAATAATGATAATATTAATGTGATGTTTTCTGGGAATATTAATAGAGAAGAAGAGATGTCTATGATGGTTACTGCACTGACACGTGTCATTACTGGTGAAGATAGAATATTAAATCAAGAAAATAATAATAATAATATTATTGGTTCTTCATCTTTGAATGAATTTTCTGGAGGCGTTGGAGAAAAAAGAGGACGTGAAGAGCAGCAATATTTCTTGTCTGATATTATTAGTTCATCAAAAGGTATGCAAAATAATTCTGTACTTTTTGCTTCATATTTTATTTCGTTTGTAGGAATAAATTTGGAAAACATACTGAAATATTTCGGTTTTTTCGAATTTCGTATATGAATTATAAGGTTTATATGTGAGTTTTCTATCTGATTTATCATCACATCAAATGTTTATTGAATCGCATCTTATCTATCATTTGTTTAGTTTTTCTATGAAAAACAGATAGTTGAAGTATGTTTCGATAAATATTTGATGATAATGAAATAGAAAACTCAAAAAGAATTAAATTAAAATACTTAAGTGTGTTTTTGACTCTTAATTTTTTTTTAATGTATACAAGATAGAGTTTATTAGTTGGTTTGGAAATAAGTCATACAGTTATTATTGATGTCATACTAATATAATATTTAATTTATAATTTCAAAACTCGCATTATATATTCGAAATTCTAACCCCGCGAAGCGGCTGCTCTTCATCTCAAAAACTAACTAGCATGTCAATATTGTATGTAATGTAAATCCATGTAAGATAACATGAAGTAAGACTAGAGCCTCAAATTTTACTTTAGGTCATGTTAGTTTATTTACTTTAGTTTAATTTTTATGTTCTTTAAGAGTATAATTAAGGAGCTTAGTCCTTATATATAATACTACTACTACTAATAATAATGATATCATTATATTTATAGACCATTTTGTACTATATATAATTAAATATGAAGCAAAAGGAATTTCATTTTGGACTATCAAGTTATCTTTATTTGATGAACAAGTAGTATTTATAAATTTTACAGTATAATAAAAAGAAGTATCAACCAAACTAAGTCATTATATAATTTTTTTTTAAAATTCTTACAAAATTAGTATAAACGTATTTCACAGTAACGTTTTAGGGTATATTTTATTTTTTAAAAGCTGACGGAGTTAGATTGATATACATTACTCATAGTAACGTTTTACTCCTAAAACGTTAATGTGAGTAACGTCTTACTCTTAAAACGTTACTTACAATAACGTTTTAGGAGTAAAATGTTACTCACAGTAACGTATATCAACCTAACACTGTTAATTTTTAAAAATTGAAATATACCCTAAAACGTTACTGTGAAATACGTTTATACTAGTTTTATAAAATTTTGAAAAAATATATTATTTTGATAAATTATTTTATATAATAGCTTAATTTGATTTAAAAAAAAGCTTACGCGTAGTTATCTTTTCTGTGATTTGACACGGTAATAAGTTTATTTATACTAAAAAGGTATATAACAACTAGACATTCCCTTAAAATTTATGTTTTCTTGAAATGTGTGTTTTTATGTTAATTTATAGTTGGTGAAGATTCAAGCATTAATAGAACTATTGCAAGCAACACACCAACAACAGAAGCAACATTCATATACACTACTCCAACATATGATCATAATAACAACACCAATATTATTGATTGTGATCAACCAAGAAGAAGATATAGAGGAGTGAGACAAAGGCCATGGGGAAAATGGGCTGCTGAAATTAGAGATCCATACAAAGCTGCTAGGGTTTGGCTCGGAACATTCGATACTGCTGAAGATGCTGCT</genome_strand>
        <mrna_strand>CAACTTCTCTTGAAACCTAATTTGTTTTCTCTTGCGGGGGAAAATGTTCAGTGCATTAGACTGTCTCTCGATATTTAAACTTGTAATTTTATATATAGTAGTAAGTATTTGTTAGTACTATTATATACAATTAGCTTCTTCCTTTTTTTTGTGTGTTACATGTGTAAATTCAAGGTGGCGAATTATAGAAAGAAAGGGAATTATAAGGCAATTATAAGAGATGATGAAGAAGAAGAAAGTGGGATTAATAATAATGATAATATTAATGTGATGTTTTCTGGGAATATTAATAGAGAAGAAGAGATGTCTATGATGGTTACTGCACTGACACGTGTCATTACTGGTGAAGATAGAATATTAAATCAAGAAAATAATAATAATAATATTATTGGTTCTTCATCTTTGAATGAATTTTCTGGAGGCGTTGGAGAAAAAAGAGGACGTGAAGAGCAGCAATATTTCTTGTCTGATATTATTAGTTCATCAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGAAGATTCAAGCATTAATAGAACTATTGCAAGCAACACACCAACAACAGAAGCAACATTCATATACACTACTCCAACATATGATCATAATAACAACACCAATATTATTGATTGTGATCAACCAAGAAGAAGATATAGAGGAGTGAGACAAAGGCCATGGGGAAAATGGGCTGCTGAAATT-GAGAT-CATAC-AAGCTGCTAGGGGTTGGCTCGGAACATTCGATACTGCTGAAGATGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228164" ref_strand="+" ref_description="SGN-E228164 [cLED-2-C15]">
      <seq>aaccttcttgaaacctaatttgttttctcttgcgggggaaaatgttcagtgcattagactgtctgtcgatatttaaacttgtaattttatatatagtagtaagtatttgttagtactattatatacaattagcttcttccttttttttgtgtgttacatgtgtaaattcaaggtggcgaattatagaaagaaagggaattataaggcaattataagagatgatgaagaagaagaaagtgggattaataataatgataatattaatgtgatgttttctgggaatattaatagagaagaagagatgtctatgatggttactgcactgacacgtgtcattactggtgaagatagaatattaaatcaagaaaataataataataatattattggttcttcatctttgaatgaattttctggaggcgttggagaaaaaagaggacgtgaagagcagcaatatttcttgtctgatattatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="50740" stop="51815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51040" g_stop="51515" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E228164" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51040" e_stop="51515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTCTTGAAACCTAATTTGTTTTCTCTTGCGGGGGAAAATGTTCAGTGCATTAGACTGTCTGTCGATATTTAAACTTGTAATTTTATATATAGTAGTAAGTATTTGTTAGTACTATTATATACAATTAGCTTCTTCCTTTTTTTTGTGTGTTACATGTGTAAATTCAAGGTGGCGAATTATAGAAAGAAAGGGAATTATAAGGCAATTATAAGAGATGATGAAGAAGAAGAAAGTGGGATTAATAATAATGATAATATTAATGTGATGTTTTCTGGGAATATTAATAGAGAAGAAGAGATGTCTATGATGGTTACTGCACTGACACGTGTCATTACTGGTGAAGATAGAATATTAAATCAAGAAAATAATAATAATAATATTATTGGTTCTTCATCTTTGAATGAATTTTCTGGAGGCGTTGGAGAAAAAAGAGGACGTGAAGAGCAGCAATATTTCTTGTCTGATATTATTA</genome_strand>
        <mrna_strand>AACCTTCTTGAAACCTAATTTGTTTTCTCTTGCGGGGGAAAATGTTCAGTGCATTAGACTGTCTGTCGATATTTAAACTTGTAATTTTATATATAGTAGTAAGTATTTGTTAGTACTATTATATACAATTAGCTTCTTCCTTTTTTTTGTGTGTTACATGTGTAAATTCAAGGTGGCGAATTATAGAAAGAAAGGGAATTATAAGGCAATTATAAGAGATGATGAAGAAGAAGAAAGTGGGATTAATAATAATGATAATATTAATGTGATGTTTTCTGGGAATATTAATAGAGAAGAAGAGATGTCTATGATGGTTACTGCACTGACACGTGTCATTACTGGTGAAGATAGAATATTAAATCAAGAAAATAATAATAATAATATTATTGGTTCTTCATCTTTGAATGAATTTTCTGGAGGCGTTGGAGAAAAAAGAGGACGTGAAGAGCAGCAATATTTCTTGTCTGATATTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389898" ref_strand="+" ref_description="SGN-E389898 [TUS-4-L21]">
      <seq>ctcttgtcctacttcttcaatggaaaaagggtctctgacaacacatttccctcaaactccgtggaaagtaacttggaatttttgacgaagaaaaaagttctgacaagcacatttcctgcagaaaataatatggtattttcaacagaaagacagtttatgacggacacatttcccacggaatatgtacctgtttctagtattatttctcctaatacttctccaaatactctttcaacaatctcttttttccctaatagtaatccaatagctcacactcagttatctaatagcaatagtgatgacataaacactcaatatttcttgaatggtgattttcaaaggggcaattcatctctaagtttgttaaaccaatccatgttttctacaacattccagtattcttcttcttctccatcatcgtcttcttcttctcgagttccttttgttccgagtatgtatttttcaggttctcaacctactagccagagtagtgaaaatgattttcgggctacttcgtcagattcagctcatcaccctccaaaatgatctagtagaagtgactagttagggttttatgtttatcatataaatgtgatatatgaaaggattgcgcgtgtaggtggacaaagtccccttttttggtgatattgttgtggtagattataaaatgagaggtatttttggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="52869" stop="54155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53169" g_stop="53856" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E389898" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53169" e_stop="53856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTG-CCTACTTCTTCAATGGAAAAAGGGTCTCTGACAAACACATTTCCCTCAAACTCCGTGGAAAGTAACTTGGAATTTTTGACGAAGAAAAAAGTTCTGACAAGCACATTTCCTGCAGAAAATAATATGGTATTTTCAACAGAAAGACAGTTTATGACGGACACATTTCCCACGGAATATGTACCTGTTTCTAGTATTATTTCTCCTAATACTTCTCCAAATACTCTTTCAACAATCTCTTTTTTCCCTAATAGTAATCCAATAGCTCACACTCAGTTATCTAATAGCAATAGTGATGACATAAACACTCAATATTTCTTGAATGGTGATTTTCAAAGGGGCAATTCATCTCTAAGTTTGTTAAACCAATCCATGTTTTCTACAACATTCCAGTATTCTTCTTCTTCTCCATCATCGTCTTCTTCTTCTCGAGTTCCTTTTGTTCCGAGTATGTATTTTTCAGGTTCTCAACCTACTAGCCAGAGTAGTGAAAATGATTTTCGGGCTACTTCGTCAGATTCAGCTCATCACCCTCCAAAATGATCTAGTAGAAGTGACTAGTTAGGGTTTTATGTTTATCATATAAATGTGATATATGAAAGGATTGCGCGTGTAGGTGGACAAAGTCCCCTTTTTTGGTGATATTGTTGTGGTAGATTATAAAATGAGAGGTATTTTTGGAAAT</genome_strand>
        <mrna_strand>CTCTTGTCCTACTTCTTCAATGGAAAAAGGGTCTCTGAC-AACACATTTCCCTCAAACTCCGTGGAAAGTAACTTGGAATTTTTGACGAAGAAAAAAGTTCTGACAAGCACATTTCCTGCAGAAAATAATATGGTATTTTCAACAGAAAGACAGTTTATGACGGACACATTTCCCACGGAATATGTACCTGTTTCTAGTATTATTTCTCCTAATACTTCTCCAAATACTCTTTCAACAATCTCTTTTTTCCCTAATAGTAATCCAATAGCTCACACTCAGTTATCTAATAGCAATAGTGATGACATAAACACTCAATATTTCTTGAATGGTGATTTTCAAAGGGGCAATTCATCTCTAAGTTTGTTAAACCAATCCATGTTTTCTACAACATTCCAGTATTCTTCTTCTTCTCCATCATCGTCTTCTTCTTCTCGAGTTCCTTTTGTTCCGAGTATGTATTTTTCAGGTTCTCAACCTACTAGCCAGAGTAGTGAAAATGATTTTCGGGCTACTTCGTCAGATTCAGCTCATCACCCTCCAAAATGATCTAGTAGAAGTGACTAGTTAGGGTTTTATGTTTATCATATAAATGTGATATATGAAAGGATTGCGCGTGTAGGTGGACAAAGTCCCCTTTTTTGGTGATATTGTTGTGGTAGATTATAAAATGAGAGGTATTTTTGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389640" ref_strand="+" ref_description="SGN-E389640 [TUS-4-L21](-)">
      <seq>ctcttgcctacttcttcaatggaaaaagggtctctgacaaacacatttccctcaaactccgtggaaagtaacttggaatttttgacgaagaaaaaagttctgacaagcacatttcctgcagaaaataatatggtattttcaacagaaagacagtttatgacggacacatttcccacggaatatgtacctgtttctagtattatttctcctaatacttctccaaatactctttcaacaatctcttttttccctaatagtaatccaatagctcacactcagttatctaatagcaatagtgatgacataaacactcaatatttcttgaatggtgattttcaaaggggcaattcatctctaagtttgttaaaccaatccatgttttctacaacattccagtattcttcttcttctccatcatcgtcttcttcttctcgagttccttttgttccgagtatgtatttttcaggttctcaacctactagccagagtagtgaaaatgattttcgggctacttcgtcagattcagctcatcaccctccaaaatgatctagtagaagtgactagttagggttttatgtttatcatataaatgtgatatatgaaaggatagcgcgtgtaggtgttctcaagtccccagtaaggtgatattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="52869" stop="54102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53169" g_stop="53819" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E389640" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53169" e_stop="53819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGCCTACTTCTTCAATGGAAAAAGGGTCTCTGACAAACACATTTCCCTCAAACTCCGTGGAAAGTAACTTGGAATTTTTGACGAAGAAAAAAGTTCTGACAAGCACATTTCCTGCAGAAAATAATATGGTATTTTCAACAGAAAGACAGTTTATGACGGACACATTTCCCACGGAATATGTACCTGTTTCTAGTATTATTTCTCCTAATACTTCTCCAAATACTCTTTCAACAATCTCTTTTTTCCCTAATAGTAATCCAATAGCTCACACTCAGTTATCTAATAGCAATAGTGATGACATAAACACTCAATATTTCTTGAATGGTGATTTTCAAAGGGGCAATTCATCTCTAAGTTTGTTAAACCAATCCATGTTTTCTACAACATTCCAGTATTCTTCTTCTTCTCCATCATCGTCTTCTTCTTCTCGAGTTCCTTTTGTTCCGAGTATGTATTTTTCAGGTTCTCAACCTACTAGCCAGAGTAGTGAAAATGATTTTCGGGCTACTTCGTCAGATTCAGCTCATCACCCTCCAAAATGATCTAGTAGAAGTGACTAGTTAGGGTTTTATGTTTATCATATAAATGTGATATATGAAAGGATTGCGCGTGTAGGTGGAC-AAAGTCCCCTTTTTTGGTGATATTGT</genome_strand>
        <mrna_strand>CTCTTGCCTACTTCTTCAATGGAAAAAGGGTCTCTGACAAACACATTTCCCTCAAACTCCGTGGAAAGTAACTTGGAATTTTTGACGAAGAAAAAAGTTCTGACAAGCACATTTCCTGCAGAAAATAATATGGTATTTTCAACAGAAAGACAGTTTATGACGGACACATTTCCCACGGAATATGTACCTGTTTCTAGTATTATTTCTCCTAATACTTCTCCAAATACTCTTTCAACAATCTCTTTTTTCCCTAATAGTAATCCAATAGCTCACACTCAGTTATCTAATAGCAATAGTGATGACATAAACACTCAATATTTCTTGAATGGTGATTTTCAAAGGGGCAATTCATCTCTAAGTTTGTTAAACCAATCCATGTTTTCTACAACATTCCAGTATTCTTCTTCTTCTCCATCATCGTCTTCTTCTTCTCGAGTTCCTTTTGTTCCGAGTATGTATTTTTCAGGTTCTCAACCTACTAGCCAGAGTAGTGAAAATGATTTTCGGGCTACTTCGTCAGATTCAGCTCATCACCCTCCAAAATGATCTAGTAGAAGTGACTAGTTAGGGTTTTATGTTTATCATATAAATGTGATATATGAAAGGATAGCGCGTGTAGGTGTTCTCAAGTCCCC-AGTAAGGTGATATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550237" ref_strand="+" ref_description="SGN-E550237 [TUS-5-L21](-)">
      <seq>ctcttgcctacttcttcaatggaaaaagggtctctgacaaacacatttccctcaaactccgtggaaagtaacttggaatttttgacgaagaaaaaagttctgacaagcacatttcctgcagaaaataatatggtattttcaacagaaagacagtttatgacggacacatttcccacggaatatgtacctgtttctagtattatttctcctaatacttctccaaatactctttcaacaatctcttttttccctaatagtaatccaatagctcacactcagttatctaatagcaatagtgatgacataaacactcaatatttcttgaatggtgattttcaaaggggcaattcatctctaagtttgttaaaccaatccatgttttctacaacattccagtattcttcttcttctccatcatcgtcttcttcttctcgagttccttttgttccgagtatgtatttttcaggttctcaacctactagccagagtagtgaaaatgattttcgggctacttcgtcagattcagctcatcaccctccaaaatgatctagtagaagtgactagttagggttttatgtttatcatataaatgtgatatatgaaaggatggcgcgtgtaggtggacaaagtccccttttaggtgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="52869" stop="54115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53169" g_stop="53815" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E550237" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53169" e_stop="53815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGCCTACTTCTTCAATGGAAAAAGGGTCTCTGACAAACACATTTCCCTCAAACTCCGTGGAAAGTAACTTGGAATTTTTGACGAAGAAAAAAGTTCTGACAAGCACATTTCCTGCAGAAAATAATATGGTATTTTCAACAGAAAGACAGTTTATGACGGACACATTTCCCACGGAATATGTACCTGTTTCTAGTATTATTTCTCCTAATACTTCTCCAAATACTCTTTCAACAATCTCTTTTTTCCCTAATAGTAATCCAATAGCTCACACTCAGTTATCTAATAGCAATAGTGATGACATAAACACTCAATATTTCTTGAATGGTGATTTTCAAAGGGGCAATTCATCTCTAAGTTTGTTAAACCAATCCATGTTTTCTACAACATTCCAGTATTCTTCTTCTTCTCCATCATCGTCTTCTTCTTCTCGAGTTCCTTTTGTTCCGAGTATGTATTTTTCAGGTTCTCAACCTACTAGCCAGAGTAGTGAAAATGATTTTCGGGCTACTTCGTCAGATTCAGCTCATCACCCTCCAAAATGATCTAGTAGAAGTGACTAGTTAGGGTTTTATGTTTATCATATAAATGTGATATATGAAAGGATTGCGCGTGTAGGTGGACAAAGTCCCCTTTTTTGGTGATA</genome_strand>
        <mrna_strand>CTCTTGCCTACTTCTTCAATGGAAAAAGGGTCTCTGACAAACACATTTCCCTCAAACTCCGTGGAAAGTAACTTGGAATTTTTGACGAAGAAAAAAGTTCTGACAAGCACATTTCCTGCAGAAAATAATATGGTATTTTCAACAGAAAGACAGTTTATGACGGACACATTTCCCACGGAATATGTACCTGTTTCTAGTATTATTTCTCCTAATACTTCTCCAAATACTCTTTCAACAATCTCTTTTTTCCCTAATAGTAATCCAATAGCTCACACTCAGTTATCTAATAGCAATAGTGATGACATAAACACTCAATATTTCTTGAATGGTGATTTTCAAAGGGGCAATTCATCTCTAAGTTTGTTAAACCAATCCATGTTTTCTACAACATTCCAGTATTCTTCTTCTTCTCCATCATCGTCTTCTTCTTCTCGAGTTCCTTTTGTTCCGAGTATGTATTTTTCAGGTTCTCAACCTACTAGCCAGAGTAGTGAAAATGATTTTCGGGCTACTTCGTCAGATTCAGCTCATCACCCTCCAAAATGATCTAGTAGAAGTGACTAGTTAGGGTTTTATGTTTATCATATAAATGTGATATATGAAAGGATGGCGCGTGTAGGTGGACAAAGTCCCC-TTTTAGGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233465" ref_strand="+" ref_description="SGN-E233465 [cLED-9-F4]">
      <seq>tcttgcctacttcttcaatggaaaaagggtctctgacaaacacatttccctcaaactccgtggaaagtaacttggaatttttgacgaagaaaaaagttctgacaagcacatttcctgcagaaaataatatggtattttcaacagaaagacagtttatgacggacacatttcccacggaatatgtacctgtttctagtattatttctcctaatacttctccaaatactctttcaacaatctcttttttccctaatagtaatccaatagctcacactcagttatctaatagcaatagtgatgacataaacactcaatatttcttgaatggtgattttcaaaggggcaattcatctctaagtttgttaaaccaatccatgttttctacaacattccagtattcttcttcttctccatcatcgtcttcttcttctcgagttccttttgttccgagtatgtatttttcaggttctcaacctactagccagagtagtgaaaatgattttcgggctacttcgtcagattcagctcatcacccttcaaaatgatctagtagaagtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="52870" stop="54029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53170" g_stop="53729" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E233465" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53170" e_stop="53729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGCCTACTTCTTCAATGGAAAAAGGGTCTCTGACAAACACATTTCCCTCAAACTCCGTGGAAAGTAACTTGGAATTTTTGACGAAGAAAAAAGTTCTGACAAGCACATTTCCTGCAGAAAATAATATGGTATTTTCAACAGAAAGACAGTTTATGACGGACACATTTCCCACGGAATATGTACCTGTTTCTAGTATTATTTCTCCTAATACTTCTCCAAATACTCTTTCAACAATCTCTTTTTTCCCTAATAGTAATCCAATAGCTCACACTCAGTTATCTAATAGCAATAGTGATGACATAAACACTCAATATTTCTTGAATGGTGATTTTCAAAGGGGCAATTCATCTCTAAGTTTGTTAAACCAATCCATGTTTTCTACAACATTCCAGTATTCTTCTTCTTCTCCATCATCGTCTTCTTCTTCTCGAGTTCCTTTTGTTCCGAGTATGTATTTTTCAGGTTCTCAACCTACTAGCCAGAGTAGTGAAAATGATTTTCGGGCTACTTCGTCAGATTCAGCTCATCACCCTCCAAAATGATCTAGTAGAAGTGAC</genome_strand>
        <mrna_strand>TCTTGCCTACTTCTTCAATGGAAAAAGGGTCTCTGACAAACACATTTCCCTCAAACTCCGTGGAAAGTAACTTGGAATTTTTGACGAAGAAAAAAGTTCTGACAAGCACATTTCCTGCAGAAAATAATATGGTATTTTCAACAGAAAGACAGTTTATGACGGACACATTTCCCACGGAATATGTACCTGTTTCTAGTATTATTTCTCCTAATACTTCTCCAAATACTCTTTCAACAATCTCTTTTTTCCCTAATAGTAATCCAATAGCTCACACTCAGTTATCTAATAGCAATAGTGATGACATAAACACTCAATATTTCTTGAATGGTGATTTTCAAAGGGGCAATTCATCTCTAAGTTTGTTAAACCAATCCATGTTTTCTACAACATTCCAGTATTCTTCTTCTTCTCCATCATCGTCTTCTTCTTCTCGAGTTCCTTTTGTTCCGAGTATGTATTTTTCAGGTTCTCAACCTACTAGCCAGAGTAGTGAAAATGATTTTCGGGCTACTTCGTCAGATTCAGCTCATCACCCTTCAAAATGATCTAGTAGAAGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389597" ref_strand="+" ref_description="SGN-E389597 [TUS-4-I7](-)">
      <seq>gcaatagtgatgacataaacactcaatatttcttgaatggtgattttcaaaggggcaattcatctctaagtttgttaaaccaatccaggttttctacaacattgcagtattcttcttcttctccatcatcgtcttcttcttctagagttcattttgttccgagtatgtatttttcaggttctcaacctcctagccagagtagtgaaaatgattttcgggctacttcgtcagattcagctcatcaccctccaaaatgatctagtagaagtgactagttagggtttcatgtttatcatataaatgtgatatatgaaaggattgcgcgtcgagatggacaaagtccccttttttggtgatattgttgtggtagattataaaatgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="53158" stop="54142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53458" g_stop="53842" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E389597" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53458" e_stop="53842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATAGTGATGACATAAACACTCAATATTTCTTGAATGGTGATTTTCAAAGGGGCAATTCATCTCTAAGTTTGTTAAACCAATCCATGTTTTCTACAACATTCCAGTATTCTTCTTCTTCTCCATCATCGTCTTCTTCTTCTCGAGTTCCTTTTGTTCCGAGTATGTATTTTTCAGGTTCTCAACCTACTAGCCAGAGTAGTGAAAATGATTTTCGGGCTACTTCGTCAGATTCAGCTCATCACCCTCCAAAATGATCTAGTAGAAGTGACTAGTTAGGGTTTTATGTTTATCATATAAATGTGATATATGAAAGGATTGCGCGTGTAGGTGGACAAAGTCCCCTTTTTTGGTGATATTGTTGTGGTAGATTATAAAATGAGAG</genome_strand>
        <mrna_strand>GCAATAGTGATGACATAAACACTCAATATTTCTTGAATGGTGATTTTCAAAGGGGCAATTCATCTCTAAGTTTGTTAAACCAATCCAGGTTTTCTACAACATTGCAGTATTCTTCTTCTTCTCCATCATCGTCTTCTTCTTCTAGAGTTCATTTTGTTCCGAGTATGTATTTTTCAGGTTCTCAACCTCCTAGCCAGAGTAGTGAAAATGATTTTCGGGCTACTTCGTCAGATTCAGCTCATCACCCTCCAAAATGATCTAGTAGAAGTGACTAGTTAGGGTTTCATGTTTATCATATAAATGTGATATATGAAAGGATTGCGCGTCGAGATGGACAAAGTCCCCTTTTTTGGTGATATTGTTGTGGTAGATTATAAAATGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223299" ref_strand="+" ref_description="SGN-E223299 [cLEL-14-P10](-)">
      <seq>gatggggaaagcctgaaaaagttatttcaccaatttcaacaagtaatccaccaattaaaaacatgttttttttgatggctgataaaaatagagatggagtgaatctaacatgtagcatgaagaaacaagacatgttagcttttgagagggatgaagagctcttacgatttgcctctccaactagctaaatcaatcgtactcacagccagagtaatatcgtggtgagttgtgtgaaataaaagagtgttagcttgttttgaaggtgtggtagtagtctcttcatgacactatcaagttgtaacactttttactccgttaaaagatatttggtattgttgttactctattgttctagtcagattctacaaaattttctccaaggagcttgatagaatgattattttgaatttttaaaaatattgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="76565" stop="77592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76865" g_stop="77291" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="447"/>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E223299" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76865" e_stop="77291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGGGAAAGCCTGAAAAAGTTATTTCACCAATTTCAACAAGTAATCCACCAATTAAAAACATGTTTTTTTTGATGGCTGATAAAAATAGAGATGGAGTGAATCTAACATGTAGCATGAAGAAACAAGACATGTTAGCTTTTGAGAGGGATGAAGAGCTCTTACGATTTGCCTCTCCAACTAGCTAAATCAATCGTACTCACAGCCAGAGTAATATCGTGGTGAGTTGTGTGAAATAAAAGAGTGTTAGCTTGTTTTGAAGGTGTGGTAGTAGTCTCTTCATGACACTATCAAGTTGTAACACTTTTTACTCCGTTAAAAGATATTTGGTATTGTTGTTACTCTATTGTTCTAGTCAGATTCTACAAAATTTTCTCCAAGGAGCTTGATAGAATGATTATTTTGAATTTTTAAAAATATTGAAAGA</genome_strand>
        <mrna_strand>GATGGGGAAAGCCTGAAAAAGTTATTTCACCAATTTCAACAAGTAATCCACCAATTAAAAACATGTTTTTTTTGATGGCTGATAAAAATAGAGATGGAGTGAATCTAACATGTAGCATGAAGAAACAAGACATGTTAGCTTTTGAGAGGGATGAAGAGCTCTTACGATTTGCCTCTCCAACTAGCTAAATCAATCGTACTCACAGCCAGAGTAATATCGTGGTGAGTTGTGTGAAATAAAAGAGTGTTAGCTTGTTTTGAAGGTGTGGTAGTAGTCTCTTCATGACACTATCAAGTTGTAACACTTTTTACTCCGTTAAAAGATATTTGGTATTGTTGTTACTCTATTGTTCTAGTCAGATTCTACAAAATTTTCTCCAAGGAGCTTGATAGAATGATTATTTTGAATTTTTAAAAATATTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223061" ref_strand="+" ref_description="SGN-E223061 [cLEL-14-P10](-)">
      <seq>ggggaaagcctgaaaaagttatttcgccaatttcaacaagtaatccaccaattaaaaacatgttttttttgatggctgataaaaataaagatggagtgaatctaacatgtagcatgaagaaacaagacatgttagcttttgagagggatgaagagctcttacgatttgcctctccaactagctaaatcaatcgtactcacagccagagtaatatcgtggtgagttgtgtgaaataaaagagtgttagcttgttttgaaggtgtggtagtagtctcttcatgacactatcaagttgtaacactttttactccgttaaaagatatttggtattgttgttactctattgttctagtcagattctacaaaattttctccaaggagcttgatagaatgattattttgaatttttaaaaatattgaaaaaagataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0070F01-fyPhB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0070F01.1" temp_strand="+" temp_description="C04HBa0070F01.1  CU856251.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0070F01 sequenced_by:sanger upload_account_name:uk">
        <position start="76568" stop="77592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76868" g_stop="77291" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="444"/>
      <MATCH_line gen_id="C04HBa0070F01.1" gen_strand="+" ref_id="SGN-E223061" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0070F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76868" e_stop="77291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAAAGCCTGAAAAAGTTATTTCACCAATTTCAACAAGTAATCCACCAATTAAAAACATGTTTTTTTTGATGGCTGATAAAAATAGAGATGGAGTGAATCTAACATGTAGCATGAAGAAACAAGACATGTTAGCTTTTGAGAGGGATGAAGAGCTCTTACGATTTGCCTCTCCAACTAGCTAAATCAATCGTACTCACAGCCAGAGTAATATCGTGGTGAGTTGTGTGAAATAAAAGAGTGTTAGCTTGTTTTGAAGGTGTGGTAGTAGTCTCTTCATGACACTATCAAGTTGTAACACTTTTTACTCCGTTAAAAGATATTTGGTATTGTTGTTACTCTATTGTTCTAGTCAGATTCTACAAAATTTTCTCCAAGGAGCTTGATAGAATGATTATTTTGAATTTTTAAAAATATTGAAAGA</genome_strand>
        <mrna_strand>GGGGAAAGCCTGAAAAAGTTATTTCGCCAATTTCAACAAGTAATCCACCAATTAAAAACATGTTTTTTTTGATGGCTGATAAAAATAAAGATGGAGTGAATCTAACATGTAGCATGAAGAAACAAGACATGTTAGCTTTTGAGAGGGATGAAGAGCTCTTACGATTTGCCTCTCCAACTAGCTAAATCAATCGTACTCACAGCCAGAGTAATATCGTGGTGAGTTGTGTGAAATAAAAGAGTGTTAGCTTGTTTTGAAGGTGTGGTAGTAGTCTCTTCATGACACTATCAAGTTGTAACACTTTTTACTCCGTTAAAAGATATTTGGTATTGTTGTTACTCTATTGTTCTAGTCAGATTCTACAAAATTTTCTCCAAGGAGCTTGATAGAATGATTATTTTGAATTTTTAAAAATATTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>51</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="1479"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="441"/>
            <exon e_start="686" e_stop="808"/>
            <exon e_start="926" e_stop="1042"/>
            <exon e_start="1131" e_stop="1479"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1" e_stop="441" e_length="441"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="442" i_stop="685" i_length="244"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="686" e_stop="808" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="809" i_stop="925" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="926" e_stop="1042" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="1043" i_stop="1130" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="1131" e_stop="1479" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4" stop="213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48" stop="441"/>
              <exon start="686" stop="772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="193" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="205" stop="439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="230" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="233" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="241" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="275" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="278" stop="441"/>
              <exon start="686" stop="691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="305" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="310" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="372" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="377" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="396" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="398" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="410" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="412" stop="441"/>
              <exon start="686" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="737" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283627" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="772" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="779" stop="808"/>
              <exon start="926" stop="1042"/>
              <exon start="1131" stop="1425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577975" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="958" stop="1042"/>
              <exon start="1131" stop="1425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="959" stop="1042"/>
              <exon start="1131" stop="1425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="959" stop="1042"/>
              <exon start="1131" stop="1425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCTTGCTGAGCAAGCTGAACGCTATGAGGAGATGGTAGAATTCATGGAGAAGGTCGTCGCGGCCTTGAACGGTGAGGAACTTACCGTCGAGGAACGCAACCTTCTCTCCGTCGCATACAAAAACGTGATCGGAGCTAGGAGAGCATCGTGGCGTATAATTTCATCGATCGAGCAGAAAGAGGAGAGTCGTGGTAACGAAGATCACGTTGCCTCCATTAAGAAATACAGATCTCAGATCGAGAATGAGCTGACTTCGATCTGTAACGGCATCCTCAAGTTGCTTGATTCCAAACTCATCGGGTCAGCTGCTACCGGAGACTCCAAGGTTTTCTATTTGAAAATGAAGGGAGATTACTACCGGTACTTGGCTGAGTTCAAAACCGGAACCGAGAGAAAAGAAGCTGCAGAGAATACTCTTTCGGCCTACAAGTCTGCTCAG : GATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGATATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAG : GCCTTTGATGAGGCAATTGCGGAGCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCGTGATAACCTCACTTTGTGGACCTCGGATATGCAG : GATGATGGAACTGATGAGATCAAAGAACCATCAAAAGCTGATAATGAGTAGTAACATCGTGAGTGAAACTTCTTTGCTTAGAATTGACAACCGATGATGTAATTTTACTCATTGATCAAAATTGGCTGTTTGTAGTCCTTATCCTGTGATTTGTAATACCTATTACCTAAAGGCGCTGTTTCTTGCCATTTGTTGTTTTCATCAAAGATTACCTTTTGTCTACGTATTTCTCTTGTATTTGGATGCTCTGATGAAGCTCTCTTATTTCGTGGAAATGAATATTTATTTTCACGAAGCAAGTAGTACTTTTTATTTCCTTTTTCTCGAAGAAGTAGAGCATTGTGGATTG</gDNA_template>
            <first_frame> K  L  A  E  Q  A  E  R  Y  E  E  M  V  E  F  M  E  K  V  V  A  A  L  N  G  E  E  L  T  V  E  E  R  N  L  L  S  V  A  Y  K  N  V  I  G  A  R  R  A  S  W  R  I  I  S  S  I  E  Q  K  E  E  S  R  G  N  E  D  H  V  A  S  I  K  K  Y  R  S  Q  I  E  N  E  L  T  S  I  C  N  G  I  L  K  L  L  D  S  K  L  I  G  S  A  A  T  G  D  S  K  V  F  Y  L  K  M  K  G  D  Y  Y  R  Y  L  A  E  F  K  T  G  T  E  R  K  E  A  A  E  N  T  L  S  A  Y  K  S  A  Q  :  D  I  A  N  G  E  L  A  P  T  H  P  I  R  L  G  L  A  L  N  F  S  V  F  Y  Y  E  I  L  N  S  P  D  R  A  C  N  L  A  K  Q  :  A  F  D  E  A  I  A  E  L  D  T  L  G  E  E  S  Y  K  D  S  T  L  I  M  Q  L  L  R  D  N  L  T  L  W  T  S  D  M  Q  :  D  D  G  T  D  E  I  K  E  P  S  K  A  D  N  E  *  *  H  R  E  *  N  F  F  A  *  N  *  Q  P  M  M  *  F  Y  S  L  I  K  I  G  C  L  *  S  L  S  C  D  L  *  Y  L  L  P  K  G  A  V  S  C  H  L  L  F  S  S  K  I  T  F  C  L  R  I  S  L  V  F  G  C  S  D  E  A  L  L  F  R  G  N  E  Y  L  F  S  R  S  K  *  Y  F  L  F  P  F  S  R  R  S  R  A  L  W  I  </first_frame>
            <second_frame>  S  L  L  S  K  L  N  A  M  R  R  W  *  N  S  W  R  R  S  S  R  P  *  T  V  R  N  L  P  S  R  N  A  T  F  S  P  S  H  T  K  T  *  S  E  L  G  E  H  R  G  V  *  F  H  R  S  S  R  K  R  R  V  V  V  T  K  I  T  L  P  P  L  R  N  T  D  L  R  S  R  M  S  *  L  R  S  V  T  A  S  S  S  C  L  I  P  N  S  S  G  Q  L  L  P  E  T  P  R  F  S  I  *  K  *  R  E  I  T  T  G  T  W  L  S  S  K  P  E  P  R  E  K  K  L  Q  R  I  L  F  R  P  T  S  L  L  R :   I  S  L  M  A  N  W  P  Q  H  I  Q  S  D  W  V  *  L  S  I  S  Q  C  F  T  M  R  Y  *  I  L  L  I  V  L  V  I  S  P  N  R :   P  L  M  R  Q  L  R  S  L  T  P  W  E  R  S  P  T  R  I  A  L  *  L  C  N  F  C  V  I  T  S  L  C  G  P  R  I  C  R :   M  M  E  L  M  R  S  K  N  H  Q  K  L  I  M  S  S  N  I  V  S  E  T  S  L  L  R  I  D  N  R  *  C  N  F  T  H  *  S  K  L  A  V  C  S  P  Y  P  V  I  C  N  T  Y  Y  L  K  A  L  F  L  A  I  C  C  F  H  Q  R  L  P  F  V  Y  V  F  L  L  Y  L  D  A  L  M  K  L  S  Y  F  V  E  M  N  I  Y  F  H  E  A  S  S  T  F  Y  F  L  F  L  E  E  V  E  H  C  G  L </second_frame>
            <third_frame>   A  C  *  A  S  *  T  L  *  G  D  G  R  I  H  G  E  G  R  R  G  L  E  R  *  G  T  Y  R  R  G  T  Q  P  S  L  R  R  I  Q  K  R  D  R  S  *  E  S  I  V  A  Y  N  F  I  D  R  A  E  R  G  E  S  W  *  R  R  S  R  C  L  H  *  E  I  Q  I  S  D  R  E  *  A  D  F  D  L  *  R  H  P  Q  V  A  *  F  Q  T  H  R  V  S  C  Y  R  R  L  Q  G  F  L  F  E  N  E  G  R  L  L  P  V  L  G  *  V  Q  N  R  N  R  E  K  R  S  C  R  E  Y  S  F  G  L  Q  V  C  S   : G  Y  R  *  W  R  I  G  P  N  T  S  N  P  I  G  S  S  S  Q  F  L  S  V  L  L  *  D  I  E  F  S  *  S  C  L  *  S  R  Q  T   : G  L  *  *  G  N  C  G  A  *  H  P  G  R  G  V  L  Q  G  *  H  F  D  Y  A  T  S  A  *  *  P  H  F  V  D  L  G  Y  A   : G  *  W  N  *  *  D  Q  R  T  I  K  S  *  *  *  V  V  T  S  *  V  K  L  L  C  L  E  L  T  T  D  D  V  I  L  L  I  D  Q  N  W  L  F  V  V  L  I  L  *  F  V  I  P  I  T  *  R  R  C  F  L  P  F  V  V  F  I  K  D  Y  L  L  S  T  Y  F  S  C  I  W  M  L  *  *  S  S  L  I  S  W  K  *  I  F  I  F  T  K  Q  V  V  L  F  I  S  F  F  S  K  K  *  S  I  V  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0070F01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1" stop="441"/>
                    <exon start="686" stop="808"/>
                    <exon start="926" stop="1042"/>
                    <exon start="1131" stop="1181"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLAEQAERYEEMVEFMEKVVAALNGEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVASIKKYRSQIENELTSICNGILKLLDSKLIGSAATGDSKVFYLKMKGDYYRYLAEFKTGTERKEAAENTLSAYKSAQDIANGELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGTDEIKEPSKADNE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0070F01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1246" stop="1479"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKLAVCSPYPVICNTYYLKALFLAICCFHQRLPFVYVFLLYLDALMKLSYFVEMNIYFHEASSTFYFLFLEEVEHCGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="30919" PGL_stop="30113"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30919" e_stop="30790"/>
            <exon e_start="30689" e_stop="30630"/>
            <exon e_start="30552" e_stop="30113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.872" e_score="0.977"/>
          <exon-intron don_prob="0.996" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="30919" e_stop="30790" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.872">
            <gDNA_intron_boundary i_start="30789" i_stop="30690" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30689" e_stop="30630" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.980">
            <gDNA_intron_boundary i_start="30629" i_stop="30553" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="0.932">
            <gDNA_exon_boundary e_start="30552" e_stop="30113" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30919" stop="30790"/>
              <exon start="30689" stop="30630"/>
              <exon start="30552" stop="30113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543430" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTCATTTAGGAGTTCATTAACTCCTAGATTGGTACAAGCTCTAGTGTACCTTCAAGATTGGCTTCGGAGTGAGCCATAACCCATAAGTATTGAGGAAGATTTAGATTTTCTTGAGCAACTTGAAGAAG : ATTTTGCTAAACTTGGAAAAGAACTTTGCATTGATGACATGTAAAATTGGAGGAAGGAAG : ATTTCATCATGCATCGATCACTTGTTTGGAATCACTATGAAAAACTTGAAGAAAATGAAGATGGATCGTGGAAGGTAAAATGTATTCATTGTGGCTGTGTTTATTACCATTCACGCAATACTGAGACTGCCTCCTTAAGAAGGCATGTTAAGGGTTATTTGGAAAACAGAAACCAAAATCGTCAACTTTTGAGGATTGATGACTAGTTATTATTATGTTTAGACTTAATTTTCAGGTTGTGTTACTGCTGTCTGGTGTCTGCTATTTTAAATTTGTCTGTGTGTGACTGTGTGAAGTGTGGAGTGTGAACTGTGGCAGCCTGGTAGGCTGGAATTGTGTTGAATTTTTTACTTCTGTAATGTTGCAACTTGCATGCTTGTAGCTTGTACTGTTGGCTATTATTATGTTACAGTTTTTGACTGCTTTATTATGTTATTTTA</gDNA_template>
            <first_frame> D  S  F  R  S  S  L  T  P  R  L  V  Q  A  L  V  Y  L  Q  D  W  L  R  S  E  P  *  P  I  S  I  E  E  D  L  D  F  L  E  Q  L  E  E   : D  F  A  K  L  G  K  E  L  C  I  D  D  M  *  N  W  R  K  E   : D  F  I  M  H  R  S  L  V  W  N  H  Y  E  K  L  E  E  N  E  D  G  S  W  K  V  K  C  I  H  C  G  C  V  Y  Y  H  S  R  N  T  E  T  A  S  L  R  R  H  V  K  G  Y  L  E  N  R  N  Q  N  R  Q  L  L  R  I  D  D  *  L  L  L  C  L  D  L  I  F  R  L  C  Y  C  C  L  V  S  A  I  L  N  L  S  V  C  D  C  V  K  C  G  V  *  T  V  A  A  W  *  A  G  I  V  L  N  F  L  L  L  *  C  C  N  L  H  A  C  S  L  Y  C  W  L  L  L  C  Y  S  F  *  L  L  Y  Y  V  I  L </first_frame>
            <second_frame>  I  H  L  G  V  H  *  L  L  D  W  Y  K  L  *  C  T  F  K  I  G  F  G  V  S  H  N  P  *  V  L  R  K  I  *  I  F  L  S  N  L  K  K  :  I  L  L  N  L  E  K  N  F  A  L  M  T  C  K  I  G  G  R  K  :  I  S  S  C  I  D  H  L  F  G  I  T  M  K  N  L  K  K  M  K  M  D  R  G  R  *  N  V  F  I  V  A  V  F  I  T  I  H  A  I  L  R  L  P  P  *  E  G  M  L  R  V  I  W  K  T  E  T  K  I  V  N  F  *  G  L  M  T  S  Y  Y  Y  V  *  T  *  F  S  G  C  V  T  A  V  W  C  L  L  F  *  I  C  L  C  V  T  V  *  S  V  E  C  E  L  W  Q  P  G  R  L  E  L  C  *  I  F  Y  F  C  N  V  A  T  C  M  L  V  A  C  T  V  G  Y  Y  Y  V  T  V  F  D  C  F  I  M  L  F   </second_frame>
            <third_frame>   F  I  *  E  F  I  N  S  *  I  G  T  S  S  S  V  P  S  R  L  A  S  E  *  A  I  T  H  K  Y  *  G  R  F  R  F  S  *  A  T  *  R  R :   F  C  *  T  W  K  R  T  L  H  *  *  H  V  K  L  E  E  G  R :   F  H  H  A  S  I  T  C  L  E  S  L  *  K  T  *  R  K  *  R  W  I  V  E  G  K  M  Y  S  L  W  L  C  L  L  P  F  T  Q  Y  *  D  C  L  L  K  K  A  C  *  G  L  F  G  K  Q  K  P  K  S  S  T  F  E  D  *  *  L  V  I  I  M  F  R  L  N  F  Q  V  V  L  L  L  S  G  V  C  Y  F  K  F  V  C  V  *  L  C  E  V  W  S  V  N  C  G  S  L  V  G  W  N  C  V  E  F  F  T  S  V  M  L  Q  L  A  C  L  *  L  V  L  L  A  I  I  M  L  Q  F  L  T  A  L  L  C  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0070F01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30645" stop="30630"/>
                    <exon start="30552" stop="30347"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWRKEDFIMHRSLVWNHYEKLEENEDGSWKVKCIHCGCVYYHSRNTETASLRRHVKGYLENRNQNRQLLRIDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="31905" PGL_stop="31227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31905" e_stop="31227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="31905" e_stop="31227" e_length="679"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31905" stop="31233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31836" stop="31227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGCAAATGTGTCTATTGAACGAGTTAGGCAAGCAGTGAGATACATCAGGCAATCTCCTGCTAGGTGGAAAATATTTCAAGAATGTTGTGAAGATGAAAATCTTGTTAAAAAGTCTTTATGCTTGGATGTTCCTAGAAGGTGGAATTCCATCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACGCCGATCGTGATATTGGCTTGGCACTATACTTAAGTTTGTTGATAAAAATTCTACAGGTACACTTTTGAGTAGTGATTGGGAGGGCGTAAAGAGAACTACAAAATTTCTTGAAATGTTTTTTAATCTTACTTTGAAGATATATGGTTCACGATATGTTACATCAAATCTTCATTTTCTTGAAATTTATCAAGTTGGTGTTTACTTGAATCAATTGATATCAAATGAAGATCAAGTTTTGGCTAAAATGACAGAAAATATGAAGGAGAAATTTGACAAATATTTGGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACTATGTGTTTTGGATCCTCATCACAAATTTAGTACTCTTGGCTTTGCAATTAAGAAGATGTTTGGAGAAAAAGGGGATGCTATAGAAAATGGTGCGCGAACGTACATGGAAGCTTTGTTTAATGAGTATACAAACCCCATTTCAAATGATAAA</gDNA_template>
            <first_frame> R  S  K  C  V  Y  *  T  S  *  A  S  S  E  I  H  Q  A  I  S  C  *  V  E  N  I  S  R  M  L  *  R  *  K  S  C  *  K  V  F  M  L  G  C  S  *  K  V  E  F  H  L  H  D  V  E  Q  G  Y  *  I  *  R  G  N  C  R  V  R  R  S  *  Y  W  L  G  T  I  L  K  F  V  D  K  N  S  T  G  T  L  L  S  S  D  W  E  G  V  K  R  T  T  K  F  L  E  M  F  F  N  L  T  L  K  I  Y  G  S  R  Y  V  T  S  N  L  H  F  L  E  I  Y  Q  V  G  V  Y  L  N  Q  L  I  S  N  E  D  Q  V  L  A  K  M  T  E  N  M  K  E  K  F  D  K  Y  L  G  *  C  *  K  N  E  *  D  G  F  H  T  M  C  F  G  S  S  S  Q  I  *  Y  S  W  L  C  N  *  E  D  V  W  R  K  R  G  C  Y  R  K  W  C  A  N  V  H  G  S  F  V  *  *  V  Y  K  P  H  F  K  *  *  </first_frame>
            <second_frame>  E  A  N  V  S  I  E  R  V  R  Q  A  V  R  Y  I  R  Q  S  P  A  R  W  K  I  F  Q  E  C  C  E  D  E  N  L  V  K  K  S  L  C  L  D  V  P  R  R  W  N  S  I  Y  M  M  L  S  R  V  I  E  Y  E  G  A  I  V  E  Y  A  D  R  D  I  G  L  A  L  Y  L  S  L  L  I  K  I  L  Q  V  H  F  *  V  V  I  G  R  A  *  R  E  L  Q  N  F  L  K  C  F  L  I  L  L  *  R  Y  M  V  H  D  M  L  H  Q  I  F  I  F  L  K  F  I  K  L  V  F  T  *  I  N  *  Y  Q  M  K  I  K  F  W  L  K  *  Q  K  I  *  R  R  N  L  T  N  I  W  G  D  A  E  K  M  N  K  M  V  F  I  L  C  V  L  D  P  H  H  K  F  S  T  L  G  F  A  I  K  K  M  F  G  E  K  G  D  A  I  E  N  G  A  R  T  Y  M  E  A  L  F  N  E  Y  T  N  P  I  S  N  D  K </second_frame>
            <third_frame>   K  Q  M  C  L  L  N  E  L  G  K  Q  *  D  T  S  G  N  L  L  L  G  G  K  Y  F  K  N  V  V  K  M  K  I  L  L  K  S  L  Y  A  W  M  F  L  E  G  G  I  P  S  T  *  C  *  A  G  L  L  N  M  K  G  Q  L  *  S  T  P  I  V  I  L  A  W  H  Y  T  *  V  C  *  *  K  F  Y  R  Y  T  F  E  *  *  L  G  G  R  K  E  N  Y  K  I  S  *  N  V  F  *  S  Y  F  E  D  I  W  F  T  I  C  Y  I  K  S  S  F  S  *  N  L  S  S  W  C  L  L  E  S  I  D  I  K  *  R  S  S  F  G  *  N  D  R  K  Y  E  G  E  I  *  Q  I  F  G  V  M  L  K  K  *  I  R  W  F  S  Y  Y  V  F  W  I  L  I  T  N  L  V  L  L  A  L  Q  L  R  R  C  L  E  K  K  G  M  L  *  K  M  V  R  E  R  T  W  K  L  C  L  M  S  I  Q  T  P  F  Q  M  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0070F01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31689" stop="31411"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YWLGTILKFVDKNSTGTLLSSDWEGVKRTTKFLEMFFNLTLKIYGSRYVTSNLHFLEIYQVGVYLNQLISNEDQVLAKMTENMKEKFDKYLG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0070F01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31904" stop="31632"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EANVSIERVRQAVRYIRQSPARWKIFQECCEDENLVKKSLCLDVPRRWNSIYMMLSRVIEYEGAIVEYADRDIGLALYLSLLIKILQVHF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0070F01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31439" stop="31227"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRNLTNIWGDAEKMNKMVFILCVLDPHHKFSTLGFAIKKMFGEKGDAIENGARTYMEALFNEYTNPISNDK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="42616" PGL_stop="43563"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42616" e_stop="42737"/>
            <exon e_start="42847" e_stop="42939"/>
            <exon e_start="43028" e_stop="43177"/>
            <exon e_start="43265" e_stop="43351"/>
            <exon e_start="43455" e_stop="43563"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.831" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42616" e_stop="42737" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.831" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42738" i_stop="42846" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42847" e_stop="42939" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42940" i_stop="43027" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43028" e_stop="43177" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43178" i_stop="43264" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43265" e_stop="43351" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43352" i_stop="43454" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43455" e_stop="43563" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42616" stop="42737"/>
              <exon start="42847" stop="42939"/>
              <exon start="43028" stop="43177"/>
              <exon start="43265" stop="43351"/>
              <exon start="43455" stop="43563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTATGGAGAGAGTCCAAAGCAATGGGCAATGGTCTTTATTTTGTCCAAGTGAGGCTCCTGGATTGGCAGATTGCTGGGGTGATGATTTTGAGAAGCTGTATTCGAAGTATGAAAGAGAG : GGTAAGGCTAAGAAGGTTGTGCAAGCACAAAATCTCTGGTTTGAGATCTTGAAGTCTCAGATAGAAACTGGGACCCCATACATGCTATATAAG : GATACTTGTAACAGAAAAAGCAACCAGCAGAATCTTGGCACAATCAAGTCTTCTAACTTGTGTACTGAAATTATTGAATACACAAGTCCTACTGAAACTGCTGTGTGCAATCTTGCCTCAATTGCTCTTCCACGATATGTTAGAGAGAAG : GAGGTTCCTAGTGAATCACAACCATCTAAGCTTGTTGGGAGCAGAGGCGCTAAAAACCGGTACTTTGATTTTGACAAACTGGCAGAG : GTCACTGCATTGGTGACTACAAACCTGAACAAAATTATTGATGTCAACTACTACCCTGTTGAAACTGCAAAAAGGTCTAATTTACGACATAGACCTATTGGACTTGGGG</gDNA_template>
            <first_frame> F  L  W  R  E  S  K  A  M  G  N  G  L  Y  F  V  Q  V  R  L  L  D  W  Q  I  A  G  V  M  I  L  R  S  C  I  R  S  M  K  E  R :   V  R  L  R  R  L  C  K  H  K  I  S  G  L  R  S  *  S  L  R  *  K  L  G  P  H  T  C  Y  I  R :   I  L  V  T  E  K  A  T  S  R  I  L  A  Q  S  S  L  L  T  C  V  L  K  L  L  N  T  Q  V  L  L  K  L  L  C  A  I  L  P  Q  L  L  F  H  D  M  L  E  R  R :   R  F  L  V  N  H  N  H  L  S  L  L  G  A  E  A  L  K  T  G  T  L  I  L  T  N  W  Q  R :   S  L  H  W  *  L  Q  T  *  T  K  L  L  M  S  T  T  T  L  L  K  L  Q  K  G  L  I  Y  D  I  D  L  L  D  L  G </first_frame>
            <second_frame>  F  Y  G  E  S  P  K  Q  W  A  M  V  F  I  L  S  K  *  G  S  W  I  G  R  L  L  G  *  *  F  *  E  A  V  F  E  V  *  K  R   : G  *  G  *  E  G  C  A  S  T  K  S  L  V  *  D  L  E  V  S  D  R  N  W  D  P  I  H  A  I  *   : G  Y  L  *  Q  K  K  Q  P  A  E  S  W  H  N  Q  V  F  *  L  V  Y  *  N  Y  *  I  H  K  S  Y  *  N  C  C  V  Q  S  C  L  N  C  S  S  T  I  C  *  R  E   : G  G  S  *  *  I  T  T  I  *  A  C  W  E  Q  R  R  *  K  P  V  L  *  F  *  Q  T  G  R   : G  H  C  I  G  D  Y  K  P  E  Q  N  Y  *  C  Q  L  L  P  C  *  N  C  K  K  V  *  F  T  T  *  T  Y  W  T  W   </second_frame>
            <third_frame>   F  M  E  R  V  Q  S  N  G  Q  W  S  L  F  C  P  S  E  A  P  G  L  A  D  C  W  G  D  D  F  E  K  L  Y  S  K  Y  E  R  E  :  G  K  A  K  K  V  V  Q  A  Q  N  L  W  F  E  I  L  K  S  Q  I  E  T  G  T  P  Y  M  L  Y  K  :  D  T  C  N  R  K  S  N  Q  Q  N  L  G  T  I  K  S  S  N  L  C  T  E  I  I  E  Y  T  S  P  T  E  T  A  V  C  N  L  A  S  I  A  L  P  R  Y  V  R  E  K  :  E  V  P  S  E  S  Q  P  S  K  L  V  G  S  R  G  A  K  N  R  Y  F  D  F  D  K  L  A  E  :  V  T  A  L  V  T  T  N  L  N  K  I  I  D  V  N  Y  Y  P  V  E  T  A  K  R  S  N  L  R  H  R  P  I  G  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0070F01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42618" stop="42737"/>
                    <exon start="42847" stop="42939"/>
                    <exon start="43028" stop="43177"/>
                    <exon start="43265" stop="43351"/>
                    <exon start="43455" stop="43562"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMERVQSNGQWSLFCPSEAPGLADCWGDDFEKLYSKYEREGKAKKVVQAQNLWFEILKSQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVREKEVPSESQPSKLVGSRGAKNRYFDFDKLAEVTALVTTNLNKIIDVNYYPVETAKRSNLRHRPIGLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="43775" PGL_stop="45510"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43775" e_stop="43816"/>
            <exon e_start="44115" e_stop="44317"/>
            <exon e_start="44404" e_stop="44553"/>
            <exon e_start="44638" e_stop="44785"/>
            <exon e_start="44942" e_stop="45025"/>
            <exon e_start="45111" e_stop="45510"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43775" e_stop="43816" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43817" i_stop="44114" i_length="298"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44115" e_stop="44317" e_length="203"/>
          </exon>
          <intron i_serial="2" don_prob="0.930" acc_prob="0.992">
            <gDNA_intron_boundary i_start="44318" i_stop="44403" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44404" e_stop="44553" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.895">
            <gDNA_intron_boundary i_start="44554" i_stop="44637" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44638" e_stop="44785" e_length="148"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.988">
            <gDNA_intron_boundary i_start="44786" i_stop="44941" i_length="156"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44942" e_stop="45025" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="45026" i_stop="45110" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45111" e_stop="45510" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43775" stop="43816"/>
              <exon start="44115" stop="44317"/>
              <exon start="44404" stop="44553"/>
              <exon start="44638" stop="44785"/>
              <exon start="44942" stop="45025"/>
              <exon start="45111" stop="45170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45168" stop="45510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343725" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGCCCATATGAGACATATGCAGGAAGTCCAGTAAGCAAG : GGTATTGTCCAGCCAGACATGTGGGGAGTAACACCCTCAGATCGATGGGATTGGGGTATTCTCCGTGAAATGATTGCAAAAGATGGTGTAAGAAACTCACTTCTTGTAGCTCCAATGCCAACTGCTTCAACTAGCCAAATTCTTGGAAACAATGAATGCTTTGAACCATACACATCCAATATCTACAGCAGAAGAGTTCTAAG : TGGTGAATTTGTTGTGGTGAACAAGCATCTTCTTCATGACTTAACTGAGATGGGTCTTTGGAATCCTACCCTCAAGAATAGGATAATTTATGATGATGGTTCTGTGCAGAAAATCCCTGAAGTTCCAAATGATCTTAAACTCATATACAA : GACTGTTTGGGAGATCAAGCAACGGAACTTGGTTGATATGGCTGTAGACCGTGGATGCTACATTGATCAAAGCCAGAGTCTCAACATCCATATGGACCAACCCAATTTTGGAAAGCTTACATCCCTGCATTTTCATACTTGGTCCAGG : GGTTTAAAAACAGGAATGTACTATCTAAGATCACGCGCAGCAGCAGATGCAATCAAGTTCACAGTTGATACTTCCATCCTGAAG : GAAAAACCAGTGACTCCAGTTGATGAAGAAACTAAAATGGCCCAGATGGTGTGTTCTTTGAGTAACCGTGACGAGTGTATGGCTTGTGGAAGTTAGATGCTCCTATGCAGATAACCAGAAGCATTTTGAACTTTTGGCTTTTGTTATTTATCTCTCCCTGCCTGCTGGGAGAGCTTAGTATCAATATGCCATATCGAGACATGGCTAGTATTAATGTCCCTGGTTTAATTCTTTGTACATATATTAGGTTATAGTATCATCATGCTATTACTACCAAGTATTTTCCTTATATTAGTTAATGGTAAACTTGATGAGTCGATCCATCTAAGCGTTTGAATTTATCTTAATGTAACAGTGATGACATTGTGTTAATGCCAAGAAAAACAGATCTGGAATGCCT</gDNA_template>
            <first_frame> E  G  P  Y  E  T  Y  A  G  S  P  V  S  K  :  G  I  V  Q  P  D  M  W  G  V  T  P  S  D  R  W  D  W  G  I  L  R  E  M  I  A  K  D  G  V  R  N  S  L  L  V  A  P  M  P  T  A  S  T  S  Q  I  L  G  N  N  E  C  F  E  P  Y  T  S  N  I  Y  S  R  R  V  L  S :   G  E  F  V  V  V  N  K  H  L  L  H  D  L  T  E  M  G  L  W  N  P  T  L  K  N  R  I  I  Y  D  D  G  S  V  Q  K  I  P  E  V  P  N  D  L  K  L  I  Y  K :   T  V  W  E  I  K  Q  R  N  L  V  D  M  A  V  D  R  G  C  Y  I  D  Q  S  Q  S  L  N  I  H  M  D  Q  P  N  F  G  K  L  T  S  L  H  F  H  T  W  S  R  :  G  L  K  T  G  M  Y  Y  L  R  S  R  A  A  A  D  A  I  K  F  T  V  D  T  S  I  L  K  :  E  K  P  V  T  P  V  D  E  E  T  K  M  A  Q  M  V  C  S  L  S  N  R  D  E  C  M  A  C  G  S  *  M  L  L  C  R  *  P  E  A  F  *  T  F  G  F  C  Y  L  S  L  P  A  C  W  E  S  L  V  S  I  C  H  I  E  T  W  L  V  L  M  S  L  V  *  F  F  V  H  I  L  G  Y  S  I  I  M  L  L  L  P  S  I  F  L  I  L  V  N  G  K  L  D  E  S  I  H  L  S  V  *  I  Y  L  N  V  T  V  M  T  L  C  *  C  Q  E  K  Q  I  W  N  A  </first_frame>
            <second_frame>  K  A  H  M  R  H  M  Q  E  V  Q  *  A  R :   V  L  S  S  Q  T  C  G  E  *  H  P  Q  I  D  G  I  G  V  F  S  V  K  *  L  Q  K  M  V  *  E  T  H  F  L  *  L  Q  C  Q  L  L  Q  L  A  K  F  L  E  T  M  N  A  L  N  H  T  H  P  I  S  T  A  E  E  F  *   : V  V  N  L  L  W  *  T  S  I  F  F  M  T  *  L  R  W  V  F  G  I  L  P  S  R  I  G  *  F  M  M  M  V  L  C  R  K  S  L  K  F  Q  M  I  L  N  S  Y  T   : R  L  F  G  R  S  S  N  G  T  W  L  I  W  L  *  T  V  D  A  T  L  I  K  A  R  V  S  T  S  I  W  T  N  P  I  L  E  S  L  H  P  C  I  F  I  L  G  P  G :   V  *  K  Q  E  C  T  I  *  D  H  A  Q  Q  Q  M  Q  S  S  S  Q  L  I  L  P  S  *  R :   K  N  Q  *  L  Q  L  M  K  K  L  K  W  P  R  W  C  V  L  *  V  T  V  T  S  V  W  L  V  E  V  R  C  S  Y  A  D  N  Q  K  H  F  E  L  L  A  F  V  I  Y  L  S  L  P  A  G  R  A  *  Y  Q  Y  A  I  S  R  H  G  *  Y  *  C  P  W  F  N  S  L  Y  I  Y  *  V  I  V  S  S  C  Y  Y  Y  Q  V  F  S  L  Y  *  L  M  V  N  L  M  S  R  S  I  *  A  F  E  F  I  L  M  *  Q  *  *  H  C  V  N  A  K  K  N  R  S  G  M  P </second_frame>
            <third_frame>   R  P  I  *  D  I  C  R  K  S  S  K  Q   : G  Y  C  P  A  R  H  V  G  S  N  T  L  R  S  M  G  L  G  Y  S  P  *  N  D  C  K  R  W  C  K  K  L  T  S  C  S  S  N  A  N  C  F  N  *  P  N  S  W  K  Q  *  M  L  *  T  I  H  I  Q  Y  L  Q  Q  K  S  S  K  :  W  *  I  C  C  G  E  Q  A  S  S  S  *  L  N  *  D  G  S  L  E  S  Y  P  Q  E  *  D  N  L  *  *  W  F  C  A  E  N  P  *  S  S  K  *  S  *  T  H  I  Q  :  D  C  L  G  D  Q  A  T  E  L  G  *  Y  G  C  R  P  W  M  L  H  *  S  K  P  E  S  Q  H  P  Y  G  P  T  Q  F  W  K  A  Y  I  P  A  F  S  Y  L  V  Q   : G  F  K  N  R  N  V  L  S  K  I  T  R  S  S  R  C  N  Q  V  H  S  *  Y  F  H  P  E   : G  K  T  S  D  S  S  *  *  R  N  *  N  G  P  D  G  V  F  F  E  *  P  *  R  V  Y  G  L  W  K  L  D  A  P  M  Q  I  T  R  S  I  L  N  F  W  L  L  L  F  I  S  P  C  L  L  G  E  L  S  I  N  M  P  Y  R  D  M  A  S  I  N  V  P  G  L  I  L  C  T  Y  I  R  L  *  Y  H  H  A  I  T  T  K  Y  F  P  Y  I  S  *  W  *  T  *  *  V  D  P  S  K  R  L  N  L  S  *  C  N  S  D  D  I  V  L  M  P  R  K  T  D  L  E  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0070F01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43775" stop="43816"/>
                    <exon start="44115" stop="44317"/>
                    <exon start="44404" stop="44553"/>
                    <exon start="44638" stop="44785"/>
                    <exon start="44942" stop="45025"/>
                    <exon start="45111" stop="45206"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGPYETYAGSPVSKGIVQPDMWGVTPSDRWDWGILREMIAKDGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWNPTLKNRIIYDDGSVQKIPEVPNDLKLIYKTVWEIKQRNLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHTWSRGLKTGMYYLRSRAAADAIKFTVDTSILKEKPVTPVDEETKMAQMVCSLSNRDECMACGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="51039" PGL_stop="53096"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51039" e_stop="51527"/>
            <exon e_start="52849" e_stop="53096"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51039" e_stop="51527" e_length="489"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="51528" i_stop="52848" i_length="1321"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="52849" e_stop="53096" e_length="248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51039" stop="51527"/>
              <exon start="52849" stop="53096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51040" stop="51515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228164" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACCTTCTTGAAACCTAATTTGTTTTCTCTTGCGGGGGAAAATGTTCAGTGCATTAGACTGTCTGTCGATATTTAAACTTGTAATTTTATATATAGTAGTAAGTATTTGTTAGTACTATTATATACAATTAGCTTCTTCCTTTTTTTTGTGTGTTACATGTGTAAATTCAAGGTGGCGAATTATAGAAAGAAAGGGAATTATAAGGCAATTATAAGAGATGATGAAGAAGAAGAAAGTGGGATTAATAATAATGATAATATTAATGTGATGTTTTCTGGGAATATTAATAGAGAAGAAGAGATGTCTATGATGGTTACTGCACTGACACGTGTCATTACTGGTGAAGATAGAATATTAAATCAAGAAAATAATAATAATAATATTATTGGTTCTTCATCTTTGAATGAATTTTCTGGAGGCGTTGGAGAAAAAAGAGGACGTGAAGAGCAGCAATATTTCTTGTCTGATATTATTAGTTCATCAAAAG : TTGGTGAAGATTCAAGCATTAATAGAACTATTGCAAGCAACACACCAACAACAGAAGCAACATTCATATACACTACTCCAACATATGATCATAATAACAACACCAATATTATTGATTGTGATCAACCAAGAAGAAGATATAGAGGAGTGAGACAAAGGCCATGGGGAAAATGGGCTGCTGAAATTAGAGATCCATACAAAGCTGCTAGGGTTTGGCTCGGAACATTCGATACTGCTGAAGATGCTGCT</gDNA_template>
            <first_frame> Q  P  S  *  N  L  I  C  F  L  L  R  G  K  M  F  S  A  L  D  C  L  S  I  F  K  L  V  I  L  Y  I  V  V  S  I  C  *  Y  Y  Y  I  Q  L  A  S  S  F  F  L  C  V  T  C  V  N  S  R  W  R  I  I  E  R  K  G  I  I  R  Q  L  *  E  M  M  K  K  K  K  V  G  L  I  I  M  I  I  L  M  *  C  F  L  G  I  L  I  E  K  K  R  C  L  *  W  L  L  H  *  H  V  S  L  L  V  K  I  E  Y  *  I  K  K  I  I  I  I  I  L  L  V  L  H  L  *  M  N  F  L  E  A  L  E  K  K  E  D  V  K  S  S  N  I  S  C  L  I  L  L  V  H  Q  K  :  L  V  K  I  Q  A  L  I  E  L  L  Q  A  T  H  Q  Q  Q  K  Q  H  S  Y  T  L  L  Q  H  M  I  I  I  T  T  P  I  L  L  I  V  I  N  Q  E  E  D  I  E  E  *  D  K  G  H  G  E  N  G  L  L  K  L  E  I  H  T  K  L  L  G  F  G  S  E  H  S  I  L  L  K  M  L   </first_frame>
            <second_frame>  N  L  L  E  T  *  F  V  F  S  C  G  G  K  C  S  V  H  *  T  V  C  R  Y  L  N  L  *  F  Y  I  *  *  *  V  F  V  S  T  I  I  Y  N  *  L  L  P  F  F  C  V  L  H  V  *  I  Q  G  G  E  L  *  K  E  R  E  L  *  G  N  Y  K  R  *  *  R  R  R  K  W  D  *  *  *  *  *  Y  *  C  D  V  F  W  E  Y  *  *  R  R  R  D  V  Y  D  G  Y  C  T  D  T  C  H  Y  W  *  R  *  N  I  K  S  R  K  *  *  *  *  Y  Y  W  F  F  I  F  E  *  I  F  W  R  R  W  R  K  K  R  T  *  R  A  A  I  F  L  V  *  Y  Y  *  F  I  K  S :   W  *  R  F  K  H  *  *  N  Y  C  K  Q  H  T  N  N  R  S  N  I  H  I  H  Y  S  N  I  *  S  *  *  Q  H  Q  Y  Y  *  L  *  S  T  K  K  K  I  *  R  S  E  T  K  A  M  G  K  M  G  C  *  N  *  R  S  I  Q  S  C  *  G  L  A  R  N  I  R  Y  C  *  R  C  C  </second_frame>
            <third_frame>   T  F  L  K  P  N  L  F  S  L  A  G  E  N  V  Q  C  I  R  L  S  V  D  I  *  T  C  N  F  I  Y  S  S  K  Y  L  L  V  L  L  Y  T  I  S  F  F  L  F  F  V  C  Y  M  C  K  F  K  V  A  N  Y  R  K  K  G  N  Y  K  A  I  I  R  D  D  E  E  E  E  S  G  I  N  N  N  D  N  I  N  V  M  F  S  G  N  I  N  R  E  E  E  M  S  M  M  V  T  A  L  T  R  V  I  T  G  E  D  R  I  L  N  Q  E  N  N  N  N  N  I  I  G  S  S  S  L  N  E  F  S  G  G  V  G  E  K  R  G  R  E  E  Q  Q  Y  F  L  S  D  I  I  S  S  S  K   : V  G  E  D  S  S  I  N  R  T  I  A  S  N  T  P  T  T  E  A  T  F  I  Y  T  T  P  T  Y  D  H  N  N  N  T  N  I  I  D  C  D  Q  P  R  R  R  Y  R  G  V  R  Q  R  P  W  G  K  W  A  A  E  I  R  D  P  Y  K  A  A  R  V  W  L  G  T  F  D  T  A  E  D  A  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0070F01.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51116" stop="51527"/>
                    <exon start="52849" stop="53096"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCNFIYSSKYLLVLLYTISFFLFFVCYMCKFKVANYRKKGNYKAIIRDDEEEESGINNNDNINVMFSGNINREEEMSMMVTALTRVITGEDRILNQENNNNNIIGSSSLNEFSGGVGEKRGREEQQYFLSDIISSSKVGEDSSINRTIASNTPTTEATFIYTTPTYDHNNNTNIIDCDQPRRRYRGVRQRPWGKWAAEIRDPYKAARVWLGTFDTAEDAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="53169" PGL_stop="53856"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53169" e_stop="53856"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="53169" e_stop="53856" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53169" stop="53856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53169" stop="53819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53169" stop="53815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53170" stop="53729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53458" stop="53842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTGCCTACTTCTTCAATGGAAAAAGGGTCTCTGACAAACACATTTCCCTCAAACTCCGTGGAAAGTAACTTGGAATTTTTGACGAAGAAAAAAGTTCTGACAAGCACATTTCCTGCAGAAAATAATATGGTATTTTCAACAGAAAGACAGTTTATGACGGACACATTTCCCACGGAATATGTACCTGTTTCTAGTATTATTTCTCCTAATACTTCTCCAAATACTCTTTCAACAATCTCTTTTTTCCCTAATAGTAATCCAATAGCTCACACTCAGTTATCTAATAGCAATAGTGATGACATAAACACTCAATATTTCTTGAATGGTGATTTTCAAAGGGGCAATTCATCTCTAAGTTTGTTAAACCAATCCATGTTTTCTACAACATTCCAGTATTCTTCTTCTTCTCCATCATCGTCTTCTTCTTCTCGAGTTCCTTTTGTTCCGAGTATGTATTTTTCAGGTTCTCAACCTACTAGCCAGAGTAGTGAAAATGATTTTCGGGCTACTTCGTCAGATTCAGCTCATCACCCTCCAAAATGATCTAGTAGAAGTGACTAGTTAGGGTTTTATGTTTATCATATAAATGTGATATATGAAAGGATTGCGCGTGTAGGTGGACAAAGTCCCCTTTTTTGGTGATATTGTTGTGGTAGATTATAAAATGAGAGGTATTTTTGGAAAT</gDNA_template>
            <first_frame> L  L  P  T  S  S  M  E  K  G  S  L  T  N  T  F  P  S  N  S  V  E  S  N  L  E  F  L  T  K  K  K  V  L  T  S  T  F  P  A  E  N  N  M  V  F  S  T  E  R  Q  F  M  T  D  T  F  P  T  E  Y  V  P  V  S  S  I  I  S  P  N  T  S  P  N  T  L  S  T  I  S  F  F  P  N  S  N  P  I  A  H  T  Q  L  S  N  S  N  S  D  D  I  N  T  Q  Y  F  L  N  G  D  F  Q  R  G  N  S  S  L  S  L  L  N  Q  S  M  F  S  T  T  F  Q  Y  S  S  S  S  P  S  S  S  S  S  S  R  V  P  F  V  P  S  M  Y  F  S  G  S  Q  P  T  S  Q  S  S  E  N  D  F  R  A  T  S  S  D  S  A  H  H  P  P  K  *  S  S  R  S  D  *  L  G  F  Y  V  Y  H  I  N  V  I  Y  E  R  I  A  R  V  G  G  Q  S  P  L  F  W  *  Y  C  C  G  R  L  *  N  E  R  Y  F  W  K  </first_frame>
            <second_frame>  S  C  L  L  L  Q  W  K  K  G  L  *  Q  T  H  F  P  Q  T  P  W  K  V  T  W  N  F  *  R  R  K  K  F  *  Q  A  H  F  L  Q  K  I  I  W  Y  F  Q  Q  K  D  S  L  *  R  T  H  F  P  R  N  M  Y  L  F  L  V  L  F  L  L  I  L  L  Q  I  L  F  Q  Q  S  L  F  S  L  I  V  I  Q  *  L  T  L  S  Y  L  I  A  I  V  M  T  *  T  L  N  I  S  *  M  V  I  F  K  G  A  I  H  L  *  V  C  *  T  N  P  C  F  L  Q  H  S  S  I  L  L  L  L  H  H  R  L  L  L  L  E  F  L  L  F  R  V  C  I  F  Q  V  L  N  L  L  A  R  V  V  K  M  I  F  G  L  L  R  Q  I  Q  L  I  T  L  Q  N  D  L  V  E  V  T  S  *  G  F  M  F  I  I  *  M  *  Y  M  K  G  L  R  V  *  V  D  K  V  P  F  F  G  D  I  V  V  V  D  Y  K  M  R  G  I  F  G  N </second_frame>
            <third_frame>   L  A  Y  F  F  N  G  K  R  V  S  D  K  H  I  S  L  K  L  R  G  K  *  L  G  I  F  D  E  E  K  S  S  D  K  H  I  S  C  R  K  *  Y  G  I  F  N  R  K  T  V  Y  D  G  H  I  S  H  G  I  C  T  C  F  *  Y  Y  F  S  *  Y  F  S  K  Y  S  F  N  N  L  F  F  P  *  *  *  S  N  S  S  H  S  V  I  *  *  Q  *  *  *  H  K  H  S  I  F  L  E  W  *  F  S  K  G  Q  F  I  S  K  F  V  K  P  I  H  V  F  Y  N  I  P  V  F  F  F  F  S  I  I  V  F  F  F  S  S  S  F  C  S  E  Y  V  F  F  R  F  S  T  Y  *  P  E  *  *  K  *  F  S  G  Y  F  V  R  F  S  S  S  P  S  K  M  I  *  *  K  *  L  V  R  V  L  C  L  S  Y  K  C  D  I  *  K  D  C  A  C  R  W  T  K  S  P  F  L  V  I  L  L  W  *  I  I  K  *  E  V  F  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0070F01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53169" stop="53714"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLPTSSMEKGSLTNTFPSNSVESNLEFLTKKKVLTSTFPAENNMVFSTERQFMTDTFPTEYVPVSSIISPNTSPNTLSTISFFPNSNPIAHTQLSNSNSDDINTQYFLNGDFQRGNSSLSLLNQSMFSTTFQYSSSSPSSSSSSRVPFVPSMYFSGSQPTSQSSENDFRATSSDSAHHPPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="76865" PGL_stop="77291"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76865" e_stop="77291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="76865" e_stop="77291" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76865" stop="77291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76868" stop="77291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGGGGAAAGCCTGAAAAAGTTATTTCACCAATTTCAACAAGTAATCCACCAATTAAAAACATGTTTTTTTTGATGGCTGATAAAAATAGAGATGGAGTGAATCTAACATGTAGCATGAAGAAACAAGACATGTTAGCTTTTGAGAGGGATGAAGAGCTCTTACGATTTGCCTCTCCAACTAGCTAAATCAATCGTACTCACAGCCAGAGTAATATCGTGGTGAGTTGTGTGAAATAAAAGAGTGTTAGCTTGTTTTGAAGGTGTGGTAGTAGTCTCTTCATGACACTATCAAGTTGTAACACTTTTTACTCCGTTAAAAGATATTTGGTATTGTTGTTACTCTATTGTTCTAGTCAGATTCTACAAAATTTTCTCCAAGGAGCTTGATAGAATGATTATTTTGAATTTTTAAAAATATTGAAAGA</gDNA_template>
            <first_frame> D  G  E  S  L  K  K  L  F  H  Q  F  Q  Q  V  I  H  Q  L  K  T  C  F  F  *  W  L  I  K  I  E  M  E  *  I  *  H  V  A  *  R  N  K  T  C  *  L  L  R  G  M  K  S  S  Y  D  L  P  L  Q  L  A  K  S  I  V  L  T  A  R  V  I  S  W  *  V  V  *  N  K  R  V  L  A  C  F  E  G  V  V  V  V  S  S  *  H  Y  Q  V  V  T  L  F  T  P  L  K  D  I  W  Y  C  C  Y  S  I  V  L  V  R  F  Y  K  I  F  S  K  E  L  D  R  M  I  I  L  N  F  *  K  Y  *  K  </first_frame>
            <second_frame>  M  G  K  A  *  K  S  Y  F  T  N  F  N  K  *  S  T  N  *  K  H  V  F  F  D  G  *  *  K  *  R  W  S  E  S  N  M  *  H  E  E  T  R  H  V  S  F  *  E  G  *  R  A  L  T  I  C  L  S  N  *  L  N  Q  S  Y  S  Q  P  E  *  Y  R  G  E  L  C  E  I  K  E  C  *  L  V  L  K  V  W  *  *  S  L  H  D  T  I  K  L  *  H  F  L  L  R  *  K  I  F  G  I  V  V  T  L  L  F  *  S  D  S  T  K  F  S  P  R  S  L  I  E  *  L  F  *  I  F  K  N  I  E  R </second_frame>
            <third_frame>   W  G  K  P  E  K  V  I  S  P  I  S  T  S  N  P  P  I  K  N  M  F  F  L  M  A  D  K  N  R  D  G  V  N  L  T  C  S  M  K  K  Q  D  M  L  A  F  E  R  D  E  E  L  L  R  F  A  S  P  T  S  *  I  N  R  T  H  S  Q  S  N  I  V  V  S  C  V  K  *  K  S  V  S  L  F  *  R  C  G  S  S  L  F  M  T  L  S  S  C  N  T  F  Y  S  V  K  R  Y  L  V  L  L  L  L  Y  C  S  S  Q  I  L  Q  N  F  L  Q  G  A  *  *  N  D  Y  F  E  F  L  K  I  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0070F01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 228 chains have been computed
$ 
$ memory statistics:
$ 96536 bytes spliced alignments in total
$ 51 spliced alignments have been stored
$ 1892 bytes was the average size of a spliced alignment
$ 14752 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1844 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 237 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-05 08:42:52
-->
