<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-26 19:21:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0075G11-09LFt/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-ya9v2C/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ya9v2C/sgn_marker_seqs" ref_id="SGN-M8940-2" ref_strand="+" ref_description="SGN-M8940-2 C2_At5g42950-2 [cosii_markers]">
      <seq>ctaaaaagagccgcaaaagatctgcaaaatctaagggtgcaggagcgaaggtctcagtgcccactgctgcttctgaggtgtctattgcatcaagtcctattgacaaagtcaaaagctcgcgtcaggtacaacctgaccaggaagtattacctgctataccatctggtccttcgctaggagattttgttgtttggaagggcgagtctgcaagttcttctcctattcctgttccagcatggtccactgatgctgggaaaccctcaaaacccacatccttacgggacatcctaaaggaacaagaaaagaaggtttcttctggacagcagcatataccagtgccaacacagaaatctgtgccaaatccacctgccagagtaggtggtccatcatggtctgccactggttcatcgcccaccaaggcatctcctattcagatcaactcacaagctggcactaattcaaaaaataaagtggaggatgatttgttttggggcccaatagatcatcccaagcaagaggcaaagcagtctgaatatcctcagcttggaagtcaaggcagttggggaagcaagaccacaccagtgaaaggaagccctggcggttcattgagcaggcagaagtctgttagcggtaagcctgtagaacgtttactatcctcatctcctgcatcagctcactcgtccctgaaagggaagaaggatgctttaacaaagcattcagaagcaatggatttcagagagtggtgtgagaatgaatgtgataggctcattggtactagagatactagctttctggacttctgtttcaagcaatccaagtcagaggctgaaattcttctgatagagaatcttggctcttatgatcctgatcatgagttcattgacaagttccttaactacaaagactttttgcctgcggatgtttttgacatggccttccagggtcggaatgatcgtaaggtcactggtgcaagtgccaaagatgtgacttctaacagtgttggctttgaccaaggtaactcaagtgttcaggattgggccccaaaaggaggaaagaagaagggtaggaaggggaagaaggttaacctttcagagttgggcttcaatgtggttagtaaccgtataatgatgggagagattcagactgtggaagactaggtagaatgangaatggtacatactttgtgtttgagaaatggtttgtaatgctttaggattatcccagcacagaagcagtactatttaatctgctcaaagcaatttttgtgatgctnattatgactttaggtctttctaatcagatttatcngaattaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-09LFt/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="57715" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57415" g_stop="56893" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56892" i_stop="56804" i_length="89">
            <donor d_prob="0.138" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56803" g_stop="56610" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="720" r_length="194" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56609" i_stop="56506" i_length="104">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56505" g_stop="56446" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="780" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56445" i_stop="56232" i_length="214">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56231" g_stop="55693" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="1319" r_length="539" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-M8940-2" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>1316</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8940-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57415" e_stop="56893"/>
          <exon e_start="56803" e_stop="56610"/>
          <exon e_start="56505" e_stop="56446"/>
          <exon e_start="56231" e_stop="55693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAGTCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTTCATCATGGTCT---A---GTTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTCAAAGCAGTACGGCAATTTACTTCCTCATCATCTCTTCTCCTCTCTCTCTCTTTCTCTTGATAAATTCCTCCTTTTTGTTGGTTGTAATCCTGCAGATCTGAATATCCTCAGCTTGGAAGTCAAGGCAGTTGGGGAAGCAAGACCACACCAGTGAAAGGAAGTCCTGGTGGTTCATTGAGCAGGCAAAAGTCTGTCAGCAGTAAGCCTGCAGAACGTCTACTATCCTCATCTCCTGCGTCAGGTCACTCGTCCCTGAAAGGGAAGAAGGATGCTTTGACAAAGCATTCAGGTAACCATTTGTTTTTTAAGAACTAATCAAAGATCTAAAGTAAACATTGTTTCTCAGCGGAAAAAGAAAAAAAAATATTAACACAATTTTCTTCTTTGTTTCAGAAGCAATGGATTTCAGAGAATGGTGTGAGAATGAATGTGATAGGCTCATTGGTACAAGAGGTATTTTTTAGAATTATCTCTCTTCTGGAATACTTTATTGCTCACTTGATTTAGATCTCTCTTCTGGAATACTTTATCACCCCATATATTTTGAATTGTGTCGGTAGTTGAGGAATTTCTCAAGTCCTACACTTTGACTGATGCTGAGAGTATCTACGTAGGACTATGCTGACAGTTTGTCTGATGTTTTCCCAAATTATTTTTGTTCATTCAGATACCAGCTTTCTGGACTTCTGTTTCAAGCAATCCAAGTCAGAGGCTGAAATGCTTCTGATAGAGAATCTTGGCTCTTATGATCCTGATCATGAATTCATTGACAAGTTCCTCAACTACAAAGACTTTTTGCCTGCGGATGTTTTTGACATGGCCTTCCAGGGTCGTAATGATCGTAAGGTCACTGGTGCAAGTGCCAAAAATGTGACTTCTAACAGTGTTGGCTTTGACCAGGGCAACTCAAGTGTTCAGGATTGGGCCTCAAAGGGAGGAAAGAAGAAGGGTAAGAAGGGCAAGAAGGTTAACCTTTCAGAGTTGGGCTTCAATGTGGTTAGCAACCGGATAATGATGGGAGAGATTCAGACTGTAGAAGATTAGGTAGAATGAGGGAGGGTACATACTTTGTGTTTGAG-AAT-GTTTGTAAATGCTTTAGGATTAT-CCAGCAACAGAAGCAGTACTATTTAATCTGCTCAAAGCAATTTTTGTGATACTATTTCTGACTTTAGGTCTTCTAAATCAGATTCAATCAGAATTAAACCT</genome_strand>
        <mrna_strand>CTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGTGCAGGAGCGAAGGTCTCAGTGCCCACTGCTGCTTCTGAGGTGTCTATTGCATCAAGTCCTATTGACAAAGTCAAAAGCTCGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGCGAGTCTGCAAGTTCTTCTCCTATTCCTGTTCCAGCATGGTCCACTGATGCTGGGAAACCCTCAAAACCCACATCCTTACGGGACATCCTAAAGGAACAAGAAAAGAAGGTTTCTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCCAGAGTAGGTGGTCCATCATGGTCTGCCACTGGTTCATCGCCCACCAA-G--GCATCTCCTATTCAGATCAACTCACAAGCTGGCACTAATTCAAAAAATAAAGTGGAGGATGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGGCAAAGCA.........................................................................................GTCTGAATATCCTCAGCTTGGAAGTCAAGGCAGTTGGGGAAGCAAGACCACACCAGTGAAAGGAAGCCCTGGCGGTTCATTGAGCAGGCAGAAGTCTGTTAGCGGTAAGCCTGTAGAACGTTTACTATCCTCATCTCCTGCATCAGCTCACTCGTCCCTGAAAGGGAAGAAGGATGCTTTAACAAAGCATTCAG........................................................................................................AAGCAATGGATTTCAGAGAGTGGTGTGAGAATGAATGTGATAGGCTCATTGGTACTAGAG......................................................................................................................................................................................................................ATACTAGCTTTCTGGACTTCTGTTTCAAGCAATCCAAGTCAGAGGCTGAAATTCTTCTGATAGAGAATCTTGGCTCTTATGATCCTGATCATGAGTTCATTGACAAGTTCCTTAACTACAAAGACTTTTTGCCTGCGGATGTTTTTGACATGGCCTTCCAGGGTCGGAATGATCGTAAGGTCACTGGTGCAAGTGCCAAAGATGTGACTTCTAACAGTGTTGGCTTTGACCAAGGTAACTCAAGTGTTCAGGATTGGGCCCCAAAAGGAGGAAAGAAGAAGGGTAGGAAGGGGAAGAAGGTTAACCTTTCAGAGTTGGGCTTCAATGTGGTTAGTAACCGTATAATGATGGGAGAGATTCAGACTGTGGAAGACTAGGTAGAATGANGAATGGTACATACTTTGTGTTTGAGAAATGGTTTGT-AATGCTTTAGGATTATCCCAGC-ACAGAAGCAGTACTATTTAATCTGCTCAAAGCAATTTTTGTGATGCTNATTATGACTTTAGGTCTTTCTAATCAGATT-TATCNGAATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ya9v2C/sgn_marker_seqs" ref_id="SGN-M8940" ref_strand="+" ref_description="SGN-M8940 C2_At5g42950 [cosii_markers]">
      <seq>gtaggtccaggaagaagagagagcagacccgaagttgctattgctgatgttgtggatgaatatccagggcaaaacccaccaatttcacagtccaacacccaagtacagtctggacagcgagcttggaaacctgctcctggtttcaagccgaagtctttgttggaaattcaagaggaagagcagaggagagcacaagcagaaataactactacagaggtcgccacatctctgagctccttaagtgtgtctactccatgggctggatttgttactaattcagatcataaattagttagagatactcagcaagatgctgccagcactgatttgaatatgaataactcagatgtttctctcgaccagaagactaagaaaagtcaattgcatgacgtactggctgagaacactttggccaagtcaagcgatagagagagagattttcctgatatgacatctgttcaaccttccgtgtctgtcaatgatgataacaactttattgaagctaaagaaactaaaaagagccgcaaaagatctgcaaaatctaagggagcaggagcaaaggcctcaatgcccacagctgcttccgaggtgtctgttgcatcaagtcctattgacaaagtcaaaagcttgcgtcaggtacaacctgaccaggaagtattacctgctataccatctggtccttcgctaggagattttgttgtttggaagggtgaatctgcaagttctgctactattcctgttccagcatggtccaccgactctgggaaaccctcaaaacccacatccttgcgggacatcctaaaggaacaagaaaagaaggttacttctggacagcagcatataccagtgccaacacagaaatctgtgccaaatccacctgcgagagtaggtggttcatcatggtctagttcatcgcccgccaaggctgcatctcctattcagattaactcacaagctggcgcttattcaaaaaataaagtggaggacgatttgttttggggcccaatagatcatcccaagcaagagtcaaagcaatctgaatatcctcagcttggaagtcaaggcagttggggaagcaagaccacaccagtgaaaggaagtcctggtggttcattgagcaggcaaaagtctgtcagcagtaagcctgcagaacgtctactatcctcatctcctgcgttaggtcactcgtccctgaaagggaagaaggatgctttgacaaagcattcagaagcaatggatttcagagaatggtgtgagaatgaatgtgataggctcattggtacaagagataccagctttctggacttctgtttcaagcaatccaagtcaaaggctgaaatgcttctgatagagaatcttggctcttatgatcctgatcatgaattcattgacaagttcctcaactacaaagactttttgcctgcggatgtttttgacatggccttccagggtcgtaatgatcgtaaggtcactggtgcaagtgccaaaaatgtgacttctaacagtgttggctttgaccagggcaactcaagtgttcaggattgggcctcaaagggaggaaagaagaagggtaagaagggcaagaaggttaacctttcagagttgggcttcaatgtggttagcaaccggataatgatgggagagattcagactgtagaagattaggtagaatgagggagggtacatactttgtgtttgagaatgtttgtaaatgctttaggattatctagcaacagaagcagtactatttaatctgctcaaagcaatttttgtgatactatttctgactttaggtcttctnnannnnnanaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-09LFt/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="58226" stop="55420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57926" g_stop="56893" g_length="1034"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1034" r_length="1034" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56892" i_stop="56804" i_length="89">
            <donor d_prob="0.138" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56803" g_stop="56610" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1035" r_stop="1228" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56609" i_stop="56506" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56505" g_stop="56446" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1229" r_stop="1288" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56445" i_stop="56232" i_length="214">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56231" g_stop="55713" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1289" r_stop="1807" r_length="519" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1809" polyA_stop="1827"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-M8940" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1807</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57926" e_stop="56893"/>
          <exon e_start="56803" e_stop="56610"/>
          <exon e_start="56505" e_stop="56446"/>
          <exon e_start="56231" e_stop="55713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGTCCAGGAAGAAGAGAGAGCAGACCCGAAGTTGCTATTGCTGATGTTGTGGATGAATATCCAGGGCAAAACCCACCAATTTCACAGTCCAACACCCAAGTACAGTCTGGACAGCGAGCTTGGAAACCTGCTCCTGGTTTCAAGCCGAAGTCATTGTTGGAAATTCAAGAGGAAGAGCAGAGGAGAGCACAAGCAGAAATAACTACTACAGAGGTCGCCACATCTCTGAGCTCCTTAAGTGTGTCTACTCCATGGGCTGGATTTGTTACTAATTCAGATCATAAATTAGTTAGAGATACTCAGCAAGATGCTGCCAGCACTGATTTGAATATGAATAACTCAGATGTTTCTCTCGACCAGAAGACTAAGAAAAGTCAATTGCATGACGTACTGGCTGAGAACACTTTGGCCAAGTCAAGCGATAGAGAGAGAGATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATGACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAGTCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTTCATCATGGTCTAGTTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTCAAAGCAGTACGGCAATTTACTTCCTCATCATCTCTTCTCCTCTCTCTCTCTTTCTCTTGATAAATTCCTCCTTTTTGTTGGTTGTAATCCTGCAGATCTGAATATCCTCAGCTTGGAAGTCAAGGCAGTTGGGGAAGCAAGACCACACCAGTGAAAGGAAGTCCTGGTGGTTCATTGAGCAGGCAAAAGTCTGTCAGCAGTAAGCCTGCAGAACGTCTACTATCCTCATCTCCTGCGTCAGGTCACTCGTCCCTGAAAGGGAAGAAGGATGCTTTGACAAAGCATTCAGGTAACCATTTGTTTTTTAAGAACTAATCAAAGATCTAAAGTAAACATTGTTTCTCAGCGGAAAAAGAAAAAAAAATATTAACACAATTTTCTTCTTTGTTTCAGAAGCAATGGATTTCAGAGAATGGTGTGAGAATGAATGTGATAGGCTCATTGGTACAAGAGGTATTTTTTAGAATTATCTCTCTTCTGGAATACTTTATTGCTCACTTGATTTAGATCTCTCTTCTGGAATACTTTATCACCCCATATATTTTGAATTGTGTCGGTAGTTGAGGAATTTCTCAAGTCCTACACTTTGACTGATGCTGAGAGTATCTACGTAGGACTATGCTGACAGTTTGTCTGATGTTTTCCCAAATTATTTTTGTTCATTCAGATACCAGCTTTCTGGACTTCTGTTTCAAGCAATCCAAGTCAGAGGCTGAAATGCTTCTGATAGAGAATCTTGGCTCTTATGATCCTGATCATGAATTCATTGACAAGTTCCTCAACTACAAAGACTTTTTGCCTGCGGATGTTTTTGACATGGCCTTCCAGGGTCGTAATGATCGTAAGGTCACTGGTGCAAGTGCCAAAAATGTGACTTCTAACAGTGTTGGCTTTGACCAGGGCAACTCAAGTGTTCAGGATTGGGCCTCAAAGGGAGGAAAGAAGAAGGGTAAGAAGGGCAAGAAGGTTAACCTTTCAGAGTTGGGCTTCAATGTGGTTAGCAACCGGATAATGATGGGAGAGATTCAGACTGTAGAAGATTAGGTAGAATGAGGGAGGGTACATACTTTGTGTTTGAGAATGTTTGTAAATGCTTTAGGATTATCCAGCAACAGAAGCAGTACTATTTAATCTGCTCAAAGCAATTTTTGTGATACTATTTCTGACTTTAGGTCTTCTAAATCAG</genome_strand>
        <mrna_strand>GTAGGTCCAGGAAGAAGAGAGAGCAGACCCGAAGTTGCTATTGCTGATGTTGTGGATGAATATCCAGGGCAAAACCCACCAATTTCACAGTCCAACACCCAAGTACAGTCTGGACAGCGAGCTTGGAAACCTGCTCCTGGTTTCAAGCCGAAGTCTTTGTTGGAAATTCAAGAGGAAGAGCAGAGGAGAGCACAAGCAGAAATAACTACTACAGAGGTCGCCACATCTCTGAGCTCCTTAAGTGTGTCTACTCCATGGGCTGGATTTGTTACTAATTCAGATCATAAATTAGTTAGAGATACTCAGCAAGATGCTGCCAGCACTGATTTGAATATGAATAACTCAGATGTTTCTCTCGACCAGAAGACTAAGAAAAGTCAATTGCATGACGTACTGGCTGAGAACACTTTGGCCAAGTCAAGCGATAGAGAGAGAGATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATAACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAATCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTTCATCATGGTCTAGTTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTCAAAGCA.........................................................................................ATCTGAATATCCTCAGCTTGGAAGTCAAGGCAGTTGGGGAAGCAAGACCACACCAGTGAAAGGAAGTCCTGGTGGTTCATTGAGCAGGCAAAAGTCTGTCAGCAGTAAGCCTGCAGAACGTCTACTATCCTCATCTCCTGCGTTAGGTCACTCGTCCCTGAAAGGGAAGAAGGATGCTTTGACAAAGCATTCAG........................................................................................................AAGCAATGGATTTCAGAGAATGGTGTGAGAATGAATGTGATAGGCTCATTGGTACAAGAG......................................................................................................................................................................................................................ATACCAGCTTTCTGGACTTCTGTTTCAAGCAATCCAAGTCAAAGGCTGAAATGCTTCTGATAGAGAATCTTGGCTCTTATGATCCTGATCATGAATTCATTGACAAGTTCCTCAACTACAAAGACTTTTTGCCTGCGGATGTTTTTGACATGGCCTTCCAGGGTCGTAATGATCGTAAGGTCACTGGTGCAAGTGCCAAAAATGTGACTTCTAACAGTGTTGGCTTTGACCAGGGCAACTCAAGTGTTCAGGATTGGGCCTCAAAGGGAGGAAAGAAGAAGGGTAAGAAGGGCAAGAAGGTTAACCTTTCAGAGTTGGGCTTCAATGTGGTTAGCAACCGGATAATGATGGGAGAGATTCAGACTGTAGAAGATTAGGTAGAATGAGGGAGGGTACATACTTTGTGTTTGAGAATGTTTGTAAATGCTTTAGGATTATCTAGCAACAGAAGCAGTACTATTTAATCTGCTCAAAGCAATTTTTGTGATACTATTTCTGACTTTAGGTCTTCTNNANNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ya9v2C/sgn_marker_seqs" ref_id="SGN-M2107" ref_strand="+" ref_description="SGN-M2107 T1576 [cos_markers]">
      <seq>gattttcctgatatgacatctgttcaaccttccgtgtctgtcaatgatgatgacaactttattgaagctaaagaaactaaaaagagccgcaaaagatctgcaaaatctaagggagcaggagcaaaggcctcagtgcccacagctgcttccgagatgtctgttgcatcaagtcctattgacaaagtcaaaagcttgcgtcaggtacaacctgaccaggaagtattacctgctataccatctggtccttcgctaggagattttgctgtttggaagggtgagtctgcaagttctgctactattcctgttccagcatggtccaccgactctgggaaaccctcaaaacccacatccttgcgggacatcctaaaggaacaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-09LFt/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="57791" stop="56812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57491" g_stop="57112" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-M2107" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M2107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57491" e_stop="57112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATGACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAGTCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAA</genome_strand>
        <mrna_strand>GATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATGACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAGTGCCCACAGCTGCTTCCGAGATGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGCTGTTTGGAAGGGTGAGTCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ya9v2C/sgn_marker_seqs" ref_id="SGN-M3070" ref_strand="+" ref_description="SGN-M3070 cLED-19-B12 [est_clones]">
      <seq>ttccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-09LFt/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91544" stop="92561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91844" g_stop="92261" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-M3070" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M3070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91844" e_stop="92261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACAC</genome_strand>
        <mrna_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ya9v2C/sgn_marker_seqs" ref_id="SGN-M7055" ref_strand="+" ref_description="SGN-M7055 C2_At1g75200 [cosii_markers]">
      <seq>aggagttaacgataagttcattaatgggaagtcgaatggtggaactgtgaatggagagaaggcaatggtaactccagttattagagcgagtttggagaaacagggatataaaataattggcacgcatagcggtgtgaaactttgtagatggacaaaatcacaacttagagggcgcggaggttgctataagcactcattttatggcattgagagtcacaggtgcatggaggccactcctagtttagcatgtgcaaacaaatgtgttttttgttggagacatcacacaaatcctgttgggaagagctggacatggaagatggatgatcctattgagattgtgaacacagctatagatttgcataccaaaatgataaaacagatgaaaggcgttccaggtgttaaagctgagcgtttgtctgagggtctttctcctaggcattgtgctttgtcactggttggtgagcctattatgtatccagaaataaattcacttgtagatgagctgcacaggaggcggatttcgacttttcttgttactaatgcacagttccctgacaagattaagttattgaaaccaatcacacagttgtatgtcagcgtagatgcaggtacaaaggacagcttaaaagcaattgacagaccactatttggagacttctgggagcgatttcttgattctttgagagctcttaaggagaaggagcaaagaactgtctatcgtttgacactcgttaaagggtggaacacagaagatgtggatgcatattctagcctattcagcattgggaaacccgatttcattgaaatcaaaggtgtcacttattgtggaacgtcggctacatcaaagttgacaatggagaatgtcccttggcattctgatgtgaaggaattctctgaagccttggctaaaaagagcaacggagagtatgaggttgcctgtgagcacgtgcattcctgctgtgttcttctggctaaagtcgataagttcaaaatagacggtcaatggttcacgtggatagactacgagaagttccatgatctggtagcttctgggaaaccctttacaagtaaagattacatgacacccacaccatcttgggctgtctatggagctgaggaaggtggttttgacccagagcaattgcgtttcaaaaaagagcggcaccacagatcatctcgtcaggaaaatggttcttgaaatgttcgaagcaggttttcgttacctctgggatggcctaaaattttgttccttcgacttagattttgctttcctccattttcctatacaagttgcatttcactatataactgcagaagttgtcactgatatgaaaaatattgcttgtatgaacacttttgtatgttgtttcatacacaaattttaattaattttgattatataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-09LFt/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="134860" stop="130526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134560" g_stop="134458" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134457" i_stop="134371" i_length="87">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134370" g_stop="134255" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="219" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134254" i_stop="133093" i_length="1162">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133092" g_stop="132917" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="395" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132916" i_stop="132478" i_length="439">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132477" g_stop="132287" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="586" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="132286" i_stop="132195" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="132194" g_stop="132108" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="673" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="132107" i_stop="131768" i_length="340">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="131767" g_stop="131610" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="831" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="131609" i_stop="131502" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="131501" g_stop="131291" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="832" r_stop="1042" r_length="211" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="131290" i_stop="131188" i_length="103">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.508" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="131187" g_stop="130818" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1043" r_stop="1413" r_length="371" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-M7055" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1412</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134560" e_stop="134458"/>
          <exon e_start="134370" e_stop="134255"/>
          <exon e_start="133092" e_stop="132917"/>
          <exon e_start="132477" e_stop="132287"/>
          <exon e_start="132194" e_stop="132108"/>
          <exon e_start="131767" e_stop="131610"/>
          <exon e_start="131501" e_stop="131291"/>
          <exon e_start="131187" e_stop="130818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTTAACGATAAGTTCGTTAATGGGAAGTCGAATGGTGGAACTGTGAATGGAGAGAAGGCAATGGTAACTCCAGTTATTAGAGCGAGTTTGGAGAAACAGGTATCGTGGTCAAATGACGAACTTTTGTTGTATCAAATTAATTAGTTGGATTTATGGTAAGGTAGTTTATTTGGTGATAAATTGCAGGGATATAAAATAATTGGCACGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTATGGCATTGAGAGTCACAGGTGATTGTTTGTTTTTCTTCCAGCACAGACGGCTATTTATAACTTTTACATTTTTACTATTGCATTCTATCTATGAGTTGTGTAGTCCTTCTTTAATCCTTGGTTGACATAATTGTATTTGAGTTTTTAAAATTCTATGTGTTCAAGTTGCAACTGTGATGAGGTCCAGTTGTTTGGAAGTTTTTTAGGCTGCTAGAATTCTTAGAGTTGATCAAGTATGCGGTGAATAAGAATTTGCATGTGCTTATCCAGAAGAAGGATCTGTTTTTAGAGGCATGTGATATGGAGTAGGAGTAGAATAGTACGGAAACTTTCCATTTTACACAATGAACAACTAGAAATGAGCTGGAATTTTTATTGTGTTCAAATAGGCCCTCAGTGGAAAATCTCCTATTACGTAGCCAATTGAACCGTCTGAAGAGATTACAAAAGTAATCAAGCTTTTATAGCTTTTTTAAGAAGAAATAAGTAAAGGGATTCATTGATGGGTATCAAGTTCAGTAAGTTCAAAAGAGAGTTAGTTCCTATACTTGTCTACTGCCTAAATAGTTATGTTGCTCGGATTCTCCAAAAATTTTGCCATTGGATGCTTCAAAATTGTACTGTTTTTGAATGATCCAACACACACCCATGTTGTAAAAGGCGATCGCCTCGTCGCCAATGGCAAGAGGCGAAGCTAACCTTCATCGCCTTTTAGCTTTGTGGCGAGGCGATCTTCAAAAGGCGACGCCATGACGACAAAAGGCTTGAGGCAAGAGGTGATAAAGGCTAGAAAGGTGTCACCTTTTGTATTTCTTAAAAAAAGGCGACCAATTTAGGGTTTTAAAAGTTAAATGGTAATTTTAGGATTTTCGACCACTCCTCTGGTGACTCCAAAGTCTAACCAATACATATTTCTTCTTTTCTTCTTCAGACTTGAGTCACTTCTACCTTTGTTTTGACTTTTGTTCTCTTTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGTATGTACTATCTATGTTTGAAGAGTCCGAGCAACATAACTTAATAGATCATGAGCTAACAAGAAAAGGTTCTATTGCATTGACCTTTTGTGCATCATTAAGTAGGCTTGATATTTATTGACTTCCTAACCATGTATGCTGATTTTAAATCTGGATTTGCATTTAACCACTGCATAGGTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAGGTTTGTTTTCTGATACACTTGAACATATATGTTTCCGCATGAACTTGTAGGAAAGTTGAGCAATGCCACATTAGAAATAATGTGTTTGATTGAAATCATTTGGTGACTGTATTCAATATGTCTCTGTTTGGTCATTTTGTTGTGTCCGTTCAAGAAAAAGTACCTTGGGTTGAGTTGTGTTTAATTTTGATGCAATGTCCTTCCGATTTCCGAATAAAAAATGGTAAAACTGATACTGCTAACTGTTGGTTCTCCATTTTCTTACCCATTCGCATGAAATGTAGAAGTGGATACAGAATTTTCACAATTTTTTTAATCTGTCTGGATAAAATTGATGTCCTATCCACCGTACATATGCATTTTCTTTATTTTTTAAAAAATAGACGTCCTTCCACTTTCTTGCTTGTAGTGGTTAAGACCGAATATCTCACCCTTGCAGGTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAGGTCTACTAGGCTTTATTCTTCTTTCTTTATCAATGAAGTATGTTGATATCCAAATTCTGAATCTAAATCTCGCTTCATCTTTAAATTTACAGTTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTTGTAAGTGTCTTGAATATAAGATATTTGTCAGATTCAAGCTAAGAAATTAAGGAAAATCCATCAATGGATGGCACAAAGGAATGGGAAAATAGAGTCCAAAAACACAGTTAGGGTTGTTAGCTGCACACTAGTAAACCATAGCAGCGTGTCTCAAACTGATATTTATAATATATCAGTGAGAGGAAAGCTGTAAATTCTTACCTTTACATCAGTGCTAAAAAAGATTCGGCGGCCACGGGAAACTAAATCGAAATTTGCCATGTTTTCTCTGTTTTTTCATATTTGTATGCTACCATTCAGACTGGCTAATTATTGGATTGTGCTATTCGGATTTCATTAGGATTCTTTGAGAGCTCTTAAGGAGAAGGAGCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAACGTAAGTTTTCCCCCTCCCCCTCACTTTTTTCCTTTCCCCTCCCTCTTCTCTTCTACTAGTTTATCCGATTTCAAAGTTCAGTTAAGCAATCAGGGAGGTTTGACACAGGTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAGGTTGCCTGTGAGCATGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCGCTAAGTTCAAAATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTGGTTGGTTACTTCTCTTGTTCATACCTCAGCACGTAAATTATAAGCATACCCTTCCCATTTCAATAGCGTAATCAATGTTTTTTAATCCCATGGCGCGCTACAGGTAGCTTCTGGGAAACCCTTTACAAGTAAAGATTACATGACACCTACACCATCTTGGGCTGTCTATGGAGCTGAGGAAGGTGGTTTTGACCCAGAGCAATTGCGTTTCAAAAAAGAGCGGCACCACAGATCATCTCGTCAGGAAAATGGTTCTTGAAATGTTCGAAGCAGGTTTTCGTTACCTCTGGGATGGCCTAAAATTTTGTTCCTTCGACTTAGATTTTGCTTTCCTCCATTTTCCTATACAAGTTGCATTTCACTATATAACTGCCGAAGTTGTCACTGATATGAAAAATATTGCTTGTATGAACAC-TTTGTATGTTGTTTCATACACAAATTTTAATTAATTTTGATTATATAAAACGATTGGA</genome_strand>
        <mrna_strand>AGGAGTTAACGATAAGTTCATTAATGGGAAGTCGAATGGTGGAACTGTGAATGGAGAGAAGGCAATGGTAACTCCAGTTATTAGAGCGAGTTTGGAGAAACAG.......................................................................................GGATATAAAATAATTGGCACGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTATGGCATTGAGAGTCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAG............................................................................................TTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTT....................................................................................................................................................................................................................................................................................................................................................GATTCTTTGAGAGCTCTTAAGGAGAAGGAGCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAAC............................................................................................................GTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAGGTTGCCTGTGAGCACGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCGATAAGTTCAAAATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTG.......................................................................................................GTAGCTTCTGGGAAACCCTTTACAAGTAAAGATTACATGACACCCACACCATCTTGGGCTGTCTATGGAGCTGAGGAAGGTGGTTTTGACCCAGAGCAATTGCGTTTCAAAAAAGAGCGGCACCACAGATCATCTCGTCAGGAAAATGGTTCTTGAAATGTTCGAAGCAGGTTTTCGTTACCTCTGGGATGGCCTAAAATTTTGTTCCTTCGACTTAGATTTTGCTTTCCTCCATTTTCCTATACAAGTTGCATTTCACTATATAACTGCAGAAGTTGTCACTGATATGAAAAATATTGCTTGTATGAACACTTTTGTATGTTGTTTCATACACAAATTTTAATTAATTTTGATTATATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ya9v2C/sgn_marker_seqs" ref_id="SGN-M7055-2" ref_strand="+" ref_description="SGN-M7055-2 C2_At1g75200-2 [cosii_markers]">
      <seq>gtgatgtagatgagggtaatttggatgaggtttttggtaagtggagtaagaagattgttgggcttttgagtaatttgggcgagaatggaggggatatggggaatggagttggtgatggtagtgaagatgaagctgtgagtgagggagatgatgatgaggaatatgatgatgagtttgaagaaaatgacgaggagtcaggaattgttgatcttgaggatattgcgggtaaaggaccttcaagaaagaaaggagttaatgataagttagttaatgggaagtcgaatggtggaactgtgaatggagagaaggcaatggtaactccagttattagggcgagtttggagaaacagggatataaaataattggttcgcatagcggtgtgaaactttgtagatggacaaaatcacaacttagagggcgcggaggttgctataagcactcattttacggcattgagagtcacaggtgcatggaggccactcctagtttagcatgtgcaaacaaatgtgttttttgttggagacatcacacaaatcctgttgggaagagctggacgtggaagatggacgatcctattgagattgtgaacacagctatagatttgcataccaaaatgataaaacagatgaaaggcgttccaggtgttaaagctgagcgcttgtctgagggtctttctcctaggcattgtgccttgtcactggttggtgagcctattatgtatccagaaataaattcacttgtagatgagctgcacaagaggcggatttcgacttttcttgtaactaatgcacagtttcctgacaagattaagttattgaaaccaatcacacagttgtatgtcagcgtagatgctggtacaaaggacagcttaaaagcaattgacagaccactttttggggacttctgggagcgatttcttgattccttgagagctctcaaggagaaggagcaaagaactgtctatcgtttgacacttgttaaagggtggaacacagaagatgtggatgcatattctagcctattcagcattggaaaacccgatttcattgaaatcaaaggtgtcacttattgtggaacgtcggctacatcaaagttgacaatggagaatgtcccttggcattctgatgtgaaggaattctctgaagccttggctaaaaagagcaacggagagtatgaggttgcttgtgagcacgtgcattcttgctgtgttcttctggctaaagtcgataagttcaagatagacggtcaatggttcacgtggatagactacgagaagttccatgatctggtagcttctggaagaccctttacaagtaaagattacatgacacctacaccatcttgggctgtctatggagctgaggaaggtgggtttgatccagagcaattgcgtttcaaaaaagagcggcaccacagatcacctcgtcaggataatggttcttgaatgttcgaagcagttttcgttacctctgggatggcctaaaattttgttccttcgacttagattttgctttcctccatttccctatacaagttgcatttcacaatataattgcagaagttgtcactgatatgaaaattgttttgatgcttttctttgagctggtataatcaaatgatctgtattacattttactaaatttactcctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-09LFt/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="135107" stop="130590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134807" g_stop="134458" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134457" i_stop="134371" i_length="87">
            <donor d_prob="0.942" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134370" g_stop="134255" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="466" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134254" i_stop="133093" i_length="1162">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133092" g_stop="132917" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="642" r_length="176" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132916" i_stop="132478" i_length="439">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132477" g_stop="132287" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="833" r_length="191" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="132286" i_stop="132195" i_length="92">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="132194" g_stop="132108" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="834" r_stop="920" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="132107" i_stop="131768" i_length="340">
            <donor d_prob="0.876" d_score="0.96"/>
            <acceptor a_prob="0.752" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="131767" g_stop="131610" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="921" r_stop="1078" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="131609" i_stop="131502" i_length="108">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="131501" g_stop="131291" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1079" r_stop="1289" r_length="211" r_score="0.976"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="131290" i_stop="131188" i_length="103">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.508" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="131187" g_stop="130890" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1290" r_stop="1585" r_length="296" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-M7055-2" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>1587</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7055-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134807" e_stop="134458"/>
          <exon e_start="134370" e_stop="134255"/>
          <exon e_start="133092" e_stop="132917"/>
          <exon e_start="132477" e_stop="132287"/>
          <exon e_start="132194" e_stop="132108"/>
          <exon e_start="131767" e_stop="131610"/>
          <exon e_start="131501" e_stop="131291"/>
          <exon e_start="131187" e_stop="130890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGTAGATGAGGGTAGTTTGAATGAGGTTTTTGGTAAGTGGAGCAAGAGGATTGTTGGGATTTTGAGTAATTTGGGCGAGAATGGAGGGGATATGAGGAATGGAGTTGGTGGTGGTAGTGAAGATGAAGCTGTGAGTGAGGGAGATGATGATGGGGAATATGATGACGAGTTTGAAGAAAATGATGAGGAGTCAGGAATTGTTGATCTTGAGGATATTGCGGGTAAAGGACCTTCAAGAAAGAAAGGAGTTAACGATAAGTTCGTTAATGGGAAGTCGAATGGTGGAACTGTGAATGGAGAGAAGGCAATGGTAACTCCAGTTATTAGAGCGAGTTTGGAGAAACAGGTATCGTGGTCAAATGACGAACTTTTGTTGTATCAAATTAATTAGTTGGATTTATGGTAAGGTAGTTTATTTGGTGATAAATTGCAGGGATATAAAATAATTGGCACGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTATGGCATTGAGAGTCACAGGTGATTGTTTGTTTTTCTTCCAGCACAGACGGCTATTTATAACTTTTACATTTTTACTATTGCATTCTATCTATGAGTTGTGTAGTCCTTCTTTAATCCTTGGTTGACATAATTGTATTTGAGTTTTTAAAATTCTATGTGTTCAAGTTGCAACTGTGATGAGGTCCAGTTGTTTGGAAGTTTTTTAGGCTGCTAGAATTCTTAGAGTTGATCAAGTATGCGGTGAATAAGAATTTGCATGTGCTTATCCAGAAGAAGGATCTGTTTTTAGAGGCATGTGATATGGAGTAGGAGTAGAATAGTACGGAAACTTTCCATTTTACACAATGAACAACTAGAAATGAGCTGGAATTTTTATTGTGTTCAAATAGGCCCTCAGTGGAAAATCTCCTATTACGTAGCCAATTGAACCGTCTGAAGAGATTACAAAAGTAATCAAGCTTTTATAGCTTTTTTAAGAAGAAATAAGTAAAGGGATTCATTGATGGGTATCAAGTTCAGTAAGTTCAAAAGAGAGTTAGTTCCTATACTTGTCTACTGCCTAAATAGTTATGTTGCTCGGATTCTCCAAAAATTTTGCCATTGGATGCTTCAAAATTGTACTGTTTTTGAATGATCCAACACACACCCATGTTGTAAAAGGCGATCGCCTCGTCGCCAATGGCAAGAGGCGAAGCTAACCTTCATCGCCTTTTAGCTTTGTGGCGAGGCGATCTTCAAAAGGCGACGCCATGACGACAAAAGGCTTGAGGCAAGAGGTGATAAAGGCTAGAAAGGTGTCACCTTTTGTATTTCTTAAAAAAAGGCGACCAATTTAGGGTTTTAAAAGTTAAATGGTAATTTTAGGATTTTCGACCACTCCTCTGGTGACTCCAAAGTCTAACCAATACATATTTCTTCTTTTCTTCTTCAGACTTGAGTCACTTCTACCTTTGTTTTGACTTTTGTTCTCTTTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGTATGTACTATCTATGTTTGAAGAGTCCGAGCAACATAACTTAATAGATCATGAGCTAACAAGAAAAGGTTCTATTGCATTGACCTTTTGTGCATCATTAAGTAGGCTTGATATTTATTGACTTCCTAACCATGTATGCTGATTTTAAATCTGGATTTGCATTTAACCACTGCATAGGTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAGGTTTGTTTTCTGATACACTTGAACATATATGTTTCCGCATGAACTTGTAGGAAAGTTGAGCAATGCCACATTAGAAATAATGTGTTTGATTGAAATCATTTGGTGACTGTATTCAATATGTCTCTGTTTGGTCATTTTGTTGTGTCCGTTCAAGAAAAAGTACCTTGGGTTGAGTTGTGTTTAATTTTGATGCAATGTCCTTCCGATTTCCGAATAAAAAATGGTAAAACTGATACTGCTAACTGTTGGTTCTCCATTTTCTTACCCATTCGCATGAAATGTAGAAGTGGATACAGAATTTTCACAATTTTTTTAATCTGTCTGGATAAAATTGATGTCCTATCCACCGTACATATGCATTTTCTTTATTTTTTAAAAAATAGACGTCCTTCCACTTTCTTGCTTGTAGTGGTTAAGACCGAATATCTCACCCTTGCAGGTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAGGTCTACTAGGCTTTATTCTTCTTTCTTTATCAATGAAGTATGTTGATATCCAAATTCTGAATCTAAATCTCGCTTCATCTTTAAATTTACAGTTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTTGTAAGTGTCTTGAATATAAGATATTTGTCAGATTCAAGCTAAGAAATTAAGGAAAATCCATCAATGGATGGCACAAAGGAATGGGAAAATAGAGTCCAAAAACACAGTTAGGGTTGTTAGCTGCACACTAGTAAACCATAGCAGCGTGTCTCAAACTGATATTTATAATATATCAGTGAGAGGAAAGCTGTAAATTCTTACCTTTACATCAGTGCTAAAAAAGATTCGGCGGCCACGGGAAACTAAATCGAAATTTGCCATGTTTTCTCTGTTTTTTCATATTTGTATGCTACCATTCAGACTGGCTAATTATTGGATTGTGCTATTCGGATTTCATTAGGATTCTTTGAGAGCTCTTAAGGAGAAGGAGCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAACGTAAGTTTTCCCCCTCCCCCTCACTTTTTTCCTTTCCCCTCCCTCTTCTCTTCTACTAGTTTATCCGATTTCAAAGTTCAGTTAAGCAATCAGGGAGGTTTGACACAGGTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAGGTTGCCTGTGAGCATGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCGCTAAGTTCAAAATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTGGTTGGTTACTTCTCTTGTTCATACCTCAGCACGTAAATTATAAGCATACCCTTCCCATTTCAATAGCGTAATCAATGTTTTTTAATCCCATGGCGCGCTACAGGTAGCTTCTGGGAAACCCTTTACAAGTAAAGATTACATGACACCTACACCATCTTGGGCTGTCTATGGAGCTGAGGAAGGTGGTTTTGACCCAGAGCAATTGCGTTTCAAAAAAGAGCGGCACCACAGATCATCTCGTCAGGAAAATGGTTCTTGAAATGTTCGAAGCAGGTTTTCGTTACCTCTGGGATGGCCTAAAATTTTGTTCCTTCGACTTAGATTTTGCTTTCCTCCATTTTCCTATACAAGTTGCATTTCACTATATAACTGCCGAAGTTGTCACTGATATGAAAAATATT</genome_strand>
        <mrna_strand>GTGATGTAGATGAGGGTAATTTGGATGAGGTTTTTGGTAAGTGGAGTAAGAAGATTGTTGGGCTTTTGAGTAATTTGGGCGAGAATGGAGGGGATATGGGGAATGGAGTTGGTGATGGTAGTGAAGATGAAGCTGTGAGTGAGGGAGATGATGATGAGGAATATGATGATGAGTTTGAAGAAAATGACGAGGAGTCAGGAATTGTTGATCTTGAGGATATTGCGGGTAAAGGACCTTCAAGAAAGAAAGGAGTTAATGATAAGTTAGTTAATGGGAAGTCGAATGGTGGAACTGTGAATGGAGAGAAGGCAATGGTAACTCCAGTTATTAGGGCGAGTTTGGAGAAACAG.......................................................................................GGATATAAAATAATTGGTTCGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTACGGCATTGAGAGTCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACGTGGAAGATGGACGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTAAAGCTGAGCGCTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCCTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAAGAGGCGGATTTCGACTTTTCTTGTAACTAATGCACAGTTTCCTGACAAGATTAAGTTATTGAAACCAATCACACAG............................................................................................TTGTATGTCAGCGTAGATGCTGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTTTTTGGGGACTTCTGGGAGCGATTTCTT....................................................................................................................................................................................................................................................................................................................................................GATTCCTTGAGAGCTCTCAAGGAGAAGGAGCAAAGAACTGTCTATCGTTTGACACTTGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGAAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAAC............................................................................................................GTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAGGTTGCTTGTGAGCACGTGCATTCTTGCTGTGTTCTTCTGGCTAAAGTCGATAAGTTCAAGATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTG.......................................................................................................GTAGCTTCTGGAAGACCCTTTACAAGTAAAGATTACATGACACCTACACCATCTTGGGCTGTCTATGGAGCTGAGGAAGGTGGGTTTGATCCAGAGCAATTGCGTTTCAAAAAAGAGCGGCACCACAGATCACCTCGTCAGGATAATGGTTCTTG-AATGTTCGAAGCA-GTTTTCGTTACCTCTGGGATGGCCTAAAATTTTGTTCCTTCGACTTAGATTTTGCTTTCCTCCATTTCCCTATACAAGTTGCATTTCACAATATAATTGCAGAAGTTGTCACTGATATGAAAATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="57926" PGL_stop="55693"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57926" e_stop="56893"/>
            <exon e_start="56803" e_stop="56610"/>
            <exon e_start="56505" e_stop="56446"/>
            <exon e_start="56231" e_stop="55693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.138" acc_prob="0.994" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="0.949" e_score="0.995"/>
          <exon-intron don_prob="0.997" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="57926" e_stop="56893" e_length="1034"/>
          </exon>
          <intron i_serial="1" don_prob="0.138" acc_prob="0.994">
            <gDNA_intron_boundary i_start="56892" i_stop="56804" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="56803" e_stop="56610" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.949">
            <gDNA_intron_boundary i_start="56609" i_stop="56506" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56505" e_stop="56446" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.975">
            <gDNA_intron_boundary i_start="56445" i_stop="56232" i_length="214"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="56231" e_stop="55693" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57926" stop="56893"/>
              <exon start="56803" stop="56610"/>
              <exon start="56505" stop="56446"/>
              <exon start="56231" stop="55713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57491" stop="57112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57415" stop="56893"/>
              <exon start="56803" stop="56610"/>
              <exon start="56505" stop="56446"/>
              <exon start="56231" stop="55693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8940-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAGGTCCAGGAAGAAGAGAGAGCAGACCCGAAGTTGCTATTGCTGATGTTGTGGATGAATATCCAGGGCAAAACCCACCAATTTCACAGTCCAACACCCAAGTACAGTCTGGACAGCGAGCTTGGAAACCTGCTCCTGGTTTCAAGCCGAAGTCATTGTTGGAAATTCAAGAGGAAGAGCAGAGGAGAGCACAAGCAGAAATAACTACTACAGAGGTCGCCACATCTCTGAGCTCCTTAAGTGTGTCTACTCCATGGGCTGGATTTGTTACTAATTCAGATCATAAATTAGTTAGAGATACTCAGCAAGATGCTGCCAGCACTGATTTGAATATGAATAACTCAGATGTTTCTCTCGACCAGAAGACTAAGAAAAGTCAATTGCATGACGTACTGGCTGAGAACACTTTGGCCAAGTCAAGCGATAGAGAGAGAGATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATGACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAGTCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTTCATCATGGTCTAGTTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTCAAAGCA : ATCTGAATATCCTCAGCTTGGAAGTCAAGGCAGTTGGGGAAGCAAGACCACACCAGTGAAAGGAAGTCCTGGTGGTTCATTGAGCAGGCAAAAGTCTGTCAGCAGTAAGCCTGCAGAACGTCTACTATCCTCATCTCCTGCGTCAGGTCACTCGTCCCTGAAAGGGAAGAAGGATGCTTTGACAAAGCATTCAG : AAGCAATGGATTTCAGAGAATGGTGTGAGAATGAATGTGATAGGCTCATTGGTACAAGAG : ATACCAGCTTTCTGGACTTCTGTTTCAAGCAATCCAAGTCAGAGGCTGAAATGCTTCTGATAGAGAATCTTGGCTCTTATGATCCTGATCATGAATTCATTGACAAGTTCCTCAACTACAAAGACTTTTTGCCTGCGGATGTTTTTGACATGGCCTTCCAGGGTCGTAATGATCGTAAGGTCACTGGTGCAAGTGCCAAAAATGTGACTTCTAACAGTGTTGGCTTTGACCAGGGCAACTCAAGTGTTCAGGATTGGGCCTCAAAGGGAGGAAAGAAGAAGGGTAAGAAGGGCAAGAAGGTTAACCTTTCAGAGTTGGGCTTCAATGTGGTTAGCAACCGGATAATGATGGGAGAGATTCAGACTGTAGAAGATTAGGTAGAATGAGGGAGGGTACATACTTTGTGTTTGAGAATGTTTGTAAATGCTTTAGGATTATCCAGCAACAGAAGCAGTACTATTTAATCTGCTCAAAGCAATTTTTGTGATACTATTTCTGACTTTAGGTCTTCTAAATCAGATTCAATCAGAATTAAACCT</gDNA_template>
            <first_frame> V  G  P  G  R  R  E  S  R  P  E  V  A  I  A  D  V  V  D  E  Y  P  G  Q  N  P  P  I  S  Q  S  N  T  Q  V  Q  S  G  Q  R  A  W  K  P  A  P  G  F  K  P  K  S  L  L  E  I  Q  E  E  E  Q  R  R  A  Q  A  E  I  T  T  T  E  V  A  T  S  L  S  S  L  S  V  S  T  P  W  A  G  F  V  T  N  S  D  H  K  L  V  R  D  T  Q  Q  D  A  A  S  T  D  L  N  M  N  N  S  D  V  S  L  D  Q  K  T  K  K  S  Q  L  H  D  V  L  A  E  N  T  L  A  K  S  S  D  R  E  R  D  F  P  D  M  T  S  V  Q  P  S  V  S  V  N  D  D  D  N  F  I  E  A  K  E  T  K  K  S  R  K  R  S  A  K  S  K  G  A  G  A  K  A  S  M  P  T  A  A  S  E  V  S  V  A  S  S  P  I  D  K  V  K  S  L  R  Q  V  Q  P  D  Q  E  V  L  P  A  I  P  S  G  P  S  L  G  D  F  V  V  W  K  G  E  S  A  S  S  A  T  I  P  V  P  A  W  S  T  D  S  G  K  P  S  K  P  T  S  L  R  D  I  L  K  E  Q  E  K  K  V  T  S  G  Q  Q  H  I  P  V  P  T  Q  K  S  V  P  N  P  P  A  R  V  G  G  S  S  W  S  S  S  S  P  A  K  A  A  S  P  I  Q  I  N  S  Q  A  G  A  Y  S  K  N  K  V  E  D  D  L  F  W  G  P  I  D  H  P  K  Q  E  S  K  Q :   S  E  Y  P  Q  L  G  S  Q  G  S  W  G  S  K  T  T  P  V  K  G  S  P  G  G  S  L  S  R  Q  K  S  V  S  S  K  P  A  E  R  L  L  S  S  S  P  A  S  G  H  S  S  L  K  G  K  K  D  A  L  T  K  H  S   : E  A  M  D  F  R  E  W  C  E  N  E  C  D  R  L  I  G  T  R   : D  T  S  F  L  D  F  C  F  K  Q  S  K  S  E  A  E  M  L  L  I  E  N  L  G  S  Y  D  P  D  H  E  F  I  D  K  F  L  N  Y  K  D  F  L  P  A  D  V  F  D  M  A  F  Q  G  R  N  D  R  K  V  T  G  A  S  A  K  N  V  T  S  N  S  V  G  F  D  Q  G  N  S  S  V  Q  D  W  A  S  K  G  G  K  K  K  G  K  K  G  K  K  V  N  L  S  E  L  G  F  N  V  V  S  N  R  I  M  M  G  E  I  Q  T  V  E  D  *  V  E  *  G  R  V  H  T  L  C  L  R  M  F  V  N  A  L  G  L  S  S  N  R  S  S  T  I  *  S  A  Q  S  N  F  C  D  T  I  S  D  F  R  S  S  K  S  D  S  I  R  I  K  P </first_frame>
            <second_frame>  *  V  Q  E  E  E  R  A  D  P  K  L  L  L  L  M  L  W  M  N  I  Q  G  K  T  H  Q  F  H  S  P  T  P  K  Y  S  L  D  S  E  L  G  N  L  L  L  V  S  S  R  S  H  C  W  K  F  K  R  K  S  R  G  E  H  K  Q  K  *  L  L  Q  R  S  P  H  L  *  A  P  *  V  C  L  L  H  G  L  D  L  L  L  I  Q  I  I  N  *  L  E  I  L  S  K  M  L  P  A  L  I  *  I  *  I  T  Q  M  F  L  S  T  R  R  L  R  K  V  N  C  M  T  Y  W  L  R  T  L  W  P  S  Q  A  I  E  R  E  I  F  L  I  *  H  L  F  N  L  P  C  L  S  M  M  M  T  T  L  L  K  L  K  K  L  K  R  A  A  K  D  L  Q  N  L  R  E  Q  E  Q  R  P  Q  C  P  Q  L  L  P  R  C  L  L  H  Q  V  L  L  T  K  S  K  A  C  V  R  Y  N  L  T  R  K  Y  Y  L  L  Y  H  L  V  L  R  *  E  I  L  L  F  G  R  V  S  L  Q  V  L  L  L  F  L  F  Q  H  G  P  P  T  L  G  N  P  Q  N  P  H  P  C  G  T  S  *  R  N  K  K  R  R  L  L  L  D  S  S  I  Y  Q  C  Q  H  R  N  L  C  Q  I  H  L  R  E  *  V  V  H  H  G  L  V  H  R  P  P  R  L  H  L  L  F  R  L  T  H  K  L  A  L  I  Q  K  I  K  W  R  T  I  C  F  G  A  Q  *  I  I  P  S  K  S  Q  S   : N  L  N  I  L  S  L  E  V  K  A  V  G  E  A  R  P  H  Q  *  K  E  V  L  V  V  H  *  A  G  K  S  L  S  A  V  S  L  Q  N  V  Y  Y  P  H  L  L  R  Q  V  T  R  P  *  K  G  R  R  M  L  *  Q  S  I  Q  :  K  Q  W  I  S  E  N  G  V  R  M  N  V  I  G  S  L  V  Q  E  :  I  P  A  F  W  T  S  V  S  S  N  P  S  Q  R  L  K  C  F  *  *  R  I  L  A  L  M  I  L  I  M  N  S  L  T  S  S  S  T  T  K  T  F  C  L  R  M  F  L  T  W  P  S  R  V  V  M  I  V  R  S  L  V  Q  V  P  K  M  *  L  L  T  V  L  A  L  T  R  A  T  Q  V  F  R  I  G  P  Q  R  E  E  R  R  R  V  R  R  A  R  R  L  T  F  Q  S  W  A  S  M  W  L  A  T  G  *  *  W  E  R  F  R  L  *  K  I  R  *  N  E  G  G  Y  I  L  C  V  *  E  C  L  *  M  L  *  D  Y  P  A  T  E  A  V  L  F  N  L  L  K  A  I  F  V  I  L  F  L  T  L  G  L  L  N  Q  I  Q  S  E  L  N   </second_frame>
            <third_frame>   R  S  R  K  K  R  E  Q  T  R  S  C  Y  C  *  C  C  G  *  I  S  R  A  K  P  T  N  F  T  V  Q  H  P  S  T  V  W  T  A  S  L  E  T  C  S  W  F  Q  A  E  V  I  V  G  N  S  R  G  R  A  E  E  S  T  S  R  N  N  Y  Y  R  G  R  H  I  S  E  L  L  K  C  V  Y  S  M  G  W  I  C  Y  *  F  R  S  *  I  S  *  R  Y  S  A  R  C  C  Q  H  *  F  E  Y  E  *  L  R  C  F  S  R  P  E  D  *  E  K  S  I  A  *  R  T  G  *  E  H  F  G  Q  V  K  R  *  R  E  R  F  S  *  Y  D  I  C  S  T  F  R  V  C  Q  *  *  *  Q  L  Y  *  S  *  R  N  *  K  E  P  Q  K  I  C  K  I  *  G  S  R  S  K  G  L  N  A  H  S  C  F  R  G  V  C  C  I  K  S  Y  *  Q  S  Q  K  L  A  S  G  T  T  *  P  G  S  I  T  C  Y  T  I  W  S  F  A  R  R  F  C  C  L  E  G  *  V  C  K  F  C  Y  Y  S  C  S  S  M  V  H  R  L  W  E  T  L  K  T  H  I  L  A  G  H  P  K  G  T  R  K  E  G  Y  F  W  T  A  A  Y  T  S  A  N  T  E  I  C  A  K  S  T  C  E  S  R  W  F  I  M  V  *  F  I  A  R  Q  G  C  I  S  Y  S  D  *  L  T  S  W  R  L  F  K  K  *  S  G  G  R  F  V  L  G  P  N  R  S  S  Q  A  R  V  K  A  :  I  *  I  S  S  A  W  K  S  R  Q  L  G  K  Q  D  H  T  S  E  R  K  S  W  W  F  I  E  Q  A  K  V  C  Q  Q  *  A  C  R  T  S  T  I  L  I  S  C  V  R  S  L  V  P  E  R  E  E  G  C  F  D  K  A  F  R :   S  N  G  F  Q  R  M  V  *  E  *  M  *  *  A  H  W  Y  K  R :   Y  Q  L  S  G  L  L  F  Q  A  I  Q  V  R  G  *  N  A  S  D  R  E  S  W  L  L  *  S  *  S  *  I  H  *  Q  V  P  Q  L  Q  R  L  F  A  C  G  C  F  *  H  G  L  P  G  S  *  *  S  *  G  H  W  C  K  C  Q  K  C  D  F  *  Q  C  W  L  *  P  G  Q  L  K  C  S  G  L  G  L  K  G  R  K  E  E  G  *  E  G  Q  E  G  *  P  F  R  V  G  L  Q  C  G  *  Q  P  D  N  D  G  R  D  S  D  C  R  R  L  G  R  M  R  E  G  T  Y  F  V  F  E  N  V  C  K  C  F  R  I  I  Q  Q  Q  K  Q  Y  Y  L  I  C  S  K  Q  F  L  *  Y  Y  F  *  L  *  V  F  *  I  R  F  N  Q  N  *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57926" stop="56893"/>
                    <exon start="56803" stop="56610"/>
                    <exon start="56505" stop="56446"/>
                    <exon start="56231" stop="55855"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1662</number_coding_nucleotides>
                  <number_encoded_amino_acids>554</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGPGRRESRPEVAIADVVDEYPGQNPPISQSNTQVQSGQRAWKPAPGFKPKSLLEIQEEEQRRAQAEITTTEVATSLSSLSVSTPWAGFVTNSDHKLVRDTQQDAASTDLNMNNSDVSLDQKTKKSQLHDVLAENTLAKSSDRERDFPDMTSVQPSVSVNDDDNFIEAKETKKSRKRSAKSKGAGAKASMPTAASEVSVASSPIDKVKSLRQVQPDQEVLPAIPSGPSLGDFVVWKGESASSATIPVPAWSTDSGKPSKPTSLRDILKEQEKKVTSGQQHIPVPTQKSVPNPPARVGGSSWSSSSPAKAASPIQINSQAGAYSKNKVEDDLFWGPIDHPKQESKQSEYPQLGSQGSWGSKTTPVKGSPGGSLSRQKSVSSKPAERLLSSSPASGHSSLKGKKDALTKHSEAMDFREWCENECDRLIGTRDTSFLDFCFKQSKSEAEMLLIENLGSYDPDHEFIDKFLNYKDFLPADVFDMAFQGRNDRKVTGASAKNVTSNSVGFDQGNSSVQDWASKGGKKKGKKGKKVNLSELGFNVVSNRIMMGEIQTVED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="91844" PGL_stop="92261"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91844" e_stop="92261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="91844" e_stop="92261" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACAC</gDNA_template>
            <first_frame> F  L  L  S  *  F  Y  S  R  S  S  C  G  E  P  L  C  F  F  *  I  V  M  *  M  F  Q  S  M  E  M  P  I  M  A  P  L  L  C  S  L  L  G  S  V  F  *  A  G  L  G  F  *  L  L  N  *  F  R  V  L  G  R  S  C  I  *  L  D  D  G  K  F  A  T  *  N  L  G  I  S  L  F  L  I  H  A  V  W  G  P  T  L  W  W  G  V  L  L  S  *  C  M  D  V  L  P  G  A  F  *  F  C  L  C  C  C  C  C  *  S  *  R  S  E  D  A  F  A  A  V  G  S  *  I  I  L  V  T  </first_frame>
            <second_frame>  S  F  *  V  N  S  I  V  G  V  V  V  E  S  H  F  V  S  F  K  S  *  C  K  C  F  N  L  W  R  C  R  L  W  L  P  F  C  V  A  F  W  E  V  Y  F  R  Q  V  W  D  F  D  C  *  I  N  S  V  Y  W  V  D  L  V  S  D  W  M  M  E  N  L  Q  L  R  T  W  E  Y  L  C  F  *  F  M  L  S  G  V  P  P  C  G  G  E  C  C  S  V  D  A  W  M  F  Y  L  V  R  S  S  F  V  C  A  V  A  A  V  E  V  E  D  L  K  M  R  L  L  L  L  E  V  K  S  F  W  S  H </second_frame>
            <third_frame>   P  F  K  L  I  L  *  *  E  *  L  W  R  A  T  L  F  L  L  N  R  D  V  N  V  S  I  Y  G  D  A  D  Y  G  S  P  F  V  *  P  S  G  K  C  I  L  G  R  F  G  I  L  T  V  E  L  I  P  C  T  G  *  I  L  Y  L  I  G  *  W  K  I  C  N  L  E  L  G  N  I  F  V  S  D  S  C  C  L  G  S  H  L  V  V  G  S  V  A  Q  L  M  H  G  C  F  T  W  C  V  L  V  L  F  V  L  L  L  L  L  K  L  K  I  *  R  C  V  C  C  C  W  K  L  N  H  F  G  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0075G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="134807" PGL_stop="130818"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134807" e_stop="134458"/>
            <exon e_start="134370" e_stop="134255"/>
            <exon e_start="133092" e_stop="132917"/>
            <exon e_start="132477" e_stop="132287"/>
            <exon e_start="132194" e_stop="132108"/>
            <exon e_start="131767" e_stop="131610"/>
            <exon e_start="131501" e_stop="131291"/>
            <exon e_start="131187" e_stop="130818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.995" e_score="0.963"/>
          <exon-intron don_prob="0.985" acc_prob="0.818" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.876" acc_prob="0.752" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.508" e_score="0.991"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="134807" e_stop="134458" e_length="350"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.995">
            <gDNA_intron_boundary i_start="134457" i_stop="134371" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134370" e_stop="134255" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.818">
            <gDNA_intron_boundary i_start="134254" i_stop="133093" i_length="1162"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="133092" e_stop="132917" e_length="176"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.000">
            <gDNA_intron_boundary i_start="132916" i_stop="132478" i_length="439"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="132477" e_stop="132287" e_length="191"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="132286" i_stop="132195" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="132194" e_stop="132108" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.876" acc_prob="0.752">
            <gDNA_intron_boundary i_start="132107" i_stop="131768" i_length="340"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="131767" e_stop="131610" e_length="158"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="131609" i_stop="131502" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="131501" e_stop="131291" e_length="211"/>
          </exon>
          <intron i_serial="7" don_prob="0.828" acc_prob="0.508">
            <gDNA_intron_boundary i_start="131290" i_stop="131188" i_length="103"/>
          </intron>
          <exon e_serial="8" e_score="0.973">
            <gDNA_exon_boundary e_start="131187" e_stop="130818" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134807" stop="134458"/>
              <exon start="134370" stop="134255"/>
              <exon start="133092" stop="132917"/>
              <exon start="132477" stop="132287"/>
              <exon start="132194" stop="132108"/>
              <exon start="131767" stop="131610"/>
              <exon start="131501" stop="131291"/>
              <exon start="131187" stop="130890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7055-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134560" stop="134458"/>
              <exon start="134370" stop="134255"/>
              <exon start="133092" stop="132917"/>
              <exon start="132477" stop="132287"/>
              <exon start="132194" stop="132108"/>
              <exon start="131767" stop="131610"/>
              <exon start="131501" stop="131291"/>
              <exon start="131187" stop="130818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7055" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGATGTAGATGAGGGTAGTTTGAATGAGGTTTTTGGTAAGTGGAGCAAGAGGATTGTTGGGATTTTGAGTAATTTGGGCGAGAATGGAGGGGATATGAGGAATGGAGTTGGTGGTGGTAGTGAAGATGAAGCTGTGAGTGAGGGAGATGATGATGGGGAATATGATGACGAGTTTGAAGAAAATGATGAGGAGTCAGGAATTGTTGATCTTGAGGATATTGCGGGTAAAGGACCTTCAAGAAAGAAAGGAGTTAACGATAAGTTCGTTAATGGGAAGTCGAATGGTGGAACTGTGAATGGAGAGAAGGCAATGGTAACTCCAGTTATTAGAGCGAGTTTGGAGAAACAG : GGATATAAAATAATTGGCACGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTATGGCATTGAGAGTCACAG : GTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAG : GTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAG : TTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTT : GATTCTTTGAGAGCTCTTAAGGAGAAGGAGCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAAC : GTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAGGTTGCCTGTGAGCATGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCGCTAAGTTCAAAATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTG : GTAGCTTCTGGGAAACCCTTTACAAGTAAAGATTACATGACACCTACACCATCTTGGGCTGTCTATGGAGCTGAGGAAGGTGGTTTTGACCCAGAGCAATTGCGTTTCAAAAAAGAGCGGCACCACAGATCATCTCGTCAGGAAAATGGTTCTTGAAATGTTCGAAGCAGGTTTTCGTTACCTCTGGGATGGCCTAAAATTTTGTTCCTTCGACTTAGATTTTGCTTTCCTCCATTTTCCTATACAAGTTGCATTTCACTATATAACTGCCGAAGTTGTCACTGATATGAAAAATATTGCTTGTATGAACACTTTGTATGTTGTTTCATACACAAATTTTAATTAATTTTGATTATATAAAACGATTGGA</gDNA_template>
            <first_frame> V  M  *  M  R  V  V  *  M  R  F  L  V  S  G  A  R  G  L  L  G  F  *  V  I  W  A  R  M  E  G  I  *  G  M  E  L  V  V  V  V  K  M  K  L  *  V  R  E  M  M  M  G  N  M  M  T  S  L  K  K  M  M  R  S  Q  E  L  L  I  L  R  I  L  R  V  K  D  L  Q  E  R  K  E  L  T  I  S  S  L  M  G  S  R  M  V  E  L  *  M  E  R  R  Q  W  *  L  Q  L  L  E  R  V  W  R  N  R :   D  I  K  *  L  A  R  I  A  V  *  N  F  V  D  G  Q  N  H  N  L  E  G  A  E  V  A  I  S  T  H  F  M  A  L  R  V  T   : G  A  W  R  P  L  L  V  *  H  V  Q  T  N  V  F  F  V  G  D  I  T  Q  I  L  L  G  R  A  G  H  G  R  W  M  I  L  L  R  L  *  T  Q  L  *  I  C  I  P  K  *  *  N  R  *  K  A  F  Q  :  V  L  K  L  S  V  C  L  R  V  F  L  L  G  I  V  L  C  H  W  L  V  S  L  L  C  I  Q  K  *  I  H  L  *  M  S  C  T  G  G  G  F  R  L  F  L  L  L  M  H  S  S  L  T  R  L  S  Y  *  N  Q  S  H  S :   C  M  S  A  *  M  Q  V  Q  R  T  A  *  K  Q  L  T  D  H  Y  L  E  T  S  G  S  D  F  L :   I  L  *  E  L  L  R  R  R  S  K  E  L  S  I  V  *  H  S  L  K  G  G  T  Q  K  M  W  M  H  I  L  A  Y  S  A  L  G  N  P  I  S  L  K  S  K  V  S  L  I  V  E   : R  R  L  H  Q  S  *  Q  W  R  M  S  L  G  I  L  M  *  R  N  S  L  K  P  W  L  K  R  A  T  E  S  M  R  L  P  V  S  M  C  I  P  A  V  F  F  W  L  K  S  L  S  S  K  *  T  V  N  G  S  R  G  *  T  T  R  S  S  M  I  W :   *  L  L  G  N  P  L  Q  V  K  I  T  *  H  L  H  H  L  G  L  S  M  E  L  R  K  V  V  L  T  Q  S  N  C  V  S  K  K  S  G  T  T  D  H  L  V  R  K  M  V  L  E  M  F  E  A  G  F  R  Y  L  W  D  G  L  K  F  C  S  F  D  L  D  F  A  F  L  H  F  P  I  Q  V  A  F  H  Y  I  T  A  E  V  V  T  D  M  K  N  I  A  C  M  N  T  L  Y  V  V  S  Y  T  N  F  N  *  F  *  L  Y  K  T  I  G </first_frame>
            <second_frame>  *  C  R  *  G  *  F  E  *  G  F  W  *  V  E  Q  E  D  C  W  D  F  E  *  F  G  R  E  W  R  G  Y  E  E  W  S  W  W  W  *  *  R  *  S  C  E  *  G  R  *  *  W  G  I  *  *  R  V  *  R  K  *  *  G  V  R  N  C  *  S  *  G  Y  C  G  *  R  T  F  K  K  E  R  S  *  R  *  V  R  *  W  E  V  E  W  W  N  C  E  W  R  E  G  N  G  N  S  S  Y  *  S  E  F  G  E  T   : G  I  *  N  N  W  H  A  *  R  C  E  T  L  *  M  D  K  I  T  T  *  R  A  R  R  L  L  *  A  L  I  L  W  H  *  E  S  Q  :  V  H  G  G  H  S  *  F  S  M  C  K  Q  M  C  F  L  L  E  T  S  H  K  S  C  W  E  E  L  D  M  E  D  G  *  S  Y  *  D  C  E  H  S  Y  R  F  A  Y  Q  N  D  K  T  D  E  R  R  S  R :   C  *  S  *  A  F  V  *  G  S  F  S  *  A  L  C  F  V  T  G  W  *  A  Y  Y  V  S  R  N  K  F  T  C  R  *  A  A  Q  E  A  D  F  D  F  S  C  Y  *  C  T  V  P  *  Q  D  *  V  I  E  T  N  H  T   : V  V  C  Q  R  R  C  R  Y  K  G  Q  L  K  S  N  *  Q  T  T  I  W  R  L  L  G  A  I  S   : *  F  F  E  S  S  *  G  E  G  A  K  N  C  L  S  F  D  T  R  *  R  V  E  H  R  R  C  G  C  I  F  *  P  I  Q  H  W  E  T  R  F  H  *  N  Q  R  C  H  L  L  W  N  :  V  G  Y  I  K  V  D  N  G  E  C  P  L  A  F  *  C  E  G  I  L  *  S  L  G  *  K  E  Q  R  R  V  *  G  C  L  *  A  C  A  F  L  L  C  S  S  G  *  S  R  *  V  Q  N  R  R  S  M  V  H  V  D  R  L  R  E  V  P  *  S   : G  S  F  W  E  T  L  Y  K  *  R  L  H  D  T  Y  T  I  L  G  C  L  W  S  *  G  R  W  F  *  P  R  A  I  A  F  Q  K  R  A  A  P  Q  I  I  S  S  G  K  W  F  L  K  C  S  K  Q  V  F  V  T  S  G  M  A  *  N  F  V  P  S  T  *  I  L  L  S  S  I  F  L  Y  K  L  H  F  T  I  *  L  P  K  L  S  L  I  *  K  I  L  L  V  *  T  L  C  M  L  F  H  T  Q  I  L  I  N  F  D  Y  I  K  R  L   </second_frame>
            <third_frame>   D  V  D  E  G  S  L  N  E  V  F  G  K  W  S  K  R  I  V  G  I  L  S  N  L  G  E  N  G  G  D  M  R  N  G  V  G  G  G  S  E  D  E  A  V  S  E  G  D  D  D  G  E  Y  D  D  E  F  E  E  N  D  E  E  S  G  I  V  D  L  E  D  I  A  G  K  G  P  S  R  K  K  G  V  N  D  K  F  V  N  G  K  S  N  G  G  T  V  N  G  E  K  A  M  V  T  P  V  I  R  A  S  L  E  K  Q  :  G  Y  K  I  I  G  T  H  S  G  V  K  L  C  R  W  T  K  S  Q  L  R  G  R  G  G  C  Y  K  H  S  F  Y  G  I  E  S  H  R :   C  M  E  A  T  P  S  L  A  C  A  N  K  C  V  F  C  W  R  H  H  T  N  P  V  G  K  S  W  T  W  K  M  D  D  P  I  E  I  V  N  T  A  I  D  L  H  T  K  M  I  K  Q  M  K  G  V  P   : G  V  K  A  E  R  L  S  E  G  L  S  P  R  H  C  A  L  S  L  V  G  E  P  I  M  Y  P  E  I  N  S  L  V  D  E  L  H  R  R  R  I  S  T  F  L  V  T  N  A  Q  F  P  D  K  I  K  L  L  K  P  I  T  Q  :  L  Y  V  S  V  D  A  G  T  K  D  S  L  K  A  I  D  R  P  L  F  G  D  F  W  E  R  F  L  :  D  S  L  R  A  L  K  E  K  E  Q  R  T  V  Y  R  L  T  L  V  K  G  W  N  T  E  D  V  D  A  Y  S  S  L  F  S  I  G  K  P  D  F  I  E  I  K  G  V  T  Y  C  G  T :   S  A  T  S  K  L  T  M  E  N  V  P  W  H  S  D  V  K  E  F  S  E  A  L  A  K  K  S  N  G  E  Y  E  V  A  C  E  H  V  H  S  C  C  V  L  L  A  K  V  A  K  F  K  I  D  G  Q  W  F  T  W  I  D  Y  E  K  F  H  D  L  :  V  A  S  G  K  P  F  T  S  K  D  Y  M  T  P  T  P  S  W  A  V  Y  G  A  E  E  G  G  F  D  P  E  Q  L  R  F  K  K  E  R  H  H  R  S  S  R  Q  E  N  G  S  *  N  V  R  S  R  F  S  L  P  L  G  W  P  K  I  L  F  L  R  L  R  F  C  F  P  P  F  S  Y  T  S  C  I  S  L  Y  N  C  R  S  C  H  *  Y  E  K  Y  C  L  Y  E  H  F  V  C  C  F  I  H  K  F  *  L  I  L  I  I  *  N  D  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134805" stop="134458"/>
                    <exon start="134370" stop="134255"/>
                    <exon start="133092" stop="132917"/>
                    <exon start="132477" stop="132287"/>
                    <exon start="132194" stop="132108"/>
                    <exon start="131767" stop="131610"/>
                    <exon start="131501" stop="131291"/>
                    <exon start="131187" stop="131032"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1440</number_coding_nucleotides>
                  <number_encoded_amino_acids>480</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVDEGSLNEVFGKWSKRIVGILSNLGENGGDMRNGVGGGSEDEAVSEGDDDGEYDDEFEENDEESGIVDLEDIAGKGPSRKKGVNDKFVNGKSNGGTVNGEKAMVTPVIRASLEKQGYKIIGTHSGVKLCRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWTWKMDDPIEIVNTAIDLHTKMIKQMKGVPGVKAERLSEGLSPRHCALSLVGEPIMYPEINSLVDELHRRRISTFLVTNAQFPDKIKLLKPITQLYVSVDAGTKDSLKAIDRPLFGDFWERFLDSLRALKEKEQRTVYRLTLVKGWNTEDVDAYSSLFSIGKPDFIEIKGVTYCGTSATSKLTMENVPWHSDVKEFSEALAKKSNGEYEVACEHVHSCCVLLAKVAKFKIDGQWFTWIDYEKFHDLVASGKPFTSKDYMTPTPSWAVYGAEEGGFDPEQLRFKKERHHRSSRQENGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 35 chains have been computed
$ 
$ memory statistics:
$ 12688 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2114 bytes was the average size of a spliced alignment
$ 8200 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2733 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 35 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-26 19:21:38
-->
