<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-10 04:54:24"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E396156" ref_strand="+" ref_description="SGN-E396156 [TUS-39-F24]">
      <seq>gacaaattggtgacgaagaaatcgatgaagctgccttagagcaagctctggcagctgctgtgacgtgcacaattttggctgcagcaggtcctcaacgatctcgtgtacttgccacactgtacaaagatgagcgttgctccaaattgaaaatctacccaatcttgcagaaggtctatctagagagaatcttgagaaaacctgaaattgatgcttttgcagaagagttgaaaccacatcagcaagcacttttacctgataacttcacagttctggatcgtgctatgattgagcacaatctcttgagtgctagcaaactttatacaaatataagttttgatgagttgggcactttgttgggcattcctcctcaaaaggctgagaaaattgcttcaagaatgattttcgaagatagaatgcggggatccattgatcaggttgagggcgtcatacattttgaggatgacacggaagagctgcaacaatgggatcaacagatcatgggcctttgtcaaactctcaatgatgttcttgatagcatggcaaaaaaagggctccctattcctgtctagttcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10" g_stop="135" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136" i_stop="925" i_length="790">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="926" g_stop="970" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="170" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="971" i_stop="1164" i_length="194">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1165" g_stop="1233" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="239" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1234" i_stop="1329" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1330" g_stop="1421" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="331" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1422" i_stop="1525" i_length="104">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1526" g_stop="1568" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="374" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1569" i_stop="2453" i_length="885">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2454" g_stop="2513" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="434" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2514" i_stop="2904" i_length="391">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2905" g_stop="2964" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="494" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2965" i_stop="3310" i_length="346">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3311" g_stop="3393" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="577" r_length="83" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E396156" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10" e_stop="135"/>
          <exon e_start="926" e_stop="970"/>
          <exon e_start="1165" e_stop="1233"/>
          <exon e_start="1330" e_stop="1421"/>
          <exon e_start="1526" e_stop="1568"/>
          <exon e_start="2454" e_stop="2513"/>
          <exon e_start="2905" e_stop="2964"/>
          <exon e_start="3311" e_stop="3393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTTTACGCTACAGAGAAATCGATGAAGCTGCCTTAGAGCAAGCTCTGGCAGCTGCTGTGACGTGCACAATTTTGGCTGCAGCAGGTCCTCAACGATCTCGTGTACTTGCCACACTGTACAAAGTAAGGATGCAATGACTTAGAGCTTTAAATGTTTTGATTGTTATTGTAAAGAGTGCAACTAATGGGTAGGTTGTTGTGGAAGTTATCCTCTGTGGAGTTGTTGAATGAATGATTTAATGGTATTTTTATATATTTGAGTATTGGGATTAATATTATCACGGCTGTATCTTGAATTATTGAAGTTAGTAATGTCATTTGTAATTATGATGTTATAAGCTATAATCCTTTCCATCCTTATGAGGTAGGTTAACTGAGTAAGGTCTGCGTAGACCCCCAGTTGTAAGATATATTCCTTTCTGGAAATCGTGGGCTGCTAAATTCAAAGAAGATTACGCATTGCCTTCTTCCTTATGCCCCCAGAGTTCGCATCTTTCTTGTGCTTCTCACTTTAGTAGCACTGTTTGTAATAACTAATAGCTGTATGAACTTCTAATTCAATGGTTTGATATTTGCTCTCGTTTGCCAAGATTGTGAGACCACTCATGGTAAAGGGCAGGTGCATTGCACCAAGGAAATGGTAACAACTAACCATAAATAGGTGATTTTATATTTGGTGGACATGTCATTCTGTTGTCTAATACCTGCTAATATTTTGCTGTTACGATAACCTTTGAAAATTTGAGGTTAATTAGTTTTCTCGGGCAACTTCCAGTTGAGATCTGCCACTATGTAGTCATATTTGTATTTTTTTAATGGGTCTCAAATGACTGCCTACACTGATCCCCTCCTATGTGCTATTTGTTCAGTTTTGCTATAACAATTTTTCTTTTTTACTTATTTTGGATAACAGGATGAGCGTTGCTCCAAATTGAAAATCTACCCAATCTTGCAGAAGGTACTTCACTTGCTGCTTCATACAATTTGCATAGCTCTGTCTCCACTCTCTTTACTTGTACCGAGTTTCCTTTATGCTATAAGCTCTTTGCATTTGAGTGTGGATTTTTTATGTGCATATAGTGTTGTGTCAGATTTTTTACGTAGATACTATTTTTTTTAAAAATAAAGTTTTGTTTAATTTGAAATATTCAGGTCTATCTAGAGAGAATCTTGAGAAAACCTGAAATTGATGCTTTTGCAGAAGAGTTGAAACCACATCAGGTTCCCCCCTTTTTTGGGTATTGCTTTTTTTTTCAAAATGTCAAAATACATTATCTGATATTCGCTGTTTATCTTATTTTTTTGTGTTTCCTACAGCAAGCACTTTTACCTGATAACTTCACAGTTCTGGATCGTGCTATGATTGAGCACAATCTCTTGAGTGCTAGCAAACTTTATACAAATATAAGGTAGAAAGGAAGCTTATCTTTCCCTTGTTTTTTGTGATTTAGATTTTTCATAGCTCATGCTTTTCTATTATCTCAAGCTAAATCCCCTCATTAATCTGTGACAGTTTTGATGAGTTGGGCACTTTGTTGGGCATTCCTCCTCAAAAGGTACCTAATGATGTTGCTAAGCTATTTTTCTTAATTTTTGCTGTTCTTGGGCTAATTTTTTGGGTTTTGCTGTCAACCCACTAGCCCGAGTTGATGCATAGCAGTTGCGACTGTTGTAGGAACTATACGAAAATAGGAGGTTTTAGCCTTTTAGGGCGGTTGGTGGCTCGGTTAATCTATTTGCAGTAATTCTTAGTGGTCCCCTCTGGACCATTTATTGAGCGACATTTAATCTTCAAAGCAATTATCAAATGAAGAAACAGATAAATTGTTCTCTCATGCTATGCTGCAAAAAGCATATCTCCATCATCCTACTTATGCATTGTTTCTGGGTAAATCCACAAGTCAAGTTTAAACTGTAAACGCTATCAGGATGATAGAGAAGGTGATATTATTTTGAATGCATTTTTGAAGTTGATTCTTAGCCTATGCTGCTCAGCTTTTGAGGTCTTCTAGTAGAAATCTGATTTTGAGAAAAAGACGCTGCTTCACAGAATTTGGACATGCCTCTCCCGTTCTCGCTTATTTATTTCCATTTTTAATGTACTAAGATCAGTTTGCTGTTGTCTTGCCTGACAAGTAATTTAAACACCACACAACCAACACAATCTTACATGTTAAATACTGTTTTCTTCACAGTATTTGGACATGCCTCTCCCATTCTTGCATATTGATTTCCATTTTTATGTACTAAGATCAGTTTACTGTTGTGCTTGTCTGATAAGTAATTTAAACTCCATGTAACCAACGTAATCCTTCATGTCAAAGTGTTGCCATCACTCTTATTGCTTTCCATGGCTGTTTTGGGTACCAAAATCAATTAACAACTATGCGGCTTCATTTTCATCTGTAACTTATTCTGTTATAACAATTTTTGTCATGAAGGCTGAGAAAATTGCTTCAAGAATGATTTTCGAAGATAGAATGCGGGGATCCATTGATCAGGTAAATTTCTCAATTAGTAATGCCATCTACACATTCCTATCTTTGTCCTTGAAAAGAAGAGGAGATGATATTGGGTCATGACTTGTCACTGGCTAACTTTAGGTACAGAGTGTCCATATATGCCATATATACATACTTGAATTCCCTATGCTACCCGTAATGCTGATAGTAATATGCATGGATTGTAGTTTGATGTGGAAGATATTATCACATACGATAAATTTGTTTTTAAGCCATTGTATAGTAATTATCCGCGACTATCACACGAGATGTATTTAACGAGCAATATATGCAAATATAATATCAAACTGGATAAATATGGTTGGAGACAAAAAAAATGAGTTCCATTGTAGTTTTAGCATCTATTAATTTAAGTTGATTTTATTGTCAGGTTGAGGGCGTCATACATTTTGAGGATGACACGGAAGAGCTGCAACAATGGGATCAACAGGTGATTTAGTTTCTAACGTGCTTGGAATCTACTTTATGTTTCTTTTCTCATGGAAATCTACCTTTTTCCTGTTGAAATCTAAAAAGGAGAAAGGAAAAGGGTGTGGTTCATTGATGTCTATTAGTATGCCTCTAGATCTAAACATATTCATCAGAACACTCTTTAATTTGTTGATAACTTGATCAAGTTTTAATATATGTTATATAACATTTTCTGCTCACCATCGAACACTGGAAAAACATTTTTCATGAAAAATGACTTTCGTTATACCAAGCTCCGTCTTTCTTGTTTTAAGGTTTTATTATTGAAATGATACTAGTGTTGACAACATTGCTAATCTTTGCAGATCATGGGCCTTTGTCAAGCTCTCAATGATGTTCTTGATAGCATGGCAAAGAAGGGGCTCCCTATTCCTGTCTAGTTCATTTT</genome_strand>
        <mrna_strand>GACAAATT-GGTGACGAAGAAATCGATGAAGCTGCCTTAGAGCAAGCTCTGGCAGCTGCTGTGACGTGCACAATTTTGGCTGCAGCAGGTCCTCAACGATCTCGTGTACTTGCCACACTGTACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCGTTGCTCCAAATTGAAAATCTACCCAATCTTGCAGAAG..................................................................................................................................................................................................GTCTATCTAGAGAGAATCTTGAGAAAACCTGAAATTGATGCTTTTGCAGAAGAGTTGAAACCACATCAG................................................................................................CAAGCACTTTTACCTGATAACTTCACAGTTCTGGATCGTGCTATGATTGAGCACAATCTCTTGAGTGCTAGCAAACTTTATACAAATATAAG........................................................................................................TTTTGATGAGTTGGGCACTTTGTTGGGCATTCCTCCTCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAATTGCTTCAAGAATGATTTTCGAAGATAGAATGCGGGGATCCATTGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGCGTCATACATTTTGAGGATGACACGGAAGAGCTGCAACAATGGGATCAACAG..........................................................................................................................................................................................................................................................................................................................................................ATCATGGGCCTTTGTCAAACTCTCAATGATGTTCTTGATAGCATGGCAAAAAAAGGGCTCCCTATTCCTGTCTAGTTCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E375551" ref_strand="+" ref_description="SGN-E375551 [TUS-34-H12]">
      <seq>acaaattggtgacgaagaaatcgatgaagctgccttagagcaagctctggcagctgctgtgacgtgcacaattttggctgcagcaggtcctcaacgatctcgtgtacttgccacactgtacaaagatgagcgttgctccaaattgaaaatctacccaatcttgcagaaggtctatctagagagaatcttgagaaaacctgaaattgatgcttttgcagaagagttgaaaccacatcagcaagcacttttacctgataacttcacagttctggatcgtgctatgattgagcacaatctcttgagtgctagcaaactttatacaaatataagttttgatgagttgggcactttgttgggcattcctcctcaaaaggctgagaaaattgcttcaagaatgattttcgaagatagaatgcggggatccattgatcaggttgagggcgtcatacattttgaggatgacacggaagagctgcaacaatgggatcaacagatcatgggcctttgtcaagctctcaatgatgttcttgatagcatggcaaagaaggggctccctattcctgtctagttcattttgtggtcatttttgaagaatctggtacgatgctgatgcactccttcctcgtaccatttactggactggcgccactctatactttcaccagttttaaaactttgctcggaactcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11" g_stop="135" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136" i_stop="925" i_length="790">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="926" g_stop="970" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="169" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="971" i_stop="1164" i_length="194">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1165" g_stop="1233" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="238" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1234" i_stop="1329" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1330" g_stop="1421" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="330" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1422" i_stop="1525" i_length="104">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1526" g_stop="1568" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="373" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1569" i_stop="2453" i_length="885">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2454" g_stop="2513" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="433" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2514" i_stop="2904" i_length="391">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2905" g_stop="2964" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="493" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2965" i_stop="3310" i_length="346">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3311" g_stop="3508" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="691" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E375551" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11" e_stop="135"/>
          <exon e_start="926" e_stop="970"/>
          <exon e_start="1165" e_stop="1233"/>
          <exon e_start="1330" e_stop="1421"/>
          <exon e_start="1526" e_stop="1568"/>
          <exon e_start="2454" e_stop="2513"/>
          <exon e_start="2905" e_stop="2964"/>
          <exon e_start="3311" e_stop="3508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTACGCTACAGAGAAATCGATGAAGCTGCCTTAGAGCAAGCTCTGGCAGCTGCTGTGACGTGCACAATTTTGGCTGCAGCAGGTCCTCAACGATCTCGTGTACTTGCCACACTGTACAAAGTAAGGATGCAATGACTTAGAGCTTTAAATGTTTTGATTGTTATTGTAAAGAGTGCAACTAATGGGTAGGTTGTTGTGGAAGTTATCCTCTGTGGAGTTGTTGAATGAATGATTTAATGGTATTTTTATATATTTGAGTATTGGGATTAATATTATCACGGCTGTATCTTGAATTATTGAAGTTAGTAATGTCATTTGTAATTATGATGTTATAAGCTATAATCCTTTCCATCCTTATGAGGTAGGTTAACTGAGTAAGGTCTGCGTAGACCCCCAGTTGTAAGATATATTCCTTTCTGGAAATCGTGGGCTGCTAAATTCAAAGAAGATTACGCATTGCCTTCTTCCTTATGCCCCCAGAGTTCGCATCTTTCTTGTGCTTCTCACTTTAGTAGCACTGTTTGTAATAACTAATAGCTGTATGAACTTCTAATTCAATGGTTTGATATTTGCTCTCGTTTGCCAAGATTGTGAGACCACTCATGGTAAAGGGCAGGTGCATTGCACCAAGGAAATGGTAACAACTAACCATAAATAGGTGATTTTATATTTGGTGGACATGTCATTCTGTTGTCTAATACCTGCTAATATTTTGCTGTTACGATAACCTTTGAAAATTTGAGGTTAATTAGTTTTCTCGGGCAACTTCCAGTTGAGATCTGCCACTATGTAGTCATATTTGTATTTTTTTAATGGGTCTCAAATGACTGCCTACACTGATCCCCTCCTATGTGCTATTTGTTCAGTTTTGCTATAACAATTTTTCTTTTTTACTTATTTTGGATAACAGGATGAGCGTTGCTCCAAATTGAAAATCTACCCAATCTTGCAGAAGGTACTTCACTTGCTGCTTCATACAATTTGCATAGCTCTGTCTCCACTCTCTTTACTTGTACCGAGTTTCCTTTATGCTATAAGCTCTTTGCATTTGAGTGTGGATTTTTTATGTGCATATAGTGTTGTGTCAGATTTTTTACGTAGATACTATTTTTTTTAAAAATAAAGTTTTGTTTAATTTGAAATATTCAGGTCTATCTAGAGAGAATCTTGAGAAAACCTGAAATTGATGCTTTTGCAGAAGAGTTGAAACCACATCAGGTTCCCCCCTTTTTTGGGTATTGCTTTTTTTTTCAAAATGTCAAAATACATTATCTGATATTCGCTGTTTATCTTATTTTTTTGTGTTTCCTACAGCAAGCACTTTTACCTGATAACTTCACAGTTCTGGATCGTGCTATGATTGAGCACAATCTCTTGAGTGCTAGCAAACTTTATACAAATATAAGGTAGAAAGGAAGCTTATCTTTCCCTTGTTTTTTGTGATTTAGATTTTTCATAGCTCATGCTTTTCTATTATCTCAAGCTAAATCCCCTCATTAATCTGTGACAGTTTTGATGAGTTGGGCACTTTGTTGGGCATTCCTCCTCAAAAGGTACCTAATGATGTTGCTAAGCTATTTTTCTTAATTTTTGCTGTTCTTGGGCTAATTTTTTGGGTTTTGCTGTCAACCCACTAGCCCGAGTTGATGCATAGCAGTTGCGACTGTTGTAGGAACTATACGAAAATAGGAGGTTTTAGCCTTTTAGGGCGGTTGGTGGCTCGGTTAATCTATTTGCAGTAATTCTTAGTGGTCCCCTCTGGACCATTTATTGAGCGACATTTAATCTTCAAAGCAATTATCAAATGAAGAAACAGATAAATTGTTCTCTCATGCTATGCTGCAAAAAGCATATCTCCATCATCCTACTTATGCATTGTTTCTGGGTAAATCCACAAGTCAAGTTTAAACTGTAAACGCTATCAGGATGATAGAGAAGGTGATATTATTTTGAATGCATTTTTGAAGTTGATTCTTAGCCTATGCTGCTCAGCTTTTGAGGTCTTCTAGTAGAAATCTGATTTTGAGAAAAAGACGCTGCTTCACAGAATTTGGACATGCCTCTCCCGTTCTCGCTTATTTATTTCCATTTTTAATGTACTAAGATCAGTTTGCTGTTGTCTTGCCTGACAAGTAATTTAAACACCACACAACCAACACAATCTTACATGTTAAATACTGTTTTCTTCACAGTATTTGGACATGCCTCTCCCATTCTTGCATATTGATTTCCATTTTTATGTACTAAGATCAGTTTACTGTTGTGCTTGTCTGATAAGTAATTTAAACTCCATGTAACCAACGTAATCCTTCATGTCAAAGTGTTGCCATCACTCTTATTGCTTTCCATGGCTGTTTTGGGTACCAAAATCAATTAACAACTATGCGGCTTCATTTTCATCTGTAACTTATTCTGTTATAACAATTTTTGTCATGAAGGCTGAGAAAATTGCTTCAAGAATGATTTTCGAAGATAGAATGCGGGGATCCATTGATCAGGTAAATTTCTCAATTAGTAATGCCATCTACACATTCCTATCTTTGTCCTTGAAAAGAAGAGGAGATGATATTGGGTCATGACTTGTCACTGGCTAACTTTAGGTACAGAGTGTCCATATATGCCATATATACATACTTGAATTCCCTATGCTACCCGTAATGCTGATAGTAATATGCATGGATTGTAGTTTGATGTGGAAGATATTATCACATACGATAAATTTGTTTTTAAGCCATTGTATAGTAATTATCCGCGACTATCACACGAGATGTATTTAACGAGCAATATATGCAAATATAATATCAAACTGGATAAATATGGTTGGAGACAAAAAAAATGAGTTCCATTGTAGTTTTAGCATCTATTAATTTAAGTTGATTTTATTGTCAGGTTGAGGGCGTCATACATTTTGAGGATGACACGGAAGAGCTGCAACAATGGGATCAACAGGTGATTTAGTTTCTAACGTGCTTGGAATCTACTTTATGTTTCTTTTCTCATGGAAATCTACCTTTTTCCTGTTGAAATCTAAAAAGGAGAAAGGAAAAGGGTGTGGTTCATTGATGTCTATTAGTATGCCTCTAGATCTAAACATATTCATCAGAACACTCTTTAATTTGTTGATAACTTGATCAAGTTTTAATATATGTTATATAACATTTTCTGCTCACCATCGAACACTGGAAAAACATTTTTCATGAAAAATGACTTTCGTTATACCAAGCTCCGTCTTTCTTGTTTTAAGGTTTTATTATTGAAATGATACTAGTGTTGACAACATTGCTAATCTTTGCAGATCATGGGCCTTTGTCAAGCTCTCAATGATGTTCTTGATAGCATGGCAAAGAAGGGGCTCCCTATTCCTGTCTAGTTCATTTTGTGGTCATTTTTGAAGAATCTGGTACGATGCTGATGCACTCCTTCCTCGTACCATTTACTGGACTGGCGCCACTCTATACTTTCACCAGTTTTAAAACTTTGCTCGGAACTCGTC</genome_strand>
        <mrna_strand>ACAAATT-GGTGACGAAGAAATCGATGAAGCTGCCTTAGAGCAAGCTCTGGCAGCTGCTGTGACGTGCACAATTTTGGCTGCAGCAGGTCCTCAACGATCTCGTGTACTTGCCACACTGTACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCGTTGCTCCAAATTGAAAATCTACCCAATCTTGCAGAAG..................................................................................................................................................................................................GTCTATCTAGAGAGAATCTTGAGAAAACCTGAAATTGATGCTTTTGCAGAAGAGTTGAAACCACATCAG................................................................................................CAAGCACTTTTACCTGATAACTTCACAGTTCTGGATCGTGCTATGATTGAGCACAATCTCTTGAGTGCTAGCAAACTTTATACAAATATAAG........................................................................................................TTTTGATGAGTTGGGCACTTTGTTGGGCATTCCTCCTCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAATTGCTTCAAGAATGATTTTCGAAGATAGAATGCGGGGATCCATTGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGCGTCATACATTTTGAGGATGACACGGAAGAGCTGCAACAATGGGATCAACAG..........................................................................................................................................................................................................................................................................................................................................................ATCATGGGCCTTTGTCAAGCTCTCAATGATGTTCTTGATAGCATGGCAAAGAAGGGGCTCCCTATTCCTGTCTAGTTCATTTTGTGGTCATTTTTGAAGAATCTGGTACGATGCTGATGCACTCCTTCCTCGTACCATTTACTGGACTGGCGCCACTCTATACTTTCACCAGTTTTAAAACTTTGCTCGGAACTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E254337" ref_strand="+" ref_description="SGN-E254337 [cLEG-27-P16]">
      <seq>acaaattggtgacgaagaaatcgatgaagctgccttagagcaagctctggcagctgctgtgacgtgcacaattttggctgcagcaggtcctcaacgatctcgtgtacttgccacactgtacaaagatgagcgttgctccaaattgaaaatctacccaatcttgcagaaggtctatctagagagaatcttgagaaaacctgaaattgatgcttttgcagaagagttgaaaccacatcagcaagcacttttacctgataacttcacagttctggatcgtgctatgattgagcacaatctcttgagtgctagcaaactttatacaaatataagttttgatgagttgggcacttggttgggcattcctcctcaaaaggctgagaaaattgcttcaagaatgattttcgaagatagaatgcggggatccattgatcaggttgagggcgtcatacattttgaggatgacacggaagagctgcaacaatgggatcaacagatcatgggcctttgtcaagctctcaatgatgttcttgatagcatggcaaagaaggggctccctattcctgtctagttcattttgtggtcatttttgaagaatctggtacgatgctgatgcactccttcctcgtaccatttactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11" g_stop="135" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136" i_stop="925" i_length="790">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="926" g_stop="970" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="169" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="971" i_stop="1164" i_length="194">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1165" g_stop="1233" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="238" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1234" i_stop="1329" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1330" g_stop="1421" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="330" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1422" i_stop="1525" i_length="104">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1526" g_stop="1568" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="373" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1569" i_stop="2453" i_length="885">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2454" g_stop="2513" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="433" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2514" i_stop="2904" i_length="391">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2905" g_stop="2964" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="493" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2965" i_stop="3310" i_length="346">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3311" g_stop="3456" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="639" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E254337" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11" e_stop="135"/>
          <exon e_start="926" e_stop="970"/>
          <exon e_start="1165" e_stop="1233"/>
          <exon e_start="1330" e_stop="1421"/>
          <exon e_start="1526" e_stop="1568"/>
          <exon e_start="2454" e_stop="2513"/>
          <exon e_start="2905" e_stop="2964"/>
          <exon e_start="3311" e_stop="3456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTACGCTACAGAGAAATCGATGAAGCTGCCTTAGAGCAAGCTCTGGCAGCTGCTGTGACGTGCACAATTTTGGCTGCAGCAGGTCCTCAACGATCTCGTGTACTTGCCACACTGTACAAAGTAAGGATGCAATGACTTAGAGCTTTAAATGTTTTGATTGTTATTGTAAAGAGTGCAACTAATGGGTAGGTTGTTGTGGAAGTTATCCTCTGTGGAGTTGTTGAATGAATGATTTAATGGTATTTTTATATATTTGAGTATTGGGATTAATATTATCACGGCTGTATCTTGAATTATTGAAGTTAGTAATGTCATTTGTAATTATGATGTTATAAGCTATAATCCTTTCCATCCTTATGAGGTAGGTTAACTGAGTAAGGTCTGCGTAGACCCCCAGTTGTAAGATATATTCCTTTCTGGAAATCGTGGGCTGCTAAATTCAAAGAAGATTACGCATTGCCTTCTTCCTTATGCCCCCAGAGTTCGCATCTTTCTTGTGCTTCTCACTTTAGTAGCACTGTTTGTAATAACTAATAGCTGTATGAACTTCTAATTCAATGGTTTGATATTTGCTCTCGTTTGCCAAGATTGTGAGACCACTCATGGTAAAGGGCAGGTGCATTGCACCAAGGAAATGGTAACAACTAACCATAAATAGGTGATTTTATATTTGGTGGACATGTCATTCTGTTGTCTAATACCTGCTAATATTTTGCTGTTACGATAACCTTTGAAAATTTGAGGTTAATTAGTTTTCTCGGGCAACTTCCAGTTGAGATCTGCCACTATGTAGTCATATTTGTATTTTTTTAATGGGTCTCAAATGACTGCCTACACTGATCCCCTCCTATGTGCTATTTGTTCAGTTTTGCTATAACAATTTTTCTTTTTTACTTATTTTGGATAACAGGATGAGCGTTGCTCCAAATTGAAAATCTACCCAATCTTGCAGAAGGTACTTCACTTGCTGCTTCATACAATTTGCATAGCTCTGTCTCCACTCTCTTTACTTGTACCGAGTTTCCTTTATGCTATAAGCTCTTTGCATTTGAGTGTGGATTTTTTATGTGCATATAGTGTTGTGTCAGATTTTTTACGTAGATACTATTTTTTTTAAAAATAAAGTTTTGTTTAATTTGAAATATTCAGGTCTATCTAGAGAGAATCTTGAGAAAACCTGAAATTGATGCTTTTGCAGAAGAGTTGAAACCACATCAGGTTCCCCCCTTTTTTGGGTATTGCTTTTTTTTTCAAAATGTCAAAATACATTATCTGATATTCGCTGTTTATCTTATTTTTTTGTGTTTCCTACAGCAAGCACTTTTACCTGATAACTTCACAGTTCTGGATCGTGCTATGATTGAGCACAATCTCTTGAGTGCTAGCAAACTTTATACAAATATAAGGTAGAAAGGAAGCTTATCTTTCCCTTGTTTTTTGTGATTTAGATTTTTCATAGCTCATGCTTTTCTATTATCTCAAGCTAAATCCCCTCATTAATCTGTGACAGTTTTGATGAGTTGGGCACTTTGTTGGGCATTCCTCCTCAAAAGGTACCTAATGATGTTGCTAAGCTATTTTTCTTAATTTTTGCTGTTCTTGGGCTAATTTTTTGGGTTTTGCTGTCAACCCACTAGCCCGAGTTGATGCATAGCAGTTGCGACTGTTGTAGGAACTATACGAAAATAGGAGGTTTTAGCCTTTTAGGGCGGTTGGTGGCTCGGTTAATCTATTTGCAGTAATTCTTAGTGGTCCCCTCTGGACCATTTATTGAGCGACATTTAATCTTCAAAGCAATTATCAAATGAAGAAACAGATAAATTGTTCTCTCATGCTATGCTGCAAAAAGCATATCTCCATCATCCTACTTATGCATTGTTTCTGGGTAAATCCACAAGTCAAGTTTAAACTGTAAACGCTATCAGGATGATAGAGAAGGTGATATTATTTTGAATGCATTTTTGAAGTTGATTCTTAGCCTATGCTGCTCAGCTTTTGAGGTCTTCTAGTAGAAATCTGATTTTGAGAAAAAGACGCTGCTTCACAGAATTTGGACATGCCTCTCCCGTTCTCGCTTATTTATTTCCATTTTTAATGTACTAAGATCAGTTTGCTGTTGTCTTGCCTGACAAGTAATTTAAACACCACACAACCAACACAATCTTACATGTTAAATACTGTTTTCTTCACAGTATTTGGACATGCCTCTCCCATTCTTGCATATTGATTTCCATTTTTATGTACTAAGATCAGTTTACTGTTGTGCTTGTCTGATAAGTAATTTAAACTCCATGTAACCAACGTAATCCTTCATGTCAAAGTGTTGCCATCACTCTTATTGCTTTCCATGGCTGTTTTGGGTACCAAAATCAATTAACAACTATGCGGCTTCATTTTCATCTGTAACTTATTCTGTTATAACAATTTTTGTCATGAAGGCTGAGAAAATTGCTTCAAGAATGATTTTCGAAGATAGAATGCGGGGATCCATTGATCAGGTAAATTTCTCAATTAGTAATGCCATCTACACATTCCTATCTTTGTCCTTGAAAAGAAGAGGAGATGATATTGGGTCATGACTTGTCACTGGCTAACTTTAGGTACAGAGTGTCCATATATGCCATATATACATACTTGAATTCCCTATGCTACCCGTAATGCTGATAGTAATATGCATGGATTGTAGTTTGATGTGGAAGATATTATCACATACGATAAATTTGTTTTTAAGCCATTGTATAGTAATTATCCGCGACTATCACACGAGATGTATTTAACGAGCAATATATGCAAATATAATATCAAACTGGATAAATATGGTTGGAGACAAAAAAAATGAGTTCCATTGTAGTTTTAGCATCTATTAATTTAAGTTGATTTTATTGTCAGGTTGAGGGCGTCATACATTTTGAGGATGACACGGAAGAGCTGCAACAATGGGATCAACAGGTGATTTAGTTTCTAACGTGCTTGGAATCTACTTTATGTTTCTTTTCTCATGGAAATCTACCTTTTTCCTGTTGAAATCTAAAAAGGAGAAAGGAAAAGGGTGTGGTTCATTGATGTCTATTAGTATGCCTCTAGATCTAAACATATTCATCAGAACACTCTTTAATTTGTTGATAACTTGATCAAGTTTTAATATATGTTATATAACATTTTCTGCTCACCATCGAACACTGGAAAAACATTTTTCATGAAAAATGACTTTCGTTATACCAAGCTCCGTCTTTCTTGTTTTAAGGTTTTATTATTGAAATGATACTAGTGTTGACAACATTGCTAATCTTTGCAGATCATGGGCCTTTGTCAAGCTCTCAATGATGTTCTTGATAGCATGGCAAAGAAGGGGCTCCCTATTCCTGTCTAGTTCATTTTGTGGTCATTTTTGAAGAATCTGGTACGATGCTGATGCACTCCTTCCTCGTACCATTTACTGGA</genome_strand>
        <mrna_strand>ACAAATT-GGTGACGAAGAAATCGATGAAGCTGCCTTAGAGCAAGCTCTGGCAGCTGCTGTGACGTGCACAATTTTGGCTGCAGCAGGTCCTCAACGATCTCGTGTACTTGCCACACTGTACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCGTTGCTCCAAATTGAAAATCTACCCAATCTTGCAGAAG..................................................................................................................................................................................................GTCTATCTAGAGAGAATCTTGAGAAAACCTGAAATTGATGCTTTTGCAGAAGAGTTGAAACCACATCAG................................................................................................CAAGCACTTTTACCTGATAACTTCACAGTTCTGGATCGTGCTATGATTGAGCACAATCTCTTGAGTGCTAGCAAACTTTATACAAATATAAG........................................................................................................TTTTGATGAGTTGGGCACTTGGTTGGGCATTCCTCCTCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAATTGCTTCAAGAATGATTTTCGAAGATAGAATGCGGGGATCCATTGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGCGTCATACATTTTGAGGATGACACGGAAGAGCTGCAACAATGGGATCAACAG..........................................................................................................................................................................................................................................................................................................................................................ATCATGGGCCTTTGTCAAGCTCTCAATGATGTTCTTGATAGCATGGCAAAGAAGGGGCTCCCTATTCCTGTCTAGTTCATTTTGTGGTCATTTTTGAAGAATCTGGTACGATGCTGATGCACTCCTTCCTCGTACCATTTACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E254479" ref_strand="+" ref_description="SGN-E254479 [cLEG-27-P6]">
      <seq>acaaattggtgacgaagaaatcgatgaagctgccttagagcaagctctggcagctgctgtgacgtgcacaattttggctgcagcaggtcctcaacgatctcgtgtacttgccacactgtacaaagatgagcgttgctccaaattgaaaatctacccaatcttgcagaaggtctatctagagagaatcttgagaaaacctgaaattgatgcttttgcagaagagttgaaaccacatcagcaagcacttttacctgataacttcacagttctggatcgtgctatgattgagcacaatctcttgagtgctagcaaactttatacaaatataagttttgatgagttgggcactttgttgggcattcctcctcaaaaggctgagaaaattgcttcaagaatgattttcgaagatagaatgcggggatccattgatcaggttgagggcgtcatacattttgaggatgacacggaagagctgcaacaatgggatcaacagatcatgggcctttgtcaagctctcaatgatgttcttgatagcatggcaaagaaggggctccctattcctgtctagttcaatttgtggtcatttttgaagaatctggtacgatgctgatgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11" g_stop="135" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136" i_stop="925" i_length="790">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="926" g_stop="970" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="169" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="971" i_stop="1164" i_length="194">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1165" g_stop="1233" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="238" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1234" i_stop="1329" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1330" g_stop="1421" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="330" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1422" i_stop="1525" i_length="104">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1526" g_stop="1568" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="373" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1569" i_stop="2453" i_length="885">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2454" g_stop="2513" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="433" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2514" i_stop="2904" i_length="391">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2905" g_stop="2964" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="493" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2965" i_stop="3310" i_length="346">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3311" g_stop="3434" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="617" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E254479" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11" e_stop="135"/>
          <exon e_start="926" e_stop="970"/>
          <exon e_start="1165" e_stop="1233"/>
          <exon e_start="1330" e_stop="1421"/>
          <exon e_start="1526" e_stop="1568"/>
          <exon e_start="2454" e_stop="2513"/>
          <exon e_start="2905" e_stop="2964"/>
          <exon e_start="3311" e_stop="3434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTACGCTACAGAGAAATCGATGAAGCTGCCTTAGAGCAAGCTCTGGCAGCTGCTGTGACGTGCACAATTTTGGCTGCAGCAGGTCCTCAACGATCTCGTGTACTTGCCACACTGTACAAAGTAAGGATGCAATGACTTAGAGCTTTAAATGTTTTGATTGTTATTGTAAAGAGTGCAACTAATGGGTAGGTTGTTGTGGAAGTTATCCTCTGTGGAGTTGTTGAATGAATGATTTAATGGTATTTTTATATATTTGAGTATTGGGATTAATATTATCACGGCTGTATCTTGAATTATTGAAGTTAGTAATGTCATTTGTAATTATGATGTTATAAGCTATAATCCTTTCCATCCTTATGAGGTAGGTTAACTGAGTAAGGTCTGCGTAGACCCCCAGTTGTAAGATATATTCCTTTCTGGAAATCGTGGGCTGCTAAATTCAAAGAAGATTACGCATTGCCTTCTTCCTTATGCCCCCAGAGTTCGCATCTTTCTTGTGCTTCTCACTTTAGTAGCACTGTTTGTAATAACTAATAGCTGTATGAACTTCTAATTCAATGGTTTGATATTTGCTCTCGTTTGCCAAGATTGTGAGACCACTCATGGTAAAGGGCAGGTGCATTGCACCAAGGAAATGGTAACAACTAACCATAAATAGGTGATTTTATATTTGGTGGACATGTCATTCTGTTGTCTAATACCTGCTAATATTTTGCTGTTACGATAACCTTTGAAAATTTGAGGTTAATTAGTTTTCTCGGGCAACTTCCAGTTGAGATCTGCCACTATGTAGTCATATTTGTATTTTTTTAATGGGTCTCAAATGACTGCCTACACTGATCCCCTCCTATGTGCTATTTGTTCAGTTTTGCTATAACAATTTTTCTTTTTTACTTATTTTGGATAACAGGATGAGCGTTGCTCCAAATTGAAAATCTACCCAATCTTGCAGAAGGTACTTCACTTGCTGCTTCATACAATTTGCATAGCTCTGTCTCCACTCTCTTTACTTGTACCGAGTTTCCTTTATGCTATAAGCTCTTTGCATTTGAGTGTGGATTTTTTATGTGCATATAGTGTTGTGTCAGATTTTTTACGTAGATACTATTTTTTTTAAAAATAAAGTTTTGTTTAATTTGAAATATTCAGGTCTATCTAGAGAGAATCTTGAGAAAACCTGAAATTGATGCTTTTGCAGAAGAGTTGAAACCACATCAGGTTCCCCCCTTTTTTGGGTATTGCTTTTTTTTTCAAAATGTCAAAATACATTATCTGATATTCGCTGTTTATCTTATTTTTTTGTGTTTCCTACAGCAAGCACTTTTACCTGATAACTTCACAGTTCTGGATCGTGCTATGATTGAGCACAATCTCTTGAGTGCTAGCAAACTTTATACAAATATAAGGTAGAAAGGAAGCTTATCTTTCCCTTGTTTTTTGTGATTTAGATTTTTCATAGCTCATGCTTTTCTATTATCTCAAGCTAAATCCCCTCATTAATCTGTGACAGTTTTGATGAGTTGGGCACTTTGTTGGGCATTCCTCCTCAAAAGGTACCTAATGATGTTGCTAAGCTATTTTTCTTAATTTTTGCTGTTCTTGGGCTAATTTTTTGGGTTTTGCTGTCAACCCACTAGCCCGAGTTGATGCATAGCAGTTGCGACTGTTGTAGGAACTATACGAAAATAGGAGGTTTTAGCCTTTTAGGGCGGTTGGTGGCTCGGTTAATCTATTTGCAGTAATTCTTAGTGGTCCCCTCTGGACCATTTATTGAGCGACATTTAATCTTCAAAGCAATTATCAAATGAAGAAACAGATAAATTGTTCTCTCATGCTATGCTGCAAAAAGCATATCTCCATCATCCTACTTATGCATTGTTTCTGGGTAAATCCACAAGTCAAGTTTAAACTGTAAACGCTATCAGGATGATAGAGAAGGTGATATTATTTTGAATGCATTTTTGAAGTTGATTCTTAGCCTATGCTGCTCAGCTTTTGAGGTCTTCTAGTAGAAATCTGATTTTGAGAAAAAGACGCTGCTTCACAGAATTTGGACATGCCTCTCCCGTTCTCGCTTATTTATTTCCATTTTTAATGTACTAAGATCAGTTTGCTGTTGTCTTGCCTGACAAGTAATTTAAACACCACACAACCAACACAATCTTACATGTTAAATACTGTTTTCTTCACAGTATTTGGACATGCCTCTCCCATTCTTGCATATTGATTTCCATTTTTATGTACTAAGATCAGTTTACTGTTGTGCTTGTCTGATAAGTAATTTAAACTCCATGTAACCAACGTAATCCTTCATGTCAAAGTGTTGCCATCACTCTTATTGCTTTCCATGGCTGTTTTGGGTACCAAAATCAATTAACAACTATGCGGCTTCATTTTCATCTGTAACTTATTCTGTTATAACAATTTTTGTCATGAAGGCTGAGAAAATTGCTTCAAGAATGATTTTCGAAGATAGAATGCGGGGATCCATTGATCAGGTAAATTTCTCAATTAGTAATGCCATCTACACATTCCTATCTTTGTCCTTGAAAAGAAGAGGAGATGATATTGGGTCATGACTTGTCACTGGCTAACTTTAGGTACAGAGTGTCCATATATGCCATATATACATACTTGAATTCCCTATGCTACCCGTAATGCTGATAGTAATATGCATGGATTGTAGTTTGATGTGGAAGATATTATCACATACGATAAATTTGTTTTTAAGCCATTGTATAGTAATTATCCGCGACTATCACACGAGATGTATTTAACGAGCAATATATGCAAATATAATATCAAACTGGATAAATATGGTTGGAGACAAAAAAAATGAGTTCCATTGTAGTTTTAGCATCTATTAATTTAAGTTGATTTTATTGTCAGGTTGAGGGCGTCATACATTTTGAGGATGACACGGAAGAGCTGCAACAATGGGATCAACAGGTGATTTAGTTTCTAACGTGCTTGGAATCTACTTTATGTTTCTTTTCTCATGGAAATCTACCTTTTTCCTGTTGAAATCTAAAAAGGAGAAAGGAAAAGGGTGTGGTTCATTGATGTCTATTAGTATGCCTCTAGATCTAAACATATTCATCAGAACACTCTTTAATTTGTTGATAACTTGATCAAGTTTTAATATATGTTATATAACATTTTCTGCTCACCATCGAACACTGGAAAAACATTTTTCATGAAAAATGACTTTCGTTATACCAAGCTCCGTCTTTCTTGTTTTAAGGTTTTATTATTGAAATGATACTAGTGTTGACAACATTGCTAATCTTTGCAGATCATGGGCCTTTGTCAAGCTCTCAATGATGTTCTTGATAGCATGGCAAAGAAGGGGCTCCCTATTCCTGTCTAGTTCATTTTGTGGTCATTTTTGAAGAATCTGGTACGATGCTGATGCACTC</genome_strand>
        <mrna_strand>ACAAATT-GGTGACGAAGAAATCGATGAAGCTGCCTTAGAGCAAGCTCTGGCAGCTGCTGTGACGTGCACAATTTTGGCTGCAGCAGGTCCTCAACGATCTCGTGTACTTGCCACACTGTACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCGTTGCTCCAAATTGAAAATCTACCCAATCTTGCAGAAG..................................................................................................................................................................................................GTCTATCTAGAGAGAATCTTGAGAAAACCTGAAATTGATGCTTTTGCAGAAGAGTTGAAACCACATCAG................................................................................................CAAGCACTTTTACCTGATAACTTCACAGTTCTGGATCGTGCTATGATTGAGCACAATCTCTTGAGTGCTAGCAAACTTTATACAAATATAAG........................................................................................................TTTTGATGAGTTGGGCACTTTGTTGGGCATTCCTCCTCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAATTGCTTCAAGAATGATTTTCGAAGATAGAATGCGGGGATCCATTGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGCGTCATACATTTTGAGGATGACACGGAAGAGCTGCAACAATGGGATCAACAG..........................................................................................................................................................................................................................................................................................................................................................ATCATGGGCCTTTGTCAAGCTCTCAATGATGTTCTTGATAGCATGGCAAAGAAGGGGCTCCCTATTCCTGTCTAGTTCAATTTGTGGTCATTTTTGAAGAATCTGGTACGATGCTGATGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E253881" ref_strand="+" ref_description="SGN-E253881 [cLEG-28-A6]">
      <seq>acaaattggtgacgaagaaatcgatgaagctgccttagagcaagctctggcagctgctgtgacgtgcacaattttggctgcagcaggtcctcaacgatctcgtgtacttgccacactgtacaaagatgagcgttgctccaaattgaaaatctacccaatcttgcagaaggtctatctagagagaatcttgagaaaacctgaaattgatgcttttgcagaagagttgaaaccacatcagcaagcacttttacctgataacttcacagttctggatcgtgctatgattgagcacaatctcttgagtgctagcaaactttatacaaatataagttttgatgagttgggcactttgttgggcattcctcctcaaaaggctgagaaaattgcttcaagaatgattttcgaagatagaatgcggggatccattgatcaggttgagggcgtcatacattttgaggatgacacggaagagctgcaacaatgggatcaacagatcatgggcctttgtcaagctctcaatgatgttcttgatagcatggcaaagaaggggctccctattcctgtctagttcattttgtggtcatttttgaagaatctggtacgatgctgatgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11" g_stop="135" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136" i_stop="925" i_length="790">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="926" g_stop="970" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="169" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="971" i_stop="1164" i_length="194">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1165" g_stop="1233" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="238" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1234" i_stop="1329" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1330" g_stop="1421" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="330" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1422" i_stop="1525" i_length="104">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1526" g_stop="1568" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="373" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1569" i_stop="2453" i_length="885">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2454" g_stop="2513" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="433" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2514" i_stop="2904" i_length="391">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2905" g_stop="2964" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="493" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2965" i_stop="3310" i_length="346">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3311" g_stop="3434" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="617" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E253881" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11" e_stop="135"/>
          <exon e_start="926" e_stop="970"/>
          <exon e_start="1165" e_stop="1233"/>
          <exon e_start="1330" e_stop="1421"/>
          <exon e_start="1526" e_stop="1568"/>
          <exon e_start="2454" e_stop="2513"/>
          <exon e_start="2905" e_stop="2964"/>
          <exon e_start="3311" e_stop="3434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTACGCTACAGAGAAATCGATGAAGCTGCCTTAGAGCAAGCTCTGGCAGCTGCTGTGACGTGCACAATTTTGGCTGCAGCAGGTCCTCAACGATCTCGTGTACTTGCCACACTGTACAAAGTAAGGATGCAATGACTTAGAGCTTTAAATGTTTTGATTGTTATTGTAAAGAGTGCAACTAATGGGTAGGTTGTTGTGGAAGTTATCCTCTGTGGAGTTGTTGAATGAATGATTTAATGGTATTTTTATATATTTGAGTATTGGGATTAATATTATCACGGCTGTATCTTGAATTATTGAAGTTAGTAATGTCATTTGTAATTATGATGTTATAAGCTATAATCCTTTCCATCCTTATGAGGTAGGTTAACTGAGTAAGGTCTGCGTAGACCCCCAGTTGTAAGATATATTCCTTTCTGGAAATCGTGGGCTGCTAAATTCAAAGAAGATTACGCATTGCCTTCTTCCTTATGCCCCCAGAGTTCGCATCTTTCTTGTGCTTCTCACTTTAGTAGCACTGTTTGTAATAACTAATAGCTGTATGAACTTCTAATTCAATGGTTTGATATTTGCTCTCGTTTGCCAAGATTGTGAGACCACTCATGGTAAAGGGCAGGTGCATTGCACCAAGGAAATGGTAACAACTAACCATAAATAGGTGATTTTATATTTGGTGGACATGTCATTCTGTTGTCTAATACCTGCTAATATTTTGCTGTTACGATAACCTTTGAAAATTTGAGGTTAATTAGTTTTCTCGGGCAACTTCCAGTTGAGATCTGCCACTATGTAGTCATATTTGTATTTTTTTAATGGGTCTCAAATGACTGCCTACACTGATCCCCTCCTATGTGCTATTTGTTCAGTTTTGCTATAACAATTTTTCTTTTTTACTTATTTTGGATAACAGGATGAGCGTTGCTCCAAATTGAAAATCTACCCAATCTTGCAGAAGGTACTTCACTTGCTGCTTCATACAATTTGCATAGCTCTGTCTCCACTCTCTTTACTTGTACCGAGTTTCCTTTATGCTATAAGCTCTTTGCATTTGAGTGTGGATTTTTTATGTGCATATAGTGTTGTGTCAGATTTTTTACGTAGATACTATTTTTTTTAAAAATAAAGTTTTGTTTAATTTGAAATATTCAGGTCTATCTAGAGAGAATCTTGAGAAAACCTGAAATTGATGCTTTTGCAGAAGAGTTGAAACCACATCAGGTTCCCCCCTTTTTTGGGTATTGCTTTTTTTTTCAAAATGTCAAAATACATTATCTGATATTCGCTGTTTATCTTATTTTTTTGTGTTTCCTACAGCAAGCACTTTTACCTGATAACTTCACAGTTCTGGATCGTGCTATGATTGAGCACAATCTCTTGAGTGCTAGCAAACTTTATACAAATATAAGGTAGAAAGGAAGCTTATCTTTCCCTTGTTTTTTGTGATTTAGATTTTTCATAGCTCATGCTTTTCTATTATCTCAAGCTAAATCCCCTCATTAATCTGTGACAGTTTTGATGAGTTGGGCACTTTGTTGGGCATTCCTCCTCAAAAGGTACCTAATGATGTTGCTAAGCTATTTTTCTTAATTTTTGCTGTTCTTGGGCTAATTTTTTGGGTTTTGCTGTCAACCCACTAGCCCGAGTTGATGCATAGCAGTTGCGACTGTTGTAGGAACTATACGAAAATAGGAGGTTTTAGCCTTTTAGGGCGGTTGGTGGCTCGGTTAATCTATTTGCAGTAATTCTTAGTGGTCCCCTCTGGACCATTTATTGAGCGACATTTAATCTTCAAAGCAATTATCAAATGAAGAAACAGATAAATTGTTCTCTCATGCTATGCTGCAAAAAGCATATCTCCATCATCCTACTTATGCATTGTTTCTGGGTAAATCCACAAGTCAAGTTTAAACTGTAAACGCTATCAGGATGATAGAGAAGGTGATATTATTTTGAATGCATTTTTGAAGTTGATTCTTAGCCTATGCTGCTCAGCTTTTGAGGTCTTCTAGTAGAAATCTGATTTTGAGAAAAAGACGCTGCTTCACAGAATTTGGACATGCCTCTCCCGTTCTCGCTTATTTATTTCCATTTTTAATGTACTAAGATCAGTTTGCTGTTGTCTTGCCTGACAAGTAATTTAAACACCACACAACCAACACAATCTTACATGTTAAATACTGTTTTCTTCACAGTATTTGGACATGCCTCTCCCATTCTTGCATATTGATTTCCATTTTTATGTACTAAGATCAGTTTACTGTTGTGCTTGTCTGATAAGTAATTTAAACTCCATGTAACCAACGTAATCCTTCATGTCAAAGTGTTGCCATCACTCTTATTGCTTTCCATGGCTGTTTTGGGTACCAAAATCAATTAACAACTATGCGGCTTCATTTTCATCTGTAACTTATTCTGTTATAACAATTTTTGTCATGAAGGCTGAGAAAATTGCTTCAAGAATGATTTTCGAAGATAGAATGCGGGGATCCATTGATCAGGTAAATTTCTCAATTAGTAATGCCATCTACACATTCCTATCTTTGTCCTTGAAAAGAAGAGGAGATGATATTGGGTCATGACTTGTCACTGGCTAACTTTAGGTACAGAGTGTCCATATATGCCATATATACATACTTGAATTCCCTATGCTACCCGTAATGCTGATAGTAATATGCATGGATTGTAGTTTGATGTGGAAGATATTATCACATACGATAAATTTGTTTTTAAGCCATTGTATAGTAATTATCCGCGACTATCACACGAGATGTATTTAACGAGCAATATATGCAAATATAATATCAAACTGGATAAATATGGTTGGAGACAAAAAAAATGAGTTCCATTGTAGTTTTAGCATCTATTAATTTAAGTTGATTTTATTGTCAGGTTGAGGGCGTCATACATTTTGAGGATGACACGGAAGAGCTGCAACAATGGGATCAACAGGTGATTTAGTTTCTAACGTGCTTGGAATCTACTTTATGTTTCTTTTCTCATGGAAATCTACCTTTTTCCTGTTGAAATCTAAAAAGGAGAAAGGAAAAGGGTGTGGTTCATTGATGTCTATTAGTATGCCTCTAGATCTAAACATATTCATCAGAACACTCTTTAATTTGTTGATAACTTGATCAAGTTTTAATATATGTTATATAACATTTTCTGCTCACCATCGAACACTGGAAAAACATTTTTCATGAAAAATGACTTTCGTTATACCAAGCTCCGTCTTTCTTGTTTTAAGGTTTTATTATTGAAATGATACTAGTGTTGACAACATTGCTAATCTTTGCAGATCATGGGCCTTTGTCAAGCTCTCAATGATGTTCTTGATAGCATGGCAAAGAAGGGGCTCCCTATTCCTGTCTAGTTCATTTTGTGGTCATTTTTGAAGAATCTGGTACGATGCTGATGCACTC</genome_strand>
        <mrna_strand>ACAAATT-GGTGACGAAGAAATCGATGAAGCTGCCTTAGAGCAAGCTCTGGCAGCTGCTGTGACGTGCACAATTTTGGCTGCAGCAGGTCCTCAACGATCTCGTGTACTTGCCACACTGTACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCGTTGCTCCAAATTGAAAATCTACCCAATCTTGCAGAAG..................................................................................................................................................................................................GTCTATCTAGAGAGAATCTTGAGAAAACCTGAAATTGATGCTTTTGCAGAAGAGTTGAAACCACATCAG................................................................................................CAAGCACTTTTACCTGATAACTTCACAGTTCTGGATCGTGCTATGATTGAGCACAATCTCTTGAGTGCTAGCAAACTTTATACAAATATAAG........................................................................................................TTTTGATGAGTTGGGCACTTTGTTGGGCATTCCTCCTCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAATTGCTTCAAGAATGATTTTCGAAGATAGAATGCGGGGATCCATTGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGCGTCATACATTTTGAGGATGACACGGAAGAGCTGCAACAATGGGATCAACAG..........................................................................................................................................................................................................................................................................................................................................................ATCATGGGCCTTTGTCAAGCTCTCAATGATGTTCTTGATAGCATGGCAAAGAAGGGGCTCCCTATTCCTGTCTAGTTCATTTTGTGGTCATTTTTGAAGAATCTGGTACGATGCTGATGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E257115" ref_strand="+" ref_description="SGN-E257115 [cLEG-44-P12]">
      <seq>acaaattggtgacgaagaaatcgatgaagctgccttagagcaagctctggcagctgctgtgacgtgcacaattttggctgcagcaggtcctcaacgatctcgtgtacttgccacactgtacaaagatgagcgttgctccaaattgaaaatctacccaatcttgcagaaggtctatctagagagaatcttgagaaaacctgaaattgatgcttttgcagaagagttgaaaccacatcagcaagcacttttacctgataacttcacagttctggatcgtgctatgattgagcacaatctcttgagtgctagcaaactttatacaaatataagttttgatgagttgggcactttgttgggcattcctcctcaaaaggctgagaaaattgcttcaagaatgattttcgaagatagaatgcggggatccattgatcaggttgagggcgtcatacattttgaggatgacacggaagagctgcaacaatgggatcaacagatcatgggcctttgtcaagctctcaatgatgttcttgatagcatggcaaagaaggggctccctattcctgtctagttcattttgtggtcatttttgaagaatctggtacgatgctgatgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11" g_stop="135" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136" i_stop="925" i_length="790">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="926" g_stop="970" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="169" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="971" i_stop="1164" i_length="194">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1165" g_stop="1233" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="238" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1234" i_stop="1329" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1330" g_stop="1421" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="330" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1422" i_stop="1525" i_length="104">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1526" g_stop="1568" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="373" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1569" i_stop="2453" i_length="885">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2454" g_stop="2513" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="433" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2514" i_stop="2904" i_length="391">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2905" g_stop="2964" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="493" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2965" i_stop="3310" i_length="346">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3311" g_stop="3433" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="616" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E257115" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11" e_stop="135"/>
          <exon e_start="926" e_stop="970"/>
          <exon e_start="1165" e_stop="1233"/>
          <exon e_start="1330" e_stop="1421"/>
          <exon e_start="1526" e_stop="1568"/>
          <exon e_start="2454" e_stop="2513"/>
          <exon e_start="2905" e_stop="2964"/>
          <exon e_start="3311" e_stop="3433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTACGCTACAGAGAAATCGATGAAGCTGCCTTAGAGCAAGCTCTGGCAGCTGCTGTGACGTGCACAATTTTGGCTGCAGCAGGTCCTCAACGATCTCGTGTACTTGCCACACTGTACAAAGTAAGGATGCAATGACTTAGAGCTTTAAATGTTTTGATTGTTATTGTAAAGAGTGCAACTAATGGGTAGGTTGTTGTGGAAGTTATCCTCTGTGGAGTTGTTGAATGAATGATTTAATGGTATTTTTATATATTTGAGTATTGGGATTAATATTATCACGGCTGTATCTTGAATTATTGAAGTTAGTAATGTCATTTGTAATTATGATGTTATAAGCTATAATCCTTTCCATCCTTATGAGGTAGGTTAACTGAGTAAGGTCTGCGTAGACCCCCAGTTGTAAGATATATTCCTTTCTGGAAATCGTGGGCTGCTAAATTCAAAGAAGATTACGCATTGCCTTCTTCCTTATGCCCCCAGAGTTCGCATCTTTCTTGTGCTTCTCACTTTAGTAGCACTGTTTGTAATAACTAATAGCTGTATGAACTTCTAATTCAATGGTTTGATATTTGCTCTCGTTTGCCAAGATTGTGAGACCACTCATGGTAAAGGGCAGGTGCATTGCACCAAGGAAATGGTAACAACTAACCATAAATAGGTGATTTTATATTTGGTGGACATGTCATTCTGTTGTCTAATACCTGCTAATATTTTGCTGTTACGATAACCTTTGAAAATTTGAGGTTAATTAGTTTTCTCGGGCAACTTCCAGTTGAGATCTGCCACTATGTAGTCATATTTGTATTTTTTTAATGGGTCTCAAATGACTGCCTACACTGATCCCCTCCTATGTGCTATTTGTTCAGTTTTGCTATAACAATTTTTCTTTTTTACTTATTTTGGATAACAGGATGAGCGTTGCTCCAAATTGAAAATCTACCCAATCTTGCAGAAGGTACTTCACTTGCTGCTTCATACAATTTGCATAGCTCTGTCTCCACTCTCTTTACTTGTACCGAGTTTCCTTTATGCTATAAGCTCTTTGCATTTGAGTGTGGATTTTTTATGTGCATATAGTGTTGTGTCAGATTTTTTACGTAGATACTATTTTTTTTAAAAATAAAGTTTTGTTTAATTTGAAATATTCAGGTCTATCTAGAGAGAATCTTGAGAAAACCTGAAATTGATGCTTTTGCAGAAGAGTTGAAACCACATCAGGTTCCCCCCTTTTTTGGGTATTGCTTTTTTTTTCAAAATGTCAAAATACATTATCTGATATTCGCTGTTTATCTTATTTTTTTGTGTTTCCTACAGCAAGCACTTTTACCTGATAACTTCACAGTTCTGGATCGTGCTATGATTGAGCACAATCTCTTGAGTGCTAGCAAACTTTATACAAATATAAGGTAGAAAGGAAGCTTATCTTTCCCTTGTTTTTTGTGATTTAGATTTTTCATAGCTCATGCTTTTCTATTATCTCAAGCTAAATCCCCTCATTAATCTGTGACAGTTTTGATGAGTTGGGCACTTTGTTGGGCATTCCTCCTCAAAAGGTACCTAATGATGTTGCTAAGCTATTTTTCTTAATTTTTGCTGTTCTTGGGCTAATTTTTTGGGTTTTGCTGTCAACCCACTAGCCCGAGTTGATGCATAGCAGTTGCGACTGTTGTAGGAACTATACGAAAATAGGAGGTTTTAGCCTTTTAGGGCGGTTGGTGGCTCGGTTAATCTATTTGCAGTAATTCTTAGTGGTCCCCTCTGGACCATTTATTGAGCGACATTTAATCTTCAAAGCAATTATCAAATGAAGAAACAGATAAATTGTTCTCTCATGCTATGCTGCAAAAAGCATATCTCCATCATCCTACTTATGCATTGTTTCTGGGTAAATCCACAAGTCAAGTTTAAACTGTAAACGCTATCAGGATGATAGAGAAGGTGATATTATTTTGAATGCATTTTTGAAGTTGATTCTTAGCCTATGCTGCTCAGCTTTTGAGGTCTTCTAGTAGAAATCTGATTTTGAGAAAAAGACGCTGCTTCACAGAATTTGGACATGCCTCTCCCGTTCTCGCTTATTTATTTCCATTTTTAATGTACTAAGATCAGTTTGCTGTTGTCTTGCCTGACAAGTAATTTAAACACCACACAACCAACACAATCTTACATGTTAAATACTGTTTTCTTCACAGTATTTGGACATGCCTCTCCCATTCTTGCATATTGATTTCCATTTTTATGTACTAAGATCAGTTTACTGTTGTGCTTGTCTGATAAGTAATTTAAACTCCATGTAACCAACGTAATCCTTCATGTCAAAGTGTTGCCATCACTCTTATTGCTTTCCATGGCTGTTTTGGGTACCAAAATCAATTAACAACTATGCGGCTTCATTTTCATCTGTAACTTATTCTGTTATAACAATTTTTGTCATGAAGGCTGAGAAAATTGCTTCAAGAATGATTTTCGAAGATAGAATGCGGGGATCCATTGATCAGGTAAATTTCTCAATTAGTAATGCCATCTACACATTCCTATCTTTGTCCTTGAAAAGAAGAGGAGATGATATTGGGTCATGACTTGTCACTGGCTAACTTTAGGTACAGAGTGTCCATATATGCCATATATACATACTTGAATTCCCTATGCTACCCGTAATGCTGATAGTAATATGCATGGATTGTAGTTTGATGTGGAAGATATTATCACATACGATAAATTTGTTTTTAAGCCATTGTATAGTAATTATCCGCGACTATCACACGAGATGTATTTAACGAGCAATATATGCAAATATAATATCAAACTGGATAAATATGGTTGGAGACAAAAAAAATGAGTTCCATTGTAGTTTTAGCATCTATTAATTTAAGTTGATTTTATTGTCAGGTTGAGGGCGTCATACATTTTGAGGATGACACGGAAGAGCTGCAACAATGGGATCAACAGGTGATTTAGTTTCTAACGTGCTTGGAATCTACTTTATGTTTCTTTTCTCATGGAAATCTACCTTTTTCCTGTTGAAATCTAAAAAGGAGAAAGGAAAAGGGTGTGGTTCATTGATGTCTATTAGTATGCCTCTAGATCTAAACATATTCATCAGAACACTCTTTAATTTGTTGATAACTTGATCAAGTTTTAATATATGTTATATAACATTTTCTGCTCACCATCGAACACTGGAAAAACATTTTTCATGAAAAATGACTTTCGTTATACCAAGCTCCGTCTTTCTTGTTTTAAGGTTTTATTATTGAAATGATACTAGTGTTGACAACATTGCTAATCTTTGCAGATCATGGGCCTTTGTCAAGCTCTCAATGATGTTCTTGATAGCATGGCAAAGAAGGGGCTCCCTATTCCTGTCTAGTTCATTTTGTGGTCATTTTTGAAGAATCTGGTACGATGCTGATGCACT</genome_strand>
        <mrna_strand>ACAAATT-GGTGACGAAGAAATCGATGAAGCTGCCTTAGAGCAAGCTCTGGCAGCTGCTGTGACGTGCACAATTTTGGCTGCAGCAGGTCCTCAACGATCTCGTGTACTTGCCACACTGTACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCGTTGCTCCAAATTGAAAATCTACCCAATCTTGCAGAAG..................................................................................................................................................................................................GTCTATCTAGAGAGAATCTTGAGAAAACCTGAAATTGATGCTTTTGCAGAAGAGTTGAAACCACATCAG................................................................................................CAAGCACTTTTACCTGATAACTTCACAGTTCTGGATCGTGCTATGATTGAGCACAATCTCTTGAGTGCTAGCAAACTTTATACAAATATAAG........................................................................................................TTTTGATGAGTTGGGCACTTTGTTGGGCATTCCTCCTCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAATTGCTTCAAGAATGATTTTCGAAGATAGAATGCGGGGATCCATTGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGCGTCATACATTTTGAGGATGACACGGAAGAGCTGCAACAATGGGATCAACAG..........................................................................................................................................................................................................................................................................................................................................................ATCATGGGCCTTTGTCAAGCTCTCAATGATGTTCTTGATAGCATGGCAAAGAAGGGGCTCCCTATTCCTGTCTAGTTCATTTTGTGGTCATTTTTGAAGAATCTGGTACGATGCTGATGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E714900" ref_strand="+" ref_description="SGN-E714900 [FB12DA12]">
      <seq>ggatcgtgctatgattgagcacaatctcttgagtgctagcaaactttatacaaatataagttttgatgagttgggcactttgttgggcattcctcctcaaaaggctgagaaaattgcttcaagaatgattttcgaagatagaatgcggggatccattgatcaggttgagggcgtcatacattttgaggatgacactgaagagctgcaacaatgggatcaacagatcatgggcctttgtcaagctctcaatgatgttcttgatagcatggcaaagaaggggctccctattcctgtctagttcattttgtggtcatttttgaagaatctggtacgatgctgatgcactccttcctcataccatttactggactggcgccactctatactttcaccagttttaaaacttggctcggaactcgtctctttaagttagatttatattgtacatgacacacctctcctccagttcaatggtttattatggatataaatgttaattttgttacatttctcttttanaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1062" stop="43291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1362" g_stop="1421" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1422" i_stop="1525" i_length="104">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1526" g_stop="1568" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="103" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1569" i_stop="2453" i_length="885">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2454" g_stop="2513" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="163" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2514" i_stop="2904" i_length="391">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2905" g_stop="2964" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="223" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2965" i_stop="3310" i_length="346">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3311" g_stop="3606" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="518" r_length="295" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3607" i_stop="3870" i_length="264">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.093" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3871" g_stop="3891" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="539" r_length="21" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E714900" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1362" e_stop="1421"/>
          <exon e_start="1526" e_stop="1568"/>
          <exon e_start="2454" e_stop="2513"/>
          <exon e_start="2905" e_stop="2964"/>
          <exon e_start="3311" e_stop="3606"/>
          <exon e_start="3871" e_stop="3891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCGTGCTATGATTGAGCACAATCTCTTGAGTGCTAGCAAACTTTATACAAATATAAGGTAGAAAGGAAGCTTATCTTTCCCTTGTTTTTTGTGATTTAGATTTTTCATAGCTCATGCTTTTCTATTATCTCAAGCTAAATCCCCTCATTAATCTGTGACAGTTTTGATGAGTTGGGCACTTTGTTGGGCATTCCTCCTCAAAAGGTACCTAATGATGTTGCTAAGCTATTTTTCTTAATTTTTGCTGTTCTTGGGCTAATTTTTTGGGTTTTGCTGTCAACCCACTAGCCCGAGTTGATGCATAGCAGTTGCGACTGTTGTAGGAACTATACGAAAATAGGAGGTTTTAGCCTTTTAGGGCGGTTGGTGGCTCGGTTAATCTATTTGCAGTAATTCTTAGTGGTCCCCTCTGGACCATTTATTGAGCGACATTTAATCTTCAAAGCAATTATCAAATGAAGAAACAGATAAATTGTTCTCTCATGCTATGCTGCAAAAAGCATATCTCCATCATCCTACTTATGCATTGTTTCTGGGTAAATCCACAAGTCAAGTTTAAACTGTAAACGCTATCAGGATGATAGAGAAGGTGATATTATTTTGAATGCATTTTTGAAGTTGATTCTTAGCCTATGCTGCTCAGCTTTTGAGGTCTTCTAGTAGAAATCTGATTTTGAGAAAAAGACGCTGCTTCACAGAATTTGGACATGCCTCTCCCGTTCTCGCTTATTTATTTCCATTTTTAATGTACTAAGATCAGTTTGCTGTTGTCTTGCCTGACAAGTAATTTAAACACCACACAACCAACACAATCTTACATGTTAAATACTGTTTTCTTCACAGTATTTGGACATGCCTCTCCCATTCTTGCATATTGATTTCCATTTTTATGTACTAAGATCAGTTTACTGTTGTGCTTGTCTGATAAGTAATTTAAACTCCATGTAACCAACGTAATCCTTCATGTCAAAGTGTTGCCATCACTCTTATTGCTTTCCATGGCTGTTTTGGGTACCAAAATCAATTAACAACTATGCGGCTTCATTTTCATCTGTAACTTATTCTGTTATAACAATTTTTGTCATGAAGGCTGAGAAAATTGCTTCAAGAATGATTTTCGAAGATAGAATGCGGGGATCCATTGATCAGGTAAATTTCTCAATTAGTAATGCCATCTACACATTCCTATCTTTGTCCTTGAAAAGAAGAGGAGATGATATTGGGTCATGACTTGTCACTGGCTAACTTTAGGTACAGAGTGTCCATATATGCCATATATACATACTTGAATTCCCTATGCTACCCGTAATGCTGATAGTAATATGCATGGATTGTAGTTTGATGTGGAAGATATTATCACATACGATAAATTTGTTTTTAAGCCATTGTATAGTAATTATCCGCGACTATCACACGAGATGTATTTAACGAGCAATATATGCAAATATAATATCAAACTGGATAAATATGGTTGGAGACAAAAAAAATGAGTTCCATTGTAGTTTTAGCATCTATTAATTTAAGTTGATTTTATTGTCAGGTTGAGGGCGTCATACATTTTGAGGATGACACGGAAGAGCTGCAACAATGGGATCAACAGGTGATTTAGTTTCTAACGTGCTTGGAATCTACTTTATGTTTCTTTTCTCATGGAAATCTACCTTTTTCCTGTTGAAATCTAAAAAGGAGAAAGGAAAAGGGTGTGGTTCATTGATGTCTATTAGTATGCCTCTAGATCTAAACATATTCATCAGAACACTCTTTAATTTGTTGATAACTTGATCAAGTTTTAATATATGTTATATAACATTTTCTGCTCACCATCGAACACTGGAAAAACATTTTTCATGAAAAATGACTTTCGTTATACCAAGCTCCGTCTTTCTTGTTTTAAGGTTTTATTATTGAAATGATACTAGTGTTGACAACATTGCTAATCTTTGCAGATCATGGGCCTTTGTCAAGCTCTCAATGATGTTCTTGATAGCATGGCAAAGAAGGGGCTCCCTATTCCTGTCTAGTTCATTTTGTGGTCATTTTTGAAGAATCTGGTACGATGCTGATGCACTCCTTCCTCGTACCATTTACTGGACTGGCGCCACTCTATACTTTCACCAGTTTTAAAACTTTGCTCGGAACTCGTCTCTTTAAGTTAGATTTATATTGTACATGACACACCTCTCCTCCAAGTTCAATGGTTTATTATGGATATAAATGTTAATTTTGTTACATTTCTCTTTTCATAGGGTACTTGTAGGCATTGTATTCTATTCAAATCATAACTGATTACTTTGTGCCATTTCCTGATTTTACCTTCACCGACTGATTATAAAAATGAGCGGACATGGAGTATTTATTATTACTGCTCGTTTGCACTCGGTGTAACTTTTGTAGTCTAATTTTGTTAGTCTAAGCAACTTTCGGTATCATCCACGGCAGTGTTCTAATTTACCAGAGTTTTAACAAGTTCTGGTACATAAGGACATTTCCAAACATTTTCAAATAGCATGAGAAAAAGGAAGAGAGA</genome_strand>
        <mrna_strand>GGATCGTGCTATGATTGAGCACAATCTCTTGAGTGCTAGCAAACTTTATACAAATATAAG........................................................................................................TTTTGATGAGTTGGGCACTTTGTTGGGCATTCCTCCTCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAATTGCTTCAAGAATGATTTTCGAAGATAGAATGCGGGGATCCATTGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGCGTCATACATTTTGAGGATGACACTGAAGAGCTGCAACAATGGGATCAACAG..........................................................................................................................................................................................................................................................................................................................................................ATCATGGGCCTTTGTCAAGCTCTCAATGATGTTCTTGATAGCATGGCAAAGAAGGGGCTCCCTATTCCTGTCTAGTTCATTTTGTGGTCATTTTTGAAGAATCTGGTACGATGCTGATGCACTCCTTCCTCATACCATTTACTGGACTGGCGCCACTCTATACTTTCACCAGTTTTAAAACTTGGCTCGGAACTCGTCTCTTTAAGTTAGATTTATATTGTACATGACACACCTCTCCTCC-AGTTCAATGGTTTATTATGGATATAAATGTTAATTTTGTTACATTTCTCTTTTA........................................................................................................................................................................................................................................................................NAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E350829" ref_strand="+" ref_description="SGN-E350829 [cTOS-7-G7]">
      <seq>gaaggtatgtctctccatctcgctattctggtggaacggcaggtgcctatagaacaaattctgctgatacaaattctaggtctgcctctgttgatcccaactttagaactacctcggagttaaaatttagggggacgaatctagaaacaccaggttttccaaaaaggagagatagcctgtttgtaaacagtcaaattgtggatgatggcaagtaacctgcagttcatgtatggtacatgtgtttcagcaccatactgtcatttggacacgtggggaagctgacaatctatagctgtaactttgcaacgggttactcgtattgagaggaaataaaaagaacattttgagctttcagttctgattgccttaaattgataatcaaggttaagcagatgtctgttaacaattttttctctcttttccatttatgctaaatatttattccaagtatgcgcgcaatccatctgtaaattcagttctagtggagattattcatatagtggttgaaagatatctgagtttgagatcaaggcggaannagatagcagaacccccaccccaaatagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="19482" stop="18307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19182" g_stop="18607" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E350829" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19182" e_stop="18607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTATGTCTCTCCATCTCGCTATTCTGGTGGAACGGCAGGTGCCTATAGAACAAATTCTGCTGATACAAATTCTAGGTCTGCCTCTGTTGATCCCAACTTTAGAACTACCTCGGAGTTAAAATTTAGGGGGACGAATCTAGAAACACCAGGTTTTCCAAAAAGGAGAGATAGCCTGTTTGTAAACAGTCAAATTGTGGATGATGGCAAGTAACCTGCAGTTCATGTATGGTACATGTGTTTCAGCACCATACTGTCATTTGGACACGTGGGGAAGCTGACAATCTATAGCTGTAACTTTGCAACGGGTTACTCGTATTGAGAGGAAATAAAAAGAACATTTTGAGCTTTCAGTTCTGATTGCCTTAAATTGATAATCAAGGTTAAGCAGATGTCTGTTAACAATTTTTTCTCTCTTTTCCATTTATGCTAAATATTTATTCCAAGTATGCGCGCAATCCATCTGTAAATTCAGTTCTAGTGGAGATTATTCATATAGTGGTTGAAAGATATCTGAGTTTGAGATCAAGGCGGAA-AAGATAAGCAGAACCCCCACCCCAAATAGAAAAAAGAAA</genome_strand>
        <mrna_strand>GAAGGTATGTCTCTCCATCTCGCTATTCTGGTGGAACGGCAGGTGCCTATAGAACAAATTCTGCTGATACAAATTCTAGGTCTGCCTCTGTTGATCCCAACTTTAGAACTACCTCGGAGTTAAAATTTAGGGGGACGAATCTAGAAACACCAGGTTTTCCAAAAAGGAGAGATAGCCTGTTTGTAAACAGTCAAATTGTGGATGATGGCAAGTAACCTGCAGTTCATGTATGGTACATGTGTTTCAGCACCATACTGTCATTTGGACACGTGGGGAAGCTGACAATCTATAGCTGTAACTTTGCAACGGGTTACTCGTATTGAGAGGAAATAAAAAGAACATTTTGAGCTTTCAGTTCTGATTGCCTTAAATTGATAATCAAGGTTAAGCAGATGTCTGTTAACAATTTTTTCTCTCTTTTCCATTTATGCTAAATATTTATTCCAAGTATGCGCGCAATCCATCTGTAAATTCAGTTCTAGTGGAGATTATTCATATAGTGGTTGAAAGATATCTGAGTTTGAGATCAAGGCGGAANNAGAT-AGCAGAACCCCCACCCCAAATAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E349325" ref_strand="+" ref_description="SGN-E349325 [cTOS-1-O13]">
      <seq>gaaggtatgtctctccatctcgctattctggtggaacggcaggtgcctatagaacaaattctgctgatacaaattctaggtctgcctctgttgatcccaactttagaactacctcggagttaaaatttagggggacgaatctagaaacaccaggttttccaaaaaggagagatagcctgtttgtaaacagtcaaattgtggatgatggcaagtaacctgcagttcatgtatggtacatgtgtttcagcaccatactgtcatttggacacgtggggaagctgacaatctatagctgtaactttgcaacgggttactcgtattgagaggaaataaaaagaacatttntgagctttcagttctgattgccttaaattgataatcaaggttaagcagatgtctgttaacaattttttctctcttttccatttatgctaaatatttattccaagtatgcgcgcaatccatctgtaaattcagttctagtggagattattcatatagtggttgaaagatatctgagtttgagatcaaggcggaaaagataagcagaacccccaccccaaatagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="19482" stop="18307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19182" g_stop="18607" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E349325" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19182" e_stop="18607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTATGTCTCTCCATCTCGCTATTCTGGTGGAACGGCAGGTGCCTATAGAACAAATTCTGCTGATACAAATTCTAGGTCTGCCTCTGTTGATCCCAACTTTAGAACTACCTCGGAGTTAAAATTTAGGGGGACGAATCTAGAAACACCAGGTTTTCCAAAAAGGAGAGATAGCCTGTTTGTAAACAGTCAAATTGTGGATGATGGCAAGTAACCTGCAGTTCATGTATGGTACATGTGTTTCAGCACCATACTGTCATTTGGACACGTGGGGAAGCTGACAATCTATAGCTGTAACTTTGCAACGGGTTACTCGTATTGAGAGGAAATAAAAAGAACATTT-TGAGCTTTCAGTTCTGATTGCCTTAAATTGATAATCAAGGTTAAGCAGATGTCTGTTAACAATTTTTTCTCTCTTTTCCATTTATGCTAAATATTTATTCCAAGTATGCGCGCAATCCATCTGTAAATTCAGTTCTAGTGGAGATTATTCATATAGTGGTTGAAAGATATCTGAGTTTGAGATCAAGGCGGAAAAGATAAGCAGAACCCCCACCCCAAATAGAAAAAAGAAA</genome_strand>
        <mrna_strand>GAAGGTATGTCTCTCCATCTCGCTATTCTGGTGGAACGGCAGGTGCCTATAGAACAAATTCTGCTGATACAAATTCTAGGTCTGCCTCTGTTGATCCCAACTTTAGAACTACCTCGGAGTTAAAATTTAGGGGGACGAATCTAGAAACACCAGGTTTTCCAAAAAGGAGAGATAGCCTGTTTGTAAACAGTCAAATTGTGGATGATGGCAAGTAACCTGCAGTTCATGTATGGTACATGTGTTTCAGCACCATACTGTCATTTGGACACGTGGGGAAGCTGACAATCTATAGCTGTAACTTTGCAACGGGTTACTCGTATTGAGAGGAAATAAAAAGAACATTTNTGAGCTTTCAGTTCTGATTGCCTTAAATTGATAATCAAGGTTAAGCAGATGTCTGTTAACAATTTTTTCTCTCTTTTCCATTTATGCTAAATATTTATTCCAAGTATGCGCGCAATCCATCTGTAAATTCAGTTCTAGTGGAGATTATTCATATAGTGGTTGAAAGATATCTGAGTTTGAGATCAAGGCGGAAAAGATAAGCAGAACCCCCACCCCAAATAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E357084" ref_strand="+" ref_description="SGN-E357084 [cTOS-22-H5]">
      <seq>gaaggtatgtctctccatctcgctattctggtggaacggcaggtgcctatagaacaaattctgctgatacaaattctaggtctgcctctgttgatcccaactttagaactacctcggagttaaaatttagggggacgaatctagaaacaccaggttttccaaaaaggagagatagcctgtttgtaaacagtcaaattgtggatgatggcaagtaacctgcagttcatgtatggtacatgtgtttcagcaccatactgtcatttggacacgtgggggaagctgacaatctatagctgtaacttttgcacgggttactcgtattgagaggaaataaaaagaacatttttgagctttcagttctgatttgcttaaatttgatatcaaggttaagcagatgtctgttaaacaatttttctctcttttcccattatgctaaatatttattcccagtatgcgcgcaatccatctgtnaattcagttctagtggagattatcatatagtgggtgaaagatatctgagtttgagatcaaggggaaaagaatagcagacccccacccccaatagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="19482" stop="18311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19182" g_stop="18611" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E357084" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19182" e_stop="18611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTATGTCTCTCCATCTCGCTATTCTGGTGGAACGGCAGGTGCCTATAGAACAAATTCTGCTGATACAAATTCTAGGTCTGCCTCTGTTGATCCCAACTTTAGAACTACCTCGGAGTTAAAATTTAGGGGGACGAATCTAGAAACACCAGGTTTTCCAAAAAGGAGAGATAGCCTGTTTGTAAACAGTCAAATTGTGGATGATGGCAAGTAACCTGCAGTTCATGTATGGTACATGTGTTTCAGCACCATACTGTCATTTGGACACGT-GGGGAAGCTGACAATCTATAGCTGTAACTTTGCAACGGGTTACTCGTATTGAGAGGAAATAAAAAGAACA-TTTTGAGCTTTCAGTTCTGATTGCCTTAAA-TTGATAATCAAGGTTAAGCAGATGTCTGTTAACAATTTTTTCTCTCTTTTCCATTTATGCTAAATATTTATTCCAAGTATGCGCGCAATCCATCTGTAAATTCAGTTCTAGTGGAGATTATTCATATAGTGGTTGAAAGATATCTGAGTTTGAGATCAAGGCGGAAAAGATAAGCAGAACCCCCACCCCAAATAGAAAAAA</genome_strand>
        <mrna_strand>GAAGGTATGTCTCTCCATCTCGCTATTCTGGTGGAACGGCAGGTGCCTATAGAACAAATTCTGCTGATACAAATTCTAGGTCTGCCTCTGTTGATCCCAACTTTAGAACTACCTCGGAGTTAAAATTTAGGGGGACGAATCTAGAAACACCAGGTTTTCCAAAAAGGAGAGATAGCCTGTTTGTAAACAGTCAAATTGTGGATGATGGCAAGTAACCTGCAGTTCATGTATGGTACATGTGTTTCAGCACCATACTGTCATTTGGACACGTGGGGGAAGCTGACAATCTATAGCTGTAACTTTTGCACGGGTTACTCGTATTGAGAGGAAATAAAAAGAACATTTTTGAGCTTTCAGTTCTGATTTGCTTAAATTTGAT-ATCAAGGTTAAGCAGATGTCTGTTAAACAATTTTTCTCTCTTTTCCCATTATGCTAAATATTTATTCCCAGTATGCGCGCAATCCATCTGTNAATTCAGTTCTAGTGGAGATTA-TCATATAGTGGGTGAAAGATATCTGAGTTTGAGATCAAGG-GGAAAAGAATAGCAG-ACCCCCACCCCCAATAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E352474" ref_strand="+" ref_description="SGN-E352474 [cTOS-9-I7]">
      <seq>gaaggtatgtctctccatctcgctattctggtggaacggcaggtgcctatagaacaaattctgctgatacaaattctaggtctgcctctgttgatcccaactttagaactacctcggagttaaaatttagggggacgaatctagaaacaccaggttttccaaaaaggagagatagcctgtttgtaaacagtcaaattgtggatgatggcaagtaccctgcagttcatgtatggtacatgtgtttcagcaccatactgtcatttggacacgtggggaagctgacaatctatagctgtaactttgcaacgggttactcgtattgagaggaaataaaaagaacattttgagctttcagttctgattgccttaaattgataatcaaggttaagcagatgtctgttaacaattttttctctcttttccattatgctaaatatttattcccagtatgcgcgcaatccatctgtnaattcagttctagtggagatattcatatagtgggtgaaagatatctgagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="19482" stop="18360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19182" g_stop="18660" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E352474" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19182" e_stop="18660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTATGTCTCTCCATCTCGCTATTCTGGTGGAACGGCAGGTGCCTATAGAACAAATTCTGCTGATACAAATTCTAGGTCTGCCTCTGTTGATCCCAACTTTAGAACTACCTCGGAGTTAAAATTTAGGGGGACGAATCTAGAAACACCAGGTTTTCCAAAAAGGAGAGATAGCCTGTTTGTAAACAGTCAAATTGTGGATGATGGCAAGTAACCTGCAGTTCATGTATGGTACATGTGTTTCAGCACCATACTGTCATTTGGACACGTGGGGAAGCTGACAATCTATAGCTGTAACTTTGCAACGGGTTACTCGTATTGAGAGGAAATAAAAAGAACATTTTGAGCTTTCAGTTCTGATTGCCTTAAATTGATAATCAAGGTTAAGCAGATGTCTGTTAACAATTTTTTCTCTCTTTTCCATTTATGCTAAATATTTATTCCAAGTATGCGCGCAATCCATCTGTAAATTCAGTTCTAGTGGAGATTATTCATATAGTGGTTGAAAGATATCTGAGTTTG</genome_strand>
        <mrna_strand>GAAGGTATGTCTCTCCATCTCGCTATTCTGGTGGAACGGCAGGTGCCTATAGAACAAATTCTGCTGATACAAATTCTAGGTCTGCCTCTGTTGATCCCAACTTTAGAACTACCTCGGAGTTAAAATTTAGGGGGACGAATCTAGAAACACCAGGTTTTCCAAAAAGGAGAGATAGCCTGTTTGTAAACAGTCAAATTGTGGATGATGGCAAGTACCCTGCAGTTCATGTATGGTACATGTGTTTCAGCACCATACTGTCATTTGGACACGTGGGGAAGCTGACAATCTATAGCTGTAACTTTGCAACGGGTTACTCGTATTGAGAGGAAATAAAAAGAACATTTTGAGCTTTCAGTTCTGATTGCCTTAAATTGATAATCAAGGTTAAGCAGATGTCTGTTAACAATTTTTTCTCTCTTTTCCA-TTATGCTAAATATTTATTCCCAGTATGCGCGCAATCCATCTGTNAATTCAGTTCTAGTGGAGA-TATTCATATAGTGGGTGAAAGATATCTGAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E544174" ref_strand="-" ref_description="SGN-E544174 [TUS-66-F23]">
      <seq>accaaatgatataagcagaaaggttattcctttagttgccagtgatcaagaaaagctcgttattcttggccttggaagtggttacttggggatatatcgctcaaaccttccagttttcaaaaatgagttcaacactatgctgtggacgagtcctgtgttatttttcatcattttccttttaggtgcatattatttttttgccaagaaaaaggaagctcttacctcctggggacctgacgatcctttcccttctacgggtgttacaagtggcgctccaatgggatccagccagggtgacagatcttatcctgattcatcgaggaatgcagatctgatggatcttaggggtagtagcctcagaggtccatctggaaggtatgtctctccatctcgctattctggtggaacggcaggtgcctatagaacaaattctgctgatacaaattctaggtctgcctctgttgatcccaactttagaactacctcggagttaaaatttagggggacgaatctagaaacaccaggttttccaaaaaggagagatagcctgtttgtaaacagtcaaattgtggatgatggcaagtaacctgcagttcatgtatggtacatgtgtttcagcaccatactgtcatttggacacgtggggaagctgacaatctatagctgtaactttgcaacgggttactcgtattgagaggaaataaaaagaacattttgagctttcaaaaaaaaaagaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="19853" stop="18300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19553" g_stop="18829" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="726" polyA_stop="746"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E544174" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544174" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19553" e_stop="18829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAATGATAAAAGCAGAAAGGTTATTCCTTTAGTTGCCAGTGATCAAGAAAAGCTCGTTATTCTTGGCCTTGGAAGTGGTTACTTGGGGATATATCGCTCAAACCTTCCAGTTTTCAAAAATGAGTTCAACACTATGCTGTGGACGAGTCCTGTTTTATTTTTCATCATTTTCCTTTTAGGTGCATATTATTTTTTTGCCAAGAAAAAGGAAGCTCTTACCTCCTGGGGACCTGACGATCCTTTCCCTTCTACGGGTGTTACAAGTGGCGCTCCAATGGGATCCAGCCAGGGTGACAGATCTTATCCTGATTCATCGAGGAATGCAGATCTGATGGATCTTAGGGGTAGTAGCCTCAGAGGTCCATCTGGAAGGTATGTCTCTCCATCTCGCTATTCTGGTGGAACGGCAGGTGCCTATAGAACAAATTCTGCTGATACAAATTCTAGGTCTGCCTCTGTTGATCCCAACTTTAGAACTACCTCGGAGTTAAAATTTAGGGGGACGAATCTAGAAACACCAGGTTTTCCAAAAAGGAGAGATAGCCTGTTTGTAAACAGTCAAATTGTGGATGATGGCAAGTAACCTGCAGTTCATGTATGGTACATGTGTTTCAGCACCATACTGTCATTTGGACACGTGGGGAAGCTGACAATCTATAGCTGTAACTTTGCAACGGGTTACTCGTATTGAGAGGAAATAAAAAGAACATTTTGAGCTTTCA</genome_strand>
        <mrna_strand>ACCAAATGATATAAGCAGAAAGGTTATTCCTTTAGTTGCCAGTGATCAAGAAAAGCTCGTTATTCTTGGCCTTGGAAGTGGTTACTTGGGGATATATCGCTCAAACCTTCCAGTTTTCAAAAATGAGTTCAACACTATGCTGTGGACGAGTCCTGTGTTATTTTTCATCATTTTCCTTTTAGGTGCATATTATTTTTTTGCCAAGAAAAAGGAAGCTCTTACCTCCTGGGGACCTGACGATCCTTTCCCTTCTACGGGTGTTACAAGTGGCGCTCCAATGGGATCCAGCCAGGGTGACAGATCTTATCCTGATTCATCGAGGAATGCAGATCTGATGGATCTTAGGGGTAGTAGCCTCAGAGGTCCATCTGGAAGGTATGTCTCTCCATCTCGCTATTCTGGTGGAACGGCAGGTGCCTATAGAACAAATTCTGCTGATACAAATTCTAGGTCTGCCTCTGTTGATCCCAACTTTAGAACTACCTCGGAGTTAAAATTTAGGGGGACGAATCTAGAAACACCAGGTTTTCCAAAAAGGAGAGATAGCCTGTTTGTAAACAGTCAAATTGTGGATGATGGCAAGTAACCTGCAGTTCATGTATGGTACATGTGTTTCAGCACCATACTGTCATTTGGACACGTGGGGAAGCTGACAATCTATAGCTGTAACTTTGCAACGGGTTACTCGTATTGAGAGGAAATAAAAAGAACATTTTGAGCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E710519" ref_strand="+" ref_description="SGN-E710519 [FA55CG07]">
      <seq>cccacttgcgttcttgaaacaaaggctactatttctaactgacactggtgcagggtcattagacttgaggaccatgaagattagggaatctgaatgtgaaggtttaaacaattctattgctaagagttatgtatttgatgcaactgaacggtcgaaagcctatgggtttacatctgatggtgatttgattcatgtgctactcttaggtgataatatgaacttcaagtgcagggttagatccaaaaggaagttagagatggccgagcctctgtcttttcaagcgattaaaggatatttgcttgttgctaaccaggataaggtatcactgtataacgtgtcatcgctgcattacgtgcggtctggtggaccaagacaattgttctctgttggtcatgatgagattgtagcatcatttttgagctctcaatctttggaaccaaatgataaaagcagaaaggttattcctttagttgccagtgatcaagaaaagctcgttattcttggccttggaagtggttacttggggatatatcgctcaaaccttccagttttcaaaaatgagttcaacactatgctgtggacgagtcctgttttatttttcatcattttccttttaggtgcatattatttttttgccaagaaaaaggaagctcttacctcctggggacctgacgatcctttcccttctacgggtgttacaagtggcgctcccatgggatccagccagggtgacagatcttatcctgattcatcgaggaatgcaaatctgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="20287" stop="18915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19988" g_stop="19215" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E710519" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19988" e_stop="19215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTTGCGTTCTTGAAACAAAGGCTACTATTTCTAACTGAGACTGGTGCAGGGTCACTAGACTTGAGGACCATGAAGATTAGGGAATCTGAATGTGAAGGTTTAAACAATTCTATTGCTAAGAGTTATGTATTTGATGCAACTGAACGGTCGAAAGCCTATGGGTTTACATCTGATGGTGATTTGATTCATGTGCTACTCTTAGGTGATAATATGAACTTCAAGTGCAGGGTTAGATCCAAAAGGAAGTTAGAGATGGCCGAGCCTCTGTCTTTTCAAGCGATTAAAGGATATTTGCTTGTTGCTAACCAGGATAAGGTATCACTGTATAACGTGTCATCGCTGCATTACGTGCGGTCTGGTGGACCAAGACAATTGTTCTCTGTTGGTCATGATGAGATTGTAGCATCATTTTTGAGCTCTCAATCTTTGGAACCAAATGATAAAAGCAGAAAGGTTATTCCTTTAGTTGCCAGTGATCAAGAAAAGCTCGTTATTCTTGGCCTTGGAAGTGGTTACTTGGGGATATATCGCTCAAACCTTCCAGTTTTCAAAAATGAGTTCAACACTATGCTGTGGACGAGTCCTGTTTTATTTTTCATCATTTTCCTTTTAGGTGCATATTATTTTTTTGCCAAGAAAAAGGAAGCTCTTACCTCCTGGGGACCTGACGATCCTTTCCCTTCTACGGGTGTTACAAGTGGCGCTCCAATGGGATCCAGCCAGGGTGACAGATCTTATCCTGATTCATCGAGGAATGCAGATCTGATGGA</genome_strand>
        <mrna_strand>CCCACTTGCGTTCTTGAAACAAAGGCTACTATTTCTAACTGACACTGGTGCAGGGTCATTAGACTTGAGGACCATGAAGATTAGGGAATCTGAATGTGAAGGTTTAAACAATTCTATTGCTAAGAGTTATGTATTTGATGCAACTGAACGGTCGAAAGCCTATGGGTTTACATCTGATGGTGATTTGATTCATGTGCTACTCTTAGGTGATAATATGAACTTCAAGTGCAGGGTTAGATCCAAAAGGAAGTTAGAGATGGCCGAGCCTCTGTCTTTTCAAGCGATTAAAGGATATTTGCTTGTTGCTAACCAGGATAAGGTATCACTGTATAACGTGTCATCGCTGCATTACGTGCGGTCTGGTGGACCAAGACAATTGTTCTCTGTTGGTCATGATGAGATTGTAGCATCATTTTTGAGCTCTCAATCTTTGGAACCAAATGATAAAAGCAGAAAGGTTATTCCTTTAGTTGCCAGTGATCAAGAAAAGCTCGTTATTCTTGGCCTTGGAAGTGGTTACTTGGGGATATATCGCTCAAACCTTCCAGTTTTCAAAAATGAGTTCAACACTATGCTGTGGACGAGTCCTGTTTTATTTTTCATCATTTTCCTTTTAGGTGCATATTATTTTTTTGCCAAGAAAAAGGAAGCTCTTACCTCCTGGGGACCTGACGATCCTTTCCCTTCTACGGGTGTTACAAGTGGCGCTCCCATGGGATCCAGCCAGGGTGACAGATCTTATCCTGATTCATCGAGGAATGCAAATCTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E266885" ref_strand="+" ref_description="SGN-E266885 [cLEI-7-E5]">
      <seq>tcttgtccacggattctggtgggaaactctgggtttttagggagaatggaactgtttatggggtgacaacaccaaagagcaagccacttgcgttcttgaaacaaaggctactatttctaactgagactggtgcagggtcactagacttgaggaccatgaagattatggaatctgaatgtgaaggtttaaacaattctattgctaagagttatgtatttgatgcaactgaacggtcgaaagcctatgggtttacatctgatggtgatttgattcatgtgctactcttaggtgataatatgaacttcaagtgcaaggttagatccaaaaggaagttatagatggccgagcctctgtcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="20370" stop="19411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20070" g_stop="19711" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E266885" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20070" e_stop="19711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTCCACGGATTCTGGTGGGAAACTCTGGGTTTTTAGGGAGAATGGAACTGTTTATGGGGTGACAACACCAAAGAGCAGGCCACTTGCGTTCTTGAAACAAAGGCTACTATTTCTAACTGAGACTGGTGCAGGGTCACTAGACTTGAGGACCATGAAGATTAGGGAATCTGAATGTGAAGGTTTAAACAATTCTATTGCTAAGAGTTATGTATTTGATGCAACTGAACGGTCGAAAGCCTATGGGTTTACATCTGATGGTGATTTGATTCATGTGCTACTCTTAGGTGATAATATGAACTTCAAGTGCAGGGTTAGATCCAAAAGGAAGTTAGAGATGGCCGAGCCTCTGTCTTTTC</genome_strand>
        <mrna_strand>TCTTGTCCACGGATTCTGGTGGGAAACTCTGGGTTTTTAGGGAGAATGGAACTGTTTATGGGGTGACAACACCAAAGAGCAAGCCACTTGCGTTCTTGAAACAAAGGCTACTATTTCTAACTGAGACTGGTGCAGGGTCACTAGACTTGAGGACCATGAAGATTATGGAATCTGAATGTGAAGGTTTAAACAATTCTATTGCTAAGAGTTATGTATTTGATGCAACTGAACGGTCGAAAGCCTATGGGTTTACATCTGATGGTGATTTGATTCATGTGCTACTCTTAGGTGATAATATGAACTTCAAGTGCAAGGTTAGATCCAAAAGGAAGTTATAGATGGCCGAGCCTCTGTCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E246050" ref_strand="+" ref_description="SGN-E246050 [cLEF-54-K4]">
      <seq>gaagttttggttgaatttcagacgtcgatgagttcaccaataacagcctatgtgtcgtacttgtctgtttataagaatgagagtgtggttgttacggggcatgagaatggtgggattttgatgcatagaatttgggaggtagtagtacctgatggtgatgacaggacttctcttcgtatggaaactgtaggaaaatttgcttcaccggaaatcgaggaaggagggtcttcgattttaagtttagaggtgcatcatgttggaagaaataggtatatcttgtccacggattctggtgggaaactctgggtttttagggagaatggaactgtttatggggtgacaacaccaaagagcaggccacttgcgttcttgaaacaaaggctactatttctaactgagactggtgcagggtcactagacttgaggaccatgaagattagggaatctgaatgtgaaggtttaaacaattctattgctaagagttatgtatttgatgcaactgaacggtcgaaagcctatgggtttacatctgatggtgatttgattcatgtgctactcttaggtgataatatgaacttcaagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="20644" stop="19460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20344" g_stop="19760" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E246050" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20344" e_stop="19760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTTGGTTGAATTTCAGACGTCGATGAGTTCACCAATAACAGCCTATGTGTCGTACTTGTCTGTTTATAAGAATGAGAGTGTGGTTGTTACGGGGCATGAGAATGGTGGGATTTTGATGCATAGAATTTGGGAGGTAGTAGTACCTGATGGTGATGACAGGACTTCTCTTCGTATGGAAACTGTAGGAAAATTTGCTTCACCGGAAATCGAGGAAGGAGGGTCTTCGATTTTAAGTTTAGAGGTGCATCATGTTGGAAGAAATAGGTATATCTTGTCCACGGATTCTGGTGGGAAACTCTGGGTTTTTAGGGAGAATGGAACTGTTTATGGGGTGACAACACCAAAGAGCAGGCCACTTGCGTTCTTGAAACAAAGGCTACTATTTCTAACTGAGACTGGTGCAGGGTCACTAGACTTGAGGACCATGAAGATTAGGGAATCTGAATGTGAAGGTTTAAACAATTCTATTGCTAAGAGTTATGTATTTGATGCAACTGAACGGTCGAAAGCCTATGGGTTTACATCTGATGGTGATTTGATTCATGTGCTACTCTTAGGTGATAATATGAACTTCAAGTGC</genome_strand>
        <mrna_strand>GAAGTTTTGGTTGAATTTCAGACGTCGATGAGTTCACCAATAACAGCCTATGTGTCGTACTTGTCTGTTTATAAGAATGAGAGTGTGGTTGTTACGGGGCATGAGAATGGTGGGATTTTGATGCATAGAATTTGGGAGGTAGTAGTACCTGATGGTGATGACAGGACTTCTCTTCGTATGGAAACTGTAGGAAAATTTGCTTCACCGGAAATCGAGGAAGGAGGGTCTTCGATTTTAAGTTTAGAGGTGCATCATGTTGGAAGAAATAGGTATATCTTGTCCACGGATTCTGGTGGGAAACTCTGGGTTTTTAGGGAGAATGGAACTGTTTATGGGGTGACAACACCAAAGAGCAGGCCACTTGCGTTCTTGAAACAAAGGCTACTATTTCTAACTGAGACTGGTGCAGGGTCACTAGACTTGAGGACCATGAAGATTAGGGAATCTGAATGTGAAGGTTTAAACAATTCTATTGCTAAGAGTTATGTATTTGATGCAACTGAACGGTCGAAAGCCTATGGGTTTACATCTGATGGTGATTTGATTCATGTGCTACTCTTAGGTGATAATATGAACTTCAAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E548999" ref_strand="+" ref_description="SGN-E548999 [TUS-66-F23]">
      <seq>acaaagtatagtcctctttggttggaaaggtttcagtttatatcagcagtgagattaggatcagatgcaactagtatcaatgtgttaccatttagagatgctgaaggactgagtaagtatgtcgccattggcgatgatcgcgggaaagtgtatgcattctctagaaatggagaagttttggttgaatttcagacgtcgatgagttcaccaataacagcctatgtgtcgtacttgtctgtttataagaatgagagtgtggttgttacggggcatgagaatggtgggattttgatgcatagaatttgggaggtagtagtacctgatggtgatgacaggacttctcttcgtatggaaactgtaggaaaatttgcttcaccggaaatcgaggaaggagggtcttcgattttaagtttagaggtgcatcatgttggaagaaataggtatatcttgtccacggattctggtgggaaactctgggtttttagggagaatggaactgtttatggggtgacaacaccaaagagcaggccacttgcgttcttgaaacagaggctactatctctaactgagactggtgcagggtcactagacttgaggaccatgaagattagggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="20815" stop="19599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20515" g_stop="19899" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E548999" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20515" e_stop="19899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGTATAGTCCTCTTTGGTTGGAAAGGTTTCAGTTTATATCAGCAGTGAGATTAGGATCAGATGCAACTAGTATCAATGTGTTACCATTTAGAGATGCTGAAGGACTGAGTAAGTATGTCGCCATTGGCGATGATCGCGGGAAAGTGTATGCATTCTCTAGAAATGGAGAAGTTTTGGTTGAATTTCAGACGTCGATGAGTTCACCAATAACAGCCTATGTGTCGTACTTGTCTGTTTATAAGAATGAGAGTGTGGTTGTTACGGGGCATGAGAATGGTGGGATTTTGATGCATAGAATTTGGGAGGTAGTAGTACCTGATGGTGATGACAGGACTTCTCTTCGTATGGAAACTGTAGGAAAATTTGCTTCACCGGAAATCGAGGAAGGAGGGTCTTCGATTTTAAGTTTAGAGGTGCATCATGTTGGAAGAAATAGGTATATCTTGTCCACGGATTCTGGTGGGAAACTCTGGGTTTTTAGGGAGAATGGAACTGTTTATGGGGTGACAACACCAAAGAGCAGGCCACTTGCGTTCTTGAAACAAAGGCTACTATTTCTAACTGAGACTGGTGCAGGGTCACTAGACTTGAGGACCATGAAGATTAGGGAATC</genome_strand>
        <mrna_strand>ACAAAGTATAGTCCTCTTTGGTTGGAAAGGTTTCAGTTTATATCAGCAGTGAGATTAGGATCAGATGCAACTAGTATCAATGTGTTACCATTTAGAGATGCTGAAGGACTGAGTAAGTATGTCGCCATTGGCGATGATCGCGGGAAAGTGTATGCATTCTCTAGAAATGGAGAAGTTTTGGTTGAATTTCAGACGTCGATGAGTTCACCAATAACAGCCTATGTGTCGTACTTGTCTGTTTATAAGAATGAGAGTGTGGTTGTTACGGGGCATGAGAATGGTGGGATTTTGATGCATAGAATTTGGGAGGTAGTAGTACCTGATGGTGATGACAGGACTTCTCTTCGTATGGAAACTGTAGGAAAATTTGCTTCACCGGAAATCGAGGAAGGAGGGTCTTCGATTTTAAGTTTAGAGGTGCATCATGTTGGAAGAAATAGGTATATCTTGTCCACGGATTCTGGTGGGAAACTCTGGGTTTTTAGGGAGAATGGAACTGTTTATGGGGTGACAACACCAAAGAGCAGGCCACTTGCGTTCTTGAAACAGAGGCTACTATCTCTAACTGAGACTGGTGCAGGGTCACTAGACTTGAGGACCATGAAGATTAGGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E306838" ref_strand="+" ref_description="SGN-E306838 [cLEY-11-H17]">
      <seq>caaagtatagtcctctttggttggaaaggtttcagtttatatcagcagtgagattaggatcagatgcaactagtatcaatgtgttaccatttagagatgctgaaggactgagtaagtatgtcgccattggcgatgatcgcgggaaagtgtatgcattctctagaaatggagaagttttggttgaatttcagacgtcgatgagttcaccaataacagcctatgtgtcgtacttgtctgtttataagaatgagagtgtggttgttacggggcatgagaatggtgggattttgatgcatagaatttgggaggtagtagtacctgatggtgatgacaggacttctcttcgtatggaaactgtaggaaaatttgcttcaccggaaatcgaggaaggagggtcttcgattttaagtttagaggtgcatcatgttggaagaaataggtatatcttgtccacggattctggtgggaaactctgggtttttaaggagaatggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="20814" stop="19718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20514" g_stop="20018" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E306838" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20514" e_stop="20018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTATAGTCCTCTTTGGTTGGAAAGGTTTCAGTTTATATCAGCAGTGAGATTAGGATCAGATGCAACTAGTATCAATGTGTTACCATTTAGAGATGCTGAAGGACTGAGTAAGTATGTCGCCATTGGCGATGATCGCGGGAAAGTGTATGCATTCTCTAGAAATGGAGAAGTTTTGGTTGAATTTCAGACGTCGATGAGTTCACCAATAACAGCCTATGTGTCGTACTTGTCTGTTTATAAGAATGAGAGTGTGGTTGTTACGGGGCATGAGAATGGTGGGATTTTGATGCATAGAATTTGGGAGGTAGTAGTACCTGATGGTGATGACAGGACTTCTCTTCGTATGGAAACTGTAGGAAAATTTGCTTCACCGGAAATCGAGGAAGGAGGGTCTTCGATTTTAAGTTTAGAGGTGCATCATGTTGGAAGAAATAGGTATATCTTGTCCACGGATTCTGGTGGGAAACTCTGGGTTTTTAGGGAGAATGGAACT</genome_strand>
        <mrna_strand>CAAAGTATAGTCCTCTTTGGTTGGAAAGGTTTCAGTTTATATCAGCAGTGAGATTAGGATCAGATGCAACTAGTATCAATGTGTTACCATTTAGAGATGCTGAAGGACTGAGTAAGTATGTCGCCATTGGCGATGATCGCGGGAAAGTGTATGCATTCTCTAGAAATGGAGAAGTTTTGGTTGAATTTCAGACGTCGATGAGTTCACCAATAACAGCCTATGTGTCGTACTTGTCTGTTTATAAGAATGAGAGTGTGGTTGTTACGGGGCATGAGAATGGTGGGATTTTGATGCATAGAATTTGGGAGGTAGTAGTACCTGATGGTGATGACAGGACTTCTCTTCGTATGGAAACTGTAGGAAAATTTGCTTCACCGGAAATCGAGGAAGGAGGGTCTTCGATTTTAAGTTTAGAGGTGCATCATGTTGGAAGAAATAGGTATATCTTGTCCACGGATTCTGGTGGGAAACTCTGGGTTTTTAAGGAGAATGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E353935" ref_strand="+" ref_description="SGN-E353935 [cTOS-10-H20]">
      <seq>ggctaatcatgtcatgggctcaggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatacagcaaagaatgcgtgggacttcatggtatcacgtaaagtttatggggatgacgtgtttaaggctacttatcagacaacaagcaaaaatttggggctcgaatggtccaggagttctaagttaaatggatcatttaagatttgtgcatctctctgtttgcttgaggaacgcaaaatcccaaagttaagtgctgagacgtcgtgggactttgaaatgtgattctgtttcttctgcaataattcggatgtaactacttctggctacccttcataattgggtttcacctaatgttttctagctcaatttgttgattcacaagtgagctgttcgttttgctttgtaatcggtttatggttaccaacatgagtattgatccaaagttgttttttgtcaatcttccgatttcaagacacttccatgttttgatgccctgactttacctgaattaatgatttaaggctccatcaaaatgatgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="27123" stop="24151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26823" g_stop="26598" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26597" i_stop="24790" i_length="1808">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24789" g_stop="24449" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="567" r_length="341" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E353935" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26823" e_stop="26598"/>
          <exon e_start="24789" e_stop="24449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAGGTATAACTTTCAGGCTTTCCATCCATATTTTTCGTTGGCAATTTCCATTGCAATTGAATTACAAAGCTACTATTCAATAGTTTGCACTGAAATTTCAATTGGCTTGCTTATGTTTTTTGGGGCTTATTTCTGTTAGCTCTGTTTTTTTCTTAAAGCATTTGTGAATTTGTTGGCTCACTAGCTTGTTGATCTCATATTCCAACAAAAGTACTCGTATGGTGACACTGCTTTTAGAAGTTACTTGTTACTTACCAGAAAGTCGTCTTCTGGTGAACATTCCAGAATGCGTTGGAGGTGTACATTCTACTTCACTTGTATTTGCACTGGTCATGTACCAAAATTCTTCCTAAACGCCTGTTGGCCGTGTCATTGCAGACCTTTTGTAAACCACGGATGGAATAACCTGTAACTATATGATCCTTTTTTTAAAACATTAAGTGGTCGGAATGTAAATACCTCGGGATTTATCGAAGGTTAATGATGAAGGGATCGTAGTGCACTTGTATAAAGTCTCTGCGAGGTTTATTGATTTTGCTTGTTTCTTATCATTTCTGCTCAGTTATTAAACACACGTGTTGATGTCATTTTGCATTGTTCATATTGTGAGTCTGCATTCTCTGTCTAGTCTGAGAAGGGCCTACCCTCCCTGATGTCACAAGTTGATCAATTTCTTGTCTGGATGAAGGCTGCATGTTGAAAAATCTAAAAAATGGAAGTTCATTTGGTGGTTTTAATAATATAAATGTTCACATGTCATATTGATTCATAGACTCATTTGCTCGACTTTTCTGATTTTGATGTGCATCAATAAGCGTCCACAAAAGGATCTTTCACCCTGATAAGTGCAAGCGACCATTAAAGGTTATTCTACATTGGTATTGGTTCCCTGATTGTCATTTGATAGGGTCATATGATAGATCATGAACTTGGATACATATCTGGATTTTTTGCAGTTATGCCATTGCTTTTGTGGGAATTCAGCTTAGATCCATTATGTTGCCATAAATGTGTGCCAGTTTCAAAATGGCCTTCAATTGTTAATAGTGAATAAGACTGTTTTCATTAATGTTCACCTTCAAGTGATCTATATGCCATCAGAATGTGCAAAGAAATGCACAAATTATAACATCTATTATAGCCATGATATTTTATCAGCATCACTATTGTTATACATTCTGTGTGAAAATCTTTATCGAATTATTTGATAGTTTAACCATAATGACTTGTTTTTAAGCTTCTCGTTTTTACCCGTGAACCTCCTAATTGAATGTTCCCTGGTTTCTGATGATGTTTAAAATGAACACGAGTCATTTCTGCTAGGTTGTATCCTTATTCTGTAAATCAAAAAATTCACTCACTTCTATTGGATAATTCAGCGTAAAAAACTGATCAGCTGTTGTAGAATGAACTTCATAAGTGGACAGTTTCTTATTTTCATCTTTAAATTTTGAATTTGTTTGTGTCGTTTTTTCTTGTTTCCTTGTATCCTTCATGTATTATTTTGTTTTGATCGAATAGTAATGAGATCAACCTTATGGTAGCTCACTTCATGCTTGTCATTTGATTTTCCTCTGTGAAATAGACAATGTGGTTCCGAGACGCCCACACAGTGGGAACTTCATGCACATGCATTGCTGTCCTTTTTCTGTTCTTCTTTTAAATATATAAACCAGTGCTTCTTGATCTTGTGTTTAAGGTTTGGTTTATTGATAGATATTGAACTATGTAAAGCATCTAAAGAAATTCTTCATTTTTTGTTTTGATTCCCTGAGACCATTTCTGACTTAAGATTCTCTTCCTGTCTCCAGATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTTGTCAATCTTCCGATTTCAAGACACTTCCATGTTTTGATGCCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCAAAATGATGTATC</genome_strand>
        <mrna_strand>GGCTAATCATGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTTGTCAATCTTCCGATTTCAAGACACTTCCATGTTTTGATGCCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCAAAATGATGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E232566" ref_strand="-" ref_description="SGN-E232566 [cLEL-5-B10]">
      <seq>gagcccatctatgatacagcaaagaatgcgtgggacttcatggtatcacgtaaagtttatggggatgacgtgtttaaggctacttatcagacaacaagcaaaaatttggggctcgaatggtccaggagttctaagttaaatggatcatttaagatttgtgcatctctctgtttgcttgaggaacgcaaaatcccaaagttaagtgctgagacgtcgtgggactttgaaatgtgattctgtttcttctgcaataattcggatgtaactacttctggctacccttcataattgggtttcacctaatgttttctagctcaatttgttgattcacaagtgagctgttcgttttgctttgtaatcggtttatggttaccaacatgagtattgatccaaagttgttttttgtcaatcttccgatttcaagacacttccatgttttgatgccctgactttacctgaattaatgatttaaggctccatcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="27050" stop="24158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26750" g_stop="26598" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26597" i_stop="24790" i_length="1808">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24789" g_stop="24454" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="489" r_length="336" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="500"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E232566" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232566" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26750" e_stop="26598"/>
          <exon e_start="24789" e_stop="24454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAGGTATAACTTTCAGGCTTTCCATCCATATTTTTCGTTGGCAATTTCCATTGCAATTGAATTACAAAGCTACTATTCAATAGTTTGCACTGAAATTTCAATTGGCTTGCTTATGTTTTTTGGGGCTTATTTCTGTTAGCTCTGTTTTTTTCTTAAAGCATTTGTGAATTTGTTGGCTCACTAGCTTGTTGATCTCATATTCCAACAAAAGTACTCGTATGGTGACACTGCTTTTAGAAGTTACTTGTTACTTACCAGAAAGTCGTCTTCTGGTGAACATTCCAGAATGCGTTGGAGGTGTACATTCTACTTCACTTGTATTTGCACTGGTCATGTACCAAAATTCTTCCTAAACGCCTGTTGGCCGTGTCATTGCAGACCTTTTGTAAACCACGGATGGAATAACCTGTAACTATATGATCCTTTTTTTAAAACATTAAGTGGTCGGAATGTAAATACCTCGGGATTTATCGAAGGTTAATGATGAAGGGATCGTAGTGCACTTGTATAAAGTCTCTGCGAGGTTTATTGATTTTGCTTGTTTCTTATCATTTCTGCTCAGTTATTAAACACACGTGTTGATGTCATTTTGCATTGTTCATATTGTGAGTCTGCATTCTCTGTCTAGTCTGAGAAGGGCCTACCCTCCCTGATGTCACAAGTTGATCAATTTCTTGTCTGGATGAAGGCTGCATGTTGAAAAATCTAAAAAATGGAAGTTCATTTGGTGGTTTTAATAATATAAATGTTCACATGTCATATTGATTCATAGACTCATTTGCTCGACTTTTCTGATTTTGATGTGCATCAATAAGCGTCCACAAAAGGATCTTTCACCCTGATAAGTGCAAGCGACCATTAAAGGTTATTCTACATTGGTATTGGTTCCCTGATTGTCATTTGATAGGGTCATATGATAGATCATGAACTTGGATACATATCTGGATTTTTTGCAGTTATGCCATTGCTTTTGTGGGAATTCAGCTTAGATCCATTATGTTGCCATAAATGTGTGCCAGTTTCAAAATGGCCTTCAATTGTTAATAGTGAATAAGACTGTTTTCATTAATGTTCACCTTCAAGTGATCTATATGCCATCAGAATGTGCAAAGAAATGCACAAATTATAACATCTATTATAGCCATGATATTTTATCAGCATCACTATTGTTATACATTCTGTGTGAAAATCTTTATCGAATTATTTGATAGTTTAACCATAATGACTTGTTTTTAAGCTTCTCGTTTTTACCCGTGAACCTCCTAATTGAATGTTCCCTGGTTTCTGATGATGTTTAAAATGAACACGAGTCATTTCTGCTAGGTTGTATCCTTATTCTGTAAATCAAAAAATTCACTCACTTCTATTGGATAATTCAGCGTAAAAAACTGATCAGCTGTTGTAGAATGAACTTCATAAGTGGACAGTTTCTTATTTTCATCTTTAAATTTTGAATTTGTTTGTGTCGTTTTTTCTTGTTTCCTTGTATCCTTCATGTATTATTTTGTTTTGATCGAATAGTAATGAGATCAACCTTATGGTAGCTCACTTCATGCTTGTCATTTGATTTTCCTCTGTGAAATAGACAATGTGGTTCCGAGACGCCCACACAGTGGGAACTTCATGCACATGCATTGCTGTCCTTTTTCTGTTCTTCTTTTAAATATATAAACCAGTGCTTCTTGATCTTGTGTTTAAGGTTTGGTTTATTGATAGATATTGAACTATGTAAAGCATCTAAAGAAATTCTTCATTTTTTGTTTTGATTCCCTGAGACCATTTCTGACTTAAGATTCTCTTCCTGTCTCCAGATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTTGTCAATCTTCCGATTTCAAGACACTTCCATGTTTTGATGCCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCAAAATGAT</genome_strand>
        <mrna_strand>GAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTTGTCAATCTTCCGATTTCAAGACACTTCCATGTTTTGATGCCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E230185" ref_strand="-" ref_description="SGN-E230185 [cLEL-33-I10]">
      <seq>tatcacgtaaagtttatgggaatgacgtgtttaaggctacttatcagacaacaaagcaaaaatttggggctcgaatggtccaggagttctaagttaaatggatcatttaagatttgtgcatctctctgtttgcttgaggaacgcaaaatcccaaagttaagtgctgagacgtcgtgggactttgaaatgtgattctgtttcttctgcaataattcggatgtaactacttctggctacccttcataattgggtttcacctaatgttttctagctcaatttgttgattcacaagtgagctgttcgttttgctttgtaatcggtttatggttaccaacatgagtattgatccaagttgttttttgtcaatcttccgatttcaagacacttccatgttttgatgccctgactttacctgaattaatgatttaaggctccatcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="27007" stop="24158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26707" g_stop="26598" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26597" i_stop="24790" i_length="1808">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24789" g_stop="24454" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="446" r_length="335" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="447" polyA_stop="464"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E230185" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230185" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26707" e_stop="26598"/>
          <exon e_start="24789" e_stop="24454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAAC-AAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAGGTATAACTTTCAGGCTTTCCATCCATATTTTTCGTTGGCAATTTCCATTGCAATTGAATTACAAAGCTACTATTCAATAGTTTGCACTGAAATTTCAATTGGCTTGCTTATGTTTTTTGGGGCTTATTTCTGTTAGCTCTGTTTTTTTCTTAAAGCATTTGTGAATTTGTTGGCTCACTAGCTTGTTGATCTCATATTCCAACAAAAGTACTCGTATGGTGACACTGCTTTTAGAAGTTACTTGTTACTTACCAGAAAGTCGTCTTCTGGTGAACATTCCAGAATGCGTTGGAGGTGTACATTCTACTTCACTTGTATTTGCACTGGTCATGTACCAAAATTCTTCCTAAACGCCTGTTGGCCGTGTCATTGCAGACCTTTTGTAAACCACGGATGGAATAACCTGTAACTATATGATCCTTTTTTTAAAACATTAAGTGGTCGGAATGTAAATACCTCGGGATTTATCGAAGGTTAATGATGAAGGGATCGTAGTGCACTTGTATAAAGTCTCTGCGAGGTTTATTGATTTTGCTTGTTTCTTATCATTTCTGCTCAGTTATTAAACACACGTGTTGATGTCATTTTGCATTGTTCATATTGTGAGTCTGCATTCTCTGTCTAGTCTGAGAAGGGCCTACCCTCCCTGATGTCACAAGTTGATCAATTTCTTGTCTGGATGAAGGCTGCATGTTGAAAAATCTAAAAAATGGAAGTTCATTTGGTGGTTTTAATAATATAAATGTTCACATGTCATATTGATTCATAGACTCATTTGCTCGACTTTTCTGATTTTGATGTGCATCAATAAGCGTCCACAAAAGGATCTTTCACCCTGATAAGTGCAAGCGACCATTAAAGGTTATTCTACATTGGTATTGGTTCCCTGATTGTCATTTGATAGGGTCATATGATAGATCATGAACTTGGATACATATCTGGATTTTTTGCAGTTATGCCATTGCTTTTGTGGGAATTCAGCTTAGATCCATTATGTTGCCATAAATGTGTGCCAGTTTCAAAATGGCCTTCAATTGTTAATAGTGAATAAGACTGTTTTCATTAATGTTCACCTTCAAGTGATCTATATGCCATCAGAATGTGCAAAGAAATGCACAAATTATAACATCTATTATAGCCATGATATTTTATCAGCATCACTATTGTTATACATTCTGTGTGAAAATCTTTATCGAATTATTTGATAGTTTAACCATAATGACTTGTTTTTAAGCTTCTCGTTTTTACCCGTGAACCTCCTAATTGAATGTTCCCTGGTTTCTGATGATGTTTAAAATGAACACGAGTCATTTCTGCTAGGTTGTATCCTTATTCTGTAAATCAAAAAATTCACTCACTTCTATTGGATAATTCAGCGTAAAAAACTGATCAGCTGTTGTAGAATGAACTTCATAAGTGGACAGTTTCTTATTTTCATCTTTAAATTTTGAATTTGTTTGTGTCGTTTTTTCTTGTTTCCTTGTATCCTTCATGTATTATTTTGTTTTGATCGAATAGTAATGAGATCAACCTTATGGTAGCTCACTTCATGCTTGTCATTTGATTTTCCTCTGTGAAATAGACAATGTGGTTCCGAGACGCCCACACAGTGGGAACTTCATGCACATGCATTGCTGTCCTTTTTCTGTTCTTCTTTTAAATATATAAACCAGTGCTTCTTGATCTTGTGTTTAAGGTTTGGTTTATTGATAGATATTGAACTATGTAAAGCATCTAAAGAAATTCTTCATTTTTTGTTTTGATTCCCTGAGACCATTTCTGACTTAAGATTCTCTTCCTGTCTCCAGATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTTGTCAATCTTCCGATTTCAAGACACTTCCATGTTTTGATGCCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCAAAATGAT</genome_strand>
        <mrna_strand>TATCACGTAAAGTTTATGGGAATGACGTGTTTAAGGCTACTTATCAGACAACAAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCC-AAGTTGTTTTTTGTCAATCTTCCGATTTCAAGACACTTCCATGTTTTGATGCCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E238734" ref_strand="-" ref_description="SGN-E238734 [cLEL-9-D14]">
      <seq>ggctacttatcagcaacaagcaaaatttggggctcgaatggccaggagttctaagttaaatggatcatttaagatttgtgcatctctctgtttgcttgaggaacgcaaaatcccaaagttaagtgctgagacgtcgtgggactttgaaatgtgattctgtttcttctgcaataattcggatgtaactacttctggctacccttcataattgggtttcacctaatgttttctagctcaatttgttgattcacaagtgagctgttcgttttgctttgtaatcggtttatggttaccaacatgagtattgatccaaagttgttttttgtcaatcttccgatttcaagacacttccatgttttgatgccctgactttacctgaattaatgatttaaggctccatcaaaatgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="26973" stop="24155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26673" g_stop="26598" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26597" i_stop="24790" i_length="1808">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24789" g_stop="24454" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="409" r_length="336" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="430"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E238734" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238734" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26673" e_stop="26598"/>
          <exon e_start="24789" e_stop="24454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAGGTATAACTTTCAGGCTTTCCATCCATATTTTTCGTTGGCAATTTCCATTGCAATTGAATTACAAAGCTACTATTCAATAGTTTGCACTGAAATTTCAATTGGCTTGCTTATGTTTTTTGGGGCTTATTTCTGTTAGCTCTGTTTTTTTCTTAAAGCATTTGTGAATTTGTTGGCTCACTAGCTTGTTGATCTCATATTCCAACAAAAGTACTCGTATGGTGACACTGCTTTTAGAAGTTACTTGTTACTTACCAGAAAGTCGTCTTCTGGTGAACATTCCAGAATGCGTTGGAGGTGTACATTCTACTTCACTTGTATTTGCACTGGTCATGTACCAAAATTCTTCCTAAACGCCTGTTGGCCGTGTCATTGCAGACCTTTTGTAAACCACGGATGGAATAACCTGTAACTATATGATCCTTTTTTTAAAACATTAAGTGGTCGGAATGTAAATACCTCGGGATTTATCGAAGGTTAATGATGAAGGGATCGTAGTGCACTTGTATAAAGTCTCTGCGAGGTTTATTGATTTTGCTTGTTTCTTATCATTTCTGCTCAGTTATTAAACACACGTGTTGATGTCATTTTGCATTGTTCATATTGTGAGTCTGCATTCTCTGTCTAGTCTGAGAAGGGCCTACCCTCCCTGATGTCACAAGTTGATCAATTTCTTGTCTGGATGAAGGCTGCATGTTGAAAAATCTAAAAAATGGAAGTTCATTTGGTGGTTTTAATAATATAAATGTTCACATGTCATATTGATTCATAGACTCATTTGCTCGACTTTTCTGATTTTGATGTGCATCAATAAGCGTCCACAAAAGGATCTTTCACCCTGATAAGTGCAAGCGACCATTAAAGGTTATTCTACATTGGTATTGGTTCCCTGATTGTCATTTGATAGGGTCATATGATAGATCATGAACTTGGATACATATCTGGATTTTTTGCAGTTATGCCATTGCTTTTGTGGGAATTCAGCTTAGATCCATTATGTTGCCATAAATGTGTGCCAGTTTCAAAATGGCCTTCAATTGTTAATAGTGAATAAGACTGTTTTCATTAATGTTCACCTTCAAGTGATCTATATGCCATCAGAATGTGCAAAGAAATGCACAAATTATAACATCTATTATAGCCATGATATTTTATCAGCATCACTATTGTTATACATTCTGTGTGAAAATCTTTATCGAATTATTTGATAGTTTAACCATAATGACTTGTTTTTAAGCTTCTCGTTTTTACCCGTGAACCTCCTAATTGAATGTTCCCTGGTTTCTGATGATGTTTAAAATGAACACGAGTCATTTCTGCTAGGTTGTATCCTTATTCTGTAAATCAAAAAATTCACTCACTTCTATTGGATAATTCAGCGTAAAAAACTGATCAGCTGTTGTAGAATGAACTTCATAAGTGGACAGTTTCTTATTTTCATCTTTAAATTTTGAATTTGTTTGTGTCGTTTTTTCTTGTTTCCTTGTATCCTTCATGTATTATTTTGTTTTGATCGAATAGTAATGAGATCAACCTTATGGTAGCTCACTTCATGCTTGTCATTTGATTTTCCTCTGTGAAATAGACAATGTGGTTCCGAGACGCCCACACAGTGGGAACTTCATGCACATGCATTGCTGTCCTTTTTCTGTTCTTCTTTTAAATATATAAACCAGTGCTTCTTGATCTTGTGTTTAAGGTTTGGTTTATTGATAGATATTGAACTATGTAAAGCATCTAAAGAAATTCTTCATTTTTTGTTTTGATTCCCTGAGACCATTTCTGACTTAAGATTCTCTTCCTGTCTCCAGATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTTGTCAATCTTCCGATTTCAAGACACTTCCATGTTTTGATGCCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCAAAATGAT</genome_strand>
        <mrna_strand>GGCTACTTATCAG-CAACAAGC-AAAATTTGGGGCTCGAATGG-CCAGGAGTTCTAAGTTAAATGGATCATTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTTGTCAATCTTCCGATTTCAAGACACTTCCATGTTTTGATGCCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCAAAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E238937" ref_strand="-" ref_description="SGN-E238937 [cLEL-9-D14]">
      <seq>ggctacttatcagacaacaagcaaaaatttggggctcgaatggtccaggagttctaagttaaatggatcatttaagatttgtgcatctctctgtttgcttgaggaacgcaaaatcccaaagttaagtgctgagacgtcgtgggactttgaaatgtgattctgtttcttctgcaataattcggatgtaactacttctggctacccttcataattgggtttcacctaatgttttctagctcaatttgttgattcacaagtgagctgttcgttttgctttgtaatcggtttatggttaccaacatgagtattgatccaaagttgttttttgtcaatcttccgatttcaagacacttccatgttttgatgccctgactttacctgaattaatgatttaaggctccatccaaatgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="26973" stop="24155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26673" g_stop="26598" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26597" i_stop="24790" i_length="1808">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24789" g_stop="24454" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="412" r_length="336" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="413" polyA_stop="433"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E238937" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238937" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26673" e_stop="26598"/>
          <exon e_start="24789" e_stop="24454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAGGTATAACTTTCAGGCTTTCCATCCATATTTTTCGTTGGCAATTTCCATTGCAATTGAATTACAAAGCTACTATTCAATAGTTTGCACTGAAATTTCAATTGGCTTGCTTATGTTTTTTGGGGCTTATTTCTGTTAGCTCTGTTTTTTTCTTAAAGCATTTGTGAATTTGTTGGCTCACTAGCTTGTTGATCTCATATTCCAACAAAAGTACTCGTATGGTGACACTGCTTTTAGAAGTTACTTGTTACTTACCAGAAAGTCGTCTTCTGGTGAACATTCCAGAATGCGTTGGAGGTGTACATTCTACTTCACTTGTATTTGCACTGGTCATGTACCAAAATTCTTCCTAAACGCCTGTTGGCCGTGTCATTGCAGACCTTTTGTAAACCACGGATGGAATAACCTGTAACTATATGATCCTTTTTTTAAAACATTAAGTGGTCGGAATGTAAATACCTCGGGATTTATCGAAGGTTAATGATGAAGGGATCGTAGTGCACTTGTATAAAGTCTCTGCGAGGTTTATTGATTTTGCTTGTTTCTTATCATTTCTGCTCAGTTATTAAACACACGTGTTGATGTCATTTTGCATTGTTCATATTGTGAGTCTGCATTCTCTGTCTAGTCTGAGAAGGGCCTACCCTCCCTGATGTCACAAGTTGATCAATTTCTTGTCTGGATGAAGGCTGCATGTTGAAAAATCTAAAAAATGGAAGTTCATTTGGTGGTTTTAATAATATAAATGTTCACATGTCATATTGATTCATAGACTCATTTGCTCGACTTTTCTGATTTTGATGTGCATCAATAAGCGTCCACAAAAGGATCTTTCACCCTGATAAGTGCAAGCGACCATTAAAGGTTATTCTACATTGGTATTGGTTCCCTGATTGTCATTTGATAGGGTCATATGATAGATCATGAACTTGGATACATATCTGGATTTTTTGCAGTTATGCCATTGCTTTTGTGGGAATTCAGCTTAGATCCATTATGTTGCCATAAATGTGTGCCAGTTTCAAAATGGCCTTCAATTGTTAATAGTGAATAAGACTGTTTTCATTAATGTTCACCTTCAAGTGATCTATATGCCATCAGAATGTGCAAAGAAATGCACAAATTATAACATCTATTATAGCCATGATATTTTATCAGCATCACTATTGTTATACATTCTGTGTGAAAATCTTTATCGAATTATTTGATAGTTTAACCATAATGACTTGTTTTTAAGCTTCTCGTTTTTACCCGTGAACCTCCTAATTGAATGTTCCCTGGTTTCTGATGATGTTTAAAATGAACACGAGTCATTTCTGCTAGGTTGTATCCTTATTCTGTAAATCAAAAAATTCACTCACTTCTATTGGATAATTCAGCGTAAAAAACTGATCAGCTGTTGTAGAATGAACTTCATAAGTGGACAGTTTCTTATTTTCATCTTTAAATTTTGAATTTGTTTGTGTCGTTTTTTCTTGTTTCCTTGTATCCTTCATGTATTATTTTGTTTTGATCGAATAGTAATGAGATCAACCTTATGGTAGCTCACTTCATGCTTGTCATTTGATTTTCCTCTGTGAAATAGACAATGTGGTTCCGAGACGCCCACACAGTGGGAACTTCATGCACATGCATTGCTGTCCTTTTTCTGTTCTTCTTTTAAATATATAAACCAGTGCTTCTTGATCTTGTGTTTAAGGTTTGGTTTATTGATAGATATTGAACTATGTAAAGCATCTAAAGAAATTCTTCATTTTTTGTTTTGATTCCCTGAGACCATTTCTGACTTAAGATTCTCTTCCTGTCTCCAGATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTTGTCAATCTTCCGATTTCAAGACACTTCCATGTTTTGATGCCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCAAAATGAT</genome_strand>
        <mrna_strand>GGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTTGTCAATCTTCCGATTTCAAGACACTTCCATGTTTTGATGCCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCCAAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E232210" ref_strand="-" ref_description="SGN-E232210 [cLEL-5-B10]">
      <seq>aaatcccaaagttaagtgctgaggcgtcgtgggactttgaaatgtgattctgtttcttctgcaataattcggatgtaactacttctggcagcccttcataattgggtttcacctaatgttttctagctcaatttgttgattcacaagtgagctgttcgttttgctttgtaatcggcttatggttaccaacatgagtattgatccaaagttgtttcccgtcaatcttgcgatttcaagacacttccatgttggcatggcctgactttacctgaattaatgatttaaggctccatcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="25055" stop="24158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24755" g_stop="24454" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="303" polyA_stop="314"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E232210" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232210" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24755" e_stop="24454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTTGTCAATCTTCCGATTTCAAGACACTTCCATGTTTTGATGCCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCAAAATGAT</genome_strand>
        <mrna_strand>AAATCCCAAAGTTAAGTGCTGAGGCGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCAGCCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGCTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTCCCGTCAATCTTGCGATTTCAAGACACTTCCATGTTGGCATGGCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E731449" ref_strand="+" ref_description="SGN-E731449 [LA27AF08]">
      <seq>ctagagaatcgaaaaaaatcgaatacagtccatttttcactcgacgacgatgaaggcttcattcaaagcgcgatatgagcccgacaaagccgccgccgccgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattagctctggccgttgagaaacatggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgttggctaatcacgtcatgggctcgggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatacagcaaagaatgcgtgggacttcatggtatcacgtaaagtttatggggatgatgtgtttaaggctacttatcagacaacaagcaagaatttggggctcgaatggtccaggagttctaagttaaatggatcatttaagatttgtgcatctctctgtttgcttgaggaacgcaaaatcccaaagttaagtgctgagacgtcgtgggactttgaaatgtgattctgtttcttctgcaataattcggatgtaactacttctggctacccttcataattgggtttcacctaatgttttctagctcaatttgttgattcacaagtgagctgttcgttttgctttgtataatcggtttatggttaccaacatgagtattgatccaaagttgctttttgtcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28349" stop="24232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28049" g_stop="27803" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26598" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="607" r_length="360" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26597" i_stop="24790" i_length="1808">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24789" g_stop="24532" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="867" r_length="260" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E731449" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28049" e_stop="27803"/>
          <exon e_start="26957" e_stop="26598"/>
          <exon e_start="24789" e_stop="24532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAGGTATAACTTTCAGGCTTTCCATCCATATTTTTCGTTGGCAATTTCCATTGCAATTGAATTACAAAGCTACTATTCAATAGTTTGCACTGAAATTTCAATTGGCTTGCTTATGTTTTTTGGGGCTTATTTCTGTTAGCTCTGTTTTTTTCTTAAAGCATTTGTGAATTTGTTGGCTCACTAGCTTGTTGATCTCATATTCCAACAAAAGTACTCGTATGGTGACACTGCTTTTAGAAGTTACTTGTTACTTACCAGAAAGTCGTCTTCTGGTGAACATTCCAGAATGCGTTGGAGGTGTACATTCTACTTCACTTGTATTTGCACTGGTCATGTACCAAAATTCTTCCTAAACGCCTGTTGGCCGTGTCATTGCAGACCTTTTGTAAACCACGGATGGAATAACCTGTAACTATATGATCCTTTTTTTAAAACATTAAGTGGTCGGAATGTAAATACCTCGGGATTTATCGAAGGTTAATGATGAAGGGATCGTAGTGCACTTGTATAAAGTCTCTGCGAGGTTTATTGATTTTGCTTGTTTCTTATCATTTCTGCTCAGTTATTAAACACACGTGTTGATGTCATTTTGCATTGTTCATATTGTGAGTCTGCATTCTCTGTCTAGTCTGAGAAGGGCCTACCCTCCCTGATGTCACAAGTTGATCAATTTCTTGTCTGGATGAAGGCTGCATGTTGAAAAATCTAAAAAATGGAAGTTCATTTGGTGGTTTTAATAATATAAATGTTCACATGTCATATTGATTCATAGACTCATTTGCTCGACTTTTCTGATTTTGATGTGCATCAATAAGCGTCCACAAAAGGATCTTTCACCCTGATAAGTGCAAGCGACCATTAAAGGTTATTCTACATTGGTATTGGTTCCCTGATTGTCATTTGATAGGGTCATATGATAGATCATGAACTTGGATACATATCTGGATTTTTTGCAGTTATGCCATTGCTTTTGTGGGAATTCAGCTTAGATCCATTATGTTGCCATAAATGTGTGCCAGTTTCAAAATGGCCTTCAATTGTTAATAGTGAATAAGACTGTTTTCATTAATGTTCACCTTCAAGTGATCTATATGCCATCAGAATGTGCAAAGAAATGCACAAATTATAACATCTATTATAGCCATGATATTTTATCAGCATCACTATTGTTATACATTCTGTGTGAAAATCTTTATCGAATTATTTGATAGTTTAACCATAATGACTTGTTTTTAAGCTTCTCGTTTTTACCCGTGAACCTCCTAATTGAATGTTCCCTGGTTTCTGATGATGTTTAAAATGAACACGAGTCATTTCTGCTAGGTTGTATCCTTATTCTGTAAATCAAAAAATTCACTCACTTCTATTGGATAATTCAGCGTAAAAAACTGATCAGCTGTTGTAGAATGAACTTCATAAGTGGACAGTTTCTTATTTTCATCTTTAAATTTTGAATTTGTTTGTGTCGTTTTTTCTTGTTTCCTTGTATCCTTCATGTATTATTTTGTTTTGATCGAATAGTAATGAGATCAACCTTATGGTAGCTCACTTCATGCTTGTCATTTGATTTTCCTCTGTGAAATAGACAATGTGGTTCCGAGACGCCCACACAGTGGGAACTTCATGCACATGCATTGCTGTCCTTTTTCTGTTCTTCTTTTAAATATATAAACCAGTGCTTCTTGATCTTGTGTTTAAGGTTTGGTTTATTGATAGATATTGAACTATGTAAAGCATCTAAAGAAATTCTTCATTTTTTGTTTTGATTCCCTGAGACCATTTCTGACTTAAGATTCTCTTCCTGTCTCCAGATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTG--TAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTTGTCAATC</genome_strand>
        <mrna_strand>CTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGACGACGATGAAGGCTTCATTCAAAGCGCGATATGAGCCCGACAAAGCCGCCGCCGCCGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACATGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTTGGCTAATCACGTCATGGGCTCGGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGATGTGTTTAAGGCTACTTATCAGACAACAAGCAAGAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTATAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGCTTTTTGTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E257406" ref_strand="-" ref_description="SGN-E257406 [cLEG-45-I24]">
      <seq>attaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcatgtcatgggctcaggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatacagcaaagaatgcgtgggacttcatggtatcacgtaaagtttatggggatgacgtgtttaaggctacttatcagacaacaagcaaaaatttggggctcgaatggtccaggagttctaagttaaatggatcatttaagatttgtgcatctctctgtttgcttgaggaacgcaaaatcccaaagttaagtgctgagacgtcgtgggactttgaaatgtgattctgtttcttctgcaataattcggatgtaactacttctggctacccttcataattgggtttcacctaatgttttctagctcaatttgttgattcacaagtgagctgttcgttttgctttgtaatcggtttatggttaccaacatgagtattgatccaaagtttttttttcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="27254" stop="24234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26954" g_stop="26598" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26597" i_stop="24790" i_length="1808">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24789" g_stop="24539" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="608" r_length="251" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="635"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E257406" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257406" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26954" e_stop="26598"/>
          <exon e_start="24789" e_stop="24539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAGGTATAACTTTCAGGCTTTCCATCCATATTTTTCGTTGGCAATTTCCATTGCAATTGAATTACAAAGCTACTATTCAATAGTTTGCACTGAAATTTCAATTGGCTTGCTTATGTTTTTTGGGGCTTATTTCTGTTAGCTCTGTTTTTTTCTTAAAGCATTTGTGAATTTGTTGGCTCACTAGCTTGTTGATCTCATATTCCAACAAAAGTACTCGTATGGTGACACTGCTTTTAGAAGTTACTTGTTACTTACCAGAAAGTCGTCTTCTGGTGAACATTCCAGAATGCGTTGGAGGTGTACATTCTACTTCACTTGTATTTGCACTGGTCATGTACCAAAATTCTTCCTAAACGCCTGTTGGCCGTGTCATTGCAGACCTTTTGTAAACCACGGATGGAATAACCTGTAACTATATGATCCTTTTTTTAAAACATTAAGTGGTCGGAATGTAAATACCTCGGGATTTATCGAAGGTTAATGATGAAGGGATCGTAGTGCACTTGTATAAAGTCTCTGCGAGGTTTATTGATTTTGCTTGTTTCTTATCATTTCTGCTCAGTTATTAAACACACGTGTTGATGTCATTTTGCATTGTTCATATTGTGAGTCTGCATTCTCTGTCTAGTCTGAGAAGGGCCTACCCTCCCTGATGTCACAAGTTGATCAATTTCTTGTCTGGATGAAGGCTGCATGTTGAAAAATCTAAAAAATGGAAGTTCATTTGGTGGTTTTAATAATATAAATGTTCACATGTCATATTGATTCATAGACTCATTTGCTCGACTTTTCTGATTTTGATGTGCATCAATAAGCGTCCACAAAAGGATCTTTCACCCTGATAAGTGCAAGCGACCATTAAAGGTTATTCTACATTGGTATTGGTTCCCTGATTGTCATTTGATAGGGTCATATGATAGATCATGAACTTGGATACATATCTGGATTTTTTGCAGTTATGCCATTGCTTTTGTGGGAATTCAGCTTAGATCCATTATGTTGCCATAAATGTGTGCCAGTTTCAAAATGGCCTTCAATTGTTAATAGTGAATAAGACTGTTTTCATTAATGTTCACCTTCAAGTGATCTATATGCCATCAGAATGTGCAAAGAAATGCACAAATTATAACATCTATTATAGCCATGATATTTTATCAGCATCACTATTGTTATACATTCTGTGTGAAAATCTTTATCGAATTATTTGATAGTTTAACCATAATGACTTGTTTTTAAGCTTCTCGTTTTTACCCGTGAACCTCCTAATTGAATGTTCCCTGGTTTCTGATGATGTTTAAAATGAACACGAGTCATTTCTGCTAGGTTGTATCCTTATTCTGTAAATCAAAAAATTCACTCACTTCTATTGGATAATTCAGCGTAAAAAACTGATCAGCTGTTGTAGAATGAACTTCATAAGTGGACAGTTTCTTATTTTCATCTTTAAATTTTGAATTTGTTTGTGTCGTTTTTTCTTGTTTCCTTGTATCCTTCATGTATTATTTTGTTTTGATCGAATAGTAATGAGATCAACCTTATGGTAGCTCACTTCATGCTTGTCATTTGATTTTCCTCTGTGAAATAGACAATGTGGTTCCGAGACGCCCACACAGTGGGAACTTCATGCACATGCATTGCTGTCCTTTTTCTGTTCTTCTTTTAAATATATAAACCAGTGCTTCTTGATCTTGTGTTTAAGGTTTGGTTTATTGATAGATATTGAACTATGTAAAGCATCTAAAGAAATTCTTCATTTTTTGTTTTGATTCCCTGAGACCATTTCTGACTTAAGATTCTCTTCCTGTCTCCAGATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTT</genome_strand>
        <mrna_strand>ATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCATGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E553595" ref_strand="+" ref_description="SGN-E553595 [cTSC-1-J4]">
      <seq>ggatccaccgggcggcatgctcaatctcctcctcgttatcccgctagctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattagctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcacgtcatgggctcaagaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatacagcaaagaatgcgtgggacttcatggtatcacgtaaagtttatggggatgacgtgtttaaggctacttatcagacaacaagcaaaaatttggggctcgaatggtccaggagttctaagttaaatggatcatttaagatttgtgcatctctctgtttgcttgaggaacgcataatcccaaagttaagtgctgagacgtcgtgggactttgaaatgtgattctgtttcttctgcaataattcggatgtaactacttctggctacccttcataattgggtttcacctaatgttttctagctcaatttgttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28378" stop="24315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28078" g_stop="27803" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="294" r_length="275" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26598" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="654" r_length="360" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26597" i_stop="24790" i_length="1808">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24789" g_stop="24615" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="829" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E553595" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28078" e_stop="27803"/>
          <exon e_start="26957" e_stop="26598"/>
          <exon e_start="24789" e_stop="24615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAGGTATAACTTTCAGGCTTTCCATCCATATTTTTCGTTGGCAATTTCCATTGCAATTGAATTACAAAGCTACTATTCAATAGTTTGCACTGAAATTTCAATTGGCTTGCTTATGTTTTTTGGGGCTTATTTCTGTTAGCTCTGTTTTTTTCTTAAAGCATTTGTGAATTTGTTGGCTCACTAGCTTGTTGATCTCATATTCCAACAAAAGTACTCGTATGGTGACACTGCTTTTAGAAGTTACTTGTTACTTACCAGAAAGTCGTCTTCTGGTGAACATTCCAGAATGCGTTGGAGGTGTACATTCTACTTCACTTGTATTTGCACTGGTCATGTACCAAAATTCTTCCTAAACGCCTGTTGGCCGTGTCATTGCAGACCTTTTGTAAACCACGGATGGAATAACCTGTAACTATATGATCCTTTTTTTAAAACATTAAGTGGTCGGAATGTAAATACCTCGGGATTTATCGAAGGTTAATGATGAAGGGATCGTAGTGCACTTGTATAAAGTCTCTGCGAGGTTTATTGATTTTGCTTGTTTCTTATCATTTCTGCTCAGTTATTAAACACACGTGTTGATGTCATTTTGCATTGTTCATATTGTGAGTCTGCATTCTCTGTCTAGTCTGAGAAGGGCCTACCCTCCCTGATGTCACAAGTTGATCAATTTCTTGTCTGGATGAAGGCTGCATGTTGAAAAATCTAAAAAATGGAAGTTCATTTGGTGGTTTTAATAATATAAATGTTCACATGTCATATTGATTCATAGACTCATTTGCTCGACTTTTCTGATTTTGATGTGCATCAATAAGCGTCCACAAAAGGATCTTTCACCCTGATAAGTGCAAGCGACCATTAAAGGTTATTCTACATTGGTATTGGTTCCCTGATTGTCATTTGATAGGGTCATATGATAGATCATGAACTTGGATACATATCTGGATTTTTTGCAGTTATGCCATTGCTTTTGTGGGAATTCAGCTTAGATCCATTATGTTGCCATAAATGTGTGCCAGTTTCAAAATGGCCTTCAATTGTTAATAGTGAATAAGACTGTTTTCATTAATGTTCACCTTCAAGTGATCTATATGCCATCAGAATGTGCAAAGAAATGCACAAATTATAACATCTATTATAGCCATGATATTTTATCAGCATCACTATTGTTATACATTCTGTGTGAAAATCTTTATCGAATTATTTGATAGTTTAACCATAATGACTTGTTTTTAAGCTTCTCGTTTTTACCCGTGAACCTCCTAATTGAATGTTCCCTGGTTTCTGATGATGTTTAAAATGAACACGAGTCATTTCTGCTAGGTTGTATCCTTATTCTGTAAATCAAAAAATTCACTCACTTCTATTGGATAATTCAGCGTAAAAAACTGATCAGCTGTTGTAGAATGAACTTCATAAGTGGACAGTTTCTTATTTTCATCTTTAAATTTTGAATTTGTTTGTGTCGTTTTTTCTTGTTTCCTTGTATCCTTCATGTATTATTTTGTTTTGATCGAATAGTAATGAGATCAACCTTATGGTAGCTCACTTCATGCTTGTCATTTGATTTTCCTCTGTGAAATAGACAATGTGGTTCCGAGACGCCCACACAGTGGGAACTTCATGCACATGCATTGCTGTCCTTTTTCTGTTCTTCTTTTAAATATATAAACCAGTGCTTCTTGATCTTGTGTTTAAGGTTTGGTTTATTGATAGATATTGAACTATGTAAAGCATCTAAAGAAATTCTTCATTTTTTGTTTTGATTCCCTGAGACCATTTCTGACTTAAGATTCTCTTCCTGTCTCCAGATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATT</genome_strand>
        <mrna_strand>CTC-AATCTCCTCCTCGTTATCCCGCTAGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAAGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCATAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E333783" ref_strand="+" ref_description="SGN-E333783 [cTOD-22-L17]">
      <seq>taattcctaaacctcaaatctcctcctccttatcccgctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattatctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcatgtcatgggctcaggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatacagcaaagaatgcgtgggacttcatggtatcacgtaaagtttatggggatgacgtgtttaaggctacttatcagacaacaagcaaaaatttggggctcgaatggtccaggagttctaagttaaatggatcatttaagatttgtgcatctctctgtttgcttgaggaacgcaaaatcccaaagttaagtgctgagacgtcgtgggactttgaaatgtgattctgtttcttctgcaataattcggatgtaactacttctggctaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28390" stop="24361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28090" g_stop="27803" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26598" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="648" r_length="360" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26597" i_stop="24790" i_length="1808">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24789" g_stop="24661" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="777" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E333783" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28090" e_stop="27803"/>
          <exon e_start="26957" e_stop="26598"/>
          <exon e_start="24789" e_stop="24661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAGGTATAACTTTCAGGCTTTCCATCCATATTTTTCGTTGGCAATTTCCATTGCAATTGAATTACAAAGCTACTATTCAATAGTTTGCACTGAAATTTCAATTGGCTTGCTTATGTTTTTTGGGGCTTATTTCTGTTAGCTCTGTTTTTTTCTTAAAGCATTTGTGAATTTGTTGGCTCACTAGCTTGTTGATCTCATATTCCAACAAAAGTACTCGTATGGTGACACTGCTTTTAGAAGTTACTTGTTACTTACCAGAAAGTCGTCTTCTGGTGAACATTCCAGAATGCGTTGGAGGTGTACATTCTACTTCACTTGTATTTGCACTGGTCATGTACCAAAATTCTTCCTAAACGCCTGTTGGCCGTGTCATTGCAGACCTTTTGTAAACCACGGATGGAATAACCTGTAACTATATGATCCTTTTTTTAAAACATTAAGTGGTCGGAATGTAAATACCTCGGGATTTATCGAAGGTTAATGATGAAGGGATCGTAGTGCACTTGTATAAAGTCTCTGCGAGGTTTATTGATTTTGCTTGTTTCTTATCATTTCTGCTCAGTTATTAAACACACGTGTTGATGTCATTTTGCATTGTTCATATTGTGAGTCTGCATTCTCTGTCTAGTCTGAGAAGGGCCTACCCTCCCTGATGTCACAAGTTGATCAATTTCTTGTCTGGATGAAGGCTGCATGTTGAAAAATCTAAAAAATGGAAGTTCATTTGGTGGTTTTAATAATATAAATGTTCACATGTCATATTGATTCATAGACTCATTTGCTCGACTTTTCTGATTTTGATGTGCATCAATAAGCGTCCACAAAAGGATCTTTCACCCTGATAAGTGCAAGCGACCATTAAAGGTTATTCTACATTGGTATTGGTTCCCTGATTGTCATTTGATAGGGTCATATGATAGATCATGAACTTGGATACATATCTGGATTTTTTGCAGTTATGCCATTGCTTTTGTGGGAATTCAGCTTAGATCCATTATGTTGCCATAAATGTGTGCCAGTTTCAAAATGGCCTTCAATTGTTAATAGTGAATAAGACTGTTTTCATTAATGTTCACCTTCAAGTGATCTATATGCCATCAGAATGTGCAAAGAAATGCACAAATTATAACATCTATTATAGCCATGATATTTTATCAGCATCACTATTGTTATACATTCTGTGTGAAAATCTTTATCGAATTATTTGATAGTTTAACCATAATGACTTGTTTTTAAGCTTCTCGTTTTTACCCGTGAACCTCCTAATTGAATGTTCCCTGGTTTCTGATGATGTTTAAAATGAACACGAGTCATTTCTGCTAGGTTGTATCCTTATTCTGTAAATCAAAAAATTCACTCACTTCTATTGGATAATTCAGCGTAAAAAACTGATCAGCTGTTGTAGAATGAACTTCATAAGTGGACAGTTTCTTATTTTCATCTTTAAATTTTGAATTTGTTTGTGTCGTTTTTTCTTGTTTCCTTGTATCCTTCATGTATTATTTTGTTTTGATCGAATAGTAATGAGATCAACCTTATGGTAGCTCACTTCATGCTTGTCATTTGATTTTCCTCTGTGAAATAGACAATGTGGTTCCGAGACGCCCACACAGTGGGAACTTCATGCACATGCATTGCTGTCCTTTTTCTGTTCTTCTTTTAAATATATAAACCAGTGCTTCTTGATCTTGTGTTTAAGGTTTGGTTTATTGATAGATATTGAACTATGTAAAGCATCTAAAGAAATTCTTCATTTTTTGTTTTGATTCCCTGAGACCATTTCTGACTTAAGATTCTCTTCCTGTCTCCAGATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCT</genome_strand>
        <mrna_strand>TAATTCCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTATCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCATGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E321859" ref_strand="+" ref_description="SGN-E321859 [cTOB-29-G21]">
      <seq>aatttcctaattcctaaacctcaaatctcctcctccttatccctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattatctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcatgtcatgggctcaggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatacagcaaagaatgcgtgggacttcatggtatcacgtaaagtttatggggatgacgtgtttaaggctacttatcagacaacaagcaaaaatttggggctcgaatggtccaggagttctaagttaaatggatcatttaagatttgtgcatctctctgtttgcttgaggaacgcaaaatcccaaagttaagtgctgagacgtcgtgggactttgaaatgtgattctgtttcttctgcaataattcggatgtaactacttctggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28397" stop="24365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28097" g_stop="27803" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26598" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="653" r_length="360" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26597" i_stop="24790" i_length="1808">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24789" g_stop="24665" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="778" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E321859" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28097" e_stop="27803"/>
          <exon e_start="26957" e_stop="26598"/>
          <exon e_start="24789" e_stop="24665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCCTAATTCCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAGGTATAACTTTCAGGCTTTCCATCCATATTTTTCGTTGGCAATTTCCATTGCAATTGAATTACAAAGCTACTATTCAATAGTTTGCACTGAAATTTCAATTGGCTTGCTTATGTTTTTTGGGGCTTATTTCTGTTAGCTCTGTTTTTTTCTTAAAGCATTTGTGAATTTGTTGGCTCACTAGCTTGTTGATCTCATATTCCAACAAAAGTACTCGTATGGTGACACTGCTTTTAGAAGTTACTTGTTACTTACCAGAAAGTCGTCTTCTGGTGAACATTCCAGAATGCGTTGGAGGTGTACATTCTACTTCACTTGTATTTGCACTGGTCATGTACCAAAATTCTTCCTAAACGCCTGTTGGCCGTGTCATTGCAGACCTTTTGTAAACCACGGATGGAATAACCTGTAACTATATGATCCTTTTTTTAAAACATTAAGTGGTCGGAATGTAAATACCTCGGGATTTATCGAAGGTTAATGATGAAGGGATCGTAGTGCACTTGTATAAAGTCTCTGCGAGGTTTATTGATTTTGCTTGTTTCTTATCATTTCTGCTCAGTTATTAAACACACGTGTTGATGTCATTTTGCATTGTTCATATTGTGAGTCTGCATTCTCTGTCTAGTCTGAGAAGGGCCTACCCTCCCTGATGTCACAAGTTGATCAATTTCTTGTCTGGATGAAGGCTGCATGTTGAAAAATCTAAAAAATGGAAGTTCATTTGGTGGTTTTAATAATATAAATGTTCACATGTCATATTGATTCATAGACTCATTTGCTCGACTTTTCTGATTTTGATGTGCATCAATAAGCGTCCACAAAAGGATCTTTCACCCTGATAAGTGCAAGCGACCATTAAAGGTTATTCTACATTGGTATTGGTTCCCTGATTGTCATTTGATAGGGTCATATGATAGATCATGAACTTGGATACATATCTGGATTTTTTGCAGTTATGCCATTGCTTTTGTGGGAATTCAGCTTAGATCCATTATGTTGCCATAAATGTGTGCCAGTTTCAAAATGGCCTTCAATTGTTAATAGTGAATAAGACTGTTTTCATTAATGTTCACCTTCAAGTGATCTATATGCCATCAGAATGTGCAAAGAAATGCACAAATTATAACATCTATTATAGCCATGATATTTTATCAGCATCACTATTGTTATACATTCTGTGTGAAAATCTTTATCGAATTATTTGATAGTTTAACCATAATGACTTGTTTTTAAGCTTCTCGTTTTTACCCGTGAACCTCCTAATTGAATGTTCCCTGGTTTCTGATGATGTTTAAAATGAACACGAGTCATTTCTGCTAGGTTGTATCCTTATTCTGTAAATCAAAAAATTCACTCACTTCTATTGGATAATTCAGCGTAAAAAACTGATCAGCTGTTGTAGAATGAACTTCATAAGTGGACAGTTTCTTATTTTCATCTTTAAATTTTGAATTTGTTTGTGTCGTTTTTTCTTGTTTCCTTGTATCCTTCATGTATTATTTTGTTTTGATCGAATAGTAATGAGATCAACCTTATGGTAGCTCACTTCATGCTTGTCATTTGATTTTCCTCTGTGAAATAGACAATGTGGTTCCGAGACGCCCACACAGTGGGAACTTCATGCACATGCATTGCTGTCCTTTTTCTGTTCTTCTTTTAAATATATAAACCAGTGCTTCTTGATCTTGTGTTTAAGGTTTGGTTTATTGATAGATATTGAACTATGTAAAGCATCTAAAGAAATTCTTCATTTTTTGTTTTGATTCCCTGAGACCATTTCTGACTTAAGATTCTCTTCCTGTCTCCAGATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTA</genome_strand>
        <mrna_strand>AATTTCCTAATTCCTAAACCTCAAATCTCCTCCTCCTTAT-CC-CTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTATCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCATGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E276715" ref_strand="+" ref_description="SGN-E276715 [cLEN-14-J19]">
      <seq>tctcctcctccttatcccgctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattatctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcatgtcatgggctcaggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatacagcaaagaatgcgtgggacttcatggtatcacgtaaagtttatggggatgacgtgtttaaggctacttatcagacaacaagcaaaaatttggggctcgaatggtccaggagttctaagttaaatggatcatttaagatttgtgcatctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28372" stop="26294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28072" g_stop="27803" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26598" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="630" r_length="360" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E276715" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28072" e_stop="27803"/>
          <exon e_start="26957" e_stop="26598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAG</genome_strand>
        <mrna_strand>TCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTATCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCATGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E231843" ref_strand="+" ref_description="SGN-E231843 [cLED-7-E10]">
      <seq>taaacctcaaatctcctcctccttatcccgctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattatctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcatgtcatgggctcaggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatacagcaaagaatgcgtgggacttcatggtatcacgtaaagtttatggggatgacgtgtttaaggctacttatcagacaacaagcaaaaatttggggctcgaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28383" stop="26330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28083" g_stop="27803" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26630" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="609" r_length="328" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E231843" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28083" e_stop="27803"/>
          <exon e_start="26957" e_stop="26630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGT</genome_strand>
        <mrna_strand>TAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTATCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCATGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E344210" ref_strand="+" ref_description="SGN-E344210 [cTOF-16-P9]">
      <seq>cttatcccgctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattatctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcatgtcatgggctcaggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatacagcaaagaatgcgtgggacttcatggtatcacgtaaagtttatggggatgacgtgtttaaggctacttatcagacaacaagcaaaaatttggggctcgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28362" stop="26332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28062" g_stop="27803" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26632" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="586" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E344210" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28062" e_stop="27803"/>
          <exon e_start="26957" e_stop="26632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATG</genome_strand>
        <mrna_strand>CTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTATCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCATGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E295880" ref_strand="+" ref_description="SGN-E295880 [cLET-27-K21]">
      <seq>aaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattagctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcacgtcatgggctcaggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatacagcaaagaatgcgtgggacttcatggtatcacgtaaagtttatggggatgacgtgtttaaggctacttatcagacaacaagcaaaaatttggggctcgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28334" stop="26333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28034" g_stop="27803" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26633" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="557" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E295880" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28034" e_stop="27803"/>
          <exon e_start="26957" e_stop="26633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAAT</genome_strand>
        <mrna_strand>AAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E278197" ref_strand="+" ref_description="SGN-E278197 [cLER-9-L13]">
      <seq>gctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattagctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcacgtcatgggctcaggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatacagcanagaatgcgtgggacttcatggtatcacgtaaagtttatggngatgacgtgtttaaggctacttatcagacaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28354" stop="26354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28054" g_stop="27803" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26654" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="556" r_length="304" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E278197" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28054" e_stop="27803"/>
          <exon e_start="26957" e_stop="26654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAA</genome_strand>
        <mrna_strand>GCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCANAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGNGATGACGTGTTTAAGGCTACTTATCAGACAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E274821" ref_strand="+" ref_description="SGN-E274821 [cLEN-13-J19]">
      <seq>tctcctcctccttatcccgctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattatctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcatgtcatgggctcaggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatacagcaaagaatgcgtgggacttcatggtatcacgtaaagtttatggggatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28372" stop="26382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28072" g_stop="27803" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26682" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="546" r_length="276" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E274821" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28072" e_stop="27803"/>
          <exon e_start="26957" e_stop="26682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGAC</genome_strand>
        <mrna_strand>TCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTATCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCATGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E292871" ref_strand="+" ref_description="SGN-E292871 [cLET-11-B19]">
      <seq>aaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattagctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcacgtcatgggctcaggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatacagcaaagaatgcgtgggacttcatggtatcacgtaaagtttatggggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28334" stop="26383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28034" g_stop="27803" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26683" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="507" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E292871" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28034" e_stop="27803"/>
          <exon e_start="26957" e_stop="26683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGA</genome_strand>
        <mrna_strand>AAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E231378" ref_strand="+" ref_description="SGN-E231378 [cLED-10-H23]">
      <seq>taaacctcaaatctcctcctccttatcccgctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattatctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcatgtcatgggctcaggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatacagcaaaggatgcgtgggacttcatggtatcacgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28383" stop="26399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28083" g_stop="27803" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26699" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="540" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E231378" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28083" e_stop="27803"/>
          <exon e_start="26957" e_stop="26699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTA</genome_strand>
        <mrna_strand>TAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTATCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCATGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGGATGCGTGGGACTTCATGGTATCACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E265920" ref_strand="+" ref_description="SGN-E265920 [cLEI-6-C3]">
      <seq>ccggccccaagtgttagagccatccatcagcgatttcctaattcctaaacctcaaatctcctcctccttatcccgctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctacatgaccgatgctactgttgtcaaaggtcccagcttaaacggattatctctggccgttgagaaacctggattgttcatcgccgactacaacgtcccgaagaaggacattaggtttcaattcatgaactcaatcaaggctctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcatgtcatgggctcacgaagttgtcaattacagtacacatatgtgcacggaggaatcactactttcgagcccatctatgatacagcaaacaatgcgtgggacttcatggtatcacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28428" stop="26400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28128" g_stop="27803" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26700" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="584" r_length="258" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E265920" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28128" e_stop="27803"/>
          <exon e_start="26957" e_stop="26700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCCCAAGTGTTAGAGCCATCCATCAGCAATTTCCTAATTCCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGT</genome_strand>
        <mrna_strand>CCGGCCCCAAGTGTTAGAGCCATCCATCAGCGATTTCCTAATTCCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTACATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTATCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGCCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTCATGAACTCAATCAAGGCTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCATGTCATGGGCTCACGAAGTTGTCAATTACAGTACACATATGTGCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAACAATGCGTGGGACTTCATGGTATCACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E257405" ref_strand="+" ref_description="SGN-E257405 [cLEG-45-I24]">
      <seq>aaagttactttattgtatttatgaaattttccccttacgtgtcttatccattcagttgaacaaattagagtgccggccccaagtgttagagccatccatcagcaatttcctaattcctaaacctcaaatctcctcctccttatcccgctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattatctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcatgtcatgggctcaggaaagttggtaattaagtacacatatgtccancggaggatcactactttcgagcccatctatgatacagcaaagaatgcgtgggacttcatggtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28509" stop="26404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28209" g_stop="27803" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26704" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="652" r_length="254" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E257405" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28209" e_stop="27803"/>
          <exon e_start="26957" e_stop="26704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTACTTTATTGTATTTATGAAATTTTCCCCTTACGGGGCATGTTTGTCTTATCCATTCAGTTGAACAAATTAGAATGCCGGCCCCAAGTGTTAGAGCCATCCATCAGCAATTTCCTAATTCCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGG-AAGTTGTAAATTAAAGTACACATATGTCCA-CGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATC</genome_strand>
        <mrna_strand>AAAGTTACTTTATTGTATTTATGAAATTTTCCCCTTA-----C--G--TGTCTTATCCATTCAGTTGAACAAATTAGAGTGCCGGCCCCAAGTGTTAGAGCCATCCATCAGCAATTTCCTAATTCCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTATCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCATGTCATGGGCTCAGGAAAGTTGGTAATT-AAGTACACATATGTCCANCGGAGG-ATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E256138" ref_strand="+" ref_description="SGN-E256138 [cLEG-37-N20]">
      <seq>taaacctcaaatctcctcctccttatcccgctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattatctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcatgtcatgggctcaggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28383" stop="26431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28083" g_stop="27803" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26731" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="508" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E256138" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28083" e_stop="27803"/>
          <exon e_start="26957" e_stop="26731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGC</genome_strand>
        <mrna_strand>TAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTATCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCATGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E333382" ref_strand="+" ref_description="SGN-E333382 [cTOD-20-K4]">
      <seq>taattcctaaacctcaaatctcctcctccttatcccgctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattatctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcatgtcatgggctcaggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28390" stop="26434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28090" g_stop="27803" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26734" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="512" r_length="224" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E333382" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28090" e_stop="27803"/>
          <exon e_start="26957" e_stop="26734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATAC</genome_strand>
        <mrna_strand>TAATTCCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTATCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCATGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E278015" ref_strand="+" ref_description="SGN-E278015 [cLER-4-J21]">
      <seq>tccttatcccgctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattagctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcacgtcatgggctcaggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28364" stop="26435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28064" g_stop="27803" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26735" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="485" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E278015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28064" e_stop="27803"/>
          <exon e_start="26957" e_stop="26735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATA</genome_strand>
        <mrna_strand>TCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E237626" ref_strand="+" ref_description="SGN-E237626 [cLED-19-I23]">
      <seq>taaacctcaaatctcctcctccttatcccgctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattatctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28383" stop="26558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28083" g_stop="27803" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="381" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E237626" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28083" e_stop="27803"/>
          <exon e_start="26957" e_stop="26858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATG</genome_strand>
        <mrna_strand>TAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTATCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E239619" ref_strand="+" ref_description="SGN-E239619 [cLED-23-F10]">
      <seq>taaacctcaaatctcctcctccttatcccgctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattatctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28383" stop="26559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28083" g_stop="27803" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26859" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="380" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E239619" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28083" e_stop="27803"/>
          <exon e_start="26957" e_stop="26859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGAT</genome_strand>
        <mrna_strand>TAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTATCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E200013" ref_strand="+" ref_description="SGN-E200013 [cLEB-9-I5]">
      <seq>gcacgagctcaaatctcctcctccttatcccgctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattatctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggtctggactcgattctgcatatgtcagttttactaatcaccgtcgatatagtgaaaaatgttatagttaaattgaatgtaatatatacacatgatttacatagactattctaactagttcggaattgagatttagttggttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28380" stop="27360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28085" g_stop="27661" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="448"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E200013" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28085" e_stop="27661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTA</genome_strand>
        <mrna_strand>GCACGAGCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTATCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E321739" ref_strand="+" ref_description="SGN-E321739 [cTOB-25-G4]">
      <seq>accaaagaaacacctctctggaaaaaaataaaaaaagtgacagagaaatatccatttctccccaaatttctctcaaaatcatttgctccgtttaatcctctctcaaaggaggaaaaaaaggaaacaccaattttttagttctttttcccaacaatcttcctctttctgtttatataattttttttgaagaatagtgttgtattttttacatcatgagaaaattgagccctaatttggacaaagaagatggattggatacagttttggaggttcctcttccagaagaaatgtttagcaaaacggatggcagcagtgcagcaatcaggtggaagaagatgctaaatctaatacgagctgataaattgccaaatcgatcgaaggcggtttcttctggaaataatgatcaatttatgttcttgttgaaaattgttggatctgctcttataccttttcaggttcaattggatcatgcaattaacttgcctgttagagatggttgcattaaagcttcttctgcaaaatacatagtacaacaatacctagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="42084" stop="44227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42384" g_stop="42886" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42887" i_stop="43886" i_length="1000">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.352" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43887" g_stop="43927" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="544" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E321739" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42384" e_stop="42886"/>
          <exon e_start="43887" e_stop="43927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAGAAACACCTCTCTGGAAAAAAATAAAAAAAGTGACAGAGAAATATCCATTTCTCCCCAAATTTCTCTCAAAATCATTTGCTCCGTTTAATCCTCTCTCAAAGGAGGAAAAAAAGGAAACACCAATGTTTTAGTTCTTTTTCCCAACAATCTTCCTCTTTCTGTTTATATAATTTTTTTTGAAGAATAGTGTTGTATTTTTTACATCATGAGAAAATTGAGCCCTAATTTGGACAAAGAAGATGGATTGGATACAGTTTTGGAGGTTCCTCTTCCAGAAGAAATGTTTAGCAAAACGGATGGCAGCAGTGCAGCAATCAGGTGGAAGAAGATGCTAAATCTAATACGAGCTGATAAATTGCCAAATCGATCGAAGGCGGTTTCTTCTGGAAATAATGATCAATTTATGTTCTTGTTGAAAATTGTTGGATCTGCTCTTATACCTTTTCAGGTTCAATTGGATCATGCAATTAACTTGCCTGTTAGAGATGGTTGCATTGTGAGTTGCTATGTACATCTCTCCTTCCTGTTTTTTGTTTTTGGATAAAATATAATAATAAATTAATAATAACAAATAATAAGCAAAAAAAAAAAAAAAAAAGAACAGCTCAGAAAAATTCTGTGTTCTATCAAGGTTGGGGGCTGGGGGAAGGGGTGAGAGGTGGGAAGCCTATATGTAAATATTAGTGATTTCACATTTCGAACTCGTGACTCATAAGTTACTAGTATGTTGTGTAGTGTTATTCATTCCACATTATTTCGTTGTTGTTATTGCTTTTATTTCCATGTTCCCTTTTTCAAACTTCTGGGTCTATCTGAAACGGTCTCTATCTAAACCATAGGGGTAAGGTCTGGGTATATTGTACTCTTTGCAGACCACACGTGTGGGATCATATTGGGTATATTGTTGTTATTCATCTATAGGTTACGCTGAGACAATTTTATTATTGCTTCAAAGCTCGCCTTCTTTTGGGATATTTGTATTGGACAAAACAATATTTTCTTAAATGGTTAACTGAATTGACAAAGTTTGAATATTCTTGAACTTGATTCGTGAATAAGAATGCTAATGTACTTTTTTTTAAGCAATCAATCAATCACCTCTGCATCATATTTTATCAAACTAATCAGGTCGATTTTATGAATTCGCTCTCTCTATATTTGGCTCTATTCCGAATGTAGTAGCTGTTTTGGTGGGTAAGGGCATGGCTGCATGAAGGCAAAGGGGTTCAATTGGATCTCTTTTGCCGGAAAATTATATTGTGCAAGTATATATTCTAGGATCTATGTCTGATGTTCTATTGAAGTGTGTTATCATCTCATCTAAAAGCTTAAGCGGTTAGAGATAACACATTTTTATTTACTTAATTATATTGTGAACGTGAAAAACAGAAGATAAATGATGTATCAAATATCACAAGATCTTAACTGATAGATTTTGCTTTAACTTCTCAAACAAAAAACATGCTGAAACCCTTCTCTAATGTTGTGGGCATCAGAAAGCTTCTTCTGCAAAATACATAGTACAACAATACCTAGC</genome_strand>
        <mrna_strand>ACCAAAGAAACACCTCTCTGGAAAAAAATAAAAAAAGTGACAGAGAAATATCCATTTCTCCCCAAATTTCTCTCAAAATCATTTGCTCCGTTTAATCCTCTCTCAAAGGAGGAAAAAAAGGAAACACCAATTTTTTAGTTCTTTTTCCCAACAATCTTCCTCTTTCTGTTTATATAATTTTTTTTGAAGAATAGTGTTGTATTTTTTACATCATGAGAAAATTGAGCCCTAATTTGGACAAAGAAGATGGATTGGATACAGTTTTGGAGGTTCCTCTTCCAGAAGAAATGTTTAGCAAAACGGATGGCAGCAGTGCAGCAATCAGGTGGAAGAAGATGCTAAATCTAATACGAGCTGATAAATTGCCAAATCGATCGAAGGCGGTTTCTTCTGGAAATAATGATCAATTTATGTTCTTGTTGAAAATTGTTGGATCTGCTCTTATACCTTTTCAGGTTCAATTGGATCATGCAATTAACTTGCCTGTTAGAGATGGTTGCATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCTTCTTCTGCAAAATACATAGTACAACAATACCTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E746990" ref_strand="+" ref_description="SGN-E746990 [GI|47104292]">
      <seq>tcatcttcttgattcttcaataaaaaaatcaaaaaatttcttactctcagttttgcttataaagatctaatcttttctgaattgggtgaaagaaaaatcatgagaatataccaagaaatgaaagatgaagaagctcaatcaagaattagtacaaatacagtaacaacagtttcagtagtagcaacaccagcagcagcagcaacatcaactgtaaaaaaagatcaaggatttagtggggtatttggtaaaggtaaatacaaattgtgggtattggcagcaattcttttgctagctttttggtctatgtttactggctcacttactcttagtctcaactggtctacttcaaatctcagccgtttatctcatgcttctgatttcacgatccatgaagatcttgatattctggtgttggaggaaagagagaagatggtaaaacatatgtgggatgtgtacacacagaataacaggatcaggttgcctaagttctggcaagacgctttccaagcagcgtacctagatttgacgagtgattcaccagctacccgagacactgctgtgtcggagattgccaagatgtccctccgctccacttccacttatgaatcaccttccaacaagaaaccagaaccaagagaagcagataaagaaaaaggatcgaaaagtcttcgcactacaaagaaacagaaatgatgatgagggaaatagttgtgttgagaattaagatgcaaggtagatgcaacaaagttgtggttgaactcagttcttcttggtagtcaaagttttttacttgtattttatactactactactagagctttatttagatatatcataagatcaaaatttagtgaaggcaaaggtcttccttttgattgtttccacttaataatatgccattttaaaaacagctggttaattatgttaactaaaatcagttattcttatttggttgatccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="51174" stop="54667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51474" g_stop="51895" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51896" i_stop="52729" i_length="834">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52730" g_stop="52956" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="635" r_length="227" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52957" i_stop="54023" i_length="1067">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54024" g_stop="54359" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="961" r_length="326" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="962" polyA_stop="974"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E746990" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>985</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51474" e_stop="51895"/>
          <exon e_start="52730" e_stop="52956"/>
          <exon e_start="54024" e_stop="54359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCTTGATTCTTCAAAAATAAAAAATCAAAAAAATTCTTACTCTCAGTTTTGCTTATAAAGATCTAATCTTTTCTGAATTGGGTGAAAGAAAAATCATGAGAATATACCAAGAAATGAAAGATGAAGAAGCTCAATCAAGAATTAGTACAAATACAGTAACAACAGTTTCTTCAGTTTCAGCAGTAGCAACACCAGCAGCAGCAGCAGCAACATCAACTGTAAAAAAAGATCAAGGATTTAGTGGGGTTTTTGGTAAAGGTAAATACAAATTGTGGGTATTGGCTGCAATTCTTTTGCTAGCTTTTTGGTCTATGTTTACTGGCTCACTTACTCTTAGTCTCAACTGGTCTACTTCAAATCTCAGCCGTTTATCTCATGCTTCTGATTTCACGATCCATGAAGATCTTGATATTCTGGTAATGTTTCTTGATCCTTTTTGCTTGGTGGTTTAGTTTAGTTAAAGGCTAAATCTTGAGTAATTATGGAAAAAGATTTGATTTTTGGTACATGGGTCAGTTTGCTAAAAGGCAAATCATGAGTAATCATGAAAAAAGATTAGATTTTTGCTACATGGGTCAGTTTGCTAAATGGTAAATGTTAAGTAATTAAGAAAAAAAATTGATTGTTGCTAGATGGGTCATTTTGCTAACAGACAAAATCATAAGTTACTAAGAAAAAGGTTAAATTTTTGCTACATGGGTTAGTTTTCTAAAAGGCAAAATCATAAGTAATTAAGAAAAAGATTTGTTTTGCTACATGGGTCATTTTGCTAAAAGGCAAATCATAAAGAAAAATGATTTTTTTTTTTTGCTACATGGGTTGTTTACTTTAAAGGCAGATAGATTTTTGCTGTATATATTGTTAGTACTAGTATATATAGCAGACTCAGCTTGTTTAGTAATTGAAATTAGGTGATTATTGGTAGTATTAGGAGTACATTTCAGGTCAATCACCTCAAAAAGTTCTTTTCTTTTTTGCTTTCACTCTTTCTAATCTTCTTTGTCTACTTTAAATAGTGGTTTTGTTTTGTGGGTTTCTTGATTTCCTGATGTTTCACCATATCATGTGTAAAAACGTCGAATTGATTTTCTAGATATTAAAGCAAATCCTACATTTTTGCTTGATGTAGTAGTAATACAGTAAAGCTCATTTAAAGTTTGATTTTGAGATTAAGTTGATTGGATCAAGTAGGAGTACATTTTTACACCATTTTGTGTATTAAAATTTTGAAGTTTTCTACTGATTCGTAGGTATTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAGCAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCATACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAGGTAAATTTTTCCAGTGAGACTTGTTTTATTGTATATATATCAATCAACTACGCCTCAGTTCCAAACTAGTCGAAATCAGGCTGTATGAATTCTTGATATACGTTCTGCTCAAAGTTGTGACAGTAATTAGGGAGTTCCTTAATCCTTGTTCTTCTCTTTACTGTGCTTTGTCATATGGGATGAGAATTAGCTTAGCATGCAACTTAATCTTGAGGGGCAACCGTGGTCTAGTGGTAAATGAAATAGATTGAGAACTATGAAGCCTAAGGTTCATATTCCAACGGAAGCAAAACACTAGGTGATCTCTCCATTTCTCTCCAAGCCTCAGTGGATAGAGTTATGTGATGCCGGTGAGGTAGCAGATACCCAATCTGGTCCGGATACCACACCTATTAAAAAAAAAGTAGTCCAAAAGTCAAAACTGAGGAATTCTAACAAAATTTCTTTACTGCTTTTTAGTATATTGGATGATGATTTTTTATGGGGTTCTCTGTCTTGAGGAGTAACTATAAAAGTGTGGAAGGGTAGTTCAAGTTATCCTAAAATAGGTTGAAACTGAATATGCAGAGTATCTACTTCTAACTAGCAACTCTTTACTGTCCTATATCACATGGGGTGGTTATTTTTGTGGGGCATCCTAAAAAAAGTACTTCTCCTAAGTTTTCTTTAAATTCCTAAGAAGATATGAAACTAAATTTACACTAGAATTTGTGTAAGTCTAAGATCATCTCATCTTAAAGTTGAAGAACGTCTTTTTTATAGTGTGTATAACCTAAAAATGCAAAAGGGTAGTTCAAAGTTTTCCTAAAATTCCTAAGATTCGAAAATGAATCTACACTAGCATTTGTTGAACTGTGAGACTATCTCATCAAATACGTCGTTTGATAAAGGATATGATAGTGAGATTCCAACCACTACCTGCTTTGATACCATGTCGAAGTGTATAATCATGTTATTCAAAAGTTTGAACCATTAAAGAGCACACATTCATTTATTTAATTATATTCTCAACAAAGTTTACGTCTAACGAACTATTGTTGAATTTTGTTGGTTATGAATATGAACAGAGAAGCAGAGAAAGAAAAAGGATCTAAAAGTCCGGCGAAGACGATAACTACAAAGAAACAGAAATGATGATGAGGGAAATGGTTGTGTTGAGAATTAAGATGGAAGGTAGATGCAACAAAGTTGTGGTTGAACTCA-TTCTTCTTGGTAGTCAAAGTTCTTTACTTGTA-TTTATACTACTACTACTAGAGCTTTATTTAGATATATCATAAGATCAAAATTTAGTGAAGGCAAAGGTCTTCCTTTTGATTGTTTCCACTTAATAATATGCCATTTCAAAACCAGCTGGTTAATTATGTTGTTAACTAAAATCGGTTATTCTTATTTGGTTGATCCAA</genome_strand>
        <mrna_strand>TCATCTTCTTGATTCTTC-AATA-AAAAAATCAAAAAATTTCTTACTCTCAGTTTTGCTTATAAAGATCTAATCTTTTCTGAATTGGGTGAAAGAAAAATCATGAGAATATACCAAGAAATGAAAGATGAAGAAGCTCAATCAAGAATTAGTACAAATACAGTAACAACAG--T-TTCAG--T----AGTAGCAACA-C--CAGCAGCAGCAGCAACATCAACTGTAAAAAAAGATCAAGGATTTAGTGGGGTATTTGGTAAAGGTAAATACAAATTGTGGGTATTGGCAGCAATTCTTTTGCTAGCTTTTTGGTCTATGTTTACTGGCTCACTTACTCTTAGTCTCAACTGGTCTACTTCAAATCTCAGCCGTTTATCTCATGCTTCTGATTTCACGATCCATGAAGATCTTGATATTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAACAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCGTACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCAGATAAAGAAAAAGGATCGAAAAGT-CTTC---G-C----ACTACAAAGAAACAGAAATGATGATGAGGGAAATAGTTGTGTTGAGAATTAAGATGCAAGGTAGATGCAACAAAGTTGTGGTTGAACTCAGTTCTTCTTGGTAGTCAAAGTTTTTTACTTGTATTTTATACTACTACTACTAGAGCTTTATTTAGATATATCATAAGATCAAAATTTAGTGAAGGCAAAGGTCTTCCTTTTGATTGTTTCCACTTAATAATATGCCATTTTAAAAACAGCTGGTTAATTA---TGTTAACTAAAATCAGTTATTCTTATTTGGTTGATCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E549337" ref_strand="+" ref_description="SGN-E549337 [TUS-69-H20]">
      <seq>tcatcttcttgattcttcaataaaaaaatcaaaaaatttcttactctcagttttgcttataaagatctaatcttttctgaattgggtgaaagaaaaatcatgagaatataccaagaaatgaaagatgaagaagctcaatcaagaattagtacaaatacagtaacaacagtttcagtagtagcaacaccagcagcagcagcaacatcaactgtaaaaaaagatcaaggatttagtggggtatttggtaaaggtaaatacaaattgtgggtattggcagcaattcttttgctagctttttggtctatgtttactggctcacttactcttagtctcaactggtctacttcaaatctcagccgtttatctcatgcttctgatttcacgatccatgaagatcttgatattctggtgttggaggaaagagagaagatggtaaaacatatgtgggatgtgtacacacagaataacaggatcaggttgcctaagttctggcaagacgctttccaagcagcgtacctagatttgacgagtgattcaccagctacccgagacactgctgtgtcggagattgccaagatgtccctccgctccacttccacttatgaatcaccttccaacaagaaaccagaaccaagagaagcagataaagaaaaaggatcgaaaagtcttcgcactacaaagaaacagaaatgatgatgagggaaatagtttgtgttgagaattaagatgcaaggtagatgcaacaaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="51174" stop="54446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51474" g_stop="51895" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51896" i_stop="52729" i_length="834">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52730" g_stop="52956" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="635" r_length="227" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52957" i_stop="54023" i_length="1067">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54024" g_stop="54146" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="750" r_length="115" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E549337" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.029" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51474" e_stop="51895"/>
          <exon e_start="52730" e_stop="52956"/>
          <exon e_start="54024" e_stop="54146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCTTGATTCTTCAAAAATAAAAAATCAAAAAAATTCTTACTCTCAGTTTTGCTTATAAAGATCTAATCTTTTCTGAATTGGGTGAAAGAAAAATCATGAGAATATACCAAGAAATGAAAGATGAAGAAGCTCAATCAAGAATTAGTACAAATACAGTAACAACAGTTTCTTCAGTTTCAGCAGTAGCAACACCAGCAGCAGCAGCAGCAACATCAACTGTAAAAAAAGATCAAGGATTTAGTGGGGTTTTTGGTAAAGGTAAATACAAATTGTGGGTATTGGCTGCAATTCTTTTGCTAGCTTTTTGGTCTATGTTTACTGGCTCACTTACTCTTAGTCTCAACTGGTCTACTTCAAATCTCAGCCGTTTATCTCATGCTTCTGATTTCACGATCCATGAAGATCTTGATATTCTGGTAATGTTTCTTGATCCTTTTTGCTTGGTGGTTTAGTTTAGTTAAAGGCTAAATCTTGAGTAATTATGGAAAAAGATTTGATTTTTGGTACATGGGTCAGTTTGCTAAAAGGCAAATCATGAGTAATCATGAAAAAAGATTAGATTTTTGCTACATGGGTCAGTTTGCTAAATGGTAAATGTTAAGTAATTAAGAAAAAAAATTGATTGTTGCTAGATGGGTCATTTTGCTAACAGACAAAATCATAAGTTACTAAGAAAAAGGTTAAATTTTTGCTACATGGGTTAGTTTTCTAAAAGGCAAAATCATAAGTAATTAAGAAAAAGATTTGTTTTGCTACATGGGTCATTTTGCTAAAAGGCAAATCATAAAGAAAAATGATTTTTTTTTTTTGCTACATGGGTTGTTTACTTTAAAGGCAGATAGATTTTTGCTGTATATATTGTTAGTACTAGTATATATAGCAGACTCAGCTTGTTTAGTAATTGAAATTAGGTGATTATTGGTAGTATTAGGAGTACATTTCAGGTCAATCACCTCAAAAAGTTCTTTTCTTTTTTGCTTTCACTCTTTCTAATCTTCTTTGTCTACTTTAAATAGTGGTTTTGTTTTGTGGGTTTCTTGATTTCCTGATGTTTCACCATATCATGTGTAAAAACGTCGAATTGATTTTCTAGATATTAAAGCAAATCCTACATTTTTGCTTGATGTAGTAGTAATACAGTAAAGCTCATTTAAAGTTTGATTTTGAGATTAAGTTGATTGGATCAAGTAGGAGTACATTTTTACACCATTTTGTGTATTAAAATTTTGAAGTTTTCTACTGATTCGTAGGTATTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAGCAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCATACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAGGTAAATTTTTCCAGTGAGACTTGTTTTATTGTATATATATCAATCAACTACGCCTCAGTTCCAAACTAGTCGAAATCAGGCTGTATGAATTCTTGATATACGTTCTGCTCAAAGTTGTGACAGTAATTAGGGAGTTCCTTAATCCTTGTTCTTCTCTTTACTGTGCTTTGTCATATGGGATGAGAATTAGCTTAGCATGCAACTTAATCTTGAGGGGCAACCGTGGTCTAGTGGTAAATGAAATAGATTGAGAACTATGAAGCCTAAGGTTCATATTCCAACGGAAGCAAAACACTAGGTGATCTCTCCATTTCTCTCCAAGCCTCAGTGGATAGAGTTATGTGATGCCGGTGAGGTAGCAGATACCCAATCTGGTCCGGATACCACACCTATTAAAAAAAAAGTAGTCCAAAAGTCAAAACTGAGGAATTCTAACAAAATTTCTTTACTGCTTTTTAGTATATTGGATGATGATTTTTTATGGGGTTCTCTGTCTTGAGGAGTAACTATAAAAGTGTGGAAGGGTAGTTCAAGTTATCCTAAAATAGGTTGAAACTGAATATGCAGAGTATCTACTTCTAACTAGCAACTCTTTACTGTCCTATATCACATGGGGTGGTTATTTTTGTGGGGCATCCTAAAAAAAGTACTTCTCCTAAGTTTTCTTTAAATTCCTAAGAAGATATGAAACTAAATTTACACTAGAATTTGTGTAAGTCTAAGATCATCTCATCTTAAAGTTGAAGAACGTCTTTTTTATAGTGTGTATAACCTAAAAATGCAAAAGGGTAGTTCAAAGTTTTCCTAAAATTCCTAAGATTCGAAAATGAATCTACACTAGCATTTGTTGAACTGTGAGACTATCTCATCAAATACGTCGTTTGATAAAGGATATGATAGTGAGATTCCAACCACTACCTGCTTTGATACCATGTCGAAGTGTATAATCATGTTATTCAAAAGTTTGAACCATTAAAGAGCACACATTCATTTATTTAATTATATTCTCAACAAAGTTTACGTCTAACGAACTATTGTTGAATTTTGTTGGTTATGAATATGAACAGAGAAGCAGAGAAAGAAAAAGGATCTAAAAGTCCGGCGAAGACGATAACTACAAAGAAACAGAAATGATGATGAGGGAAAT-GGTTGTGTTGAGAATTAAGATGGAAGGTAGATGCAACAAAGTT</genome_strand>
        <mrna_strand>TCATCTTCTTGATTCTTC-AATA-AAAAAATCAAAAAATTTCTTACTCTCAGTTTTGCTTATAAAGATCTAATCTTTTCTGAATTGGGTGAAAGAAAAATCATGAGAATATACCAAGAAATGAAAGATGAAGAAGCTCAATCAAGAATTAGTACAAATACAGTAACAACAG--T-TTCAG--T----AGTAGCAACA-C--CAGCAGCAGCAGCAACATCAACTGTAAAAAAAGATCAAGGATTTAGTGGGGTATTTGGTAAAGGTAAATACAAATTGTGGGTATTGGCAGCAATTCTTTTGCTAGCTTTTTGGTCTATGTTTACTGGCTCACTTACTCTTAGTCTCAACTGGTCTACTTCAAATCTCAGCCGTTTATCTCATGCTTCTGATTTCACGATCCATGAAGATCTTGATATTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAACAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCGTACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCAGATAAAGAAAAAGGATCGAAAAGT-CTTC---G-C----ACTACAAAGAAACAGAAATGATGATGAGGGAAATAGTTTGTGTTGAGAATTAAGATGCAAGGTAGATGCAACAAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E546237" ref_strand="+" ref_description="SGN-E546237 [TUS-69-H24]">
      <seq>tcatcttcttgattcttcaataaaaaaatcaaaaaatttcttactctcagttttgcttataaagatctaatcttttctgaattgggtgaaagaaaaatcatgagaatataccaagaaatgaaagatgaagaagctcaatcaagaattagtacaaatacagtaacaacagtttcagtagtagcaacaccagcagcagcagcaacatcaactgtaaaaaaagatcaaggatttagtggggtatttggtaaaggtaaatacaaattgtgggtattggcagcaattcttttgctagctttttggtctatgtttactggctcacttactcttagtctcaactggtctacttcaaatctcagccgtttatctcatgcttctgatttcacgatccatgaagatcttgatattctggtgttggaggaaagagagaagatggtaaaacatatgtgggatgtgtacacacagaataacaggatcaggttgcctaagttctggcaagacgctttccaagcagcgtatctagatttgacgagtgattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="51174" stop="53159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51474" g_stop="51895" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51896" i_stop="52729" i_length="834">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52730" g_stop="52859" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="538" r_length="130" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E546237" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51474" e_stop="51895"/>
          <exon e_start="52730" e_stop="52859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCTTGATTCTTCAAAAATAAAAAATCAAAAAAATTCTTACTCTCAGTTTTGCTTATAAAGATCTAATCTTTTCTGAATTGGGTGAAAGAAAAATCATGAGAATATACCAAGAAATGAAAGATGAAGAAGCTCAATCAAGAATTAGTACAAATACAGTAACAACAGTTTCTTCAGTTTCAGCAGTAGCAACACCAGCAGCAGCAGCAGCAACATCAACTGTAAAAAAAGATCAAGGATTTAGTGGGGTTTTTGGTAAAGGTAAATACAAATTGTGGGTATTGGCTGCAATTCTTTTGCTAGCTTTTTGGTCTATGTTTACTGGCTCACTTACTCTTAGTCTCAACTGGTCTACTTCAAATCTCAGCCGTTTATCTCATGCTTCTGATTTCACGATCCATGAAGATCTTGATATTCTGGTAATGTTTCTTGATCCTTTTTGCTTGGTGGTTTAGTTTAGTTAAAGGCTAAATCTTGAGTAATTATGGAAAAAGATTTGATTTTTGGTACATGGGTCAGTTTGCTAAAAGGCAAATCATGAGTAATCATGAAAAAAGATTAGATTTTTGCTACATGGGTCAGTTTGCTAAATGGTAAATGTTAAGTAATTAAGAAAAAAAATTGATTGTTGCTAGATGGGTCATTTTGCTAACAGACAAAATCATAAGTTACTAAGAAAAAGGTTAAATTTTTGCTACATGGGTTAGTTTTCTAAAAGGCAAAATCATAAGTAATTAAGAAAAAGATTTGTTTTGCTACATGGGTCATTTTGCTAAAAGGCAAATCATAAAGAAAAATGATTTTTTTTTTTTGCTACATGGGTTGTTTACTTTAAAGGCAGATAGATTTTTGCTGTATATATTGTTAGTACTAGTATATATAGCAGACTCAGCTTGTTTAGTAATTGAAATTAGGTGATTATTGGTAGTATTAGGAGTACATTTCAGGTCAATCACCTCAAAAAGTTCTTTTCTTTTTTGCTTTCACTCTTTCTAATCTTCTTTGTCTACTTTAAATAGTGGTTTTGTTTTGTGGGTTTCTTGATTTCCTGATGTTTCACCATATCATGTGTAAAAACGTCGAATTGATTTTCTAGATATTAAAGCAAATCCTACATTTTTGCTTGATGTAGTAGTAATACAGTAAAGCTCATTTAAAGTTTGATTTTGAGATTAAGTTGATTGGATCAAGTAGGAGTACATTTTTACACCATTTTGTGTATTAAAATTTTGAAGTTTTCTACTGATTCGTAGGTATTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAGCAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCATACCTAGATTTGACGAGTGATTCAC</genome_strand>
        <mrna_strand>TCATCTTCTTGATTCTTC-AATA-AAAAAATCAAAAAATTTCTTACTCTCAGTTTTGCTTATAAAGATCTAATCTTTTCTGAATTGGGTGAAAGAAAAATCATGAGAATATACCAAGAAATGAAAGATGAAGAAGCTCAATCAAGAATTAGTACAAATACAGTAACAACAG--T-TTCAG--T----AGTAGCAACA-C--CAGCAGCAGCAGCAACATCAACTGTAAAAAAAGATCAAGGATTTAGTGGGGTATTTGGTAAAGGTAAATACAAATTGTGGGTATTGGCAGCAATTCTTTTGCTAGCTTTTTGGTCTATGTTTACTGGCTCACTTACTCTTAGTCTCAACTGGTCTACTTCAAATCTCAGCCGTTTATCTCATGCTTCTGATTTCACGATCCATGAAGATCTTGATATTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAACAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCGTATCTAGATTTGACGAGTGATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E710179" ref_strand="+" ref_description="SGN-E710179 [FA54CA09]">
      <seq>cttgattcttcaaaaataaaaaatcaaaaaaattcttactctcagttttgcttataaagatctaatcttttctgaattgggtgaaagaaaaatcatgagaatataccaagaaatgaaagatgaagaagctcaatcaagaattagtacaaacacagtaacaacagtttcttcagtttcagtagtagcaacaccagcagcagcagcagcaacatcaactgtaaaaaaaagatcaaggatttagtggggtttttggtaaaggtaaatacaaattgtgggtattggctgcaattcttttgctagctttttggtctatgtttactggctcacttactcttagtctcaactggtctacttcaaatctcagccgtttatctcatgcttctgatttcacgatccatgaagatcttgatattctggtattggaggaaagagagaagatggtaaaacatatgtgggatgtgtacacacagaatagcaggatcaggttgcctaagttctggcaagacgctttccaagcagcgtacctagatttgacgagtgattcaccagctacccgagacactgctgtgtcggagattgccaagatgtccctgcgctccacttccacttatgaatcaccttccaacaagaaaccagaaccaagagaagcagagaaagaaaaaggatctaaaagtccggcgaagacgacaactacaaagaaacagaaatgatgatgagggaaatggttgtgttgagaattaagatggaaggtagatgcaacaaagttgtggttgaactcattcttcttggtagtcaaagtcctttacttgaatttatactactactactagagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="51181" stop="54515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51481" g_stop="51895" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51896" i_stop="52729" i_length="834">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52730" g_stop="52956" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="643" r_length="227" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52957" i_stop="54023" i_length="1067">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54024" g_stop="54215" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="835" r_length="192" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E710179" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51481" e_stop="51895"/>
          <exon e_start="52730" e_stop="52956"/>
          <exon e_start="54024" e_stop="54215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTCTTCAAAAATAAAAAATCAAAAAAATTCTTACTCTCAGTTTTGCTTATAAAGATCTAATCTTTTCTGAATTGGGTGAAAGAAAAATCATGAGAATATACCAAGAAATGAAAGATGAAGAAGCTCAATCAAGAATTAGTACAAATACAGTAACAACAGTTTCTTCAGTTTCAGCAGTAGCAACACCAGCAGCAGCAGCAGCAACATCAACTGT-AAAAAAAGATCAAGGATTTAGTGGGGTTTTTGGTAAAGGTAAATACAAATTGTGGGTATTGGCTGCAATTCTTTTGCTAGCTTTTTGGTCTATGTTTACTGGCTCACTTACTCTTAGTCTCAACTGGTCTACTTCAAATCTCAGCCGTTTATCTCATGCTTCTGATTTCACGATCCATGAAGATCTTGATATTCTGGTAATGTTTCTTGATCCTTTTTGCTTGGTGGTTTAGTTTAGTTAAAGGCTAAATCTTGAGTAATTATGGAAAAAGATTTGATTTTTGGTACATGGGTCAGTTTGCTAAAAGGCAAATCATGAGTAATCATGAAAAAAGATTAGATTTTTGCTACATGGGTCAGTTTGCTAAATGGTAAATGTTAAGTAATTAAGAAAAAAAATTGATTGTTGCTAGATGGGTCATTTTGCTAACAGACAAAATCATAAGTTACTAAGAAAAAGGTTAAATTTTTGCTACATGGGTTAGTTTTCTAAAAGGCAAAATCATAAGTAATTAAGAAAAAGATTTGTTTTGCTACATGGGTCATTTTGCTAAAAGGCAAATCATAAAGAAAAATGATTTTTTTTTTTTGCTACATGGGTTGTTTACTTTAAAGGCAGATAGATTTTTGCTGTATATATTGTTAGTACTAGTATATATAGCAGACTCAGCTTGTTTAGTAATTGAAATTAGGTGATTATTGGTAGTATTAGGAGTACATTTCAGGTCAATCACCTCAAAAAGTTCTTTTCTTTTTTGCTTTCACTCTTTCTAATCTTCTTTGTCTACTTTAAATAGTGGTTTTGTTTTGTGGGTTTCTTGATTTCCTGATGTTTCACCATATCATGTGTAAAAACGTCGAATTGATTTTCTAGATATTAAAGCAAATCCTACATTTTTGCTTGATGTAGTAGTAATACAGTAAAGCTCATTTAAAGTTTGATTTTGAGATTAAGTTGATTGGATCAAGTAGGAGTACATTTTTACACCATTTTGTGTATTAAAATTTTGAAGTTTTCTACTGATTCGTAGGTATTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAGCAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCATACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAGGTAAATTTTTCCAGTGAGACTTGTTTTATTGTATATATATCAATCAACTACGCCTCAGTTCCAAACTAGTCGAAATCAGGCTGTATGAATTCTTGATATACGTTCTGCTCAAAGTTGTGACAGTAATTAGGGAGTTCCTTAATCCTTGTTCTTCTCTTTACTGTGCTTTGTCATATGGGATGAGAATTAGCTTAGCATGCAACTTAATCTTGAGGGGCAACCGTGGTCTAGTGGTAAATGAAATAGATTGAGAACTATGAAGCCTAAGGTTCATATTCCAACGGAAGCAAAACACTAGGTGATCTCTCCATTTCTCTCCAAGCCTCAGTGGATAGAGTTATGTGATGCCGGTGAGGTAGCAGATACCCAATCTGGTCCGGATACCACACCTATTAAAAAAAAAGTAGTCCAAAAGTCAAAACTGAGGAATTCTAACAAAATTTCTTTACTGCTTTTTAGTATATTGGATGATGATTTTTTATGGGGTTCTCTGTCTTGAGGAGTAACTATAAAAGTGTGGAAGGGTAGTTCAAGTTATCCTAAAATAGGTTGAAACTGAATATGCAGAGTATCTACTTCTAACTAGCAACTCTTTACTGTCCTATATCACATGGGGTGGTTATTTTTGTGGGGCATCCTAAAAAAAGTACTTCTCCTAAGTTTTCTTTAAATTCCTAAGAAGATATGAAACTAAATTTACACTAGAATTTGTGTAAGTCTAAGATCATCTCATCTTAAAGTTGAAGAACGTCTTTTTTATAGTGTGTATAACCTAAAAATGCAAAAGGGTAGTTCAAAGTTTTCCTAAAATTCCTAAGATTCGAAAATGAATCTACACTAGCATTTGTTGAACTGTGAGACTATCTCATCAAATACGTCGTTTGATAAAGGATATGATAGTGAGATTCCAACCACTACCTGCTTTGATACCATGTCGAAGTGTATAATCATGTTATTCAAAAGTTTGAACCATTAAAGAGCACACATTCATTTATTTAATTATATTCTCAACAAAGTTTACGTCTAACGAACTATTGTTGAATTTTGTTGGTTATGAATATGAACAGAGAAGCAGAGAAAGAAAAAGGATCTAAAAGTCCGGCGAAGACGATAACTACAAAGAAACAGAAATGATGATGAGGGAAATGGTTGTGTTGAGAATTAAGATGGAAGGTAGATGCAACAAAGTTGTGGTTGAACTCATTCTTCTTGGTAGTCAAAGTTCTTTACTTGTATTTATACTACTACTACTAGAGCTT</genome_strand>
        <mrna_strand>CTTGATTCTTCAAAAATAAAAAATCAAAAAAATTCTTACTCTCAGTTTTGCTTATAAAGATCTAATCTTTTCTGAATTGGGTGAAAGAAAAATCATGAGAATATACCAAGAAATGAAAGATGAAGAAGCTCAATCAAGAATTAGTACAAACACAGTAACAACAGTTTCTTCAGTTTCAGTAGTAGCAACACCAGCAGCAGCAGCAGCAACATCAACTGTAAAAAAAAGATCAAGGATTTAGTGGGGTTTTTGGTAAAGGTAAATACAAATTGTGGGTATTGGCTGCAATTCTTTTGCTAGCTTTTTGGTCTATGTTTACTGGCTCACTTACTCTTAGTCTCAACTGGTCTACTTCAAATCTCAGCCGTTTATCTCATGCTTCTGATTTCACGATCCATGAAGATCTTGATATTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAGCAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCGTACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTGCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCAGAGAAAGAAAAAGGATCTAAAAGTCCGGCGAAGACGACAACTACAAAGAAACAGAAATGATGATGAGGGAAATGGTTGTGTTGAGAATTAAGATGGAAGGTAGATGCAACAAAGTTGTGGTTGAACTCATTCTTCTTGGTAGTCAAAGTCCTTTACTTGAATTTATACTACTACTACTAGAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E546230" ref_strand="-" ref_description="SGN-E546230 [TUS-69-H20]">
      <seq>gcagcagcaacatcaactgtaaaaaaagatcaaggatttagtggggtattggtaaaggtaaatacaaattgtgggtatgggcagcaattcttttgctagctttttggtctatgtttactggctcacttactcttagtctcaactggtctacttcaaatctcagccgtttatctcatgcttctgatttcacgatccatgaagatcttgatattctggtgttggaggaaagagagaagatggtaaaacatatgtgggatgtgtacacacagaataacaggatcaggttgcctaagttctggcaagacgctttccaagcagcgtacctagatttgacgagtgattcaccagctacccgagacactgctgtgtcggagattgccaagatgtccctccgctccacttccacttatgaatcaccttccaacaagaaaccagaaccaagagaagcagataaagaaaaaggatcgaaaagtcttcgcactacaaagaaacagaaatgatgatgagggaaatagttgtgttgagaattaagatgcaaggtagatgcaacaaagttgtggttgaactcagttcttcttggtagtcaaagttttttacttgtattttatactactactactagagctttatttagatatatcataagatcaaaatttagtgaaggcaaaggtcttccttttgattgtttccacttaataatatgccattttaaaaacagctggttaattatgttaactaaaatcagttattcttatttggttgatccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="51380" stop="54667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51680" g_stop="51895" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51896" i_stop="52729" i_length="834">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52730" g_stop="52956" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="442" r_length="227" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52957" i_stop="54023" i_length="1067">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54024" g_stop="54370" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="779" r_length="337" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E546230" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546230" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51680" e_stop="51895"/>
          <exon e_start="52730" e_stop="52956"/>
          <exon e_start="54024" e_stop="54370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAGCAACATCAACTGTAAAAAAAGATCAAGGATTTAGTGGGGTTTTTGGTAAAGGTAAATACAAATTGTGGGTATTGGCTGCAATTCTTTTGCTAGCTTTTTGGTCTATGTTTACTGGCTCACTTACTCTTAGTCTCAACTGGTCTACTTCAAATCTCAGCCGTTTATCTCATGCTTCTGATTTCACGATCCATGAAGATCTTGATATTCTGGTAATGTTTCTTGATCCTTTTTGCTTGGTGGTTTAGTTTAGTTAAAGGCTAAATCTTGAGTAATTATGGAAAAAGATTTGATTTTTGGTACATGGGTCAGTTTGCTAAAAGGCAAATCATGAGTAATCATGAAAAAAGATTAGATTTTTGCTACATGGGTCAGTTTGCTAAATGGTAAATGTTAAGTAATTAAGAAAAAAAATTGATTGTTGCTAGATGGGTCATTTTGCTAACAGACAAAATCATAAGTTACTAAGAAAAAGGTTAAATTTTTGCTACATGGGTTAGTTTTCTAAAAGGCAAAATCATAAGTAATTAAGAAAAAGATTTGTTTTGCTACATGGGTCATTTTGCTAAAAGGCAAATCATAAAGAAAAATGATTTTTTTTTTTTGCTACATGGGTTGTTTACTTTAAAGGCAGATAGATTTTTGCTGTATATATTGTTAGTACTAGTATATATAGCAGACTCAGCTTGTTTAGTAATTGAAATTAGGTGATTATTGGTAGTATTAGGAGTACATTTCAGGTCAATCACCTCAAAAAGTTCTTTTCTTTTTTGCTTTCACTCTTTCTAATCTTCTTTGTCTACTTTAAATAGTGGTTTTGTTTTGTGGGTTTCTTGATTTCCTGATGTTTCACCATATCATGTGTAAAAACGTCGAATTGATTTTCTAGATATTAAAGCAAATCCTACATTTTTGCTTGATGTAGTAGTAATACAGTAAAGCTCATTTAAAGTTTGATTTTGAGATTAAGTTGATTGGATCAAGTAGGAGTACATTTTTACACCATTTTGTGTATTAAAATTTTGAAGTTTTCTACTGATTCGTAGGTATTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAGCAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCATACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAGGTAAATTTTTCCAGTGAGACTTGTTTTATTGTATATATATCAATCAACTACGCCTCAGTTCCAAACTAGTCGAAATCAGGCTGTATGAATTCTTGATATACGTTCTGCTCAAAGTTGTGACAGTAATTAGGGAGTTCCTTAATCCTTGTTCTTCTCTTTACTGTGCTTTGTCATATGGGATGAGAATTAGCTTAGCATGCAACTTAATCTTGAGGGGCAACCGTGGTCTAGTGGTAAATGAAATAGATTGAGAACTATGAAGCCTAAGGTTCATATTCCAACGGAAGCAAAACACTAGGTGATCTCTCCATTTCTCTCCAAGCCTCAGTGGATAGAGTTATGTGATGCCGGTGAGGTAGCAGATACCCAATCTGGTCCGGATACCACACCTATTAAAAAAAAAGTAGTCCAAAAGTCAAAACTGAGGAATTCTAACAAAATTTCTTTACTGCTTTTTAGTATATTGGATGATGATTTTTTATGGGGTTCTCTGTCTTGAGGAGTAACTATAAAAGTGTGGAAGGGTAGTTCAAGTTATCCTAAAATAGGTTGAAACTGAATATGCAGAGTATCTACTTCTAACTAGCAACTCTTTACTGTCCTATATCACATGGGGTGGTTATTTTTGTGGGGCATCCTAAAAAAAGTACTTCTCCTAAGTTTTCTTTAAATTCCTAAGAAGATATGAAACTAAATTTACACTAGAATTTGTGTAAGTCTAAGATCATCTCATCTTAAAGTTGAAGAACGTCTTTTTTATAGTGTGTATAACCTAAAAATGCAAAAGGGTAGTTCAAAGTTTTCCTAAAATTCCTAAGATTCGAAAATGAATCTACACTAGCATTTGTTGAACTGTGAGACTATCTCATCAAATACGTCGTTTGATAAAGGATATGATAGTGAGATTCCAACCACTACCTGCTTTGATACCATGTCGAAGTGTATAATCATGTTATTCAAAAGTTTGAACCATTAAAGAGCACACATTCATTTATTTAATTATATTCTCAACAAAGTTTACGTCTAACGAACTATTGTTGAATTTTGTTGGTTATGAATATGAACAGAGAAGCAGAGAAAGAAAAAGGATCTAAAAGTCCGGCGAAGACGATAACTACAAAGAAACAGAAATGATGATGAGGGAAATGGTTGTGTTGAGAATTAAGATGGAAGGTAGATGCAACAAAGTTGTGGTTGAACTCA-TTCTTCTTGGTAGTCAAAGTTCTTTACTTGTA-TTTATACTACTACTACTAGAGCTTTATTTAGATATATCATAAGATCAAAATTTAGTGAAGGCAAAGGTCTTCCTTTTGATTGTTTCCACTTAATAATATGCCATTTCAAAACCAGCTGGTTAATTATGTTGTTAACTAAAATCGGTTATTCTTATTTGGTTGATCCAAATCATATAGTA</genome_strand>
        <mrna_strand>GCAGCAGCAACATCAACTGTAAAAAAAGATCAAGGATTTAGTGGGG-TATTGGTAAAGGTAAATACAAATTGTGGGTATGGGCAGCAATTCTTTTGCTAGCTTTTTGGTCTATGTTTACTGGCTCACTTACTCTTAGTCTCAACTGGTCTACTTCAAATCTCAGCCGTTTATCTCATGCTTCTGATTTCACGATCCATGAAGATCTTGATATTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAACAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCGTACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCAGATAAAGAAAAAGGATCGAAAAGT-CTTC---G-C----ACTACAAAGAAACAGAAATGATGATGAGGGAAATAGTTGTGTTGAGAATTAAGATGCAAGGTAGATGCAACAAAGTTGTGGTTGAACTCAGTTCTTCTTGGTAGTCAAAGTTTTTTACTTGTATTTTATACTACTACTACTAGAGCTTTATTTAGATATATCATAAGATCAAAATTTAGTGAAGGCAAAGGTCTTCCTTTTGATTGTTTCCACTTAATAATATGCCATTTTAAAAACAGCTGGTTAATTA---TGTTAACTAAAATCAGTTATTCTTATTTGGTTGATCCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E244747" ref_strand="+" ref_description="SGN-E244747 [cLED-38-J9]">
      <seq>gatcttgatattctggtattggaggaaagagagaagatggtaaaacatatgtgggatgtgtacacacagaatagcaggatcaggttgcctaagttctggcaagacgctttccaagcagcatacctagatttgacgagtgattcaccagctacccgagacactgctgtgtcggagattgccaagatgtccctccgctccacttccacttatgaatcaccttccaacaagaaaccagaaccaagagaagcagagaaagaaaaaggatctaaaagtccggcgaagacgataactacaaagaaacagaaatgatgatgagggaaatggttgtgttgagaattaagatggaaggtagatgcaacaaagttgtggttgaactcattcttcttggtagtcaaagttctttacttgtatttatactactactactagagctttatttagatatatcataagatcaaaatttagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="52415" stop="54548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52730" g_stop="52956" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="242" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52957" i_stop="54023" i_length="1067">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54024" g_stop="54248" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="467" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E244747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52730" e_stop="52956"/>
          <exon e_start="54024" e_stop="54248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAGCAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCATACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAGGTAAATTTTTCCAGTGAGACTTGTTTTATTGTATATATATCAATCAACTACGCCTCAGTTCCAAACTAGTCGAAATCAGGCTGTATGAATTCTTGATATACGTTCTGCTCAAAGTTGTGACAGTAATTAGGGAGTTCCTTAATCCTTGTTCTTCTCTTTACTGTGCTTTGTCATATGGGATGAGAATTAGCTTAGCATGCAACTTAATCTTGAGGGGCAACCGTGGTCTAGTGGTAAATGAAATAGATTGAGAACTATGAAGCCTAAGGTTCATATTCCAACGGAAGCAAAACACTAGGTGATCTCTCCATTTCTCTCCAAGCCTCAGTGGATAGAGTTATGTGATGCCGGTGAGGTAGCAGATACCCAATCTGGTCCGGATACCACACCTATTAAAAAAAAAGTAGTCCAAAAGTCAAAACTGAGGAATTCTAACAAAATTTCTTTACTGCTTTTTAGTATATTGGATGATGATTTTTTATGGGGTTCTCTGTCTTGAGGAGTAACTATAAAAGTGTGGAAGGGTAGTTCAAGTTATCCTAAAATAGGTTGAAACTGAATATGCAGAGTATCTACTTCTAACTAGCAACTCTTTACTGTCCTATATCACATGGGGTGGTTATTTTTGTGGGGCATCCTAAAAAAAGTACTTCTCCTAAGTTTTCTTTAAATTCCTAAGAAGATATGAAACTAAATTTACACTAGAATTTGTGTAAGTCTAAGATCATCTCATCTTAAAGTTGAAGAACGTCTTTTTTATAGTGTGTATAACCTAAAAATGCAAAAGGGTAGTTCAAAGTTTTCCTAAAATTCCTAAGATTCGAAAATGAATCTACACTAGCATTTGTTGAACTGTGAGACTATCTCATCAAATACGTCGTTTGATAAAGGATATGATAGTGAGATTCCAACCACTACCTGCTTTGATACCATGTCGAAGTGTATAATCATGTTATTCAAAAGTTTGAACCATTAAAGAGCACACATTCATTTATTTAATTATATTCTCAACAAAGTTTACGTCTAACGAACTATTGTTGAATTTTGTTGGTTATGAATATGAACAGAGAAGCAGAGAAAGAAAAAGGATCTAAAAGTCCGGCGAAGACGATAACTACAAAGAAACAGAAATGATGATGAGGGAAATGGTTGTGTTGAGAATTAAGATGGAAGGTAGATGCAACAAAGTTGTGGTTGAACTCATTCTTCTTGGTAGTCAAAGTTCTTTACTTGTATTTATACTACTACTACTAGAGCTTTATTTAGATATATCATAAGATCAAAATTTAGTG</genome_strand>
        <mrna_strand>GTATTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAGCAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCATACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCAGAGAAAGAAAAAGGATCTAAAAGTCCGGCGAAGACGATAACTACAAAGAAACAGAAATGATGATGAGGGAAATGGTTGTGTTGAGAATTAAGATGGAAGGTAGATGCAACAAAGTTGTGGTTGAACTCATTCTTCTTGGTAGTCAAAGTTCTTTACTTGTATTTATACTACTACTACTAGAGCTTTATTTAGATATATCATAAGATCAAAATTTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E287522" ref_strand="-" ref_description="SGN-E287522 [cLES-9-B1]">
      <seq>tccaagcagcatacctagatttgacgagtgattcaccagctacccgagacactgctgtgtcggagattgccaagatgtccctccgctccacttccacttatgaatcaccttccaccaagaatccagagccaagagaagcagagaaagaaaaaggatctaaaagtccggcgaagtcgataactacaaagaaacagaaatgatgatgagggaaatggttgtgttgagaattaagatggaaggtagatgcaacaaagttgtggttgaactcattcttcttggtagtcaaagttctttacttgtatttatactactactactagagctttattttgatcttatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="52524" stop="54532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52824" g_stop="52956" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52957" i_stop="54023" i_length="1067">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54024" g_stop="54232" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="343" r_length="210" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E287522" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287522" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52824" e_stop="52956"/>
          <exon e_start="54024" e_stop="54232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGCAGCATACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAGGTAAATTTTTCCAGTGAGACTTGTTTTATTGTATATATATCAATCAACTACGCCTCAGTTCCAAACTAGTCGAAATCAGGCTGTATGAATTCTTGATATACGTTCTGCTCAAAGTTGTGACAGTAATTAGGGAGTTCCTTAATCCTTGTTCTTCTCTTTACTGTGCTTTGTCATATGGGATGAGAATTAGCTTAGCATGCAACTTAATCTTGAGGGGCAACCGTGGTCTAGTGGTAAATGAAATAGATTGAGAACTATGAAGCCTAAGGTTCATATTCCAACGGAAGCAAAACACTAGGTGATCTCTCCATTTCTCTCCAAGCCTCAGTGGATAGAGTTATGTGATGCCGGTGAGGTAGCAGATACCCAATCTGGTCCGGATACCACACCTATTAAAAAAAAAGTAGTCCAAAAGTCAAAACTGAGGAATTCTAACAAAATTTCTTTACTGCTTTTTAGTATATTGGATGATGATTTTTTATGGGGTTCTCTGTCTTGAGGAGTAACTATAAAAGTGTGGAAGGGTAGTTCAAGTTATCCTAAAATAGGTTGAAACTGAATATGCAGAGTATCTACTTCTAACTAGCAACTCTTTACTGTCCTATATCACATGGGGTGGTTATTTTTGTGGGGCATCCTAAAAAAAGTACTTCTCCTAAGTTTTCTTTAAATTCCTAAGAAGATATGAAACTAAATTTACACTAGAATTTGTGTAAGTCTAAGATCATCTCATCTTAAAGTTGAAGAACGTCTTTTTTATAGTGTGTATAACCTAAAAATGCAAAAGGGTAGTTCAAAGTTTTCCTAAAATTCCTAAGATTCGAAAATGAATCTACACTAGCATTTGTTGAACTGTGAGACTATCTCATCAAATACGTCGTTTGATAAAGGATATGATAGTGAGATTCCAACCACTACCTGCTTTGATACCATGTCGAAGTGTATAATCATGTTATTCAAAAGTTTGAACCATTAAAGAGCACACATTCATTTATTTAATTATATTCTCAACAAAGTTTACGTCTAACGAACTATTGTTGAATTTTGTTGGTTATGAATATGAACAGAGAAGCAGAGAAAGAAAAAGGATCTAAAAGTCCGGCGAAGACGATAACTACAAAGAAACAGAAATGATGATGAGGGAAATGGTTGTGTTGAGAATTAAGATGGAAGGTAGATGCAACAAAGTTGTGGTTGAACTCATTCTTCTTGGTAGTCAAAGTTCTTTACTTGTATTTATACTACTACTACTAGAGCTTTATTTAGAT-ATATCATA</genome_strand>
        <mrna_strand>TCCAAGCAGCATACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCACCAAGAATCCAGAGCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCAGAGAAAGAAAAAGGATCTAAAAGTCCGGCGAAGTCGATAACTACAAAGAAACAGAAATGATGATGAGGGAAATGGTTGTGTTGAGAATTAAGATGGAAGGTAGATGCAACAAAGTTGTGGTTGAACTCATTCTTCTTGGTAGTCAAAGTTCTTTACTTGTATTTATACTACTACTACTAGAGCTTTATTTTGATCTTATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E218557" ref_strand="+" ref_description="SGN-E218557 [cLEL-18-F5]">
      <seq>ttttttttttttttttttntnnnnntnnagaagacctaaagtcagaaatagtatcacaaaaattgctttgagcagattaaatagtactgcttctgttgctagataatcctaaagcatttacaaacattctcaaacacaaagtatgtaccctccctcattctacctaatcttctacagtctgaatctctcccatcattatccggttgctaaccacattgaagcccaactctgaaaggttaacctttttgcccttcttacccttcttctttcctccctttgaggcccaatcctgaacacttgagttgccctggtcaaagccaacactgttagaagtcacatttttggcacttgcaccagtgaccttacgatcattacgaccctggaaggccatgtcaaaaacatccgcaggcaaaaagtctttgtagttgaggaacttgtcaatgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="55420" stop="56439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55692" g_stop="56139" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E218557" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55692" e_stop="56139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTTTAATTCTGATTGAATCTGATTTAGAAGACCTAAAGTCAGAAATAGTATCACAAAAATTGCTTTGAGCAGATTAAATAGTACTGCTTCTGTTGCTGGATAATCCTAAAGCATTTACAAACATTCTCAAACACAAAGTATGTACCCTCCCTCATTCTACCTAATCTTCTACAGTCTGAATCTCTCCCATCATTATCCGGTTGCTAACCACATTGAAGCCCAACTCTGAAAGGTTAACCTTCTTGCCCTTCTTACCCTTCTTCTTTCCTCCCTTTGAGGCCCAATCCTGAACACTTGAGTTGCCCTGGTCAAAGCCAACACTGTTAGAAGTCACATTTTTGGCACTTGCACCAGTGACCTTACGATCATTACGACCCTGGAAGGCCATGTCAAAAACATCCGCAGGCAAAAAGTCTTTGTAGTTGAGGAACTTGTCAATGAATTC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTNTNNNNNTNNAGAAGACCTAAAGTCAGAAATAGTATCACAAAAATTGCTTTGAGCAGATTAAATAGTACTGCTTCTGTTGCTAGATAATCCTAAAGCATTTACAAACATTCTCAAACACAAAGTATGTACCCTCCCTCATTCTACCTAATCTTCTACAGTCTGAATCTCTCCCATCATTATCCGGTTGCTAACCACATTGAAGCCCAACTCTGAAAGGTTAACCTTTTTGCCCTTCTTACCCTTCTTCTTTCCTCCCTTTGAGGCCCAATCCTGAACACTTGAGTTGCCCTGGTCAAAGCCAACACTGTTAGAAGTCACATTTTTGGCACTTGCACCAGTGACCTTACGATCATTACGACCCTGGAAGGCCATGTCAAAAACATCCGCAGGCAAAAAGTCTTTGTAGTTGAGGAACTTGTCAATGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E370205" ref_strand="-" ref_description="SGN-E370205 [TUS-28-A2]">
      <seq>aaagcattcaaaagcaatggatttcagagaatggtgtgagaatgaatgtgataggctcattggtacaagagataccagctttctggacttctgtttcaagcaatccaagtcaaaggctgaaatgcttctgatagagaatcttggctcttatgatcctgatcatgaattcattgacaagttcctcaactacaaagactttttgcctgcggatgtttttgacatggccttccagggtcgtaatgatcgtaaggtcactggtgcaagtgccaaaaatgtgacttctaacagtgttggctttgaccagggcaactcaagtgttcaggattgggcctcaaagggaggaaagaagaagggtaagaagggcaagaaggttaacctttcagagttgggcttcaatgtggttagcaaccggataatgatgggagagattcagactgtagaagattaggtagaatgagggagggtacatactttgtgtttgagaatgtttgtaaatgctttaggattatctagcaacagaagcagtactatttaatctgctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="56810" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56620" g_stop="56610" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56609" i_stop="56506" i_length="104">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56505" g_stop="56446" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="71" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56445" i_stop="56232" i_length="214">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56231" g_stop="55758" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="545" r_length="474" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E370205" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370205" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56620" e_stop="56610"/>
          <exon e_start="56505" e_stop="56446"/>
          <exon e_start="56231" e_stop="55758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCATTCAGGTAACCATTTGTTTTTTAAGAACTAATCAAAGATCTAAAGTAAACATTGTTTCTCAGCGGAAAAAGAAAAAAAAATATTAACACAATTTTCTTCTTTGTTTCAGAAGCAATGGATTTCAGAGAATGGTGTGAGAATGAATGTGATAGGCTCATTGGTACAAGAGGTATTTTTTAGAATTATCTCTCTTCTGGAATACTTTATTGCTCACTTGATTTAGATCTCTCTTCTGGAATACTTTATCACCCCATATATTTTGAATTGTGTCGGTAGTTGAGGAATTTCTCAAGTCCTACACTTTGACTGATGCTGAGAGTATCTACGTAGGACTATGCTGACAGTTTGTCTGATGTTTTCCCAAATTATTTTTGTTCATTCAGATACCAGCTTTCTGGACTTCTGTTTCAAGCAATCCAAGTCAGAGGCTGAAATGCTTCTGATAGAGAATCTTGGCTCTTATGATCCTGATCATGAATTCATTGACAAGTTCCTCAACTACAAAGACTTTTTGCCTGCGGATGTTTTTGACATGGCCTTCCAGGGTCGTAATGATCGTAAGGTCACTGGTGCAAGTGCCAAAAATGTGACTTCTAACAGTGTTGGCTTTGACCAGGGCAACTCAAGTGTTCAGGATTGGGCCTCAAAGGGAGGAAAGAAGAAGGGTAAGAAGGGCAAGAAGGTTAACCTTTCAGAGTTGGGCTTCAATGTGGTTAGCAACCGGATAATGATGGGAGAGATTCAGACTGTAGAAGATTAGGTAGAATGAGGGAGGGTACATACTTTGTGTTTGAGAATGTTTGTAAATGCTTTAGGATTATCCAGCAACAGAAGCAGTACTATTTAATCTGCTCAAA</genome_strand>
        <mrna_strand>AAAGCATTCAA........................................................................................................AAGCAATGGATTTCAGAGAATGGTGTGAGAATGAATGTGATAGGCTCATTGGTACAAGAG......................................................................................................................................................................................................................ATACCAGCTTTCTGGACTTCTGTTTCAAGCAATCCAAGTCAAAGGCTGAAATGCTTCTGATAGAGAATCTTGGCTCTTATGATCCTGATCATGAATTCATTGACAAGTTCCTCAACTACAAAGACTTTTTGCCTGCGGATGTTTTTGACATGGCCTTCCAGGGTCGTAATGATCGTAAGGTCACTGGTGCAAGTGCCAAAAATGTGACTTCTAACAGTGTTGGCTTTGACCAGGGCAACTCAAGTGTTCAGGATTGGGCCTCAAAGGGAGGAAAGAAGAAGGGTAAGAAGGGCAAGAAGGTTAACCTTTCAGAGTTGGGCTTCAATGTGGTTAGCAACCGGATAATGATGGGAGAGATTCAGACTGTAGAAGATTAGGTAGAATGAGGGAGGGTACATACTTTGTGTTTGAGAATGTTTGTAAATGCTTTAGGATTATCTAGCAACAGAAGCAGTACTATTTAATCTGCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E722617" ref_strand="+" ref_description="SGN-E722617 [FC17DC06]">
      <seq>gggcgattggcggccaatcggccgaattagtcaaagcttgcgtcaggtacaacctgatcaggaagtattacctgctataccatctggtccttcgctaggagattttgttgtttggaagggtgagtctgcaagttctgctactattcctgttccagcatggtccactgactctgggaaaccctcaaaacccacatccttgcgggacatcctaaaggaacaagaaaagaaggttgcttctggacagcagcatataccagtgccaacacagaaatctgtgccaaatccacctgcgagagtaggtggtccatcatggtctagttcatcgcccgccaaggctgcgtctcctattcagattaactcacaagctggcgcttattcaaaaaataaagtggaggacgatttgttttggggcccaatagatcatcccaagcaagagtcaaagcaatctgaatatcctcagcttggaagtcaaggcagttggggaagcaagaccacaccagtgaaaggaagtcctggtggttcattgagcaggcaaaagtctgtcagcagtaagcctgcaaaacgtctactatcctcatctcctgcgtcaggtcactcgtccctgaaagggaagaaggatgctttgacaaagcattcagaagcaatggatttcagagaatggtgtgagaatgaatgtgataggctcattggtacaagagataccagctttctggacttctgtttcaagcaatccaagtcagaggctgaaatgcttctgatagagaatcttggctcttatgatcctgatcatgaattcattgacaagttcctcaattacaaagactttttgcctgcggatgtttttgacatggccttccagggtcgtaatgatcgtaaggtcactggtgcaagtgccaaaaatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="57609" stop="55725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57307" g_stop="56893" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="444" r_length="414" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56892" i_stop="56804" i_length="89">
            <donor d_prob="0.138" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56803" g_stop="56610" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="638" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56609" i_stop="56506" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56505" g_stop="56446" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="698" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56445" i_stop="56232" i_length="214">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56231" g_stop="56025" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="905" r_length="207" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E722617" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57307" e_stop="56893"/>
          <exon e_start="56803" e_stop="56610"/>
          <exon e_start="56505" e_stop="56446"/>
          <exon e_start="56231" e_stop="56025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAGTCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTTCATCATGGTCTAGTTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTCAAAGCAGTACGGCAATTTACTTCCTCATCATCTCTTCTCCTCTCTCTCTCTTTCTCTTGATAAATTCCTCCTTTTTGTTGGTTGTAATCCTGCAGATCTGAATATCCTCAGCTTGGAAGTCAAGGCAGTTGGGGAAGCAAGACCACACCAGTGAAAGGAAGTCCTGGTGGTTCATTGAGCAGGCAAAAGTCTGTCAGCAGTAAGCCTGCAGAACGTCTACTATCCTCATCTCCTGCGTCAGGTCACTCGTCCCTGAAAGGGAAGAAGGATGCTTTGACAAAGCATTCAGGTAACCATTTGTTTTTTAAGAACTAATCAAAGATCTAAAGTAAACATTGTTTCTCAGCGGAAAAAGAAAAAAAAATATTAACACAATTTTCTTCTTTGTTTCAGAAGCAATGGATTTCAGAGAATGGTGTGAGAATGAATGTGATAGGCTCATTGGTACAAGAGGTATTTTTTAGAATTATCTCTCTTCTGGAATACTTTATTGCTCACTTGATTTAGATCTCTCTTCTGGAATACTTTATCACCCCATATATTTTGAATTGTGTCGGTAGTTGAGGAATTTCTCAAGTCCTACACTTTGACTGATGCTGAGAGTATCTACGTAGGACTATGCTGACAGTTTGTCTGATGTTTTCCCAAATTATTTTTGTTCATTCAGATACCAGCTTTCTGGACTTCTGTTTCAAGCAATCCAAGTCAGAGGCTGAAATGCTTCTGATAGAGAATCTTGGCTCTTATGATCCTGATCATGAATTCATTGACAAGTTCCTCAACTACAAAGACTTTTTGCCTGCGGATGTTTTTGACATGGCCTTCCAGGGTCGTAATGATCGTAAGGTCACTGGTGCAAGTGCCAAAAATGTGA</genome_strand>
        <mrna_strand>TC-AAAGCTTGCGTCAGGTACAACCTGATCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAGTCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACTGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTGCTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTCCATCATGGTCTAGTTCATCGCCCGCCAAGGCTGCGTCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTCAAAGCA.........................................................................................ATCTGAATATCCTCAGCTTGGAAGTCAAGGCAGTTGGGGAAGCAAGACCACACCAGTGAAAGGAAGTCCTGGTGGTTCATTGAGCAGGCAAAAGTCTGTCAGCAGTAAGCCTGCAAAACGTCTACTATCCTCATCTCCTGCGTCAGGTCACTCGTCCCTGAAAGGGAAGAAGGATGCTTTGACAAAGCATTCAG........................................................................................................AAGCAATGGATTTCAGAGAATGGTGTGAGAATGAATGTGATAGGCTCATTGGTACAAGAG......................................................................................................................................................................................................................ATACCAGCTTTCTGGACTTCTGTTTCAAGCAATCCAAGTCAGAGGCTGAAATGCTTCTGATAGAGAATCTTGGCTCTTATGATCCTGATCATGAATTCATTGACAAGTTCCTCAATTACAAAGACTTTTTGCCTGCGGATGTTTTTGACATGGCCTTCCAGGGTCGTAATGATCGTAAGGTCACTGGTGCAAGTGCCAAAAATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E211369" ref_strand="+" ref_description="SGN-E211369 [cLEC-67-A19]">
      <seq>tctggtccttcgctaggagattttgttgtttggaagggtgaatctgcaagttctgctactattcctgttccagcatggtccaccgactctgggaaaccctcaaaacccacatccttgcgggacatcctaaaggaacaagaaaagaaggttacttctggacagcagcatataccagtgccaacacagaaatctgtgccaaatccacctgcgagagtaggtggttcatcatggtctagttcatcgcccgccaaggctgcatctcctattcagattaactcacaagctggcgcttattcaaaaaataaagtggaggacgatttgttttggggcccaatagatcatcccaagcaagagtcaaagcaatctgaatatcctcagcttggaagtcaaggcagttggggaagcaagaccacaccagtgaaaggaagtcctggtggttcattgagcaggcaaaagtctgtcagcagtaagcctgcagaacgtctactatcctcatctcctgcgttaggtcactcgtccctgaaagggaagaaggatgctttgacaaagcattcagaagcaatggatttcagagaatggtgtgagaatgaatgtgataggctcattggtacaagagataccagctttctggacttctgtttcaagcaatccaagtcagaagctgaaatgcttctgatagagaatcttggctcttatgatcctgatcatgaattcattgacaagttcctcaactacaaagactttttgcctgcggatgtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="57554" stop="55785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57254" g_stop="56893" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56892" i_stop="56804" i_length="89">
            <donor d_prob="0.138" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56803" g_stop="56610" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="556" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56609" i_stop="56506" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56505" g_stop="56446" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="616" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56445" i_stop="56232" i_length="214">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56231" g_stop="56085" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="763" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E211369" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57254" e_stop="56893"/>
          <exon e_start="56803" e_stop="56610"/>
          <exon e_start="56505" e_stop="56446"/>
          <exon e_start="56231" e_stop="56085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAGTCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTTCATCATGGTCTAGTTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTCAAAGCAGTACGGCAATTTACTTCCTCATCATCTCTTCTCCTCTCTCTCTCTTTCTCTTGATAAATTCCTCCTTTTTGTTGGTTGTAATCCTGCAGATCTGAATATCCTCAGCTTGGAAGTCAAGGCAGTTGGGGAAGCAAGACCACACCAGTGAAAGGAAGTCCTGGTGGTTCATTGAGCAGGCAAAAGTCTGTCAGCAGTAAGCCTGCAGAACGTCTACTATCCTCATCTCCTGCGTCAGGTCACTCGTCCCTGAAAGGGAAGAAGGATGCTTTGACAAAGCATTCAGGTAACCATTTGTTTTTTAAGAACTAATCAAAGATCTAAAGTAAACATTGTTTCTCAGCGGAAAAAGAAAAAAAAATATTAACACAATTTTCTTCTTTGTTTCAGAAGCAATGGATTTCAGAGAATGGTGTGAGAATGAATGTGATAGGCTCATTGGTACAAGAGGTATTTTTTAGAATTATCTCTCTTCTGGAATACTTTATTGCTCACTTGATTTAGATCTCTCTTCTGGAATACTTTATCACCCCATATATTTTGAATTGTGTCGGTAGTTGAGGAATTTCTCAAGTCCTACACTTTGACTGATGCTGAGAGTATCTACGTAGGACTATGCTGACAGTTTGTCTGATGTTTTCCCAAATTATTTTTGTTCATTCAGATACCAGCTTTCTGGACTTCTGTTTCAAGCAATCCAAGTCAGAGGCTGAAATGCTTCTGATAGAGAATCTTGGCTCTTATGATCCTGATCATGAATTCATTGACAAGTTCCTCAACTACAAAGACTTTTTGCCTGCGGATGTTTTTG</genome_strand>
        <mrna_strand>TCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAATCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTTCATCATGGTCTAGTTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTCAAAGCA.........................................................................................ATCTGAATATCCTCAGCTTGGAAGTCAAGGCAGTTGGGGAAGCAAGACCACACCAGTGAAAGGAAGTCCTGGTGGTTCATTGAGCAGGCAAAAGTCTGTCAGCAGTAAGCCTGCAGAACGTCTACTATCCTCATCTCCTGCGTTAGGTCACTCGTCCCTGAAAGGGAAGAAGGATGCTTTGACAAAGCATTCAG........................................................................................................AAGCAATGGATTTCAGAGAATGGTGTGAGAATGAATGTGATAGGCTCATTGGTACAAGAG......................................................................................................................................................................................................................ATACCAGCTTTCTGGACTTCTGTTTCAAGCAATCCAAGTCAGAAGCTGAAATGCTTCTGATAGAGAATCTTGGCTCTTATGATCCTGATCATGAATTCATTGACAAGTTCCTCAACTACAAAGACTTTTTGCCTGCGGATGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E214888" ref_strand="+" ref_description="SGN-E214888 [cLEC-78-I8]">
      <seq>gccgcaaaagatctgcaaaatctaagggagcaggagcaaaggcctcaatgcccacagctgcttccgaggtgtctgttgcatcaagtcctattgacaaagtcaaaagcttgcgtcaggtacaacctgaccaggaagtattacctgctataccatctggtccttcgctaggagattttgttgtttggaagggtgaatctgcaagttctgctactattcctgttccagcatggtccaccgactctgggaaaccctcaaaacccacatccttgcgggacatcctaaaggaacaagaaaagaaggttacttctggacagcagcatataccagtgccaacacagaaatctgtgccaaatccacctgcgagagtaggtggttcatcatggtctagttcatcgcccgccaaggctgcatctcctattcagattaactcacaagctggcgcttattcaaaaaataaagtggaggacgatttgttttggggcccaatagatcatcccaagcaagagtcaaagcaatctgaatatcctcagcttggaagtcaaggcagttggggaagcaagaccacaccagtgaaaggaagtcctggtggttcattgagcaggcaaaagtctgtcagcagtaagcctgcagaacgtctactatcctcatctcctgcgttaggtcactcgtccctgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="57706" stop="56340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57406" g_stop="56893" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56892" i_stop="56804" i_length="89">
            <donor d_prob="0.138" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56803" g_stop="56640" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="678" r_length="164" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E214888" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57406" e_stop="56893"/>
          <exon e_start="56803" e_stop="56640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAGTCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTTCATCATGGTCTAGTTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTCAAAGCAGTACGGCAATTTACTTCCTCATCATCTCTTCTCCTCTCTCTCTCTTTCTCTTGATAAATTCCTCCTTTTTGTTGGTTGTAATCCTGCAGATCTGAATATCCTCAGCTTGGAAGTCAAGGCAGTTGGGGAAGCAAGACCACACCAGTGAAAGGAAGTCCTGGTGGTTCATTGAGCAGGCAAAAGTCTGTCAGCAGTAAGCCTGCAGAACGTCTACTATCCTCATCTCCTGCGTCAGGTCACTCGTCCCTGAAAG</genome_strand>
        <mrna_strand>GCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAATCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTTCATCATGGTCTAGTTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTCAAAGCA.........................................................................................ATCTGAATATCCTCAGCTTGGAAGTCAAGGCAGTTGGGGAAGCAAGACCACACCAGTGAAAGGAAGTCCTGGTGGTTCATTGAGCAGGCAAAAGTCTGTCAGCAGTAAGCCTGCAGAACGTCTACTATCCTCATCTCCTGCGTTAGGTCACTCGTCCCTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E370143" ref_strand="+" ref_description="SGN-E370143 [TUS-28-A2]">
      <seq>gagaacactttggccaagtcaagcgatagagagagagattttcctgatatgacatctgttcaaccttccgtgtctgtcaatgatgataacaactttattgaagctaaagaaactaaaaagagccgcaaaagatctgcaaaatctaagggagcaggagcaaaggcctcaatgcccacagctgcttccgaggtgtctgttgcatcaagtcctattgacaaagtcaaaagcttgcgtcaggtacaacctgaccaggaagtattacctgctataccatctggtccttcgctaggagattttgttgtttggaagggtgaatctgcaagttctgctactattcctgttccagcatggtccaccgactctgggaaaccctcaaaacccacatccttgcgggacatcctaaaggaacaagaaaagaaggttacttctggacagcagcatataccagtgccaacacagaaatctgtgccaaatccacctgcgagagtaggtggttcatcatggtctagttcatcgcccgccaaggctgcatctcctattcagattaactcacaagctggcgcttatttaaaaaataaagtggaggacgatttgttttggggcccaatagatcatcccaagcaagagtaaaagcaatcttgaatatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="57827" stop="56591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57527" g_stop="56893" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56892" i_stop="56804" i_length="89">
            <donor d_prob="0.138" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56803" g_stop="56792" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="648" r_length="13" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E370143" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57527" e_stop="56893"/>
          <exon e_start="56803" e_stop="56792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACACTTTGGCCAAGTCAAGCGATAGAGAGAGAGATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATGACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAGTCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTTCATCATGGTCTAGTTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTCAAAGCAGTACGGCAATTTACTTCCTCATCATCTCTTCTCCTCTCTCTCTCTTTCTCTTGATAAATTCCTCCTTTTTGTTGGTTGTAATCCTGCAGATC-TGAATATCC</genome_strand>
        <mrna_strand>GAGAACACTTTGGCCAAGTCAAGCGATAGAGAGAGAGATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATAACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAATCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTTCATCATGGTCTAGTTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTTAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTAAAAGCA.........................................................................................ATCTTGAATATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E250702" ref_strand="+" ref_description="SGN-E250702 [cLEG-7-M1]">
      <seq>aaaagtcaattgcatgacgtactggctgagaacactttggccaagtcaagcgatagagagagagattttcctgatatgacatctgttcaaccttccgtgtctgtcaatgatgataacaactttattgaagctaaagaaactaaaaagagccgcaaaagatctgcaaaatctaagggagcaggagcaaaggcctcaatgcccacagctgcttccgaggtgtctgttgcatcaagtcctattgacaaagtcaaaagcttgcgtcaggtacaacctgaccaggaagtattacctgctataccatctggtccttcgctaggagattttgttgtttggaagggtgaatctgcaagttctgctactattcctgttccagcatggtccaccgactctgggaaaccctcaaaacccacatccttgcgggacatcctaaaggaacaagaaaagaaggttacttctggacagcagcatataccantgccaacacanaaatctgtgccaaatccacctgcnaaagtangtggntcatcatggtctaattcatcgcccgccaaggctgcatctcctattcagattaactcacaagctggcgcttattcaaaaaataaagtggaggacgatttgttttggggcccaataaatcatcccaagcaagagttcaagcaatctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="57854" stop="56585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57554" g_stop="56893" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56892" i_stop="56804" i_length="89">
            <donor d_prob="0.138" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56803" g_stop="56797" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="669" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E250702" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57554" e_stop="56893"/>
          <exon e_start="56803" e_stop="56797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTCAATTGCATGACGTACTGGCTGAGAACACTTTGGCCAAGTCAAGCGATAGAGAGAGAGATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATGACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAGTCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTTCATCATGGTCTAGTTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTCAAAGCAGTACGGCAATTTACTTCCTCATCATCTCTTCTCCTCTCTCTCTCTTTCTCTTGATAAATTCCTCCTTTTTGTTGGTTGTAATCCTGCAGATCTGAA</genome_strand>
        <mrna_strand>AAAAGTCAATTGCATGACGTACTGGCTGAGAACACTTTGGCCAAGTCAAGCGATAGAGAGAGAGATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATAACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAATCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCANTGCCAACACANAAATCTGTGCCAAATCCACCTGCNAAAGTANGTGGNTCATCATGGTCTAATTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAAATCATCCCAAGCAAGAGTTCAAGCA.........................................................................................ATCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E378540" ref_strand="+" ref_description="SGN-E378540 [TUS-28-A2]">
      <seq>caagtcaagcgatagagagagagattttcctgatatgacatctgttcaaccttccgtgtctgtcaatgatgataacaactttattgaagctaaagaaactaaaaagagccgcaaaagatctgcaaaatctaagggagcaggagcaaaggcctcaatgcccacagctgcttccgaggtgtctgttgcatcaagtcctattgacaaagtcaaaagcttgcgtcaggtacaacctgaccaggaagtattacctgctataccatctggtccttcgctaggagattttgttgtttggaagggtgaatctgcaagttctgctactattcctgttccagcatggtccaccgactctggggaaccctcaaacccacatccttgcgggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="57813" stop="56831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57513" g_stop="57131" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E378540" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57513" e_stop="57131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCAAGCGATAGAGAGAGAGATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATGACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAGTCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACA</genome_strand>
        <mrna_strand>CAAGTCAAGCGATAGAGAGAGAGATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATAACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAATCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGGAACCCTC-AAACCCACATCCTTGCGGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E214147" ref_strand="+" ref_description="SGN-E214147 [cLEC-80-P10]">
      <seq>gtaggtccaggaagaagagagagcagacccgaagttgctattgctgatgttgtggatgaatatccagggcaaaacccaccaatttcacagtccaacacccaagtacagtctggacagcgagcttggaaacctgctcctggtttcaagccgaagtctttgttggaaattcaagaggaagagcagaggagagcacaagcagaaataactactacagaggtcgccacatctctgagctccttaagtgtgtctactccatgggctggatttgttactaattcagatcataaattagttagagatactcagcaagatgctgccagcactgatttgaatatgaataactcagatgtttctctcgaccagaagactaagaaaagtcaattgcatgacgtactggctgagaacactttggccaagtcaagcgatagagagagagattttcctgatatgacatctgttcaaccttccgtgtctgtcaatgatgataacaactttattgaagctaaagaaactaaaaagagccgcaaaagatctgcaaaatctaagggagcaggagcaaaggcctcaatgcccacagctgcttccgaggtgtctgttgcatcaagtcctattgacaaagtcaaaagcttgcgtcaggtacaacctgaccaggaagtattacctgctataccatctggtccttcgctaggagaatttgttgtttgggaagggtgatctgcaagttctgctactattcctgttccagcatggtccaccgactctgggaaaccctcaaaaccacatccttgcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="58226" stop="56834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57926" g_stop="57134" g_length="793"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="792" r_length="792" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E214147" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57926" e_stop="57134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGTCCAGGAAGAAGAGAGAGCAGACCCGAAGTTGCTATTGCTGATGTTGTGGATGAATATCCAGGGCAAAACCCACCAATTTCACAGTCCAACACCCAAGTACAGTCTGGACAGCGAGCTTGGAAACCTGCTCCTGGTTTCAAGCCGAAGTCATTGTTGGAAATTCAAGAGGAAGAGCAGAGGAGAGCACAAGCAGAAATAACTACTACAGAGGTCGCCACATCTCTGAGCTCCTTAAGTGTGTCTACTCCATGGGCTGGATTTGTTACTAATTCAGATCATAAATTAGTTAGAGATACTCAGCAAGATGCTGCCAGCACTGATTTGAATATGAATAACTCAGATGTTTCTCTCGACCAGAAGACTAAGAAAAGTCAATTGCATGACGTACTGGCTGAGAACACTTTGGCCAAGTCAAGCGATAGAGAGAGAGATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATGACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTT-GGAAGGGTGAGTCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGG</genome_strand>
        <mrna_strand>GTAGGTCCAGGAAGAAGAGAGAGCAGACCCGAAGTTGCTATTGCTGATGTTGTGGATGAATATCCAGGGCAAAACCCACCAATTTCACAGTCCAACACCCAAGTACAGTCTGGACAGCGAGCTTGGAAACCTGCTCCTGGTTTCAAGCCGAAGTCTTTGTTGGAAATTCAAGAGGAAGAGCAGAGGAGAGCACAAGCAGAAATAACTACTACAGAGGTCGCCACATCTCTGAGCTCCTTAAGTGTGTCTACTCCATGGGCTGGATTTGTTACTAATTCAGATCATAAATTAGTTAGAGATACTCAGCAAGATGCTGCCAGCACTGATTTGAATATGAATAACTCAGATGTTTCTCTCGACCAGAAGACTAAGAAAAGTCAATTGCATGACGTACTGGCTGAGAACACTTTGGCCAAGTCAAGCGATAGAGAGAGAGATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATAACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGAATTTGTTGTTTGGGAAGGGTGA-TCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAA-CCACATCCTTGCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E395682" ref_strand="-" ref_description="SGN-E395682 [TUS-17-I20]">
      <seq>tgcagtcagtcggggcattctcggagaaagctgaaagtgtttcctctcctatacgatacagtcggttaaaaatgcttgatgtgtacagagggacggacatgcagtcctgtagcaacttttcggatgtgattgtgcaagttccttcacttacacaagatgaacctctggagcctctcgcattatgtgcacccagtcaggaggaattggctatcttgaagggaattgacaagggggatgttctgagtagtggagctccacagactactaaagatggaacattagctcgaaactcaactgaacatactcaaccaaggcgcggcaaactaggtagcagagaagatttatcttttgatgattcaagagaagaaagtaccgacaatgccaaaggtggttatttgaatcacccagaaggttctttcttcgaaaagttacattcttatgggtccagttctaaatctgagactaagcagagtttagagagattttctgatcccaaattaggtgctgtaggtatatgtgtggatatctgtctcttgatgtactatgcagttcatcagggtgcagtaacaaaaacatatcttaaatgttactaaggtttggatgtcctgttaaaattaaaagaaccaaatacataagctagtctgttgcttatacatatctttcaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="61703" stop="60212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61403" g_stop="61198" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61197" i_stop="61096" i_length="102">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61095" g_stop="60975" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="327" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60974" i_stop="60858" i_length="117">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60857" g_stop="60509" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="676" r_length="349" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E395682" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395682" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61403" e_stop="61198"/>
          <exon e_start="61095" e_stop="60975"/>
          <exon e_start="60857" e_stop="60509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTCAGTCGGGGCATTCTCGGAGAAAGCTGAAAGTGTTTCCTCTCCTATACGATACAGTCGGTTAAAAATGCTTGATGTGTACAGAGGGACGGACATGCAGTCCTGTAGCAACTTTTCGGATGTGATTGTGCAAGTTCCTTCACTTACACAAGATGAACCTCTGGAGCCTCTCGCATTATGTGCACCCAGTCAGGAGGAATTGGTAACTTCCAGAGAGACTTGAAACTGATATTACTTGGATTAATTGGATTTTGATCCGATGTTAATTTGTTTAAATGAAGTAACTGCTCAAGTTTATGTTTAGGCTATCTTGAAGGGAATTGACAAGGGGGATGTTCTGAGTAGTGGAGCTCCACAGACTACTAAAGATGGAACATTAGCTCGAAACTCAACTGAACATACTCAACCAAGGCGCGGCAAACTAGGTACTTCTAATTCTTAGATCGGTTTAGGGGATTTCTGAATCTAGATTATATATAGGCTCTCAAATTAGTATGTTTTGTGCTATAATTTTGATTGCCATCATTTCTTCAATTGTTCAGGTAGCAGAGAAGATTTATCTTTTGATGATTCAAGAGAAGAAAGTACCGACAATGCCAAAGGTGGTTATTTGAATCACCCAGAAGGTTCTTTCTTCGAAAAGTTACATTCTTATGGGTCCAGTTCTAAATCTGAGACTAAGCAGAGTTTAGAGAGATTTTCTGATCCCAAATTAGGTGCTGTAGGTATATGTGTGGATATCTGTCTCTTGATGTACTATGCAGTTCATCAGGGTGCAGTAACAAAAACATATCTTAAATGTTACTAAGGTTTGGATGTCCTGTTAAAATTTCAAGAACCAAATACATAAGCTAGTCTGTTGCTTATACATATCTTTCAATAAGCAGAGTT</genome_strand>
        <mrna_strand>TGCAGTCAGTCGGGGCATTCTCGGAGAAAGCTGAAAGTGTTTCCTCTCCTATACGATACAGTCGGTTAAAAATGCTTGATGTGTACAGAGGGACGGACATGCAGTCCTGTAGCAACTTTTCGGATGTGATTGTGCAAGTTCCTTCACTTACACAAGATGAACCTCTGGAGCCTCTCGCATTATGTGCACCCAGTCAGGAGGAATTG......................................................................................................GCTATCTTGAAGGGAATTGACAAGGGGGATGTTCTGAGTAGTGGAGCTCCACAGACTACTAAAGATGGAACATTAGCTCGAAACTCAACTGAACATACTCAACCAAGGCGCGGCAAACTAG.....................................................................................................................GTAGCAGAGAAGATTTATCTTTTGATGATTCAAGAGAAGAAAGTACCGACAATGCCAAAGGTGGTTATTTGAATCACCCAGAAGGTTCTTTCTTCGAAAAGTTACATTCTTATGGGTCCAGTTCTAAATCTGAGACTAAGCAGAGTTTAGAGAGATTTTCTGATCCCAAATTAGGTGCTGTAGGTATATGTGTGGATATCTGTCTCTTGATGTACTATGCAGTTCATCAGGGTGCAGTAACAAAAACATATCTTAAATGTTACTAAGGTTTGGATGTCCTGTTAAAATTAAAAGAACCAAATACATAAGCTAGTCTGTTGCTTATACATATCTTTCAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E379887" ref_strand="-" ref_description="SGN-E379887 [TUS-3-C22]">
      <seq>ccggggacgtgaagatggtgctacccctactttttctcttggtaggggtcgtgctgtctctggagggagccccatgattaaaggctctcttcatgtgcagtcagtcggggcattctcggagaaagctgaaagtgtttcctctcctatacgatacagtcggttaaaaatgcttgatgtgtacagagggacggacatgcagtcctgtagcaacttttcggatgtgattgtgcaagttccttcacttacacaagatgaacctctggagcctctcgcattatgtgcacccagtcaggaggaattggctatcttgaagggaattgacaagggggatgttctgagtagtggagctccacagactactaaagatggaacattagctcgaaactcaactgaacatactcaaccaaggcgcggcaaactaggtagcagagaagatttatcttttgatgattcaagagaagaaagtaccgacaatgccaaaggtggttatttgaatcacccagaaggttctttcttcgaaaagttacattcttatgggtccagttctaaatctgagactaagcagagtttagagagattttctgatcccaaattaggtgctgtaggtatatgtgtggatatctgtctcttgatgtactatgcagttcatcagggtgcagtaacaaaaacatatctcaaatgttacgaaggtttggatgtcctgatcccgttcaaggatcaaatacataagctagtactgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="61798" stop="60236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61498" g_stop="61198" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61197" i_stop="61096" i_length="102">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61095" g_stop="60975" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="422" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60974" i_stop="60858" i_length="117">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60857" g_stop="60536" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="743" r_length="321" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E379887" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379887" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61498" e_stop="61198"/>
          <exon e_start="61095" e_stop="60975"/>
          <exon e_start="60857" e_stop="60536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGGGACGTGAAGATGGTGCTACCCCTACTTTTTCTCTTGGTAGGGGTCGTGCTGTCTCTGGAGGGAGCCCCATGATTAAAGGCTCTCTTCATGTGCAGTCAGTCGGGGCATTCTCGGAGAAAGCTGAAAGTGTTTCCTCTCCTATACGATACAGTCGGTTAAAAATGCTTGATGTGTACAGAGGGACGGACATGCAGTCCTGTAGCAACTTTTCGGATGTGATTGTGCAAGTTCCTTCACTTACACAAGATGAACCTCTGGAGCCTCTCGCATTATGTGCACCCAGTCAGGAGGAATTGGTAACTTCCAGAGAGACTTGAAACTGATATTACTTGGATTAATTGGATTTTGATCCGATGTTAATTTGTTTAAATGAAGTAACTGCTCAAGTTTATGTTTAGGCTATCTTGAAGGGAATTGACAAGGGGGATGTTCTGAGTAGTGGAGCTCCACAGACTACTAAAGATGGAACATTAGCTCGAAACTCAACTGAACATACTCAACCAAGGCGCGGCAAACTAGGTACTTCTAATTCTTAGATCGGTTTAGGGGATTTCTGAATCTAGATTATATATAGGCTCTCAAATTAGTATGTTTTGTGCTATAATTTTGATTGCCATCATTTCTTCAATTGTTCAGGTAGCAGAGAAGATTTATCTTTTGATGATTCAAGAGAAGAAAGTACCGACAATGCCAAAGGTGGTTATTTGAATCACCCAGAAGGTTCTTTCTTCGAAAAGTTACATTCTTATGGGTCCAGTTCTAAATCTGAGACTAAGCAGAGTTTAGAGAGATTTTCTGATCCCAAATTAGGTGCTGTAGGTATATGTGTGGATATCTGTCTCTTGATGTACTATGCAGTTCATCAGGGTGCAGTAACAAAAACATATCTTAAATGTTACTAAGGTTTGGATGTCCTGTTAAAATTTCAAGAACCAAATACATAAGCTAGTCTGTTGCT</genome_strand>
        <mrna_strand>CCGGGGACGTGAAGATGGTGCTACCCCTACTTTTTCTCTTGGTAGGGGTCGTGCTGTCTCTGGAGGGAGCCCCATGATTAAAGGCTCTCTTCATGTGCAGTCAGTCGGGGCATTCTCGGAGAAAGCTGAAAGTGTTTCCTCTCCTATACGATACAGTCGGTTAAAAATGCTTGATGTGTACAGAGGGACGGACATGCAGTCCTGTAGCAACTTTTCGGATGTGATTGTGCAAGTTCCTTCACTTACACAAGATGAACCTCTGGAGCCTCTCGCATTATGTGCACCCAGTCAGGAGGAATTG......................................................................................................GCTATCTTGAAGGGAATTGACAAGGGGGATGTTCTGAGTAGTGGAGCTCCACAGACTACTAAAGATGGAACATTAGCTCGAAACTCAACTGAACATACTCAACCAAGGCGCGGCAAACTAG.....................................................................................................................GTAGCAGAGAAGATTTATCTTTTGATGATTCAAGAGAAGAAAGTACCGACAATGCCAAAGGTGGTTATTTGAATCACCCAGAAGGTTCTTTCTTCGAAAAGTTACATTCTTATGGGTCCAGTTCTAAATCTGAGACTAAGCAGAGTTTAGAGAGATTTTCTGATCCCAAATTAGGTGCTGTAGGTATATGTGTGGATATCTGTCTCTTGATGTACTATGCAGTTCATCAGGGTGCAGTAACAAAAACATATCTCAAATGTTACGAAGGTTTGGATGTCCTGAT-CCCGTTCAAGGATCAAATACATAAGCTAGTACTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E379507" ref_strand="+" ref_description="SGN-E379507 [TUS-3-C22]">
      <seq>ttcttctccccttcttccctcctctcacaaagcagcataaattagggttttctttgagcgcttattcactttttctccttccgatcatcagccatgggtgacaaaacgcaatttgattctcgccatagtcagatctccaaagatgtgcaagcacccaacgattccattccgctttcaccgcagtggctcctgccaaaaccaggggaaagtaaggctgggatggtcaccggggacaaccatctcaatgcacatccggggtatcctattcgttcagagttagcaaaatttcctgggatgagtgaagatatgcataatcaaaagaagaaagatgtgtttaggccatctgtgctcgatatggaatcaggtcgacgggatcgctggcgtgatgaagaaagggacaccaattctgctgttcgaagggatcgctggagggagggagataaggagattggtgatggccgcaaggtggagcgctggtcggactcctctggcagacatcatggagaagtacgacgtggtccaggtgaaagatggaccgattctggaaatagggatagcaatcacgatcagcgtcgagagagcaaatggaacacgcgctggggacctgatgagaaggaggcagatgctgtgcgtgagaaatgggagcaccctagcaaagatgctgaaatgcatcttgagaaggggtcgccaggtcttgcctatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="65770" stop="61325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65470" g_stop="65329" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65328" i_stop="62378" i_length="2951">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62377" g_stop="62289" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="231" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62288" i_stop="62101" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62100" g_stop="61625" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="704" r_length="473" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E379507" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65470" e_stop="65329"/>
          <exon e_start="62377" e_stop="62289"/>
          <exon e_start="62100" e_stop="61625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCCCCTTCTTCCCTCCTCTCACAAAGCAGCATAAATTAGGGTTTTCTTTGAGCGCTTATTCACTTTTTCTCCTTCCGATCATCAGCCATGGGTGACAAAACGCAATTTGATTCTCGCCATAGTCAGATCTCCAAAGGTTAAATTTTTTTCAACTTTTTTTCACCTTCGAAATTCTTCAGTAGATGCATTCATTTTTTTTAGCTTTGTGTTTATCTAATCGTAACGAGATGAATGTATGTTTTCGTTGTGAAAATGAAAGATTGTAGCTTTATGTGTGTTCTACTGTTGCCGCCACTGTGGGTTTAGGGTTTCTATATGGTTGATTGAGCTTCGACCTGCTGAACAAACTGTTCAGGAGCATGAAAAATGATGATGTTCGAGTTTTGTGACGGTAGGAGTTATCATTCGGTGATAGAGTTGTGGTTTTTCTGTATGAAGGGATAAATAATGATACAGGGAGATTTGTTTTTTGTGTGTGTTCTGTTTTCTATTGATATTTTTGTACTCAAAGAAACTAGCTTTGCAGTGGGAAATGCTGTTGTTTGAGTTATCTTCTCATTCGGTTATATAGTTTTTTTTTTTGTTTTTGGTTTTGTTTTTGTATGTTTGATGAATAGTACGAGATTTTTGTGTCTGCTTAGTTTTTCCTATCAATACTTTCAATCAAAGAAATAACTTTGCTTGTTTAATTTTTCTTACAGTAGGAAATATCACTCGTTTGTGAAGATGTGATTTTTTTGCATGTTTGACAACTCGGTTATGAAGATGTAATTATTTTGTACATGTTTGATGAATAATACTTTAGGTAGCTTTTTTGTTTGTCTGCTTTTTCTTTTCCCTATCTATATTTATACTAAAGAAACTGATTTTGCAGTAGGAGTGTCGATGTTTGTATGTTTGATGCGTAATACTATAGGGAGATTTATACTCGAAGAAATTGACTTTGCAGTCGGAATGCTGTTGTTTGAGTTTTCTTACTAAAGAAAATATCACTTGGTTAGAAAGTTTTAATTTTTCATATGATGATAATACTGCCGGGAGGTTTTTTGTGCGTCTGTTGTGTTCCTATCGACACTTTTTAACTCAAAAAGATTGATTTTACGGTAGGATTGCTGTTGTTTGAGTTTTCTCACTAAAGAAAATATTCATCGGTTGAAGTTGTGATTTTTTTTGTATGTTTGATGAATAATACTATAGGAAGGTCCTCTTGTGTGTTTGTTTTGTTCGTATCAATGTTTCTATACTCGAAGAAATTGACTTTGCATTAGGAATGCTGTTGTTTGAGTTTTCTTATTATAGAAAGTATCACTTGGCTATAAATTTGTGGTTTTTATGTTTGATGAATAATACTACTTGGAGATTTGTTTTTTTGTGTTTGTAATTTTCCTTCAGCCTAAGCGTTGTCCCTACCACTACTTGTATCCTTGATGAAATTGACCTTTGTGGTGGTAGCTGGTAATGTTGCTTAACAATTGGCTAGTCTCGTGTTTGAGTGTTTTAATGATGTTATTAGTTTTGGTGAGTTGCTCTGTATTGTCCTGTCTTAGGATCGACCGTAGTGTTCGGAACCTGGGAGAGTATGTCTGCCCGTTTATCCTTCTATACTTAAATACCAGGTCTAGTCTGCATTGTGCGAGGATCAAACCTGTGACCTAAGTCATAGATTTGACAACCTTAAAAATTGAACCAAGCCATGAAGGCGAAGACTCCCCTTTCTCTTTTATTACATTTGATCCTCTTATAGCCTCACCTAAGAACAATGTACATGAAAATATACATTGAACATTGTGGAATCATCTCTGAGGACTTACTCATCTTGTTCTACATGTGTGATACCTTTAGCCTTTGTTGAAAGTGATGATTCTGATCTTGTATCACCATATATCCATCTTAACATATGTATTCTTACAGTTATATATCTTACTGCTATTATAGCCTTAGATACTCAATAGTCACTTCCACTATAACATTCCTGGTCTGGAAACCACTTTGCAGCCACTGTTGTTAAAGGCTTGCTCAAAACACATTTAAGCCCTGAAACAAACTTGTGTGCTTTTCTTCACTTAGTTGGTACTTTAGTGCAGTCATCAAGGGGCTTATTCGGTTACATCTTCACGAATGGGCTCAATCTATAAGAGCACAATACTAGACAGTATTATGTATATACTTACATGATACTTCTATTTGCTAAGAACCACACTTTATTTGCACTTTGCTCTTGAACTCCAATATATTTTGGTGATTTTTGCTTTTGACTACTTGTTTGCCTTTCATGATGTCTGTTAATCGACCAATTTAGTGAGTCAAAATTCAAATGTTTTACCGTCAAAGGATAAATTAATGAAGTATGTGAGCAACTAACTACTTAATAATGATAGACATCAGCAATGCGTACAACCATGTTAGTCAAAGCTTCATGTCTTTTGCCAGCTATGGTGCTGATGGTTTGATTCAGAGATGAAATCAGGGGAAATGAGTTTTTGCGTGATTTAATTGGCCTTACTATAAAGGAGAACAGAGCATGTGATTTAGAAGTAAGTGAAGCTGAAATATCTAAGAACAAGCATATTTAAATGCTGAAATAAGCATTTGAAGCCCCTGATTTCAGATGTTATCTAGGAGTATCTTTTGTAGTTAGGAGAGATAAGAAGTGACTATTACTATGTGTAAGCAAAGGTGTCCTGTGTTATTGAAAGGCAAGTTTAATTCATATAAATCTTCTGAATTTTCTGATAAGTTTTCATTGAGCGCCACTTAAATTCAAGGTGGAATTTATTTCTTTAATGTATCATTATTTTTCTCTGTTTTACATGCCTTTGATCTGTTACAAGCCTTCCAAACTTCTTGCTCCTGTTAATAATGTTGATCAACCCTTGGAATTTCTACGGATGGGGAACAGGTTTCGTATAATAACTTATAGGGATTATATGGAACCTCCTATTTTGCTTATTCACATAAGACAGTAAGCAGCAGGGTTTAATTTCTTACCTTATGAAATGGGTGTTTTTATTCCAATATGTGTTTGCTGTAGTGCAAGATTATGTGTTCATATGTAAGTTATTTTTGTTGGCTTTTTGATACATGTAGATGTGCAAGGACCCAACGATTCCATTCCGCTTTCACCGCAGTGGCTCCTGCCAAAACCAGGGGAAAGTAAGGCTGGGATGGTCACCGGGGTATGTTTATTATTGCTTTGGATTTCCTTTTTAATTAAACCCTGTACCATTCTCACTTTTGAGAAACATTTTGGTATTGGGTTAGAAGCAGTTGAGGTTTTCTGCTTAAATTTGTGTAGCGGTTCTTAATAAATTGTTAATTAATAAAATAGCCTGATGTTTGGTCATCTATTGGTGTTTAAATGCAGGACAACCATCTCAATGCACATCCGGGGTATCCTATTCGTTCAGAGTTAGCAAAATTTCCTGGGATGAGTGAAGATATGCATGATAATCAAAAGAAGAAAGATGTGTTTAGGCCATCTGTGCTCGATATGGAATCAGGTCGACGGGATCGCTGGCGTGATGAAGAAAGGGACACCAATTCTGCTGTTCGAAGGGATCGCTGGAGGGAGGGAGATAAGGAGATTGGTGATGGCCGCAAGGTGGAGCGCTGGTCGGACTCCTCTGGCAGACATCATGGAGAAGTACGACGTGGTCCAGGTGAAAGATGGACCGATTCTGGAAATAGGGATAGCAATCACGATCAGCGTCGAGAGAGCAAATGGAACACGCGCTGGGGACCTGATGAGAAGGAGGCAGATGCTGTGCGTGAGAAATGGAGCAACCCTAGCAAAGATGCTGAAATGCATCTTGAGAAGGGGTCGCCAGGTCTTGCCTATCA</genome_strand>
        <mrna_strand>TTCTTCTCCCCTTCTTCCCTCCTCTCACAAAGCAGCATAAATTAGGGTTTTCTTTGAGCGCTTATTCACTTTTTCTCCTTCCGATCATCAGCCATGGGTGACAAAACGCAATTTGATTCTCGCCATAGTCAGATCTCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCAAGCACCCAACGATTCCATTCCGCTTTCACCGCAGTGGCTCCTGCCAAAACCAGGGGAAAGTAAGGCTGGGATGGTCACCGGG............................................................................................................................................................................................GACAACCATCTCAATGCACATCCGGGGTATCCTATTCGTTCAGAGTTAGCAAAATTTCCTGGGATGAGTGAAGATATGC---ATAATCAAAAGAAGAAAGATGTGTTTAGGCCATCTGTGCTCGATATGGAATCAGGTCGACGGGATCGCTGGCGTGATGAAGAAAGGGACACCAATTCTGCTGTTCGAAGGGATCGCTGGAGGGAGGGAGATAAGGAGATTGGTGATGGCCGCAAGGTGGAGCGCTGGTCGGACTCCTCTGGCAGACATCATGGAGAAGTACGACGTGGTCCAGGTGAAAGATGGACCGATTCTGGAAATAGGGATAGCAATCACGATCAGCGTCGAGAGAGCAAATGGAACACGCGCTGGGGACCTGATGAGAAGGAGGCAGATGCTGTGCGTGAGAAATGGGAGCACCCTAGCAAAGATGCTGAAATGCATCTTGAGAAGGGGTCGCCAGGTCTTGCCTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E395683" ref_strand="+" ref_description="SGN-E395683 [TUS-17-I20]">
      <seq>cttcttctccccttcttccctcctctcacaaagcagcataaattagggttttctttgagcgcttattcactttttctccttccgatcatcagccatgggtgacaaaacgcaatttgattctcgccatagtcagatctccaaagatgtgcaagcacccaacgattccattccgctttcaccgcagtggctcctgccaaaaccaggggaaagtaaggctgggatggtcaccggggacaaccatctcaatgcacatccggggtatcctattcgttcagagttagcaaaatttcctgggatgagtgaagatatgcataatcaaaagaagaaagatgtgtttaggccatctgtgctcgatatggaatcaggtcgacgggatcgctggcgtgatgaagaaagggacaccaattctgctgttcgaagggatcgctggagggagggagataaggagattggtgatggccgcaaggtggagcgctggtcggactcctctggcagacatcatggagaagtacgacgtggtccaggtgaaagatggaccgattctggaaatagggatagcaatcacgatcagcgtcgagagagcaaatggaacacgcgctggggacctgatgagaaggaggcagatgctgtgcgtgagaaatggagcaaccctagcaaagatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="65771" stop="61365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65471" g_stop="65329" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65328" i_stop="62378" i_length="2951">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62377" g_stop="62289" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="232" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62288" i_stop="62101" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62100" g_stop="61665" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="665" r_length="433" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E395683" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65471" e_stop="65329"/>
          <exon e_start="62377" e_stop="62289"/>
          <exon e_start="62100" e_stop="61665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTCCCCTTCTTCCCTCCTCTCACAAAGCAGCATAAATTAGGGTTTTCTTTGAGCGCTTATTCACTTTTTCTCCTTCCGATCATCAGCCATGGGTGACAAAACGCAATTTGATTCTCGCCATAGTCAGATCTCCAAAGGTTAAATTTTTTTCAACTTTTTTTCACCTTCGAAATTCTTCAGTAGATGCATTCATTTTTTTTAGCTTTGTGTTTATCTAATCGTAACGAGATGAATGTATGTTTTCGTTGTGAAAATGAAAGATTGTAGCTTTATGTGTGTTCTACTGTTGCCGCCACTGTGGGTTTAGGGTTTCTATATGGTTGATTGAGCTTCGACCTGCTGAACAAACTGTTCAGGAGCATGAAAAATGATGATGTTCGAGTTTTGTGACGGTAGGAGTTATCATTCGGTGATAGAGTTGTGGTTTTTCTGTATGAAGGGATAAATAATGATACAGGGAGATTTGTTTTTTGTGTGTGTTCTGTTTTCTATTGATATTTTTGTACTCAAAGAAACTAGCTTTGCAGTGGGAAATGCTGTTGTTTGAGTTATCTTCTCATTCGGTTATATAGTTTTTTTTTTTGTTTTTGGTTTTGTTTTTGTATGTTTGATGAATAGTACGAGATTTTTGTGTCTGCTTAGTTTTTCCTATCAATACTTTCAATCAAAGAAATAACTTTGCTTGTTTAATTTTTCTTACAGTAGGAAATATCACTCGTTTGTGAAGATGTGATTTTTTTGCATGTTTGACAACTCGGTTATGAAGATGTAATTATTTTGTACATGTTTGATGAATAATACTTTAGGTAGCTTTTTTGTTTGTCTGCTTTTTCTTTTCCCTATCTATATTTATACTAAAGAAACTGATTTTGCAGTAGGAGTGTCGATGTTTGTATGTTTGATGCGTAATACTATAGGGAGATTTATACTCGAAGAAATTGACTTTGCAGTCGGAATGCTGTTGTTTGAGTTTTCTTACTAAAGAAAATATCACTTGGTTAGAAAGTTTTAATTTTTCATATGATGATAATACTGCCGGGAGGTTTTTTGTGCGTCTGTTGTGTTCCTATCGACACTTTTTAACTCAAAAAGATTGATTTTACGGTAGGATTGCTGTTGTTTGAGTTTTCTCACTAAAGAAAATATTCATCGGTTGAAGTTGTGATTTTTTTTGTATGTTTGATGAATAATACTATAGGAAGGTCCTCTTGTGTGTTTGTTTTGTTCGTATCAATGTTTCTATACTCGAAGAAATTGACTTTGCATTAGGAATGCTGTTGTTTGAGTTTTCTTATTATAGAAAGTATCACTTGGCTATAAATTTGTGGTTTTTATGTTTGATGAATAATACTACTTGGAGATTTGTTTTTTTGTGTTTGTAATTTTCCTTCAGCCTAAGCGTTGTCCCTACCACTACTTGTATCCTTGATGAAATTGACCTTTGTGGTGGTAGCTGGTAATGTTGCTTAACAATTGGCTAGTCTCGTGTTTGAGTGTTTTAATGATGTTATTAGTTTTGGTGAGTTGCTCTGTATTGTCCTGTCTTAGGATCGACCGTAGTGTTCGGAACCTGGGAGAGTATGTCTGCCCGTTTATCCTTCTATACTTAAATACCAGGTCTAGTCTGCATTGTGCGAGGATCAAACCTGTGACCTAAGTCATAGATTTGACAACCTTAAAAATTGAACCAAGCCATGAAGGCGAAGACTCCCCTTTCTCTTTTATTACATTTGATCCTCTTATAGCCTCACCTAAGAACAATGTACATGAAAATATACATTGAACATTGTGGAATCATCTCTGAGGACTTACTCATCTTGTTCTACATGTGTGATACCTTTAGCCTTTGTTGAAAGTGATGATTCTGATCTTGTATCACCATATATCCATCTTAACATATGTATTCTTACAGTTATATATCTTACTGCTATTATAGCCTTAGATACTCAATAGTCACTTCCACTATAACATTCCTGGTCTGGAAACCACTTTGCAGCCACTGTTGTTAAAGGCTTGCTCAAAACACATTTAAGCCCTGAAACAAACTTGTGTGCTTTTCTTCACTTAGTTGGTACTTTAGTGCAGTCATCAAGGGGCTTATTCGGTTACATCTTCACGAATGGGCTCAATCTATAAGAGCACAATACTAGACAGTATTATGTATATACTTACATGATACTTCTATTTGCTAAGAACCACACTTTATTTGCACTTTGCTCTTGAACTCCAATATATTTTGGTGATTTTTGCTTTTGACTACTTGTTTGCCTTTCATGATGTCTGTTAATCGACCAATTTAGTGAGTCAAAATTCAAATGTTTTACCGTCAAAGGATAAATTAATGAAGTATGTGAGCAACTAACTACTTAATAATGATAGACATCAGCAATGCGTACAACCATGTTAGTCAAAGCTTCATGTCTTTTGCCAGCTATGGTGCTGATGGTTTGATTCAGAGATGAAATCAGGGGAAATGAGTTTTTGCGTGATTTAATTGGCCTTACTATAAAGGAGAACAGAGCATGTGATTTAGAAGTAAGTGAAGCTGAAATATCTAAGAACAAGCATATTTAAATGCTGAAATAAGCATTTGAAGCCCCTGATTTCAGATGTTATCTAGGAGTATCTTTTGTAGTTAGGAGAGATAAGAAGTGACTATTACTATGTGTAAGCAAAGGTGTCCTGTGTTATTGAAAGGCAAGTTTAATTCATATAAATCTTCTGAATTTTCTGATAAGTTTTCATTGAGCGCCACTTAAATTCAAGGTGGAATTTATTTCTTTAATGTATCATTATTTTTCTCTGTTTTACATGCCTTTGATCTGTTACAAGCCTTCCAAACTTCTTGCTCCTGTTAATAATGTTGATCAACCCTTGGAATTTCTACGGATGGGGAACAGGTTTCGTATAATAACTTATAGGGATTATATGGAACCTCCTATTTTGCTTATTCACATAAGACAGTAAGCAGCAGGGTTTAATTTCTTACCTTATGAAATGGGTGTTTTTATTCCAATATGTGTTTGCTGTAGTGCAAGATTATGTGTTCATATGTAAGTTATTTTTGTTGGCTTTTTGATACATGTAGATGTGCAAGGACCCAACGATTCCATTCCGCTTTCACCGCAGTGGCTCCTGCCAAAACCAGGGGAAAGTAAGGCTGGGATGGTCACCGGGGTATGTTTATTATTGCTTTGGATTTCCTTTTTAATTAAACCCTGTACCATTCTCACTTTTGAGAAACATTTTGGTATTGGGTTAGAAGCAGTTGAGGTTTTCTGCTTAAATTTGTGTAGCGGTTCTTAATAAATTGTTAATTAATAAAATAGCCTGATGTTTGGTCATCTATTGGTGTTTAAATGCAGGACAACCATCTCAATGCACATCCGGGGTATCCTATTCGTTCAGAGTTAGCAAAATTTCCTGGGATGAGTGAAGATATGCATGATAATCAAAAGAAGAAAGATGTGTTTAGGCCATCTGTGCTCGATATGGAATCAGGTCGACGGGATCGCTGGCGTGATGAAGAAAGGGACACCAATTCTGCTGTTCGAAGGGATCGCTGGAGGGAGGGAGATAAGGAGATTGGTGATGGCCGCAAGGTGGAGCGCTGGTCGGACTCCTCTGGCAGACATCATGGAGAAGTACGACGTGGTCCAGGTGAAAGATGGACCGATTCTGGAAATAGGGATAGCAATCACGATCAGCGTCGAGAGAGCAAATGGAACACGCGCTGGGGACCTGATGAGAAGGAGGCAGATGCTGTGCGTGAGAAATGGAGCAACCCTAGCAAAGATGCTG</genome_strand>
        <mrna_strand>CTTCTTCTCCCCTTCTTCCCTCCTCTCACAAAGCAGCATAAATTAGGGTTTTCTTTGAGCGCTTATTCACTTTTTCTCCTTCCGATCATCAGCCATGGGTGACAAAACGCAATTTGATTCTCGCCATAGTCAGATCTCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCAAGCACCCAACGATTCCATTCCGCTTTCACCGCAGTGGCTCCTGCCAAAACCAGGGGAAAGTAAGGCTGGGATGGTCACCGGG............................................................................................................................................................................................GACAACCATCTCAATGCACATCCGGGGTATCCTATTCGTTCAGAGTTAGCAAAATTTCCTGGGATGAGTGAAGATATGC---ATAATCAAAAGAAGAAAGATGTGTTTAGGCCATCTGTGCTCGATATGGAATCAGGTCGACGGGATCGCTGGCGTGATGAAGAAAGGGACACCAATTCTGCTGTTCGAAGGGATCGCTGGAGGGAGGGAGATAAGGAGATTGGTGATGGCCGCAAGGTGGAGCGCTGGTCGGACTCCTCTGGCAGACATCATGGAGAAGTACGACGTGGTCCAGGTGAAAGATGGACCGATTCTGGAAATAGGGATAGCAATCACGATCAGCGTCGAGAGAGCAAATGGAACACGCGCTGGGGACCTGATGAGAAGGAGGCAGATGCTGTGCGTGAGAAATGGAGCAACCCTAGCAAAGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E210316" ref_strand="+" ref_description="SGN-E210316 [cLEC-35-K12]">
      <seq>ttcttctccccttcttccctcctctcacaaagcagcataaattagggttttctttgagcgcttattcactttttctccttccgatcatcagccatgggtgacaaaacgcaatttgattctcgccatagtcagatctccaaagatgtgcaagcacccaacgattccattccgctttcaccgcagtggctcctgccaaaaccaggggaaagtaaggctgggatggtcaccggggacaaccatctcaatgcacatccggggtatcctattcgttcagagttagcaaaatttcctgggatgagtgaagatatgcataatcaaaagaagaaagatgtgtttaggccatctgtgctcgatatggaatcaggtcgacgggatcgctggcgtgatgaagaaagggacaccaattctgctgttcgaagggatcgctggagggagggagataacgagattggtgatggccgcaaggtggagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="65770" stop="61555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65470" g_stop="65329" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65328" i_stop="62378" i_length="2951">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62377" g_stop="62289" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="231" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62288" i_stop="62101" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62100" g_stop="61855" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="474" r_length="243" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E210316" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65470" e_stop="65329"/>
          <exon e_start="62377" e_stop="62289"/>
          <exon e_start="62100" e_stop="61855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCCCCTTCTTCCCTCCTCTCACAAAGCAGCATAAATTAGGGTTTTCTTTGAGCGCTTATTCACTTTTTCTCCTTCCGATCATCAGCCATGGGTGACAAAACGCAATTTGATTCTCGCCATAGTCAGATCTCCAAAGGTTAAATTTTTTTCAACTTTTTTTCACCTTCGAAATTCTTCAGTAGATGCATTCATTTTTTTTAGCTTTGTGTTTATCTAATCGTAACGAGATGAATGTATGTTTTCGTTGTGAAAATGAAAGATTGTAGCTTTATGTGTGTTCTACTGTTGCCGCCACTGTGGGTTTAGGGTTTCTATATGGTTGATTGAGCTTCGACCTGCTGAACAAACTGTTCAGGAGCATGAAAAATGATGATGTTCGAGTTTTGTGACGGTAGGAGTTATCATTCGGTGATAGAGTTGTGGTTTTTCTGTATGAAGGGATAAATAATGATACAGGGAGATTTGTTTTTTGTGTGTGTTCTGTTTTCTATTGATATTTTTGTACTCAAAGAAACTAGCTTTGCAGTGGGAAATGCTGTTGTTTGAGTTATCTTCTCATTCGGTTATATAGTTTTTTTTTTTGTTTTTGGTTTTGTTTTTGTATGTTTGATGAATAGTACGAGATTTTTGTGTCTGCTTAGTTTTTCCTATCAATACTTTCAATCAAAGAAATAACTTTGCTTGTTTAATTTTTCTTACAGTAGGAAATATCACTCGTTTGTGAAGATGTGATTTTTTTGCATGTTTGACAACTCGGTTATGAAGATGTAATTATTTTGTACATGTTTGATGAATAATACTTTAGGTAGCTTTTTTGTTTGTCTGCTTTTTCTTTTCCCTATCTATATTTATACTAAAGAAACTGATTTTGCAGTAGGAGTGTCGATGTTTGTATGTTTGATGCGTAATACTATAGGGAGATTTATACTCGAAGAAATTGACTTTGCAGTCGGAATGCTGTTGTTTGAGTTTTCTTACTAAAGAAAATATCACTTGGTTAGAAAGTTTTAATTTTTCATATGATGATAATACTGCCGGGAGGTTTTTTGTGCGTCTGTTGTGTTCCTATCGACACTTTTTAACTCAAAAAGATTGATTTTACGGTAGGATTGCTGTTGTTTGAGTTTTCTCACTAAAGAAAATATTCATCGGTTGAAGTTGTGATTTTTTTTGTATGTTTGATGAATAATACTATAGGAAGGTCCTCTTGTGTGTTTGTTTTGTTCGTATCAATGTTTCTATACTCGAAGAAATTGACTTTGCATTAGGAATGCTGTTGTTTGAGTTTTCTTATTATAGAAAGTATCACTTGGCTATAAATTTGTGGTTTTTATGTTTGATGAATAATACTACTTGGAGATTTGTTTTTTTGTGTTTGTAATTTTCCTTCAGCCTAAGCGTTGTCCCTACCACTACTTGTATCCTTGATGAAATTGACCTTTGTGGTGGTAGCTGGTAATGTTGCTTAACAATTGGCTAGTCTCGTGTTTGAGTGTTTTAATGATGTTATTAGTTTTGGTGAGTTGCTCTGTATTGTCCTGTCTTAGGATCGACCGTAGTGTTCGGAACCTGGGAGAGTATGTCTGCCCGTTTATCCTTCTATACTTAAATACCAGGTCTAGTCTGCATTGTGCGAGGATCAAACCTGTGACCTAAGTCATAGATTTGACAACCTTAAAAATTGAACCAAGCCATGAAGGCGAAGACTCCCCTTTCTCTTTTATTACATTTGATCCTCTTATAGCCTCACCTAAGAACAATGTACATGAAAATATACATTGAACATTGTGGAATCATCTCTGAGGACTTACTCATCTTGTTCTACATGTGTGATACCTTTAGCCTTTGTTGAAAGTGATGATTCTGATCTTGTATCACCATATATCCATCTTAACATATGTATTCTTACAGTTATATATCTTACTGCTATTATAGCCTTAGATACTCAATAGTCACTTCCACTATAACATTCCTGGTCTGGAAACCACTTTGCAGCCACTGTTGTTAAAGGCTTGCTCAAAACACATTTAAGCCCTGAAACAAACTTGTGTGCTTTTCTTCACTTAGTTGGTACTTTAGTGCAGTCATCAAGGGGCTTATTCGGTTACATCTTCACGAATGGGCTCAATCTATAAGAGCACAATACTAGACAGTATTATGTATATACTTACATGATACTTCTATTTGCTAAGAACCACACTTTATTTGCACTTTGCTCTTGAACTCCAATATATTTTGGTGATTTTTGCTTTTGACTACTTGTTTGCCTTTCATGATGTCTGTTAATCGACCAATTTAGTGAGTCAAAATTCAAATGTTTTACCGTCAAAGGATAAATTAATGAAGTATGTGAGCAACTAACTACTTAATAATGATAGACATCAGCAATGCGTACAACCATGTTAGTCAAAGCTTCATGTCTTTTGCCAGCTATGGTGCTGATGGTTTGATTCAGAGATGAAATCAGGGGAAATGAGTTTTTGCGTGATTTAATTGGCCTTACTATAAAGGAGAACAGAGCATGTGATTTAGAAGTAAGTGAAGCTGAAATATCTAAGAACAAGCATATTTAAATGCTGAAATAAGCATTTGAAGCCCCTGATTTCAGATGTTATCTAGGAGTATCTTTTGTAGTTAGGAGAGATAAGAAGTGACTATTACTATGTGTAAGCAAAGGTGTCCTGTGTTATTGAAAGGCAAGTTTAATTCATATAAATCTTCTGAATTTTCTGATAAGTTTTCATTGAGCGCCACTTAAATTCAAGGTGGAATTTATTTCTTTAATGTATCATTATTTTTCTCTGTTTTACATGCCTTTGATCTGTTACAAGCCTTCCAAACTTCTTGCTCCTGTTAATAATGTTGATCAACCCTTGGAATTTCTACGGATGGGGAACAGGTTTCGTATAATAACTTATAGGGATTATATGGAACCTCCTATTTTGCTTATTCACATAAGACAGTAAGCAGCAGGGTTTAATTTCTTACCTTATGAAATGGGTGTTTTTATTCCAATATGTGTTTGCTGTAGTGCAAGATTATGTGTTCATATGTAAGTTATTTTTGTTGGCTTTTTGATACATGTAGATGTGCAAGGACCCAACGATTCCATTCCGCTTTCACCGCAGTGGCTCCTGCCAAAACCAGGGGAAAGTAAGGCTGGGATGGTCACCGGGGTATGTTTATTATTGCTTTGGATTTCCTTTTTAATTAAACCCTGTACCATTCTCACTTTTGAGAAACATTTTGGTATTGGGTTAGAAGCAGTTGAGGTTTTCTGCTTAAATTTGTGTAGCGGTTCTTAATAAATTGTTAATTAATAAAATAGCCTGATGTTTGGTCATCTATTGGTGTTTAAATGCAGGACAACCATCTCAATGCACATCCGGGGTATCCTATTCGTTCAGAGTTAGCAAAATTTCCTGGGATGAGTGAAGATATGCATGATAATCAAAAGAAGAAAGATGTGTTTAGGCCATCTGTGCTCGATATGGAATCAGGTCGACGGGATCGCTGGCGTGATGAAGAAAGGGACACCAATTCTGCTGTTCGAAGGGATCGCTGGAGGGAGGGAGATAAGGAGATTGGTGATGGCCGCAAGGTGGAGCGC</genome_strand>
        <mrna_strand>TTCTTCTCCCCTTCTTCCCTCCTCTCACAAAGCAGCATAAATTAGGGTTTTCTTTGAGCGCTTATTCACTTTTTCTCCTTCCGATCATCAGCCATGGGTGACAAAACGCAATTTGATTCTCGCCATAGTCAGATCTCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCAAGCACCCAACGATTCCATTCCGCTTTCACCGCAGTGGCTCCTGCCAAAACCAGGGGAAAGTAAGGCTGGGATGGTCACCGGG............................................................................................................................................................................................GACAACCATCTCAATGCACATCCGGGGTATCCTATTCGTTCAGAGTTAGCAAAATTTCCTGGGATGAGTGAAGATATGC---ATAATCAAAAGAAGAAAGATGTGTTTAGGCCATCTGTGCTCGATATGGAATCAGGTCGACGGGATCGCTGGCGTGATGAAGAAAGGGACACCAATTCTGCTGTTCGAAGGGATCGCTGGAGGGAGGGAGATAACGAGATTGGTGATGGCCGCAAGGTGGAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E298262" ref_strand="+" ref_description="SGN-E298262 [cLEW-18-K4]">
      <seq>aaattttaaacaattttattgttttgtaatctaatttactaattatggcagaggaaaagaagttcacaaattttgcagtccaaaatggatcagttgatatttgtgaagtcataaagagttatataccattcttgaatgtgagaagattatcagaaaatgccactttgcccaaaagaatgttccctcattctgcagcttatgatcttttcagtgcaagggacgttatggtgccagcacgaggcaaggcaaaagttgccactgacttaagcatagacttacctccaggaacctatggtcgtgtcgctgcaagatcaagtttgtcttggcatcgttccattgatgttggaggtggtgtggttgatttaaacaaaaatcctgttttcgtgatactgttcaaccattctgatgttgatttcgaggtgaaagttggcgataacatagcacagctagtcattgagctccatgctatacctgagattgttgaggtttatcaataattataatgtggggtttgaatttgctggagcagctttatgtctgtgtatgttatgcagttgttatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="67318" stop="69763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67618" g_stop="67828" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67829" i_stop="69016" i_length="1188">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69017" g_stop="69108" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="303" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69109" i_stop="69202" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69203" g_stop="69463" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="564" r_length="261" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E298262" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67618" e_stop="67828"/>
          <exon e_start="69017" e_stop="69108"/>
          <exon e_start="69203" e_stop="69463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTAAACAATTTTATTGTTTGGTAATATAATTTACTAATTATGGCAGAGGAAAAGAAGTTCACAAATTTTGCAGTCCAAAATGGATCAGTTGATATTTGTGAAGTCATAAAGAGTTATATACCATTCTTGAATGTGAGAAGATTATCAGAAAATGCCACTTTGCCCAAAAGAATGTTCCCTCATTCTGCAGCTTATGATCTTTTCAGGTAAAAATTACTAGAATTAGTTTCTTGACTATGATTGTTGATCTAATAATAGCAAAATCGATTCGATATACTAAGCTCCTGCTATGGCTAGGATCCACAGAAGGATCGGACCATAAGGGTCTATTGTACTATATGCAGTATTACCCAGTATATATTGAGTATGTAATGTTTTGACGATACAACATGAGTTGTGGTGCGGTGCTGAGACTGGTTCACTCTTAATTAGAGGTATTGAGTTCAAATTCTGTATATGAAAAAAAAAATTGTGATCATCACCCATATGGATCCTACAATCTAGATGTACCAGATTTAGTTGGAGCTCCAATACAAACACCGAACACGTGAACCAAAAAAATGTCTTGATAATGATAAATAAAATGTTTTTGTGCTAAGTTGTGTCTAATATTGGTAAAGTTTTTTTGCTTGATTTCGGAAAATGGTCAGTAAGTGTTGAGAGTTTAATTGTCTAACAAATTATGTTGGTTACGGCAACTGTAATTTTAAATTACTAATTTTGGTGGACTTTACGTGTGACCAACAAATGGTTATTGCTGAAGCAATTCTGATATGGTGTAGACATCAGGTGCAGAGAAGTATTTTACCAACACGAAATGGTTTGTATTTCTATTCATTATTTATAGAGTAGGATCGAACACGAATAGATTATTGAAAAGATGGATGCCTAATTTCGATACATAAAGGAGTCTCTATTAGTGCTAGTTAGATGAACACCGTGATTGATAGGAAGTACTGAGGCTAACTCTTGCCTTCCCCTGATCCGCAATGCGGTCCAGGGGAACATGGGGAGAGATCTATTATGGTTTTTTTTTTCCAGTAACTGATATAAGTAATTGTCATTCTGTCATTTTCTACTCTTGACAGAAAAAAAGATGAGAAAATGGCTTTATATGCCCTTTCATATATAAATATGTTAAAGTTTGGACACTGCTATATTAAAAGTATTATCAGGCACAGTGATTGCTATCATGGATAAGATTTTTATGGTCTCAAACTGTAGCAGAACTGTTTGATAACAAACGCGGATCTAGTAGAAAAGATAGGGATTCAGTCAAGCACGAGCTCAGTAGTTTTGGCTTAAACCTTGTATATGTATTAAAAACTCGTTAAATAAGTACAAATCATTGAGTTAACTATTGTTTGTTTTCGTGATTGTTAATTTGTTCATAGTGCAAGGGACGTTATGGTGCCAGCACGAGGCAAGGCAAAAGTTGCCACTGACTTAAGCATAGACTTACCTCCAGGAACCTATGGTCGTGTCGGTATGCTGCAATACTCTTATCTGAATGTATACATTCTTGTTTTACAATGACATAATCTGTCTTTAGAGATGCTGCTTTTGTTTCATATGTGTAGCTGCAAGATCAAGTTTGTCTTGGCATCGTTCCATTGATGTTGGAGGTGGTGTGGTTGATTTAGACAAAAATCCTGTTTTCGTGATACTGTTCAACCATTCTGATGTTGATTTCGAGGTGAAAGTTGGCGATAACATAGCACAGCTAGTCATTGAGCTCCATGCTATACCTGAGATTGTTGAGGTTTATCAATAATTATAATGTGGGGTTTGAATTTGCTGGAGCAGCTTTATGTCTGTGTATGTTATGCAGTTGTTATGTT</genome_strand>
        <mrna_strand>AAATTTTAAACAATTTTATTGTTTTGTAATCTAATTTACTAATTATGGCAGAGGAAAAGAAGTTCACAAATTTTGCAGTCCAAAATGGATCAGTTGATATTTGTGAAGTCATAAAGAGTTATATACCATTCTTGAATGTGAGAAGATTATCAGAAAATGCCACTTTGCCCAAAAGAATGTTCCCTCATTCTGCAGCTTATGATCTTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGGACGTTATGGTGCCAGCACGAGGCAAGGCAAAAGTTGCCACTGACTTAAGCATAGACTTACCTCCAGGAACCTATGGTCGTGTCG..............................................................................................CTGCAAGATCAAGTTTGTCTTGGCATCGTTCCATTGATGTTGGAGGTGGTGTGGTTGATTTAAACAAAAATCCTGTTTTCGTGATACTGTTCAACCATTCTGATGTTGATTTCGAGGTGAAAGTTGGCGATAACATAGCACAGCTAGTCATTGAGCTCCATGCTATACCTGAGATTGTTGAGGTTTATCAATAATTATAATGTGGGGTTTGAATTTGCTGGAGCAGCTTTATGTCTGTGTATGTTATGCAGTTGTTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E704178" ref_strand="+" ref_description="SGN-E704178 [FA23CC06]">
      <seq>gtcttctggaagtttcgacccgaatattggggatttgttgaaaggattgttggagttcaataaagctactggttctcctttcgccattaatccttatccgtttttcgcttatcagagtgatcctagacctgatactttagctttttgcttgtttcaacctaatgctggtcgagttgatgctggcaccaagatcaagtacaccaacatgttcgatgctcaggtggatgcaataagagcagcgcttaactctatgggattcaaggaagtagagattgtgattgcggaaacagggtggccttataagggagacagcaatgaagttggtccaagtattgagaatgcaaaggcttacaatggcaatttgattgctcacttgaggtcaatggttggtactcctttgatgcctggcaaatcagtagatacctatctctttgccatatatgatgaggatctcaaaccaggaccaacttctgagcgatccttcggaatttttaagcctgatttaaccatgagttatgatattggactttctaaagccaacaaccaggttccaacaccaaaaactccggtgtctccctcgccaaatgcatccccaaaagctcctgtgtctctctcaccaaatccagcaccaaaagctccggtgactcccacactggttccaacgccaaacaccacagtgactcccccgtcaccaaagacagagaaaagtgtcaaggcaggtgtatcagattctcaatcgcaagcaaatatcaacgtanggatgcttgttttgagccaaatactgtggtaccccatgctgcatatgcgataaatctctttacccaaattcagtaaagaatggtttgactgacagcgtctctctcatcaacgtgtcctagtaagctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="75987" stop="73295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75687" g_stop="75468" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75467" i_stop="74662" i_length="806">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74661" g_stop="74335" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="547" r_length="327" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74334" i_stop="73937" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73936" g_stop="73595" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="889" r_length="342" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E704178" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75687" e_stop="75468"/>
          <exon e_start="74661" e_stop="74335"/>
          <exon e_start="73936" e_stop="73595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCTGGAAGTTTCGACCCGAATATTGGGGATTTGTTGAAAGGATTGTTGGAGTTCAATAAAGCTACTGGTTCTCCTTTCGCCATTAATCCTTATCCGTTTTTCGCTTATCAGAGTGATCCTAGACCTGATACTTTAGCTTTTTGCTTGTTTCAACCTAATGCTGGTCGAGTTGATGCTGGCACCAAGATCAAGTACACCAACATGTTCGATGCTCAGGTAAAGAAAATTTATACTATGCAATTTGCAAGTTATTATACGATCTTCATGTTACTATATCAGGCTTGATATGCTCTGTTTGTTACACTTTCGTCGAGAGTGAAACAGTTTGGGTTAAGTTATGCGTACATTCTACCCTGCTTGTAGGATTACACTGAATATGTTTTTGTGTATCATGTTTGATATGTTGACCTGTTCTACATCAATATAACATAACAGCATATGCAACAGTATAAAGATTGAATTTTTCCCGAAAGACAACTGAGATAAACATGCTTGTTTTATATGAGAAACTTGCAAATGCTTGGAATCTATGTGTTATCTTTGATAAAAATTAAACATAATGAACGAAAATGATTTATATAAATGATACCAACTAGTGTATTCTGAAAGTTTCATTTCTTGTAGCTACATTTCCATTAGATTGGTTATTTTAGTAACTTGATAGTGTAAGAATAAATGTTTGATTTAGATAAACACTATTCTAGAGAACTCCTCTTTATCCTCTTAGATCTAATTTGTAGAGAAAAATGGATATAAATTATTCATATAACTAGTTTAGGATTGAAAATAATTGATTGACTGGCTGTATATCCTCTTAGATCTAATTCTTAGTAAACTTTACATGATGTTTGGAAATAGAAAGTTTACTTTCAAAGAATGAATGGATGAGTTTATAAGATGAACTCAATCTTGATTTCTTAAAACTCTTAGAATTCGAGTGATGTCATTCATCTTTACATGTAGGGGGTATTTTGTAGGTGTTTTTTGAGTTTGAGTAACATAATTAAGTTGGATGTATGCAGGTGGATGCAATAAGAGCAGCGCTTAACGCTATGGGATTCAAGGAAGTAGAGATTGTGATTGCGGAAACAGGGTGGCCTTATAAGGGAGACAGCAATGAAGTTGGTCCAAGTATTGAGAATGCAAAGGCTTACAATGGCAATTTGATTGCTCACTTGAGGTCAATGGTTGGTACTCCTTTGATGCCTGGCAAATCAGTAGATACCTATCTCTTTGCCATATATGATGAGGATCTCAAACCAGGACCAACTTCTGAGCGATCCTTCGGACTTTTTAAGCCTGATTTAACCATGAGTTATGATATTGGACTTTCTAAAGCCAACAACCAGGTAAGAGAATCACTACAAGAACTCAATTACCTTGTTATTTAATATGCTTGTAAAATATGCATTGCACTGGTCTGTAGTAGGTGTGAAGTTAAATGCGGACAAGGTAGACCTAAAATCACATGAAATGTAATTGACTATAAGCCATGCCAATTAGTTGCGGATTAAGTTTCATATTAATATGTTATTCTAGGTCCAACGTTTTCTAGGAATCTATTTGTCAATATAAGATATAAAGAACTTCTAGTAATTTAATTTTGGACTGAAAGGCCACCTTATAGAGCGACATAGATAGTGAAGATTTATGTAGCTACCTTGTTTTCAATAGACGCGTAACTGTTATAATTTCTTGGAAATTTCGTGATTATTAAGGTCTGAGATGAGTTTTTGTGTTTTCGAAGGTTCCAACACCAAAAACTCCGGTGTCTCCCTCGCCAAATGCATCCCCAAAAGCTCCTGTGTCTCTCTCACCAAATCCAGCACCAAAAGCTCCGGTGACTCCCACACTGGTTCCAACGCCAAACACCACAGTGACTCCCCCGTCACCAAAGACAGAGAAAAGTGTCAAGGCAGGTGTATCAGATTCTCAATCGCAAGCAAATATCAACGTAGGGATGCTTGTTTTGAGCCAAATACTGTGGTACCCCATGCTGCATATGCGATAAATCTCTTTACCAAAATTCAGTAAAGAATGTTTGAACTGACAGCATCTCTCTCATCAACGTGTCCTAGTAAGCTGCTGA</genome_strand>
        <mrna_strand>GTCTTCTGGAAGTTTCGACCCGAATATTGGGGATTTGTTGAAAGGATTGTTGGAGTTCAATAAAGCTACTGGTTCTCCTTTCGCCATTAATCCTTATCCGTTTTTCGCTTATCAGAGTGATCCTAGACCTGATACTTTAGCTTTTTGCTTGTTTCAACCTAATGCTGGTCGAGTTGATGCTGGCACCAAGATCAAGTACACCAACATGTTCGATGCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGCAATAAGAGCAGCGCTTAACTCTATGGGATTCAAGGAAGTAGAGATTGTGATTGCGGAAACAGGGTGGCCTTATAAGGGAGACAGCAATGAAGTTGGTCCAAGTATTGAGAATGCAAAGGCTTACAATGGCAATTTGATTGCTCACTTGAGGTCAATGGTTGGTACTCCTTTGATGCCTGGCAAATCAGTAGATACCTATCTCTTTGCCATATATGATGAGGATCTCAAACCAGGACCAACTTCTGAGCGATCCTTCGGAATTTTTAAGCCTGATTTAACCATGAGTTATGATATTGGACTTTCTAAAGCCAACAACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAACACCAAAAACTCCGGTGTCTCCCTCGCCAAATGCATCCCCAAAAGCTCCTGTGTCTCTCTCACCAAATCCAGCACCAAAAGCTCCGGTGACTCCCACACTGGTTCCAACGCCAAACACCACAGTGACTCCCCCGTCACCAAAGACAGAGAAAAGTGTCAAGGCAGGTGTATCAGATTCTCAATCGCAAGCAAATATCAACGTANGGATGCTTGTTTTGAGCCAAATACTGTGGTACCCCATGCTGCATATGCGATAAATCTCTTTACCCAAATTCAGTAAAGAATGGTTTGACTGACAGCGTCTCTCTCATCAACGTGTCCTAGTAAGCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E727686" ref_strand="+" ref_description="SGN-E727686 [LA15BG08]">
      <seq>gaagaatctaaacacctttgaagtttcttttgtatgctctgtttttgtactttgtacttcgaaaagctatctctatttatacttcttctccatcaattatttttctccatcaaattaacatccatggctaatttgcttcacaattcatccttcttccttcttctctgtctcttgcatttcgtactcgtcgcgaaatcgcagtcatttattggtataaattatggccaagttgcggataatttaccggcaccggaggcaacagccaagttactacaatcaacttcaattcaaaaagtccggttatacggatccgacccggcaattatcaaagctttagcaaataccggtatcggaatcatgatcggagtagccaacggtgatattccggcgatggcatcagacccgaactttgctaaaggatggctgagttcaaacgtgcttccgttttatccggcgagtgaaattatcgtaattaacgtcggaaatgaggttatgtcttcaaatgatcagaatctgatgacgaatttgttgccggcgatgcaaaatttacaaaaagccctaaatgatgtttcaattggagggaaaattaaggtctctacggttcattctatggcggttatgaagcaatcggatcctccgtcttctggaagtttcgacccgaatattggggatttgttgaaaggattgttggagttcaataaagctactggttctcctttcgccattaatccttatccgtttttcgcttatcagagtgatcctagacctgatactttagctttttgcttgtttcaacctaatgctggtcgagttgatgctggcaccaagatcaagtacaccaccatgttcgatgctcaggtggatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="76790" stop="75166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76490" g_stop="76298" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76297" i_stop="76133" i_length="165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76132" g_stop="75468" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="858" r_length="665" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E727686" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76490" e_stop="76298"/>
          <exon e_start="76132" e_stop="75468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAATCTAAACACCTTTGAAGTTTCTTTTGTATGCTCTGTTTTTGTACTTTGTACTTCAAAAAGCTATCTCTATTTATACTTCTTCTCCGTCAATTATTTTTCACCATCAAATTAACATCCATGGCTAATTTGCTTCACAATTCATCCTTCTTCCTTCTTCTCTGTCTCTTGCATTTCGTACTCGTCGCGAGTAAGCTCTTTTAACTCTTTAAATATGCATTTGTATTGTTATAAATCAACCAAATTACATGTATTCGTTGAGTTCAGTGTAATTTTTCGACGAAGGAGATTCAATTGAACTATAATTTTTTTGTATTCAAATTTGTTTACTAATTATTATATGCTAATATTGCAGAATCGCAGTCATTTATTGGTATAAATTATGGCCAAGTTGCGGATAATTTACCGGCACCGGAGGCAACAGCCAAGTTACTACAATCAACTTCAATTCAAAAAGTCCGGTTATACGGATCCGACCCGGCAATTATCAAAGCTTTAGCAAATACCGGTATCGGAATCATGATCGGAGTAGCCAACGGTGATATTCCGGCGATGGCATCAGACCCGAACTTCGCAAAAGGATGGCTGAGTTCAAACGTGCTTCCGTTTTACCCGGCGAGTGAAATTATCGTAATTAACGTCGGAAATGAGGTTATGTCTTCAAATGATCAGAATCTGATGACGAATTTGTTGCCGGCGATGCAAAATTTACGAAAAGCCCTAAATGATGTTTCAATTGGAGGGAAAATTAAGGTCTCTACGGTTCATTCTATGGCGGTTATGAAGCAATCGGATCCTCCGTCTTCTGGAAGTTTCGACCCGAATATTGGGGATTTGTTGAAAGGATTGTTGGAGTTCAATAAAGCTACTGGTTCTCCTTTCGCCATTAATCCTTATCCGTTTTTCGCTTATCAGAGTGATCCTAGACCTGATACTTTAGCTTTTTGCTTGTTTCAACCTAATGCTGGTCGAGTTGATGCTGGCACCAAGATCAAGTACACCAACATGTTCGATGCTCAG</genome_strand>
        <mrna_strand>GAAGAATCTAAACACCTTTGAAGTTTCTTTTGTATGCTCTGTTTTTGTACTTTGTACTTCGAAAAGCTATCTCTATTTATACTTCTTCTCCATCAATTATTTTTCTCCATCAAATTAACATCCATGGCTAATTTGCTTCACAATTCATCCTTCTTCCTTCTTCTCTGTCTCTTGCATTTCGTACTCGTCGCGA.....................................................................................................................................................................AATCGCAGTCATTTATTGGTATAAATTATGGCCAAGTTGCGGATAATTTACCGGCACCGGAGGCAACAGCCAAGTTACTACAATCAACTTCAATTCAAAAAGTCCGGTTATACGGATCCGACCCGGCAATTATCAAAGCTTTAGCAAATACCGGTATCGGAATCATGATCGGAGTAGCCAACGGTGATATTCCGGCGATGGCATCAGACCCGAACTTTGCTAAAGGATGGCTGAGTTCAAACGTGCTTCCGTTTTATCCGGCGAGTGAAATTATCGTAATTAACGTCGGAAATGAGGTTATGTCTTCAAATGATCAGAATCTGATGACGAATTTGTTGCCGGCGATGCAAAATTTACAAAAAGCCCTAAATGATGTTTCAATTGGAGGGAAAATTAAGGTCTCTACGGTTCATTCTATGGCGGTTATGAAGCAATCGGATCCTCCGTCTTCTGGAAGTTTCGACCCGAATATTGGGGATTTGTTGAAAGGATTGTTGGAGTTCAATAAAGCTACTGGTTCTCCTTTCGCCATTAATCCTTATCCGTTTTTCGCTTATCAGAGTGATCCTAGACCTGATACTTTAGCTTTTTGCTTGTTTCAACCTAATGCTGGTCGAGTTGATGCTGGCACCAAGATCAAGTACACCACCATGTTCGATGCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E705141" ref_strand="+" ref_description="SGN-E705141 [FA26BB07]">
      <seq>aaacacctttgaagtttcttttgtatgctctgtttttgtactttgtacttcgaaaagctatctctatttatacttcttctccatcaattatttttctccatcaaattaacatccatggctaatttgcttcacaattcatccttcttccttcttctctgtctcttgcatttcgtactcgtcgcgaaatcgcagtcatttattggtataaattatggccaagttgcggataatttaccggcaccggaggcaacagccaagttactacaatcaacttcaattcaaaaagtccggttatacggatccgacccggcaattatcaaagctttagcaaataccggtatcggaatcatgatcggagtagccaacggtgatattccggcgatggcatcagacccgaactttgctaaaggatggctgagttcaaacgtgcttccgttttatccggcgagtgaaattatcgtaattaacgtcggaaatgaggttatgtcttcaaatgatcagaatctgatgacgaatttgttgccggcgatgcaaaatttacaaaaagccctaaatgatgtttcaattggagggaaaattaaggtctctacggttcattctatggcggttatgaagcaatcggatcctccgtcttctggaagtttcgacccgaatattggggatttgttgaaaggattgttggagttcaataaagctactggttctcctttcgccattaatccttatccgtttttcgcttatcagagtgatcctagacctgatactttagctttttgcttgtttcaacctaatgctggtcgagttgatgctggcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="76781" stop="75201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76481" g_stop="76298" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76297" i_stop="76133" i_length="165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76132" g_stop="75501" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="816" r_length="632" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E705141" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76481" e_stop="76298"/>
          <exon e_start="76132" e_stop="75501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACCTTTGAAGTTTCTTTTGTATGCTCTGTTTTTGTACTTTGTACTTCAAAAAGCTATCTCTATTTATACTTCTTCTCCGTCAATTATTTTTCACCATCAAATTAACATCCATGGCTAATTTGCTTCACAATTCATCCTTCTTCCTTCTTCTCTGTCTCTTGCATTTCGTACTCGTCGCGAGTAAGCTCTTTTAACTCTTTAAATATGCATTTGTATTGTTATAAATCAACCAAATTACATGTATTCGTTGAGTTCAGTGTAATTTTTCGACGAAGGAGATTCAATTGAACTATAATTTTTTTGTATTCAAATTTGTTTACTAATTATTATATGCTAATATTGCAGAATCGCAGTCATTTATTGGTATAAATTATGGCCAAGTTGCGGATAATTTACCGGCACCGGAGGCAACAGCCAAGTTACTACAATCAACTTCAATTCAAAAAGTCCGGTTATACGGATCCGACCCGGCAATTATCAAAGCTTTAGCAAATACCGGTATCGGAATCATGATCGGAGTAGCCAACGGTGATATTCCGGCGATGGCATCAGACCCGAACTTCGCAAAAGGATGGCTGAGTTCAAACGTGCTTCCGTTTTACCCGGCGAGTGAAATTATCGTAATTAACGTCGGAAATGAGGTTATGTCTTCAAATGATCAGAATCTGATGACGAATTTGTTGCCGGCGATGCAAAATTTACGAAAAGCCCTAAATGATGTTTCAATTGGAGGGAAAATTAAGGTCTCTACGGTTCATTCTATGGCGGTTATGAAGCAATCGGATCCTCCGTCTTCTGGAAGTTTCGACCCGAATATTGGGGATTTGTTGAAAGGATTGTTGGAGTTCAATAAAGCTACTGGTTCTCCTTTCGCCATTAATCCTTATCCGTTTTTCGCTTATCAGAGTGATCCTAGACCTGATACTTTAGCTTTTTGCTTGTTTCAACCTAATGCTGGTCGAGTTGATGCTGGCACC</genome_strand>
        <mrna_strand>AAACACCTTTGAAGTTTCTTTTGTATGCTCTGTTTTTGTACTTTGTACTTCGAAAAGCTATCTCTATTTATACTTCTTCTCCATCAATTATTTTTCTCCATCAAATTAACATCCATGGCTAATTTGCTTCACAATTCATCCTTCTTCCTTCTTCTCTGTCTCTTGCATTTCGTACTCGTCGCGA.....................................................................................................................................................................AATCGCAGTCATTTATTGGTATAAATTATGGCCAAGTTGCGGATAATTTACCGGCACCGGAGGCAACAGCCAAGTTACTACAATCAACTTCAATTCAAAAAGTCCGGTTATACGGATCCGACCCGGCAATTATCAAAGCTTTAGCAAATACCGGTATCGGAATCATGATCGGAGTAGCCAACGGTGATATTCCGGCGATGGCATCAGACCCGAACTTTGCTAAAGGATGGCTGAGTTCAAACGTGCTTCCGTTTTATCCGGCGAGTGAAATTATCGTAATTAACGTCGGAAATGAGGTTATGTCTTCAAATGATCAGAATCTGATGACGAATTTGTTGCCGGCGATGCAAAATTTACAAAAAGCCCTAAATGATGTTTCAATTGGAGGGAAAATTAAGGTCTCTACGGTTCATTCTATGGCGGTTATGAAGCAATCGGATCCTCCGTCTTCTGGAAGTTTCGACCCGAATATTGGGGATTTGTTGAAAGGATTGTTGGAGTTCAATAAAGCTACTGGTTCTCCTTTCGCCATTAATCCTTATCCGTTTTTCGCTTATCAGAGTGATCCTAGACCTGATACTTTAGCTTTTTGCTTGTTTCAACCTAATGCTGGTCGAGTTGATGCTGGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E729318" ref_strand="+" ref_description="SGN-E729318 [LA20CG10]">
      <seq>nattgcttcacaattcatccttcttcctcttctctgtctcttgcatttcgtactcgacgcgaaaacgcagtcatttattggtataaattatggccaagttgcggataatttaccggcaccggaggcaacagccaagttactacaatcaacttcaattcaaaaagtccggttatacggatccgacccggcaattatcaaagctttagcaaataccggtatcggaatcatgaacggagtagccaacggtgatattccggcgatggcatcagacccgaactttgctaaaggatggctgagttcaaacgtgcttccgttttaaccggcgagtgaaattatcgtaattaacgtcggaaatgaggttatgtcttcaaatgatcagaatctgatgacgaattcgttgccggcgatgcaaaatttacaaaaagccctaaatgatgtttcaattggagggaaaattaaggtctctacggttcattctatggcggttatgaagcaatcggatcctccgtcttctggaagtttcgacccgaatttaggggatttgttgaaaggattgttggagttcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="76658" stop="75324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76360" g_stop="76298" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76297" i_stop="76133" i_length="165">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76132" g_stop="75624" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="571" r_length="509" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E729318" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76360" e_stop="76298"/>
          <exon e_start="76132" e_stop="75624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCTTCACAATTCATCCTTCTTCCTTCTTCTCTGTCTCTTGCATTTCGTACTCGTCGCGAGTAAGCTCTTTTAACTCTTTAAATATGCATTTGTATTGTTATAAATCAACCAAATTACATGTATTCGTTGAGTTCAGTGTAATTTTTCGACGAAGGAGATTCAATTGAACTATAATTTTTTTGTATTCAAATTTGTTTACTAATTATTATATGCTAATATTGCAGAATCGCAGTCATTTATTGGTATAAATTATGGCCAAGTTGCGGATAATTTACCGGCACCGGAGGCAACAGCCAAGTTACTACAATCAACTTCAATTCAAAAAGTCCGGTTATACGGATCCGACCCGGCAATTATCAAAGCTTTAGCAAATACCGGTATCGGAATCATGATCGGAGTAGCCAACGGTGATATTCCGGCGATGGCATCAGACCCGAACTTCGCAAAAGGATGGCTGAGTTCAAACGTGCTTCCGTTTTACCCGGCGAGTGAAATTATCGTAATTAACGTCGGAAATGAGGTTATGTCTTCAAATGATCAGAATCTGATGACGAATTTGTTGCCGGCGATGCAAAATTTACGAAAAGCCCTAAATGATGTTTCAATTGGAGGGAAAATTAAGGTCTCTACGGTTCATTCTATGGCGGTTATGAAGCAATCGGATCCTCCGTCTTCTGGAAGTTTCGACCCGAATATTGGGGATTTGTTGAAAGGATTGTTGGAGTTCAATAAA</genome_strand>
        <mrna_strand>NATTGCTTCACAATTCATCCTTCTTCC-TCTTCTCTGTCTCTTGCATTTCGTACTCGACGCGA.....................................................................................................................................................................AAACGCAGTCATTTATTGGTATAAATTATGGCCAAGTTGCGGATAATTTACCGGCACCGGAGGCAACAGCCAAGTTACTACAATCAACTTCAATTCAAAAAGTCCGGTTATACGGATCCGACCCGGCAATTATCAAAGCTTTAGCAAATACCGGTATCGGAATCATGAACGGAGTAGCCAACGGTGATATTCCGGCGATGGCATCAGACCCGAACTTTGCTAAAGGATGGCTGAGTTCAAACGTGCTTCCGTTTTAACCGGCGAGTGAAATTATCGTAATTAACGTCGGAAATGAGGTTATGTCTTCAAATGATCAGAATCTGATGACGAATTCGTTGCCGGCGATGCAAAATTTACAAAAAGCCCTAAATGATGTTTCAATTGGAGGGAAAATTAAGGTCTCTACGGTTCATTCTATGGCGGTTATGAAGCAATCGGATCCTCCGTCTTCTGGAAGTTTCGACCCGAATTTAGGGGATTTGTTGAAAGGATTGTTGGAGTTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E231405" ref_strand="+" ref_description="SGN-E231405 [cLED-10-B12]">
      <seq>agatgagttatccccaactttgcaagacacagagctgcagaaggatgacaaaagctgctctggtggagcagaacagtcaactgaaagccagacaagagaagcagatgcagacaacataggatctaatgagccagacgcgagcatggagatactcgacttccaaaccgagctacttggtaaaatagagaacagtacctcgtgcaacacaattatggaaaaggaatgtgacaacctgacagattctggaactgtgatttcaaatgaaaatcatcaagaaaaaacgccacaagaagttgaaatatccatggaccagaatgtcagagaagataggccatagatattacaagctacagaccaatttaatgggattcatcaagaagcctcacagaacagtaaacttttctatgatgaacaaaatagaagttttcctgccaaatttacaggaaaaggaggtataaaaatctccaatgctgttagaaatgatcaagagacagctctcgcattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="82576" stop="81012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82276" g_stop="82009" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82008" i_stop="81878" i_length="131">
            <donor d_prob="0.707" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81877" g_stop="81781" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="365" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81780" i_stop="81546" i_length="235">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81545" g_stop="81468" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="443" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81467" i_stop="81376" i_length="92">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81375" g_stop="81312" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="507" r_length="64" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E231405" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82276" e_stop="82009"/>
          <exon e_start="81877" e_stop="81781"/>
          <exon e_start="81545" e_stop="81468"/>
          <exon e_start="81375" e_stop="81312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAGTTATCCCCAACTTTGCAAGACACAGAGCTGCAGAAGGATGACAAAAGCTGCTCTGGTGGAGCAGAACAGTCAACTGAAAGCCAGACAAGAGAAGCAAATGCAGACAACATAGGATCTAATGAGCCAGATGTGAGCATGGAGATACTCGACTTCCAAACCGAGCTACTTGGTAAAATAGAGAACAGTACCTCGTGCAACACAATTATGGAAAAGGAATGTGACAACCTGACAGATTCTGGAACTGTGATTTCAAATGAAAATGTAAGTTCATCTGTGAGAAGAAAGCTAAACTTAAGTGCGCCGTTGGCATGCTTTAATGATTCAGAGTAGTTTTATATTTAGAAACCTACATATGAAATACCTTCATAACATGCTTTGTTGGATTCCTGCAGCATCAAGAAAAAACGCCACAAGAAGTTGAAATATCCATGGACCAGAAAGTCAGAGAAGATAGGCCAAAGATATTACAAGCTACAGACCAATTTAATGGTATGTCATATCTTCTTATATATAATAAATGTAGCATTCTTAACTTGCAAGGCTTGATAGCAGTCCTATAATCTCTATATCCCAATGATTAGCGCCTTTCAAACTCCGACCACAATAATCAAATATCATTGACACTATATGAAATATTATTAGTATTCAGCCTTCGTTATATGTTTCACATGAGATGAAACATAGCTCATATACTGCAAACTGGTTCTAACGATCAATGTTGCAGGGATTCATCAAGAAGCCTCACAGAACAGTAAACTTTTCTATGATGAACAAAATAAAAGTTTTCCTGCCAAATTTACAGGTACTGATATAAAAATCTTATTTTCTGTTCATTTACATGTAAAAAGATGAACGTCATAGACGAAGTTTCTCACCCCTCTGATCATATTGCAGGAAAAGGAGGTATAAAAATCTCCAATGTTGTTAGAAATGATCAAGAAACAGCTCTCACATTAGT</genome_strand>
        <mrna_strand>AGATGAGTTATCCCCAACTTTGCAAGACACAGAGCTGCAGAAGGATGACAAAAGCTGCTCTGGTGGAGCAGAACAGTCAACTGAAAGCCAGACAAGAGAAGCAGATGCAGACAACATAGGATCTAATGAGCCAGACGCGAGCATGGAGATACTCGACTTCCAAACCGAGCTACTTGGTAAAATAGAGAACAGTACCTCGTGCAACACAATTATGGAAAAGGAATGTGACAACCTGACAGATTCTGGAACTGTGATTTCAAATGAAAAT...................................................................................................................................CATCAAGAAAAAACGCCACAAGAAGTTGAAATATCCATGGACCAGAATGTCAGAGAAGATAGGCCATAGATATTACAAGCTACAGACCAATTTAATG...........................................................................................................................................................................................................................................GGATTCATCAAGAAGCCTCACAGAACAGTAAACTTTTCTATGATGAACAAAATAGAAGTTTTCCTGCCAAATTTACAG............................................................................................GAAAAGGAGGTATAAAAATCTCCAATGCTGTTAGAAATGATCAAGAGACAGCTCTCGCATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E236645" ref_strand="+" ref_description="SGN-E236645 [cLED-13-J8]">
      <seq>ctctccgaaaatagatgagttatccccaactttgcaagacacagagctgcagaaggatgacaaaagctgctctggtggagcagaacagtcaactgaaagccagacaagagaagcaaatgcagacaacataggatctaatgagccagatgtgagcatggagatactcgacttccaaaccgagctacttggtaaaatagagaacagtacctcgtgcaacacaattatggaaaaggaatgtgacaacctgacagattctggaactgtgatttcaaatgaaaatcatcaagaaaaaacgccacaagaagttgaaatatccatggaccagaaagtcagagaagataggccaaagatattacaagctacagaccaatttaatgggattcatcaagaagcctcacagaacagtaaacttttctatgatgaacaaaataaaagttttcctgccaaatttacaggaaaaggaggtataaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="82588" stop="81153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82288" g_stop="82009" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82008" i_stop="81878" i_length="131">
            <donor d_prob="0.707" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81877" g_stop="81781" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="377" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81780" i_stop="81546" i_length="235">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81545" g_stop="81468" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="455" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81467" i_stop="81376" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81375" g_stop="81357" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="474" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E236645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82288" e_stop="82009"/>
          <exon e_start="81877" e_stop="81781"/>
          <exon e_start="81545" e_stop="81468"/>
          <exon e_start="81375" e_stop="81357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCGAAAATAGATGAGTTATCCCCAACTTTGCAAGACACAGAGCTGCAGAAGGATGACAAAAGCTGCTCTGGTGGAGCAGAACAGTCAACTGAAAGCCAGACAAGAGAAGCAAATGCAGACAACATAGGATCTAATGAGCCAGATGTGAGCATGGAGATACTCGACTTCCAAACCGAGCTACTTGGTAAAATAGAGAACAGTACCTCGTGCAACACAATTATGGAAAAGGAATGTGACAACCTGACAGATTCTGGAACTGTGATTTCAAATGAAAATGTAAGTTCATCTGTGAGAAGAAAGCTAAACTTAAGTGCGCCGTTGGCATGCTTTAATGATTCAGAGTAGTTTTATATTTAGAAACCTACATATGAAATACCTTCATAACATGCTTTGTTGGATTCCTGCAGCATCAAGAAAAAACGCCACAAGAAGTTGAAATATCCATGGACCAGAAAGTCAGAGAAGATAGGCCAAAGATATTACAAGCTACAGACCAATTTAATGGTATGTCATATCTTCTTATATATAATAAATGTAGCATTCTTAACTTGCAAGGCTTGATAGCAGTCCTATAATCTCTATATCCCAATGATTAGCGCCTTTCAAACTCCGACCACAATAATCAAATATCATTGACACTATATGAAATATTATTAGTATTCAGCCTTCGTTATATGTTTCACATGAGATGAAACATAGCTCATATACTGCAAACTGGTTCTAACGATCAATGTTGCAGGGATTCATCAAGAAGCCTCACAGAACAGTAAACTTTTCTATGATGAACAAAATAAAAGTTTTCCTGCCAAATTTACAGGTACTGATATAAAAATCTTATTTTCTGTTCATTTACATGTAAAAAGATGAACGTCATAGACGAAGTTTCTCACCCCTCTGATCATATTGCAGGAAAAGGAGGTATAAAAAT</genome_strand>
        <mrna_strand>CTCTCCGAAAATAGATGAGTTATCCCCAACTTTGCAAGACACAGAGCTGCAGAAGGATGACAAAAGCTGCTCTGGTGGAGCAGAACAGTCAACTGAAAGCCAGACAAGAGAAGCAAATGCAGACAACATAGGATCTAATGAGCCAGATGTGAGCATGGAGATACTCGACTTCCAAACCGAGCTACTTGGTAAAATAGAGAACAGTACCTCGTGCAACACAATTATGGAAAAGGAATGTGACAACCTGACAGATTCTGGAACTGTGATTTCAAATGAAAAT...................................................................................................................................CATCAAGAAAAAACGCCACAAGAAGTTGAAATATCCATGGACCAGAAAGTCAGAGAAGATAGGCCAAAGATATTACAAGCTACAGACCAATTTAATG...........................................................................................................................................................................................................................................GGATTCATCAAGAAGCCTCACAGAACAGTAAACTTTTCTATGATGAACAAAATAAAAGTTTTCCTGCCAAATTTACAG............................................................................................GAAAAGGAGGTATAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E268889" ref_strand="+" ref_description="SGN-E268889 [cLEM-4-H21]">
      <seq>tgccatccacagataggatggatcatcataacaaaattcatagaactgagacctctccgaaaatagatgagttatccccaactttgcaagacacagagctgcagaaggatgacaaaagctgctctggtggagcagaacagtcaactgaaagccagacaagagaagcaaatgcagacaacataggatctaatgagccagatgtgagcatggagatactcgacttccaaaccgagctacttggtaaaatagagaacagtacctcgtgcaacacaattatggaaaaggaatgtgacaacctgacagattctggaactgtgatttcaaatgaaaatcatcaagaaaaaacgccacaagaagttgaaatatccatggaccagaaagtcagagaagataggccaaagatattacaagctacagaccaatttaatgggattcatcaagaagcctcacagaacagtaaacttttctatgatgaacaaaataaaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="82640" stop="81185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82340" g_stop="82009" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82008" i_stop="81878" i_length="131">
            <donor d_prob="0.707" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81877" g_stop="81781" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="429" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81780" i_stop="81546" i_length="235">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81545" g_stop="81485" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="490" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E268889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82340" e_stop="82009"/>
          <exon e_start="81877" e_stop="81781"/>
          <exon e_start="81545" e_stop="81485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATCCACAGATAGGATGGATCATCATAACAAAATTCATAGAACTGAGACCTCTCCGAAAATAGATGAGTTATCCCCAACTTTGCAAGACACAGAGCTGCAGAAGGATGACAAAAGCTGCTCTGGTGGAGCAGAACAGTCAACTGAAAGCCAGACAAGAGAAGCAAATGCAGACAACATAGGATCTAATGAGCCAGATGTGAGCATGGAGATACTCGACTTCCAAACCGAGCTACTTGGTAAAATAGAGAACAGTACCTCGTGCAACACAATTATGGAAAAGGAATGTGACAACCTGACAGATTCTGGAACTGTGATTTCAAATGAAAATGTAAGTTCATCTGTGAGAAGAAAGCTAAACTTAAGTGCGCCGTTGGCATGCTTTAATGATTCAGAGTAGTTTTATATTTAGAAACCTACATATGAAATACCTTCATAACATGCTTTGTTGGATTCCTGCAGCATCAAGAAAAAACGCCACAAGAAGTTGAAATATCCATGGACCAGAAAGTCAGAGAAGATAGGCCAAAGATATTACAAGCTACAGACCAATTTAATGGTATGTCATATCTTCTTATATATAATAAATGTAGCATTCTTAACTTGCAAGGCTTGATAGCAGTCCTATAATCTCTATATCCCAATGATTAGCGCCTTTCAAACTCCGACCACAATAATCAAATATCATTGACACTATATGAAATATTATTAGTATTCAGCCTTCGTTATATGTTTCACATGAGATGAAACATAGCTCATATACTGCAAACTGGTTCTAACGATCAATGTTGCAGGGATTCATCAAGAAGCCTCACAGAACAGTAAACTTTTCTATGATGAACAAAATAAAAGTTT</genome_strand>
        <mrna_strand>TGCCATCCACAGATAGGATGGATCATCATAACAAAATTCATAGAACTGAGACCTCTCCGAAAATAGATGAGTTATCCCCAACTTTGCAAGACACAGAGCTGCAGAAGGATGACAAAAGCTGCTCTGGTGGAGCAGAACAGTCAACTGAAAGCCAGACAAGAGAAGCAAATGCAGACAACATAGGATCTAATGAGCCAGATGTGAGCATGGAGATACTCGACTTCCAAACCGAGCTACTTGGTAAAATAGAGAACAGTACCTCGTGCAACACAATTATGGAAAAGGAATGTGACAACCTGACAGATTCTGGAACTGTGATTTCAAATGAAAAT...................................................................................................................................CATCAAGAAAAAACGCCACAAGAAGTTGAAATATCCATGGACCAGAAAGTCAGAGAAGATAGGCCAAAGATATTACAAGCTACAGACCAATTTAATG...........................................................................................................................................................................................................................................GGATTCATCAAGAAGCCTCACAGAACAGTAAACTTTTCTATGATGAACAAAATAAAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E542586" ref_strand="+" ref_description="SGN-E542586 [TUS-63-P14]">
      <seq>tgggtacgggcccccctcgagtttttttttttttttctccgatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="85404" stop="91279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90132" g_stop="90533" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90979" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="745" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E542586" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90132" e_stop="90533"/>
          <exon e_start="90635" e_stop="90979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATACCTTTTCCCTCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTG</genome_strand>
        <mrna_strand>TGGGTA-CGGGCCCCCCTCGAGTTTTTTTTTTTTTTTCTCC-GATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E722355" ref_strand="+" ref_description="SGN-E722355 [FC17AB01]">
      <seq>gataccttttccctctacgcctatcttcgtcttttctccagatctctctctggttgtttatcttcttcaaatttcatgatcagatctgtgtagatcgttccttgatctacgttttggttatggatttgccgtgtttctgtaccggaccgccgtggttttgtgccggaccggctactgacgggccgtatggattgatgggtcgatgtttgtttgatctggccgacggttgacgacgagatggcggatctgatgtctttttgtgctggtttgaggtagatgagcataatcgagcatcagatctgttcggtcttcatagatttgtggagattggagcaaaagtttcagcaaccgtgatgttatcctttcgagggttcaaccgttgttcggaagagatttattggtttgaagatagatgcaaggactatcggtttggtgccttgttgtcatagatcaggctcttttgaccggttatcatcggccgaaggttgaatcaaagaacgttatggtgatccaaggttatgatggtctaattttgatgtttataattatttaaatgttttatttgcttcagtttttattgatgcatgcacatgtacgagagataaaagaacgagttgaggttgtgcgaggtatgagaggaaaaagtgaggtgtttaaaaaaaaaaaaaaaaaaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89835" stop="91191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90134" g_stop="90533" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.88"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90891" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="656" r_length="256" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="678"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E722355" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90134" e_stop="90533"/>
          <exon e_start="90635" e_stop="90891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACCTTTTCCCTCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGG-CGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTA</genome_strand>
        <mrna_strand>GATACCTTTTCCCTCTACGCCTATCTTCGTCTTTTCTCCAGATCTCTCTCTGGTTGTTTATCTTCTTCAAATTTCATGATCAGATCTGTGTAGATCGTTCCTTGATCTACGTTTTGGTTATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTGCCGGACCGGCTACTGACGGGCCGTATGGATTGATGGGTCGATGTTTGTTTGATCTGGCCGACGGTTGACGACGAGATGGCGGATCTGATGTCTTTTTGTGCTGGTTTGAGGTAGATGAGCATAATCGAGCATCAGATCTGTTCGGTCTTCATAGATTTGTGGAGATTGGAGCAAAAGTTTCAGCAACCGTGATGTTATCCTTTCGAGGGTTCAACCGTTGTTCGGAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTGGTGCCTTGTTGTCATAGATCAGGCTCTTTTGACCGGTTATCATCGGCCGAAGGTTGAATCAAAGAACGTTATGGTG-ATCCAAGGTTATGATGGTCTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTCAGTTTTTATTGATGCATGCACATGTACGAGAGATAAAAGAACGAGTTGAGGTTGTGCGAGGTATGAGAGG-AAAAAGTGAGGTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E721060" ref_strand="+" ref_description="SGN-E721060 [FC12CF06]">
      <seq>cggccgaattgataccttttccctctccgtctatcttcgtcttttctccaaatctctctctggttgtttatcttcttcaaatttcatgatcagatctgtgtagatcgttccttgatctacgttttggttatggatttgccgtgtttctgtaccggaccgccgtggttttgtgccggaccggctactgacgggccgtatggattgatgggtcgatgtttgtttgatctggccgacggttgacgacgagatggcggatctgatgtctttttgtgctggtttgaggtagatgagcataatcgagcatcaaatctgttcggtcttcatagatttgtggagattggagcaaaattttcagcaaccgtgatgttatcctttcaagggttcaaccgttgttcggaagagatttattggtttgaagatagatgcaaggactatcggtttggtgccttgttgtcatagatcaggctcttttgaccggttatcatcggccgaaggttgaatcagagaacgttatggtgatccaaggttatgatggtctaattttgatgtttataattatttaaatgttttatttgcttcagtttttattgatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89886" stop="91120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90135" g_stop="90533" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="410" r_length="399" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.86"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90820" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="596" r_length="186" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E721060" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90135" e_stop="90533"/>
          <exon e_start="90635" e_stop="90820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCTTTTCCCTCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGG-CGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCAT</genome_strand>
        <mrna_strand>ATACCTTTTCCCTCTCCGTCTATCTTCGTCTTTTCTCCAAATCTCTCTCTGGTTGTTTATCTTCTTCAAATTTCATGATCAGATCTGTGTAGATCGTTCCTTGATCTACGTTTTGGTTATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTGCCGGACCGGCTACTGACGGGCCGTATGGATTGATGGGTCGATGTTTGTTTGATCTGGCCGACGGTTGACGACGAGATGGCGGATCTGATGTCTTTTTGTGCTGGTTTGAGGTAGATGAGCATAATCGAGCATCAAATCTGTTCGGTCTTCATAGATTTGTGGAGATTGGAGCAAAATTTTCAGCAACCGTGATGTTATCCTTTCAAGGGTTCAACCGTTGTTCGGAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTGGTGCCTTGTTGTCATAGATCAGGCTCTTTTGACCGGTTATCATCGGCCGAAGGTTGAATCAGAGAACGTTATGGTG-ATCCAAGGTTATGATGGTCTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTCAGTTTTTATTGATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E746484" ref_strand="+" ref_description="SGN-E746484 [GI|47104266]">
      <seq>tctacgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89847" stop="93232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90147" g_stop="90533" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="92466" g_length="1832"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="2218" r_length="1831" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92580" g_stop="92928" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="2219" r_stop="2567" r_length="349" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2570" polyA_stop="2584"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E746484" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>2568</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90147" e_stop="90533"/>
          <exon e_start="90635" e_stop="92466"/>
          <exon e_start="92580" e_stop="92928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTG</genome_strand>
        <mrna_strand>TCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E543515" ref_strand="+" ref_description="SGN-E543515 [TUS-65-F23]">
      <seq>tctacgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaagtttgagaggaaaaaagtgaggtgtttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89847" stop="91194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90147" g_stop="90533" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90894" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="647" r_length="260" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E543515" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90147" e_stop="90533"/>
          <exon e_start="90635" e_stop="90894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTG</genome_strand>
        <mrna_strand>TCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAAGTTTGAGAGGAAAAAAGTGAGGTGTTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E333807" ref_strand="+" ref_description="SGN-E333807 [cTOD-22-F24]">
      <seq>tctacgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggctatgatggtttaattttgatgcttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89847" stop="91159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90147" g_stop="90533" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90859" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="612" r_length="225" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E333807" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90147" e_stop="90533"/>
          <exon e_start="90635" e_stop="90859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTG</genome_strand>
        <mrna_strand>TCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGCTATGATGGTTTAATTTTGATGCTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E324231" ref_strand="+" ref_description="SGN-E324231 [cTOC-4-I15]">
      <seq>tctacgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89847" stop="91034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90147" g_stop="90533" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90734" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="487" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E324231" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90147" e_stop="90533"/>
          <exon e_start="90635" e_stop="90734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGT</genome_strand>
        <mrna_strand>TCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E333593" ref_strand="+" ref_description="SGN-E333593 [cTOD-22-M20]">
      <seq>ctacgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaagagaggcacanggttttgcctggatctcctctctgtgtgtgtcgcctcttttatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89848" stop="91343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90148" g_stop="90533" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91043" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="795" r_length="409" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E333593" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90148" e_stop="90533"/>
          <exon e_start="90635" e_stop="91043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTT</genome_strand>
        <mrna_strand>CTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAAGAGAGGCACANGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E332573" ref_strand="+" ref_description="SGN-E332573 [cTOD-18-C14]">
      <seq>ctacgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaaggaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaagtaccctataaactatattttttggtgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89848" stop="91280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90148" g_stop="90533" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90980" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="730" r_length="344" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E332573" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90148" e_stop="90533"/>
          <exon e_start="90635" e_stop="90980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGG</genome_strand>
        <mrna_strand>CTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAAGGAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCC-AAAGTACCCTAT-AAACTATATTTTTTGGTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E334060" ref_strand="+" ref_description="SGN-E334060 [cTOD-24-F11]">
      <seq>ctacgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89848" stop="91280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90148" g_stop="90533" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90980" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="732" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E334060" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90148" e_stop="90533"/>
          <exon e_start="90635" e_stop="90980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGG</genome_strand>
        <mrna_strand>CTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E318161" ref_strand="+" ref_description="SGN-E318161 [cTOA-29-M21]">
      <seq>ctacgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaagaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaactatattttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89848" stop="91273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90148" g_stop="90533" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90973" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="723" r_length="337" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E318161" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90148" e_stop="90533"/>
          <exon e_start="90635" e_stop="90973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTG</genome_strand>
        <mrna_strand>CTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAAG-AAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAAT-AAACTATATTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E545854" ref_strand="+" ref_description="SGN-E545854 [TUS-68-O17]">
      <seq>ctacgcctatcttcgtctatactccagatctcttctaagtagtttatcttcttcaaatttcatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccgaaccgtggttttgtaccggaccggcgactgacgggccgtatggattaatggttcgatgcttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttttgtgctggtttgaggtagatgagaataatcgagcatcagatctgttcggtcttcatagatttgtggagattggagaagaggtttcagcaaccgtgatgttatcatcgcgagggttcaaccgttgttcgcaagagatttattggtttgaaaatagatgcaaggactatcggattggtgccttcttgtcatagatcaagttcttttgaccggttatcatcggccgaaggttgaatcagagaacgttatggtgaatctaaggttatgatggtttaattttgatgtttataattatttaaatgttatatttgccttagtttttatttatgcatagcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttattgttttatgttaccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89848" stop="91272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90148" g_stop="90533" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90972" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="723" r_length="340" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E545854" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90148" e_stop="90533"/>
          <exon e_start="90635" e_stop="90972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGG-CGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCAT-GCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTT</genome_strand>
        <mrna_strand>CTACGCCTATCTTCGTCTATACTCCAGATCTCTTCTAAGTAGTTTATCTTCTTCAAATTTCATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACC-GA--ACCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATTAATGGTTCGATGCTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTTTGTGCTGGTTTGAGGTAGATGAGAATAATCGAGCATCAGATCTGTTCGGTCTTCATAGATTTGTGGAGATTGGAGAAGAGGTTTCAGCAACCGTGATGTTATCATCGCGAGGGTTCAACCGTTGTTCGCAAGAGATTTATTG.....................................................................................................GTTTGAAAATAGATGCAAGGACTATCGGATTGGTGCCTTCTTGTCATAGATCAAGTTCTTTTGACCGGTTATCATCGGCCGAAGGTTGAATCAGAGAACGTTATGGTGAATCTAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTATATTTGCCTTAGTTTTTATTTATGCATAGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTATTGTTTTATGTTACCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E333988" ref_strand="+" ref_description="SGN-E333988 [cTOD-24-G3]">
      <seq>ctacgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89848" stop="91131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90148" g_stop="90533" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90831" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="583" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E333988" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90148" e_stop="90533"/>
          <exon e_start="90635" e_stop="90831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACG</genome_strand>
        <mrna_strand>CTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E332923" ref_strand="+" ref_description="SGN-E332923 [cTOD-19-M6]">
      <seq>ctacgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcgggtttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatgggttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89848" stop="91129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90148" g_stop="90533" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90829" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="581" r_length="195" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E332923" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90148" e_stop="90533"/>
          <exon e_start="90635" e_stop="90829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTA</genome_strand>
        <mrna_strand>CTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGGTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGGTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E304936" ref_strand="+" ref_description="SGN-E304936 [cLEX-10-F23]">
      <seq>ctacgcctatttttttttctcaatctttctaagtagttatcttctccaaattttatgatcagatctggaatcgtgcttgatctacgtttggatatggatttgccggtttctgtccggaccgcgggttttgtccggaccggcgactgacgccgatggatggatggtcgatatttgtttgttctgngccgcggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89848" stop="91127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90148" g_stop="90533" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90827" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="558" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E304936" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.038" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90148" e_stop="90533"/>
          <exon e_start="90635" e_stop="90827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTG-GCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATG</genome_strand>
        <mrna_strand>CTACGCCTAT-TT-TT-TTTTCT-CA-ATCT-TTCTAAGTAG-TTATCTTCTCCAAATTTTATGATCAGATCTG-G-A-ATCG-TGCTTGATCTACG-TTTGGATATGGATTTGCCG-GTTTCTGT-CCGGACCG-CG-GGTTTTGT-CCGGACCGGCGACTGAC--GCCG-ATGGATGGATGG-TCGATATTTGTTTGTTCTGNGCCG-CGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E340175" ref_strand="+" ref_description="SGN-E340175 [cTOF-2-A4]">
      <seq>tacgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattntgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaagtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgtttgggtgcgctcgcatggcangccaaaagtacctaataaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89849" stop="91260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90149" g_stop="90533" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90961" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="713" r_length="328" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E340175" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90149" e_stop="90533"/>
          <exon e_start="90635" e_stop="90961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATG-TTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAA</genome_strand>
        <mrna_strand>TACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTNTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAAGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTTGGGTGCGCTCGCATGGCANGCCAAAAGTACCTAATAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E316537" ref_strand="+" ref_description="SGN-E316537 [cTOA-25-M18]">
      <seq>tacgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89849" stop="91212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90149" g_stop="90533" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90912" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="663" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E316537" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90149" e_stop="90533"/>
          <exon e_start="90635" e_stop="90912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCT</genome_strand>
        <mrna_strand>TACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E329891" ref_strand="+" ref_description="SGN-E329891 [cTOD-3-P14]">
      <seq>tacgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89849" stop="91148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90149" g_stop="90533" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90848" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="599" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E329891" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90149" e_stop="90533"/>
          <exon e_start="90635" e_stop="90848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAG</genome_strand>
        <mrna_strand>TACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E328644" ref_strand="+" ref_description="SGN-E328644 [cTOC-23-P12]">
      <seq>tacgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataatttatttaaatgttttatttgcttaagtttttatcgatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89849" stop="91121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90149" g_stop="90533" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90821" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="573" r_length="188" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E328644" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90149" e_stop="90533"/>
          <exon e_start="90635" e_stop="90821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAA-TTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</genome_strand>
        <mrna_strand>TACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E324746" ref_strand="+" ref_description="SGN-E324746 [cTOC-8-L22]">
      <seq>tacgcctatcttcttcttttctccagatctcttctaaggagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89849" stop="91109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90149" g_stop="90533" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90809" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="560" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E324746" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90149" e_stop="90533"/>
          <exon e_start="90635" e_stop="90809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTT</genome_strand>
        <mrna_strand>TACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGGAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E331142" ref_strand="+" ref_description="SGN-E331142 [cTOD-6-P23]">
      <seq>caccccttccgcttccgttcttctgatctattctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatattaagatgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89850" stop="90739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90149" g_stop="90439" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E331142" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90149" e_stop="90439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCG</genome_strand>
        <mrna_strand>CACCCCT-TCCGCTTCCGTTCTTCTGATCTATTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTAAGATGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E298119" ref_strand="+" ref_description="SGN-E298119 [cLEW-9-A17]">
      <seq>tacgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89849" stop="90617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90149" g_stop="90317" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E298119" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90149" e_stop="90317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCC</genome_strand>
        <mrna_strand>TACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E332087" ref_strand="+" ref_description="SGN-E332087 [cTOD-16-C8]">
      <seq>acgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaagtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89850" stop="91280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90150" g_stop="90533" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90980" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="730" r_length="346" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E332087" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90150" e_stop="90533"/>
          <exon e_start="90635" e_stop="90980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGG</genome_strand>
        <mrna_strand>ACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAAGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E208055" ref_strand="+" ref_description="SGN-E208055 [cLEC-34-M18]">
      <seq>cgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89851" stop="91121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90151" g_stop="90533" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90821" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="570" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E208055" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90151" e_stop="90533"/>
          <exon e_start="90635" e_stop="90821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</genome_strand>
        <mrna_strand>CGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E207862" ref_strand="+" ref_description="SGN-E207862 [cLEC-34-E19]">
      <seq>cgcctatcttcttcttttctccagatctcttctaagtcgtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgcgtttctgtaccggaccgccgagggtttgtaccggaccggcgactgacgggccgtatggatggatggctcgatatttgtttgttctggccgacggctgacgaagagatggtggatctgatgtgtttgtgtgttcgcttgggatagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89851" stop="90713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90151" g_stop="90413" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E207862" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90151" e_stop="90413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGA</genome_strand>
        <mrna_strand>CGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTCGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGAGGGTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGCTCGATATTTGTTTGTTCTGGCCGACGGCTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGCTTGGGATAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E315653" ref_strand="+" ref_description="SGN-E315653 [cTOA-22-B14]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaagagaggcacagggttttgcctggatctcctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="91318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91018" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="766" r_length="384" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E315653" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="91018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCT</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAAGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E320209" ref_strand="+" ref_description="SGN-E320209 [cTOB-21-A4]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaagtgaggtgttactgttttatgttgcaggcctttggcatgttgggtgcgctcgcatggcangccaaagtaccctataaactatattttttggtgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="91280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90980" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="723" r_length="341" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E320209" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="90980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGG</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGG-AAAAAGTGAGGTG-TTACTGTTTTATGTTG-CAGGCCTTTGGCATGTTGGGTGCGCTCGCATGGCANGCC-AAAGTACCCTAT-AAACTATATTTTTTGGTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E320010" ref_strand="+" ref_description="SGN-E320010 [cTOB-31-M21]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaactatattttttggtgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="91280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90980" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="727" r_length="345" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E320010" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="90980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGG</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAAT-AAACTATATTTTTTGGTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E328499" ref_strand="+" ref_description="SGN-E328499 [cTOC-23-I17]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaagtgaggtgtttactgttttatgttgcccagcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaactatatttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="91274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90974" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="720" r_length="338" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E328499" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="90974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGG</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGG-AAAAAGTGAGGTGTTTACTGTTTTATGTTGCCCAGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAAT-AAACTATATTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E331944" ref_strand="+" ref_description="SGN-E331944 [cTOD-16-E16]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaactatattttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="91273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90973" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="720" r_length="338" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E331944" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="90973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTG</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAAT-AAACTATATTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E327079" ref_strand="+" ref_description="SGN-E327079 [cTOC-18-D24]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgntgggtgcgctcgcatggcangccaaaagtacctaataaactatattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="91271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90971" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="718" r_length="336" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E327079" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="90971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTT</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGNTGGGTGCGCTCGCATGGCANGCCAAAAGTACCTAAT-AAACTATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E334578" ref_strand="+" ref_description="SGN-E334578 [cTOD-23-I13]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="91256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90956" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="704" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E334578" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="90956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAA</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E315444" ref_strand="+" ref_description="SGN-E315444 [cTOA-22-B15]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="91224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90924" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="672" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E315444" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="90924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGG</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E317775" ref_strand="+" ref_description="SGN-E317775 [cTOA-30-E4]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggatttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgctatggtgaatccgaggctatgatggattaattctgatgtgtataattatttacatgctttatttgcttaagtgtttatcgatgcatgcacatgtacgagagatatagaatgagttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="91153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90853" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="600" r_length="218" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E317775" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="90853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAG</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGATTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGCTATGGTGAATCCGAGGCTATGATGGATTAATTCTGATGTGTATAATTATTTACATGCTTTATTTGCTTAAGTGTTTATCGATGCATGCACATGTACGAGAGAT-ATAGAATGAGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E263336" ref_strand="+" ref_description="SGN-E263336 [cLEG-62-O2]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatggtttatttgcttaagtttttatcgatgcatgcacctgtacgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="91135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90835" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="583" r_length="201" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E263336" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="90835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAG</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGGTTTATTTGCTTAAGTTTTTATCGATGCATGCACCTGTACGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E312764" ref_strand="+" ref_description="SGN-E312764 [cTOA-8-H17]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatatgatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcatcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggctttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcagcgaatgttgaatcatacaacgttattgtgaatccaaggttatgatggtttaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="91066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90766" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="515" r_length="132" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E312764" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="90766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATA-GATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATT</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATATGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCATCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGCTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCAGCGAATGTTGAATCATACAACGTTATTGTGAATCCAAGGTTATGATGGTTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E248963" ref_strand="+" ref_description="SGN-E248963 [cLEF-49-L2]">
      <seq>tcgtgccgattcggcacctatcttcttcttttctccagatctctgctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89847" stop="91027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="397" r_length="382" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90727" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="490" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E248963" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="90727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCAT</genome_strand>
        <mrna_strand>ACCTATCTTCTTCTTTTCTCCAGATCTCTGCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E271612" ref_strand="+" ref_description="SGN-E271612 [cLEM-23-L18]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="91027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90727" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="475" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E271612" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="90727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCAT</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E310800" ref_strand="+" ref_description="SGN-E310800 [cLEZ-15-G3]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtctatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgaccgttgaccaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcacatctgttcggtcttaatagatttgtggagattggagaataagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggntttgttcgttgttgtcatagatcaagctcttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="90999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90699" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="447" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E310800" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="90699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGAC</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTCTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACCGTTGACCAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCACATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAATAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGNTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E324480" ref_strand="+" ref_description="SGN-E324480 [cTOC-6-D12]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatgttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttggtgtcatagatcaagctcttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="90999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90699" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="447" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E324480" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="90699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGAC</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATGTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGGTGTCATAGATCAAGCTCTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E325224" ref_strand="+" ref_description="SGN-E325224 [cTOC-1-M17]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="90999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90699" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="447" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E325224" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="90699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGAC</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E322787" ref_strand="+" ref_description="SGN-E322787 [cTOB-30-K7]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattgggttgaagatagatgcaaggactatcggnttntgttcgttgttgtcatagatcaagctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="90995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90533" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90695" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="444" r_length="62" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E322787" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90533"/>
          <exon e_start="90635" e_stop="90695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGG-TTTTGTTCGTTGTTGTCATAGATCAAGCTCTTT</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GGTTGAAGATAGATGCAAGGACTATCGGNTTNTGTTCGTTGTTGTCATAGATCAAGCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E337098" ref_strand="+" ref_description="SGN-E337098 [cTOE-7-I20]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="90811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90511" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E337098" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACC</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E331935" ref_strand="+" ref_description="SGN-E331935 [cTOD-16-A16]">
      <seq>gcctatcttcttcttttctcagatctcttcgaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggacctccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgctcggtcttaatagatttgtggagattggagaagaagcttcagcaaccttgatgttatcatcgcgagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="90805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90505" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E331935" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGT</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCT-CAGATCTCTTCGAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCTCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGCTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGCTTCAGCAACCTTGATGTTATCATCGCGAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E204709" ref_strand="+" ref_description="SGN-E204709 [cLEC-14-N21]">
      <seq>gcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaatcttatgatcagatctgtgtagatcgttgcttgatctacgttgtggatatggatttgccgagtttctgtaccggaccggcgtgggtttgttcctgaccggtgactgacgggccgtatggaggggtgggtcgagatttgtacgatctggccgactgttgacgaagagattgtggatctgatgtgtttgtgtgtacgtttgggataaatgagcatagtccagcatcatatctgttccgtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89852" stop="90790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90490" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E204709" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGT</genome_strand>
        <mrna_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATCTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTGTGGATATGGATTTGCCGAGTTTCTGTACCGGACCGGCGTGGGTTTGTTCCTGACCGGTGACTGACGGGCCGTATGGAGGGGTGGGTCGAGATTTGTACGATCTGGCCGACTGTTGACGAAGAGATTGTGGATCTGATGTGTTTGTGTGTACGTTTGGGATAAATGAGCATAGTCCAGCATCATATCTGTTCCGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E280849" ref_strand="+" ref_description="SGN-E280849 [cLEL-6-L20]">
      <seq>gcacgagttcttcttttctccagatttcttctaagtagtttatcttctccagattggtatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89859" stop="90675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90375" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E280849" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATT-TTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGT</genome_strand>
        <mrna_strand>GCACGAGTTCTTCTTTTCTCCAGATTTCTTCTAAGTAGTTTATCTTCTCCAGATTGGTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E334484" ref_strand="+" ref_description="SGN-E334484 [cTOD-23-K18]">
      <seq>cctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtactaataaactatattttttggtgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89853" stop="91280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90153" g_stop="90533" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90980" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="725" r_length="344" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E334484" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90153" e_stop="90533"/>
          <exon e_start="90635" e_stop="90980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGG</genome_strand>
        <mrna_strand>CCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTA-CTAAT-AAACTATATTTTTTGGTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E331503" ref_strand="+" ref_description="SGN-E331503 [cTOD-9-E2]">
      <seq>cctatcttcttcttttctccagatctcttctaagtagttgatctgctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89853" stop="91148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90153" g_stop="90533" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90848" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="595" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E331503" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90153" e_stop="90533"/>
          <exon e_start="90635" e_stop="90848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAG</genome_strand>
        <mrna_strand>CCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTGATCTGCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E332912" ref_strand="+" ref_description="SGN-E332912 [cTOD-19-I6]">
      <seq>cctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89853" stop="91129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90153" g_stop="90533" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90829" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="576" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E332912" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90153" e_stop="90533"/>
          <exon e_start="90635" e_stop="90829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTA</genome_strand>
        <mrna_strand>CCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E312834" ref_strand="+" ref_description="SGN-E312834 [cTOA-8-O15]">
      <seq>cctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaagttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89853" stop="91117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90153" g_stop="90533" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90817" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="564" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E312834" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90153" e_stop="90533"/>
          <exon e_start="90635" e_stop="90817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATG</genome_strand>
        <mrna_strand>CCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAAGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E331594" ref_strand="+" ref_description="SGN-E331594 [cTOD-9-N10]">
      <seq>cctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89853" stop="91103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90153" g_stop="90533" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90803" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="550" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E331594" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90153" e_stop="90533"/>
          <exon e_start="90635" e_stop="90803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTA</genome_strand>
        <mrna_strand>CCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E320573" ref_strand="+" ref_description="SGN-E320573 [cTOB-22-D13]">
      <seq>cctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccggtgtgcgcaagagatttattggtttgaagatagatgcaaggactatcgggtttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaaggtatgatgggttaattttgatgtttataattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89853" stop="91083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90153" g_stop="90533" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90783" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="530" r_length="149" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E320573" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90153" e_stop="90533"/>
          <exon e_start="90635" e_stop="90783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTAT</genome_strand>
        <mrna_strand>CCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGGTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGGTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAAGGTATGATGGGTTAATTTTGATGTTTATAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E320605" ref_strand="+" ref_description="SGN-E320605 [cTOB-22-D8]">
      <seq>cctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccggtgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgcatccaagggtatgatgggttaattttgatggttataatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89853" stop="91082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90153" g_stop="90533" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90782" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="529" r_length="148" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E320605" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90153" e_stop="90533"/>
          <exon e_start="90635" e_stop="90782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTA</genome_strand>
        <mrna_strand>CCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGGTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGCATCCAAGGGTATGATGGGTTAATTTTGATGGTTATAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E300071" ref_strand="+" ref_description="SGN-E300071 [cLEW-11-A4]">
      <seq>ttttttttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90153" g_stop="90533" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90711" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="458" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E300071" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90153" e_stop="90533"/>
          <exon e_start="90635" e_stop="90711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCG</genome_strand>
        <mrna_strand>TTTTTTTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E318510" ref_strand="+" ref_description="SGN-E318510 [cTOB-10-C8]">
      <seq>cctatcttcttcttttctccaaatctcttctaagtagtttatcttttccaaattttatgatcagatctgtgtagatcgtggcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgcatggatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89853" stop="90628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90153" g_stop="90328" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E318510" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90153" e_stop="90328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGA</genome_strand>
        <mrna_strand>CCTATCTTCTTCTTTTCTCCAAATCTCTTCTAAGTAGTTTATCTTTTCCAAATTTTATGATCAGATCTGTGTAGATCGTGGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGCATGGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E553776" ref_strand="+" ref_description="SGN-E553776 [cTSC-2-D12]">
      <seq>ctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgcgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaagccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89854" stop="91370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90154" g_stop="90533" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91070" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="816" r_length="436" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E553776" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90154" e_stop="90533"/>
          <exon e_start="90635" e_stop="91070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCA</genome_strand>
        <mrna_strand>CTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAAGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E204248" ref_strand="+" ref_description="SGN-E204248 [cLEC-13-P17]">
      <seq>ctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgggtttctgtaccggaccggcggggttttgtaccggaccggctactgacgggccgtatggatggatggttcgatattagtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgcgtgctcgtatgggatagatgagcatagtctagcatcatatctgctcggtcttaatccatttgcggacattggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89854" stop="90767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90154" g_stop="90467" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E204248" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90154" e_stop="90467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGA</genome_strand>
        <mrna_strand>CTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGGGTTTCTGTACCGGACCGGCGGGGTTTTGTACCGGACCGGCTACTGACGGGCCGTATGGATGGATGGTTCGATATTAGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGCGTGCTCGTATGGGATAGATGAGCATAGTCTAGCATCATATCTGCTCGGTCTTAATCCATTTGCGGACATTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E200359" ref_strand="+" ref_description="SGN-E200359 [cLEC-1-O15]">
      <seq>ctatcttcttcttttctccagatctcttctaagtaggttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgagtttctgtaccggaccgccgcggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaacagatggcggatctgatgtgtttgcgtgttccattgggatagatgagcatagtcgagcatcatatctgttcggacttaatagacttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89854" stop="90756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90154" g_stop="90456" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E200359" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90154" e_stop="90456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTG</genome_strand>
        <mrna_strand>CTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGGTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGAGTTTCTGTACCGGACCGCCGCGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAACAGATGGCGGATCTGATGTGTTTGCGTGTTCCATTGGGATAGATGAGCATAGTCGAGCATCATATCTGTTCGGACTTAATAGACTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E333039" ref_strand="+" ref_description="SGN-E333039 [cTOD-19-I5]">
      <seq>ctatcttcttcttttctccagatctcttctaagtagcttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgacgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgactggccgtatggatggatggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89854" stop="90633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90154" g_stop="90333" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E333039" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90154" e_stop="90333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTT</genome_strand>
        <mrna_strand>CTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGCTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGACGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACTGGCCGTATGGATGGATGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E329047" ref_strand="+" ref_description="SGN-E329047 [cTOC-24-K24]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcangccaaaagtacctaataaaactatattttttggtgttggagaagagaagcacaggggttttgcctggatctcctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91018" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="764" r_length="385" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E329047" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="91018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACA-GGGTTTTGCCTGGATCTCCTCTCT</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCANGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAAGAGAAGCACAGGGGTTTTGCCTGGATCTCCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E343242" ref_strand="+" ref_description="SGN-E343242 [cTOF-17-C16]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcangccaaaagtacctaataaaactatattnnntggtgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90980" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="725" r_length="346" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E343242" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGG</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCANGCCAAAAGTACCTAATAAAACTATATTNNNTGGTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E702847" ref_strand="+" ref_description="SGN-E702847 [FA19DD12]">
      <seq>tatcttcgtcttttctccagatctctctctggttgtttatcttcttcaaatttcatgatcagatctgtgtagatcgttccttgatctacgttttggttatggatttgccgtgtttctgtaccggaccgccgtggttttgtgccggaccggctactgacgggccgtatggattgatgggtcgatgtttgtttgatctggccgacggttgacgacgagatggcggatctgatgtctttttgtgctggtttgaggtagatgagcataatcgagcatcagatctgttcggtcttcatagatttgtggagattggagcagaagtttcagcaaccgtgatgttatcctttcgagggttcaaccgttgttcggaagagatttattggtttgaagatagatgcaaggactatcggtttggtgccttgttgtcatagatcaggctcttttgaccggttatcatcggccgaaggttgaatcagagaacgttatggtgatccaaggttatgatggtctaattttgatgtttataattatttaaatgttttatttgcttcagtttttattgatgcatgcacatgtacgagagataaaagaacgagttgaggttgtgcgaggtatgagaggaaaaagtgaggtgtttattgttttatgttatcaggcctttgccatgttgggtgcgctcgcttggcaggcccaaagtacctaataaaactatattctttggtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.88"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90978" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="722" r_length="343" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E702847" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGG-CGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTT</genome_strand>
        <mrna_strand>TATCTTCGTCTTTTCTCCAGATCTCTCTCTGGTTGTTTATCTTCTTCAAATTTCATGATCAGATCTGTGTAGATCGTTCCTTGATCTACGTTTTGGTTATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTGCCGGACCGGCTACTGACGGGCCGTATGGATTGATGGGTCGATGTTTGTTTGATCTGGCCGACGGTTGACGACGAGATGGCGGATCTGATGTCTTTTTGTGCTGGTTTGAGGTAGATGAGCATAATCGAGCATCAGATCTGTTCGGTCTTCATAGATTTGTGGAGATTGGAGCAGAAGTTTCAGCAACCGTGATGTTATCCTTTCGAGGGTTCAACCGTTGTTCGGAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTGGTGCCTTGTTGTCATAGATCAGGCTCTTTTGACCGGTTATCATCGGCCGAAGGTTGAATCAGAGAACGTTATGGTG-ATCCAAGGTTATGATGGTCTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTCAGTTTTTATTGATGCATGCACATGTACGAGAGATAAAAGAACGAGTTGAGGTTGTGCGAGGTATGAGAGG-AAAAAGTGAGGTGTTTATTGTTTTATGTTATCAGGCCTTTGCCATGTTGGGTGCGCTCGCTTGGCAGGCCCAAAGTACCTAATAAAACTATATTCTTTGGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E340489" ref_strand="+" ref_description="SGN-E340489 [cTOF-1-H15]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatatttttttggtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90978" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="724" r_length="345" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E340489" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATA-TTTTTTGGTGTT</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTTGGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E343100" ref_strand="+" ref_description="SGN-E343100 [cTOF-11-L24]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgatgtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90975" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="720" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E343100" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGT</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGATGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E315212" ref_strand="+" ref_description="SGN-E315212 [cTOA-24-L24]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90965" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="709" r_length="330" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E315212" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTAT</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAAT-AAACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E333599" ref_strand="+" ref_description="SGN-E333599 [cTOD-22-O8]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgtttgcaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90955" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="700" r_length="321" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E333599" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTA</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTTGCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E327579" ref_strand="+" ref_description="SGN-E327579 [cTOC-20-I16]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90917" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="662" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E327579" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCC</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E544326" ref_strand="+" ref_description="SGN-E544326 [TUS-66-J15]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90905" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="650" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E544326" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGC</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E336998" ref_strand="+" ref_description="SGN-E336998 [cTOE-20-F3]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaagtttgagaggaaaaaagtgaggtgtttactgttttatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90903" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="648" r_length="269" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E336998" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTT</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAAGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E326915" ref_strand="+" ref_description="SGN-E326915 [cTOC-18-K6]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90868" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="613" r_length="234" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E326915" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTG</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E328081" ref_strand="+" ref_description="SGN-E328081 [cTOC-22-F3]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatggtttatttgcttaagtttttatcgatgcatgcacatgtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90831" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="576" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E328081" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACG</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGGTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E321257" ref_strand="+" ref_description="SGN-E321257 [cTOB-23-K5]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatggttataattatttaaatgtttattttgcttaagtttttatcgatgcatgcacatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90829" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="574" r_length="195" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E321257" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTA</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGGTTATAATTATTTAAATGTTTATTTTGCTTAAGTTTTTATCGATGCATGCACATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E305644" ref_strand="+" ref_description="SGN-E305644 [cLEX-14-P11]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90825" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="570" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E305644" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACA</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E330224" ref_strand="+" ref_description="SGN-E330224 [cTOD-4-C6]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccgggtatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattctgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90821" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="566" r_length="187" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E330224" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGGTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTCTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E330761" ref_strand="+" ref_description="SGN-E330761 [cTOD-8-F8]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90821" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="566" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E330761" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E299895" ref_strand="+" ref_description="SGN-E299895 [cLEW-1-F14]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90817" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="562" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E299895" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATG</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E331351" ref_strand="+" ref_description="SGN-E331351 [cTOD-9-K21]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90817" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="562" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E331351" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATG</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E329301" ref_strand="+" ref_description="SGN-E329301 [cTOD-2-E24]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90801" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="546" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E329301" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCT</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E271257" ref_strand="+" ref_description="SGN-E271257 [cLEM-5-B3]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtgtatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90787" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="532" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E271257" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAA</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTGTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E331490" ref_strand="+" ref_description="SGN-E331490 [cTOD-9-O13]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcgggcgaagttgaatcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90729" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="474" r_length="95" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E331490" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAG</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGGCGAAGTTGAATCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E248145" ref_strand="+" ref_description="SGN-E248145 [cLEF-55-I15]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90715" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="460" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E248145" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGA</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E317345" ref_strand="+" ref_description="SGN-E317345 [cTOA-28-K13]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggctactgacggtccgtatggatggatggttcaatatttgtttgttctggccgacggttgaccaagacatggcggatctgatgtgtttgtgtgttcgcttgggatatatgagcataggcgagcatcagatctgttcggacttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattgattccaagatatatgcaaggactatcggctttgttcgttgttgtcatagatccagctcttttgaccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="91002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90702" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="447" r_length="68" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E317345" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGG</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCTACTGACGGTCCGTATGGATGGATGGTTCAATATTTGTTTGTTCTGGCCGACGGTTGACCAAGACATGGCGGATCTGATGTGTTTGTGTGTTCGCTTGGGATATATGAGCATAGGCGAGCATCAGATCTGTTCGGACTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................ATTCCAAGATATATGCAAGGACTATCGGCTTTGTTCGTTGTTGTCATAGATCCAGCTCTTTTGACCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E325372" ref_strand="+" ref_description="SGN-E325372 [cTOC-1-G9]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="90999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90699" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="444" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E325372" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGAC</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E323507" ref_strand="+" ref_description="SGN-E323507 [cTOC-7-G12]">
      <seq>tatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="90961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90533" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90661" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="406" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E323507" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90533"/>
          <exon e_start="90635" e_stop="90661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCG</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E316513" ref_strand="+" ref_description="SGN-E316513 [cTOA-25-C10]">
      <seq>tatcttcttcttttctccacatctcttctaaggagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggatcgatatttgattgatctggccgacggttgacaaagagatggtggatctgatgtgtttgtgcgttcgtttgggatagatgagcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89855" stop="90718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90155" g_stop="90418" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E316513" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90155" e_stop="90418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATA</genome_strand>
        <mrna_strand>TATCTTCTTCTTTTCTCCACATCTCTTCTAAGGAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGATCGATATTTGATTGATCTGGCCGACGGTTGACAAAGAGATGGTGGATCTGATGTGTTTGTGCGTTCGTTTGGGATAGATGAGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E324891" ref_strand="+" ref_description="SGN-E324891 [cTOC-11-D20]">
      <seq>atcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89856" stop="91127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90156" g_stop="90533" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90827" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="571" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E324891" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90156" e_stop="90533"/>
          <exon e_start="90635" e_stop="90827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATG</genome_strand>
        <mrna_strand>ATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E321721" ref_strand="+" ref_description="SGN-E321721 [cTOB-25-O19]">
      <seq>atcttcttgttttctccagatctcttctaagtagtttatcttctccaagttttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaatgactatcggatttgttcgttgatgtcatagatcaagctcttttgaccggttatcatcggcgaatgttgaatcatagaacgttatggtgaatccgaagctatgatggtttaattttgatgcttataattatttgaatgttttatttgcttaagtttttatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89856" stop="91116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90156" g_stop="90533" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90816" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="560" r_length="182" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E321721" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90156" e_stop="90533"/>
          <exon e_start="90635" e_stop="90816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGAT</genome_strand>
        <mrna_strand>ATCTTCTTGTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAGTTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAATGACTATCGGATTTGTTCGTTGATGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAATGTTGAATCATAGAACGTTATGGTGAATCCGAAGCTATGATGGTTTAATTTTGATGCTTATAATTATTTGAATGTTTTATTTGCTTAAGTTTTTATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E306161" ref_strand="+" ref_description="SGN-E306161 [cLEY-13-E15]">
      <seq>atcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcgacctttgagcacactacacttattgggtcgaagatcgttgctaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89856" stop="91014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90156" g_stop="90533" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.84"/>
            <acceptor a_prob="0.985" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90714" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="458" r_length="80" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E306161" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90156" e_stop="90533"/>
          <exon e_start="90635" e_stop="90714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCG</genome_strand>
        <mrna_strand>ATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCGACCTTTGAGCACACTACACTTATTG.....................................................................................................GGTCGAAGATCGTTGCTAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E341230" ref_strand="+" ref_description="SGN-E341230 [cTOE-22-E4]">
      <seq>atcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89856" stop="90798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90156" g_stop="90498" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E341230" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90156" e_stop="90498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCG</genome_strand>
        <mrna_strand>ATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E320525" ref_strand="+" ref_description="SGN-E320525 [cTOB-22-M9]">
      <seq>tcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcangccaaaagacctaataaactatattttttggtgttggagaagaaaggcacaggtttttgcctggatctcctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89857" stop="91318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90157" g_stop="90533" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91018" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="759" r_length="382" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E320525" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90157" e_stop="90533"/>
          <exon e_start="90635" e_stop="91018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCT</genome_strand>
        <mrna_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCANGCCAAAAG-ACCTAAT-AAACTATATTTTTTGGTGTTGGAGAAGAAAGGCACAGGTTTTTGCCTGGATCTCCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E345202" ref_strand="+" ref_description="SGN-E345202 [cTOF-13-I21]">
      <seq>tcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcangccaaaagtacctaataaaactatattttttggtgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89857" stop="91280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90157" g_stop="90533" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90980" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="723" r_length="346" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E345202" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90157" e_stop="90533"/>
          <exon e_start="90635" e_stop="90980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGG</genome_strand>
        <mrna_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCANGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E326802" ref_strand="+" ref_description="SGN-E326802 [cTOC-25-O6]">
      <seq>tcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89857" stop="91129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90157" g_stop="90533" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90829" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="572" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E326802" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90157" e_stop="90533"/>
          <exon e_start="90635" e_stop="90829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTA</genome_strand>
        <mrna_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E202892" ref_strand="+" ref_description="SGN-E202892 [cLEB-1-L3]">
      <seq>gcacgagcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89864" stop="91127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90157" g_stop="90533" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90827" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="570" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E202892" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90157" e_stop="90533"/>
          <exon e_start="90635" e_stop="90827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATG</genome_strand>
        <mrna_strand>GCACGAGCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E314561" ref_strand="+" ref_description="SGN-E314561 [cTOA-20-M21]">
      <seq>tcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaagggtgaatcatagaacgttatggtgaatccnaggttatgatgggttaattttgatgtttataattatttaaatggtttatttgcttaagtttttatcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89857" stop="91117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90157" g_stop="90533" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90817" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="560" r_length="183" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E314561" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90157" e_stop="90533"/>
          <exon e_start="90635" e_stop="90817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATG</genome_strand>
        <mrna_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGGTGAATCATAGAACGTTATGGTGAATCCNAGGTTATGATGGGTTAATTTTGATGTTTATAATTATTTAAATGGTTTATTTGCTTAAGTTTTTATCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E320403" ref_strand="+" ref_description="SGN-E320403 [cTOB-22-M8]">
      <seq>tcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcgggtttgttcgttgttgtcatagatcaagctctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89857" stop="90996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90157" g_stop="90533" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90696" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="439" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E320403" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90157" e_stop="90533"/>
          <exon e_start="90635" e_stop="90696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTT</genome_strand>
        <mrna_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGGTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E281464" ref_strand="+" ref_description="SGN-E281464 [cLEL-1-A24]">
      <seq>gcacgagcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgntcggtcttaatagatttgtggagattggagannnaagtttcagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89864" stop="90767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90157" g_stop="90481" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E281464" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90157" e_stop="90481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGA-AGAAGTTTCAGCAA</genome_strand>
        <mrna_strand>GCACGAGCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGNTCGGTCTTAATAGATTTGTGGAGATTGGAGANNNAAGTTTCAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E278437" ref_strand="+" ref_description="SGN-E278437 [cLEL-2-C7]">
      <seq>gcacgagcttttctgcagatctcttttatgtagtttatcttctgcatattgtgtgatcatatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggtttgatatttgtttgttctggccgactggttgacgaatagatggtggatctgatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89864" stop="90687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90157" g_stop="90387" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E278437" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90157" e_stop="90387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGAC-GGTTGACGAAGAGATGGTGGATCTGATGTG</genome_strand>
        <mrna_strand>GCACGAGCTTTTCTGCAGATCTCTTTTATGTAGTTTATCTTCTGCATATTGTGTGATCATATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTTGATATTTGTTTGTTCTGGCCGACTGGTTGACGAATAGATGGTGGATCTGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E277157" ref_strand="+" ref_description="SGN-E277157 [cLEL-3-N15]">
      <seq>gcacgagcttttctccagatctctactaaggactttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgtcctggatatggatatgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggagactgacggtccgtatggatggatggatcgatatctgttcgttctggccgacggttgacgaacagatggcggatctgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89864" stop="90686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90157" g_stop="90386" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E277157" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90157" e_stop="90386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGT</genome_strand>
        <mrna_strand>GCACGAGCTTTTCTCCAGATCTCTACTAAGGACTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTCCTGGATATGGATATGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGAGACTGACGGTCCGTATGGATGGATGGATCGATATCTGTTCGTTCTGGCCGACGGTTGACGAACAGATGGCGGATCTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E278433" ref_strand="+" ref_description="SGN-E278433 [cLEL-2-A7]">
      <seq>gcacgagcttttctccagatctcttctaagtagtttatcttctccaaatttggtgatcagatctgtgtagatcgttcgctcgatctacgttgtggatatggatttgccgtgttgctgtaccggaccgccgtggttttgtaccggaccggcgactgacggtccgtatggatggatggttcgatatctgttggttctggccgacggttgacgaacagatggcggatctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89864" stop="90685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90157" g_stop="90385" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E278433" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90157" e_stop="90385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTT-GCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATG</genome_strand>
        <mrna_strand>GCACGAGCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTGGTGATCAGATCTGTGTAGATCGTTCGCTCGATCTACGTTGTGGATATGGATTTGCCGTGTTGCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGTCCGTATGGATGGATGGTTCGATATCTGTTGGTTCTGGCCGACGGTTGACGAACAGATGGCGGATCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E277278" ref_strand="+" ref_description="SGN-E277278 [cLEL-3-N1]">
      <seq>gcacgagcttttctccagatctctactaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttcatctacgttttggatatggatttggcgtgtttttgtaccggaccgccgtggttttgtaccggaccggagactgacggtccgtatggatggatggatcgatatctgttcgttctggccgacggttgacgaacagatggtggatctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89864" stop="90685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90157" g_stop="90385" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E277278" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90157" e_stop="90385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATG</genome_strand>
        <mrna_strand>GCACGAGCTTTTCTCCAGATCTCTACTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTCATCTACGTTTTGGATATGGATTTGGCGTGTTTTTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGAGACTGACGGTCCGTATGGATGGATGGATCGATATCTGTTCGTTCTGGCCGACGGTTGACGAACAGATGGTGGATCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E278438" ref_strand="+" ref_description="SGN-E278438 [cLEL-2-C9]">
      <seq>gcacgagcttttctccagatctcttttaagtagtttatcttctccaaattttgtcatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatatgtttgttctggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89864" stop="90654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90157" g_stop="90354" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E278438" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90157" e_stop="90354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCC</genome_strand>
        <mrna_strand>GCACGAGCTTTTCTCCAGATCTCTTTTAAGTAGTTTATCTTCTCCAAATTTTGTCATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATATGTTTGTTCTGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E278434" ref_strand="+" ref_description="SGN-E278434 [cLEL-2-A21]">
      <seq>gcacgagcttttctccagatctcttttatgtagtttatcttctccaaatggtgtgatcagatctgtgtagatcgttgactgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggatcggagactgacgggtcgtatggatggatggatcgatatttgtttgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89864" stop="90649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90157" g_stop="90349" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E278434" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90157" e_stop="90349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTC</genome_strand>
        <mrna_strand>GCACGAGCTTTTCTCCAGATCTCTTTTATGTAGTTTATCTTCTCCAAATGGTGTGATCAGATCTGTGTAGATCGTTGACTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGATCGGAGACTGACGGGTCGTATGGATGGATGGATCGATATTTGTTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E737657" ref_strand="+" ref_description="SGN-E737657 [LC10DA02]">
      <seq>cttcgtcttttctccagatctctctctggttgtttatcttcttcaaatttcatgatcagatctgtgtagatcgttccttgatctacgttttggttatggatttgccgtgtttctgtaccggaccgccgtggttttgtgccggaccggctactgacgggccgtatggattgatgggtcgatgtttgtttgatctggccgacggttgacgacgagatggcggatctgatgtctttttgtgctggtttgaggtagatgagcataatcgagcatcagatctgttcggtcttcatagatttgtggagattggagcagaagtttcagcaaccgtgatgttatcctttcgagggttcaaccgttgttcggaagagatttattggtttgaagatagatgcaaggactatcggtttggtgccttgttgtcatagatcaggctcttttgaccggttatcatcggccgaaggttgaatcagagaacgttatggtgatccaaggttatgatggtctaattttgatgtttataattatttaaatgttttatttgcttcagtttttattgatgcatgcacatgtacgagagataaaagaacgagttgaggttgtgcgaggtatgagaggaaaaagtgaggtgtttattgttttatgttatcaggcctttgccatgttgggtgcgctcgcttggcaggccaaaagtacctaataaaactatattctttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgttgcatcctttttattttttcatgctctttccctgctcctgcgtctacaaatctcgcaccgatccagtggttacttgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89858" stop="91404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90158" g_stop="90533" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.88"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91105" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="848" r_length="472" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E737657" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90158" e_stop="90533"/>
          <exon e_start="90635" e_stop="91105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGG-CGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCT-C-TTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTT</genome_strand>
        <mrna_strand>CTTCGTCTTTTCTCCAGATCTCTCTCTGGTTGTTTATCTTCTTCAAATTTCATGATCAGATCTGTGTAGATCGTTCCTTGATCTACGTTTTGGTTATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTGCCGGACCGGCTACTGACGGGCCGTATGGATTGATGGGTCGATGTTTGTTTGATCTGGCCGACGGTTGACGACGAGATGGCGGATCTGATGTCTTTTTGTGCTGGTTTGAGGTAGATGAGCATAATCGAGCATCAGATCTGTTCGGTCTTCATAGATTTGTGGAGATTGGAGCAGAAGTTTCAGCAACCGTGATGTTATCCTTTCGAGGGTTCAACCGTTGTTCGGAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTGGTGCCTTGTTGTCATAGATCAGGCTCTTTTGACCGGTTATCATCGGCCGAAGGTTGAATCAGAGAACGTTATGGTG-ATCCAAGGTTATGATGGTCTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTCAGTTTTTATTGATGCATGCACATGTACGAGAGATAAAAGAACGAGTTGAGGTTGTGCGAGGTATGAGAGG-AAAAAGTGAGGTGTTTATTGTTTTATGTTATCAGGCCTTTGCCATGTTGGGTGCGCTCGCTTGGCAGGCCAAAAGTACCTAATAAAACTATATTCTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTTGCATCCTTTTTATTTTTTCATGCTCTTTCCCTGCTCCTGCGTCTACAAATCTCGCACCGATCCAGTGGTTACTTGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E328398" ref_strand="+" ref_description="SGN-E328398 [cTOC-21-D11]">
      <seq>cttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctataaaactatatttttttgtgttggagagganaagcacagggtttttgctggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89858" stop="91310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90158" g_stop="90533" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91010" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="751" r_length="375" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E328398" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90158" e_stop="90533"/>
          <exon e_start="90635" e_stop="91010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATC</genome_strand>
        <mrna_strand>CTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCT-ATAAAACTATATTTTTTTGTGTTGGAGAGGANAAGCACAGGGTTTTTGCTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E329054" ref_strand="+" ref_description="SGN-E329054 [cTOC-24-M24]">
      <seq>cttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89858" stop="91256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90158" g_stop="90533" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90956" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="698" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E329054" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90158" e_stop="90533"/>
          <exon e_start="90635" e_stop="90956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAA</genome_strand>
        <mrna_strand>CTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E328919" ref_strand="+" ref_description="SGN-E328919 [cTOC-24-L17]">
      <seq>cttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89858" stop="91121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90158" g_stop="90533" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90821" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="563" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E328919" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90158" e_stop="90533"/>
          <exon e_start="90635" e_stop="90821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</genome_strand>
        <mrna_strand>CTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E331571" ref_strand="+" ref_description="SGN-E331571 [cTOD-9-B12]">
      <seq>cttcttcttttctccagatctcttctaagtagtttatcgtctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89858" stop="91013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90158" g_stop="90533" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90713" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="455" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E331571" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90158" e_stop="90533"/>
          <exon e_start="90635" e_stop="90713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGC</genome_strand>
        <mrna_strand>CTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCGTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E314794" ref_strand="+" ref_description="SGN-E314794 [cTOA-20-H21]">
      <seq>ttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaactatattttttggtgttggagagagaagcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatggtctttccctgctcctgcgtccacaatctcgcaccgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89859" stop="91387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90159" g_stop="90533" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91087" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="824" r_length="449" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E314794" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90159" e_stop="90533"/>
          <exon e_start="90635" e_stop="91087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATC</genome_strand>
        <mrna_strand>TTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGG-AAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAAT-AAACTATATTTTTTGGTGTTGGAGA-GAGAAGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGGTCTTTCCCTGCTCCTGCGTCC-ACAATCTCGCACCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E317203" ref_strand="+" ref_description="SGN-E317203 [cTOA-28-O23]">
      <seq>ttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaactatattttttggtgttggagaganaggcacanggttttgcctggatctcctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89859" stop="91318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90159" g_stop="90533" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91018" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="757" r_length="382" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E317203" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90159" e_stop="90533"/>
          <exon e_start="90635" e_stop="91018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCT</genome_strand>
        <mrna_strand>TTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAAT-AAACTATATTTTTTGGTGTTGGAGA-GANAGGCACANGGTTTTGCCTGGATCTCCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E314820" ref_strand="+" ref_description="SGN-E314820 [cTOA-20-P21]">
      <seq>ttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89859" stop="91209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90159" g_stop="90533" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90909" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="650" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E314820" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90159" e_stop="90533"/>
          <exon e_start="90635" e_stop="90909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGG</genome_strand>
        <mrna_strand>TTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E329352" ref_strand="+" ref_description="SGN-E329352 [cTOD-2-C9]">
      <seq>ttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89859" stop="91152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90159" g_stop="90533" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90852" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="593" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E329352" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90159" e_stop="90533"/>
          <exon e_start="90635" e_stop="90852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGA</genome_strand>
        <mrna_strand>TTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E330518" ref_strand="+" ref_description="SGN-E330518 [cTOD-4-P8]">
      <seq>ttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89859" stop="91149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90159" g_stop="90533" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90849" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="590" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E330518" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90159" e_stop="90533"/>
          <exon e_start="90635" e_stop="90849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGT</genome_strand>
        <mrna_strand>TTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E313935" ref_strand="+" ref_description="SGN-E313935 [cTOA-19-I1]">
      <seq>ttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89859" stop="91121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90159" g_stop="90533" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90821" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="562" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E313935" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90159" e_stop="90533"/>
          <exon e_start="90635" e_stop="90821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</genome_strand>
        <mrna_strand>TTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E307252" ref_strand="+" ref_description="SGN-E307252 [cLEY-12-I19]">
      <seq>ttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89859" stop="90835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90159" g_stop="90533" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90639" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="380" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E307252" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90159" e_stop="90533"/>
          <exon e_start="90635" e_stop="90639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTG</genome_strand>
        <mrna_strand>TTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E301114" ref_strand="+" ref_description="SGN-E301114 [cLEW-22-E13]">
      <seq>tttttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89859" stop="90809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90159" g_stop="90509" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E301114" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90159" e_stop="90509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAA</genome_strand>
        <mrna_strand>TTTTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E326627" ref_strand="+" ref_description="SGN-E326627 [cTOC-17-O19]">
      <seq>tcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaactatattttttggtgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89860" stop="91280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90160" g_stop="90533" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90980" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="718" r_length="344" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E326627" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90160" e_stop="90533"/>
          <exon e_start="90635" e_stop="90980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGG</genome_strand>
        <mrna_strand>TCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGG-AAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAAT-AAACTATATTTTTTGGTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E337809" ref_strand="+" ref_description="SGN-E337809 [cTOE-17-F12]">
      <seq>tcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89860" stop="91135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90160" g_stop="90533" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90835" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="575" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E337809" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90160" e_stop="90533"/>
          <exon e_start="90635" e_stop="90835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAG</genome_strand>
        <mrna_strand>TCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E341422" ref_strand="+" ref_description="SGN-E341422 [cTOE-23-F16]">
      <seq>tcttcttttctcctgatctcttctaagtagtttatcttctccagggtttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaagttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89860" stop="91121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90160" g_stop="90533" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90821" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="561" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E341422" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90160" e_stop="90533"/>
          <exon e_start="90635" e_stop="90821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</genome_strand>
        <mrna_strand>TCTTCTTTTCTCCTGATCTCTTCTAAGTAGTTTATCTTCTCCAGGGTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAAGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E273296" ref_strand="+" ref_description="SGN-E273296 [cLEM-24-H14]">
      <seq>gcttcttttctcccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtacccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89861" stop="91117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90160" g_stop="90533" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90817" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="559" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E273296" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90160" e_stop="90533"/>
          <exon e_start="90635" e_stop="90817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTTTCTC-CAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTA-CCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATG</genome_strand>
        <mrna_strand>GCTTCTTTTCTCCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E343773" ref_strand="+" ref_description="SGN-E343773 [cTOF-12-C5]">
      <seq>cttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgnttgggtgcgctcgcatggcangccaaaagtacctaataaaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89861" stop="91265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90161" g_stop="90533" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90965" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="705" r_length="332" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E343773" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90161" e_stop="90533"/>
          <exon e_start="90635" e_stop="90965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATG-TTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTAT</genome_strand>
        <mrna_strand>CTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGNTTGGGTGCGCTCGCATGGCANGCCAAAAGTACCTAATAAAACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E334232" ref_strand="+" ref_description="SGN-E334232 [cTOD-21-J20]">
      <seq>ttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcangccaaaagtacctaataaactatatttttttggtgttggagaagaaaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttatttttcatggtctttccctgctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89862" stop="91363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90162" g_stop="90533" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91063" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="800" r_length="428" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E334232" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90162" e_stop="90533"/>
          <exon e_start="90635" e_stop="91063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATA-TTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCT</genome_strand>
        <mrna_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCANGCCAAAAGTACCTAAT-AAACTATATTTTTTTGGTGTTGGAGAAGAAAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTA-TTTTTCATGGTCTTTCCCTGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E334233" ref_strand="+" ref_description="SGN-E334233 [cTOD-21-J22]">
      <seq>ttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaagtgaggtgtttactgttttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89862" stop="91201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90162" g_stop="90533" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90901" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="638" r_length="266" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E334233" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90162" e_stop="90533"/>
          <exon e_start="90635" e_stop="90901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATG</genome_strand>
        <mrna_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGG-AAAAAGTGAGGTGTTTACTGTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E349039" ref_strand="+" ref_description="SGN-E349039 [cTOF-29-L14]">
      <seq>ttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89862" stop="91175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90162" g_stop="90533" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90875" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="613" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E349039" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90162" e_stop="90533"/>
          <exon e_start="90635" e_stop="90875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAA</genome_strand>
        <mrna_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E314062" ref_strand="+" ref_description="SGN-E314062 [cTOA-19-A20]">
      <seq>ttcttttcttcagatctcttctaagtagtttagcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagacctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgttcgagagataaaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89862" stop="91145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90162" g_stop="90533" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90845" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="583" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E314062" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90162" e_stop="90533"/>
          <exon e_start="90635" e_stop="90845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAAT</genome_strand>
        <mrna_strand>TTCTTTTCTTCAGATCTCTTCTAAGTAGTTTAGCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGACCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTTCGAGAGATAAAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E307141" ref_strand="+" ref_description="SGN-E307141 [cLEY-15-K11]">
      <seq>ttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89862" stop="91132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90162" g_stop="90533" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90832" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="570" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E307141" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90162" e_stop="90533"/>
          <exon e_start="90635" e_stop="90832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGA</genome_strand>
        <mrna_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E314293" ref_strand="+" ref_description="SGN-E314293 [cTOA-21-O17]">
      <seq>ttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatggtttatttgcttaagtttttatcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89862" stop="91117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90162" g_stop="90533" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90817" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="555" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E314293" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90162" e_stop="90533"/>
          <exon e_start="90635" e_stop="90817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATG</genome_strand>
        <mrna_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGGTTTATTTGCTTAAGTTTTTATCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E329359" ref_strand="+" ref_description="SGN-E329359 [cTOD-2-I3]">
      <seq>ttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaacgttatgatggtttaattttgatgtttataattatttaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89862" stop="91089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90162" g_stop="90533" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90789" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="527" r_length="155" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E329359" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90162" e_stop="90533"/>
          <exon e_start="90635" e_stop="90789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAAT</genome_strand>
        <mrna_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAACGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E324685" ref_strand="+" ref_description="SGN-E324685 [cTOC-8-E21]">
      <seq>ttcttttctccagatctcttctaagtagtttatcttctgcaaattttgtgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89862" stop="91036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90162" g_stop="90533" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90736" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="474" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E324685" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90162" e_stop="90533"/>
          <exon e_start="90635" e_stop="90736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTA</genome_strand>
        <mrna_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTGCAAATTTTGTGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E300983" ref_strand="+" ref_description="SGN-E300983 [cLEW-8-J20]">
      <seq>ttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttggcatagatcaagctcttttgaccggttatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89862" stop="91009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90162" g_stop="90533" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90709" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="447" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E300983" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90162" e_stop="90533"/>
          <exon e_start="90635" e_stop="90709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCAT</genome_strand>
        <mrna_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGGCATAGATCAAGCTCTTTTGACCGGTTATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E299857" ref_strand="+" ref_description="SGN-E299857 [cLEW-1-G6]">
      <seq>ttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcggttgggatagatgagcatagtcgagcatcagatctgtgcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcggtgctgtcatagatcaagctcttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89862" stop="90999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90162" g_stop="90533" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90699" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="437" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E299857" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90162" e_stop="90533"/>
          <exon e_start="90635" e_stop="90699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGAC</genome_strand>
        <mrna_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGGTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTGCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGGTGCTGTCATAGATCAAGCTCTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E245112" ref_strand="+" ref_description="SGN-E245112 [cLEF-13-B16]">
      <seq>ttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgctgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgctagtgtgttcgtttgggatagatgagcatagtctagcatcatatctgtgcggtcttaatagatatgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaggagatttattggtttgaagatagatgcaaggactatcggttatgttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89862" stop="90971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90162" g_stop="90533" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90671" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="409" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E245112" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90162" e_stop="90533"/>
          <exon e_start="90635" e_stop="90671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCG</genome_strand>
        <mrna_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGCTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGCTAGTGTGTTCGTTTGGGATAGATGAGCATAGTCTAGCATCATATCTGTGCGGTCTTAATAGATATGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAGGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTATGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E335902" ref_strand="+" ref_description="SGN-E335902 [cTOE-6-N24]">
      <seq>ttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89862" stop="90960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90162" g_stop="90533" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90660" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="398" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E335902" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90162" e_stop="90533"/>
          <exon e_start="90635" e_stop="90660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATC</genome_strand>
        <mrna_strand>TTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E297440" ref_strand="+" ref_description="SGN-E297440 [cLEW-13-D3]">
      <seq>tcttttcttctgatctcttctaagtagtttatctgggccgaattttatgatcagatctgtgtacatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaagttgaatcatagaacgttatggtgaatccaaagttatgatggtttaattttgatgtttattattatttaaatgttttatttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89863" stop="91101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90163" g_stop="90533" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90801" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="538" r_length="167" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E297440" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90163" e_stop="90533"/>
          <exon e_start="90635" e_stop="90801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCT</genome_strand>
        <mrna_strand>TCTTTTCTTCTGATCTCTTCTAAGTAGTTTATCTGGGCCGAATTTTATGATCAGATCTGTGTACATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAAGTTGAATCATAGAACGTTATGGTGAATCCAAAGTTATGATGGTTTAATTTTGATGTTTATTATTATTTAAATGTTTTATTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E297415" ref_strand="+" ref_description="SGN-E297415 [cLEW-13-D13]">
      <seq>tcttttcttcagatctcttctaagtagtttatcttgtccgaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89863" stop="91037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90163" g_stop="90533" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90737" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="474" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E297415" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90163" e_stop="90533"/>
          <exon e_start="90635" e_stop="90737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTAT</genome_strand>
        <mrna_strand>TCTTTTCTTCAGATCTCTTCTAAGTAGTTTATCTTGTCCGAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E298206" ref_strand="+" ref_description="SGN-E298206 [cLEW-9-O3]">
      <seq>tcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgaccgttgaccaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcgggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89863" stop="90966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90163" g_stop="90533" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90666" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="403" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E298206" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90163" e_stop="90533"/>
          <exon e_start="90635" e_stop="90666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTT</genome_strand>
        <mrna_strand>TCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACCGTTGACCAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E320269" ref_strand="+" ref_description="SGN-E320269 [cTOB-21-J3]">
      <seq>ttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaagtgangtgtttactgttttatgttngcaggcctttgccatggtgcgtgcgctcgcatggncagccaaaagtacctaataaaactatattttttggtgttggagaagancagcacaggnttttgcctggatctcctctctgtgtgtgtcgcctcttttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89865" stop="91340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90165" g_stop="90533" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91040" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="774" r_length="405" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E320269" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90165" e_stop="90533"/>
          <exon e_start="90635" e_stop="91040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTT</genome_strand>
        <mrna_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGG-AAAAAGTGANGTGTTTACTGTTTTATGTTNGCAGGCCTTTGCCATGGTGCGTGCGCTCGCATGGNCAGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAAGANCAGCACAGGNTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E252177" ref_strand="+" ref_description="SGN-E252177 [cLEG-8-J7]">
      <seq>ttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagaatttattttttggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89865" stop="91150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90165" g_stop="90537" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90538" i_stop="90634" i_length="97">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90850" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="590" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E252177" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90165" e_stop="90537"/>
          <exon e_start="90635" e_stop="90850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAG-ATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTT</genome_strand>
        <mrna_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGAATTTATTTTTTG.................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E315989" ref_strand="+" ref_description="SGN-E315989 [cTOA-23-G15]">
      <seq>ttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89865" stop="91146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90165" g_stop="90533" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90846" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="581" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E315989" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90165" e_stop="90533"/>
          <exon e_start="90635" e_stop="90846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATG</genome_strand>
        <mrna_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E246928" ref_strand="+" ref_description="SGN-E246928 [cLEF-41-H6]">
      <seq>ttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89865" stop="91127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90165" g_stop="90533" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90827" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="562" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E246928" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90165" e_stop="90533"/>
          <exon e_start="90635" e_stop="90827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATG</genome_strand>
        <mrna_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E325323" ref_strand="+" ref_description="SGN-E325323 [cTOC-1-B12]">
      <seq>ttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89865" stop="91127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90165" g_stop="90533" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90827" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="562" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E325323" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90165" e_stop="90533"/>
          <exon e_start="90635" e_stop="90827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATG</genome_strand>
        <mrna_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E250583" ref_strand="+" ref_description="SGN-E250583 [cLEG-7-C19]">
      <seq>ttttctccagatctcttctaagttgtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcacggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggctatcatctgcgaaggttgaatcatagaacgttatggcgaatccaaggttatgatggtttaattttgatgtttataatcatttaaatgttttatttgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89865" stop="91103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90165" g_stop="90533" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90803" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="538" r_length="169" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E250583" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90165" e_stop="90533"/>
          <exon e_start="90635" e_stop="90803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTA</genome_strand>
        <mrna_strand>TTTTCTCCAGATCTCTTCTAAGTTGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCACGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGCTATCATCTGCGAAGGTTGAATCATAGAACGTTATGGCGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATCATTTAAATGTTTTATTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E319612" ref_strand="+" ref_description="SGN-E319612 [cTOB-12-A21]">
      <seq>ttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattgtgatgtgtataattatttaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89865" stop="91089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90165" g_stop="90533" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90789" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="524" r_length="155" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E319612" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90165" e_stop="90533"/>
          <exon e_start="90635" e_stop="90789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAAT</genome_strand>
        <mrna_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTGTGATGTGTATAATTATTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E250734" ref_strand="+" ref_description="SGN-E250734 [cLEG-7-D11]">
      <seq>ttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89865" stop="91014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90165" g_stop="90533" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90714" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="449" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E250734" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90165" e_stop="90533"/>
          <exon e_start="90635" e_stop="90714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCG</genome_strand>
        <mrna_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E306183" ref_strand="+" ref_description="SGN-E306183 [cLEY-13-O17]">
      <seq>ttttctccagatctcttctaagtagtttatgttctccaaattgtatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcggtgttgtcataaatcaagctcttttgaccggttatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89865" stop="91010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90165" g_stop="90533" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90710" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="445" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E306183" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90165" e_stop="90533"/>
          <exon e_start="90635" e_stop="90710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATC</genome_strand>
        <mrna_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATGTTCTCCAAATTGTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGGTGTTGTCATAAATCAAGCTCTTTTGACCGGTTATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E338279" ref_strand="+" ref_description="SGN-E338279 [cTOE-13-M4]">
      <seq>ttttctccagatctcttctaagtagtttatcttctgcaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtatatgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggcccacggctgacaaagagatggtggatctgatgtgtttgtgtgttcgttagggatagatgagcatcgtcgatcatcagatctgtgcggacttaatagattcgtggtgataggagaataactttcagcaaccttgatgttatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89865" stop="90795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90165" g_stop="90495" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E338279" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90165" e_stop="90495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCA</genome_strand>
        <mrna_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTGCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTATATGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCCACGGCTGACAAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTAGGGATAGATGAGCATCGTCGATCATCAGATCTGTGCGGACTTAATAGATTCGTGGTGATAGGAGAATAACTTTCAGCAACCTTGATGTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E284099" ref_strand="+" ref_description="SGN-E284099 [cLER-13-D17]">
      <seq>ttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgcgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89865" stop="90687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90165" g_stop="90387" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E284099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90165" e_stop="90387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTG</genome_strand>
        <mrna_strand>TTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E300811" ref_strand="+" ref_description="SGN-E300811 [cLEW-8-G6]">
      <seq>tccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcgggtttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgattataattatttaaatgttttatttgcttaagatgttatcgatgcatgcacatgttcgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89870" stop="91135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90170" g_stop="90533" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90835" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="565" r_length="201" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E300811" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90170" e_stop="90533"/>
          <exon e_start="90635" e_stop="90835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAG</genome_strand>
        <mrna_strand>TCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGGTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGATTATAATTATTTAAATGTTTTATTTGCTTAAGATGTTATCGATGCATGCACATGTTCGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E702287" ref_strand="+" ref_description="SGN-E702287 [FA18BC05]">
      <seq>cacatctctctctggttgtttatcttcttcaaatttcatgatcagatctgtgtagatcgttccttgatctacgttttggttatggatttgccgtgtttctgtaccggaccgccgtggttttgtgccggaccggctactgacgggccgtatggattgatgggtcgatgtttgtttgatctggccgacggttgacgacgagatggcggatctgatgtctttttgtgctggtttgaggtagatgagcataatcgagcatcagatctgttcggtcttcatagatttgtggagattggagcagaagtttcagcaaccgtgatgttatcctttcgagggttcaaccgttgttcggaagagatttattggtttgaagatagatgcaaggactatcggtttggtgccttgttgtcatagatcaggctcttttgaccggttatcatcggccgaaggttgaatcagagaacgttatggtgatccaaggttatgatggtctaattttgatgtttataattatttaaatgttttatttgcttcagtttttattgatgcatgcacatgtacgagagataaaagaacgagttgaggttgtgcgaggtatgagaggaaaaagtgaggtgtttattgttttatgttatcaggcctttgccatgttgggtgcgctcgcttggcaggccaaaagtacctaataaaactatattctttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgttgcatcctttttattttttcatgctctttccctgctcctgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89886" stop="91367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90172" g_stop="90533" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.88"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91067" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="796" r_length="434" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E702287" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90172" e_stop="90533"/>
          <exon e_start="90635" e_stop="91067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGG-CGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCT-C-TTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGT</genome_strand>
        <mrna_strand>CACATCTCTCTCTGGTTGTTTATCTTCTTCAAATTTCATGATCAGATCTGTGTAGATCGTTCCTTGATCTACGTTTTGGTTATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTGCCGGACCGGCTACTGACGGGCCGTATGGATTGATGGGTCGATGTTTGTTTGATCTGGCCGACGGTTGACGACGAGATGGCGGATCTGATGTCTTTTTGTGCTGGTTTGAGGTAGATGAGCATAATCGAGCATCAGATCTGTTCGGTCTTCATAGATTTGTGGAGATTGGAGCAGAAGTTTCAGCAACCGTGATGTTATCCTTTCGAGGGTTCAACCGTTGTTCGGAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTGGTGCCTTGTTGTCATAGATCAGGCTCTTTTGACCGGTTATCATCGGCCGAAGGTTGAATCAGAGAACGTTATGGTG-ATCCAAGGTTATGATGGTCTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTCAGTTTTTATTGATGCATGCACATGTACGAGAGATAAAAGAACGAGTTGAGGTTGTGCGAGGTATGAGAGG-AAAAAGTGAGGTGTTTATTGTTTTATGTTATCAGGCCTTTGCCATGTTGGGTGCGCTCGCTTGGCAGGCCAAAAGTACCTAATAAAACTATATTCTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTTGCATCCTTTTTATTTTTTCATGCTCTTTCCCTGCTCCTGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E330970" ref_strand="+" ref_description="SGN-E330970 [cTOD-10-P13]">
      <seq>cagatctcttctaagtagttgatcttggggcaaattttatgatcagatctgtgtacatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89872" stop="90849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90172" g_stop="90533" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90649" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="378" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E330970" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90172" e_stop="90533"/>
          <exon e_start="90635" e_stop="90649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTCTTCTAAGTAGTTTATCTT-CTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATG</genome_strand>
        <mrna_strand>CAGATCTCTTCTAAGTAGTTGATCTTGGGGCAAATTTTATGATCAGATCTGTGTACATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E298171" ref_strand="+" ref_description="SGN-E298171 [cLEW-9-M24]">
      <seq>atctcttctaagtagtttatcttctgcaaatttgatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgcggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatattcgtttgttctggccgaccgttgacaaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcatatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgccagggttcaaccgttgtgcgcaagaaatttattggtttgaagatagatgcatggactatcgggtttgttcgttgttgtcataaatcaagctcttttgaccggttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89875" stop="91006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90175" g_stop="90533" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="431" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E298171" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90175" e_stop="90533"/>
          <exon e_start="90635" e_stop="90706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTAT</genome_strand>
        <mrna_strand>ATCTCTTCTAAGTAGTTTATCTTCTGCAAATTTGATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGCGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTCGTTTGTTCTGGCCGACCGTTGACAAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCATATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCCAGGGTTCAACCGTTGTGCGCAAGAAATTTATTG.....................................................................................................GTTTGAAGATAGATGCATGGACTATCGGGTTTGTTCGTTGTTGTCATAAATCAAGCTCTTTTGACCGGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E318575" ref_strand="+" ref_description="SGN-E318575 [cTOB-9-I21]">
      <seq>tctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89876" stop="91149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90176" g_stop="90533" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90849" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="573" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E318575" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90176" e_stop="90533"/>
          <exon e_start="90635" e_stop="90849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGT</genome_strand>
        <mrna_strand>TCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E324291" ref_strand="+" ref_description="SGN-E324291 [cTOC-4-B14]">
      <seq>tctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89876" stop="91087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90176" g_stop="90533" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90787" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="511" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E324291" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90176" e_stop="90533"/>
          <exon e_start="90635" e_stop="90787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAA</genome_strand>
        <mrna_strand>TCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E270167" ref_strand="+" ref_description="SGN-E270167 [cLEM-7-N24]">
      <seq>tctcttctaagtagtttatcttctccaaattttatgatcagagctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89876" stop="91038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90176" g_stop="90533" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90738" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="462" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E270167" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90176" e_stop="90533"/>
          <exon e_start="90635" e_stop="90738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATG</genome_strand>
        <mrna_strand>TCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGAGCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E311650" ref_strand="+" ref_description="SGN-E311650 [cLEZ-9-B17]">
      <seq>tctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaaaagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89876" stop="91015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90176" g_stop="90533" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90715" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="439" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E311650" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90176" e_stop="90533"/>
          <exon e_start="90635" e_stop="90715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGA</genome_strand>
        <mrna_strand>TCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAAAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E338314" ref_strand="+" ref_description="SGN-E338314 [cTOE-13-J23]">
      <seq>tctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcataatcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89876" stop="90797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90176" g_stop="90497" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E338314" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90176" e_stop="90497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATC</genome_strand>
        <mrna_strand>TCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAATCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E314982" ref_strand="+" ref_description="SGN-E314982 [cTOA-31-G24]">
      <seq>ttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89880" stop="91255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90180" g_stop="90533" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90951" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="671" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E314982" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90180" e_stop="90533"/>
          <exon e_start="90635" e_stop="90951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTA</genome_strand>
        <mrna_strand>TTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E328870" ref_strand="+" ref_description="SGN-E328870 [cTOC-24-E14]">
      <seq>ttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89880" stop="91201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90180" g_stop="90533" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90901" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="621" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E328870" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90180" e_stop="90533"/>
          <exon e_start="90635" e_stop="90901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATG</genome_strand>
        <mrna_strand>TTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E336944" ref_strand="+" ref_description="SGN-E336944 [cTOE-5-O7]">
      <seq>ttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttggttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttggtcggcgttgtcatagatcaagctcttttgaccgggtatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaagttatgatgggttaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89880" stop="91069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90180" g_stop="90533" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90769" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="489" r_length="135" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E336944" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90180" e_stop="90533"/>
          <exon e_start="90635" e_stop="90769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTG</genome_strand>
        <mrna_strand>TTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGGTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGGTCGGCGTTGTCATAGATCAAGCTCTTTTGACCGGGTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAAGTTATGATGGGTTAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E394595" ref_strand="+" ref_description="SGN-E394595 [TUS-40-D22]">
      <seq>ttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggcccacggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89880" stop="90661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90180" g_stop="90361" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E394595" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>182</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90180" e_stop="90361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTT</genome_strand>
        <mrna_strand>TTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCCACGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E313189" ref_strand="+" ref_description="SGN-E313189 [cTOA-18-J21]">
      <seq>tctaagtagtttatctttttcttattttatgatcagatctgtgtatatcggtggttgatctacgttttgggtatggatttcccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggctatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89881" stop="91127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90181" g_stop="90533" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90827" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="546" r_length="193" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E313189" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90181" e_stop="90533"/>
          <exon e_start="90635" e_stop="90827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATG</genome_strand>
        <mrna_strand>TCTAAGTAGTTTATCTTTTTCTTATTTTATGATCAGATCTGTGTATATCGGTGGTTGATCTACGTTTTGGGTATGGATTTCCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGCTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E331642" ref_strand="+" ref_description="SGN-E331642 [cTOD-7-O7]">
      <seq>tctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89881" stop="90849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90181" g_stop="90533" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90649" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="368" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E331642" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90181" e_stop="90533"/>
          <exon e_start="90635" e_stop="90649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATG</genome_strand>
        <mrna_strand>TCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E315536" ref_strand="+" ref_description="SGN-E315536 [cTOA-22-G11]">
      <seq>ctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89882" stop="91117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90182" g_stop="90533" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90817" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="535" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E315536" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90182" e_stop="90533"/>
          <exon e_start="90635" e_stop="90817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATG</genome_strand>
        <mrna_strand>CTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E314452" ref_strand="+" ref_description="SGN-E314452 [cTOB-1-C21]">
      <seq>taagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89883" stop="90999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90183" g_stop="90533" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90699" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="416" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E314452" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90183" e_stop="90533"/>
          <exon e_start="90635" e_stop="90699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGAC</genome_strand>
        <mrna_strand>TAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E542111" ref_strand="+" ref_description="SGN-E542111 [TUS-63-D24]">
      <seq>gagggtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggccttttgcatgttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89889" stop="91225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90184" g_stop="90533" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90925" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="640" r_length="291" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E542111" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90184" e_stop="90533"/>
          <exon e_start="90635" e_stop="90925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGG</genome_strand>
        <mrna_strand>GAG-GGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTTGCATGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E300001" ref_strand="+" ref_description="SGN-E300001 [cLEW-11-D17]">
      <seq>agggtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89889" stop="90804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90185" g_stop="90504" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E300001" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90185" e_stop="90504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGG</genome_strand>
        <mrna_strand>AG-GGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E200117" ref_strand="+" ref_description="SGN-E200117 [cLEB-7-H15]">
      <seq>gcacgagatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89893" stop="90972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90186" g_stop="90533" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90672" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="386" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E200117" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90186" e_stop="90533"/>
          <exon e_start="90635" e_stop="90672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGT</genome_strand>
        <mrna_strand>GCACGAGATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E338388" ref_strand="+" ref_description="SGN-E338388 [cTOE-15-E5]">
      <seq>tttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcatcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgctgttgtcatagatcaagctcttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89890" stop="90999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90190" g_stop="90533" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90699" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="409" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E338388" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90190" e_stop="90533"/>
          <exon e_start="90635" e_stop="90699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGAC</genome_strand>
        <mrna_strand>TTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCATCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGCTGTTGTCATAGATCAAGCTCTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E321567" ref_strand="+" ref_description="SGN-E321567 [cTOB-25-K7]">
      <seq>ttatcttctccaaattttatgatcagatctgtgtagatctttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89891" stop="90976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90191" g_stop="90533" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90676" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="385" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E321567" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90191" e_stop="90533"/>
          <exon e_start="90635" e_stop="90676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTT</genome_strand>
        <mrna_strand>TTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCTTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E250637" ref_strand="+" ref_description="SGN-E250637 [cLEG-7-D21]">
      <seq>atcttctccaaattttattatcagaggtgtgttgatcgttgcttgatctaccttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatattcgtttgttctggcccacggttgacgaaaagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcaaatctgttcggtcttaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89893" stop="90748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90193" g_stop="90448" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E250637" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90193" e_stop="90448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATA</genome_strand>
        <mrna_strand>ATCTTCTCCAAATTTTATTATCAGAGGTGTGTTGATCGTTGCTTGATCTACCTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTCGTTTGTTCTGGCCCACGGTTGACGAAAAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAAATCTGTTCGGTCTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E333769" ref_strand="+" ref_description="SGN-E333769 [cTOD-22-F15]">
      <seq>tcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaagagaagcacagggttttgcctggatctcctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89894" stop="91318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90194" g_stop="90533" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91018" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="724" r_length="384" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E333769" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90194" e_stop="90533"/>
          <exon e_start="90635" e_stop="91018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCT</genome_strand>
        <mrna_strand>TCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAAGAGAAGCACAGGGTTTTGCCTGGATCTCCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E214274" ref_strand="+" ref_description="SGN-E214274 [cLEC-77-P11]">
      <seq>tcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89894" stop="91131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90194" g_stop="90533" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90831" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="537" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E214274" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90194" e_stop="90533"/>
          <exon e_start="90635" e_stop="90831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACG</genome_strand>
        <mrna_strand>TCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E329242" ref_strand="+" ref_description="SGN-E329242 [cTOD-2-M14]">
      <seq>ttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttgtggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89896" stop="91121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90196" g_stop="90533" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90821" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="525" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E329242" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90196" e_stop="90533"/>
          <exon e_start="90635" e_stop="90821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</genome_strand>
        <mrna_strand>TTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTGTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E317177" ref_strand="+" ref_description="SGN-E317177 [cTOA-28-G5]">
      <seq>ccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatattcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcgaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggatttgaagatagatgcaaggactatcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89900" stop="90962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90200" g_stop="90533" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90662" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="363" r_length="29" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E317177" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90200" e_stop="90533"/>
          <exon e_start="90635" e_stop="90662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGG-TTTGAAGATAGATGCAAGGACTATCGG</genome_strand>
        <mrna_strand>CCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATATTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCGACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GATTTGAAGATAGATGCAAGGACTATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E330783" ref_strand="+" ref_description="SGN-E330783 [cTOD-8-N8]">
      <seq>caaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatgggttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89901" stop="91151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90201" g_stop="90533" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90851" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="550" r_length="217" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E330783" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90201" e_stop="90533"/>
          <exon e_start="90635" e_stop="90851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTG</genome_strand>
        <mrna_strand>CAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGGTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E335189" ref_strand="+" ref_description="SGN-E335189 [cTOE-1-H16]">
      <seq>ctgtgtagctcgttgcttgatctaccgttttggatattggattttgccgtgtttctgtacccggaccgcccgtggttttgtacccggaccggcgacctgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttatttgtttgaagatagatgcaaggactatcggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89919" stop="90966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90219" g_stop="90533" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90666" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="354" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E335189" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90219" e_stop="90533"/>
          <exon e_start="90635" e_stop="90666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTAGATCGTTGCTTGATCTA-CGTTTTGGATA-TGGA-TTTGCCGCGTTTCTGTA-CCGGACCG-CCGTGGTTTTGTA-CCGGACCGGCGA-CTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTT</genome_strand>
        <mrna_strand>CTGTGTAGCTCGTTGCTTGATCTACCGTTTTGGATATTGGATTTTGCCGTGTTTCTGTACCCGGACCGCCCGTGGTTTTGTACCCGGACCGGCGACCTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTT.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E309552" ref_strand="+" ref_description="SGN-E309552 [cTOA-3-J11]">
      <seq>tgtagatcgttgcttgatctacgttttggatatggatttgccgcgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaaaagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgctgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89922" stop="91121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90222" g_stop="90533" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90821" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="499" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E309552" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90222" e_stop="90533"/>
          <exon e_start="90635" e_stop="90821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</genome_strand>
        <mrna_strand>TGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAAAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGCTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E306507" ref_strand="+" ref_description="SGN-E306507 [cLEX-13-K14]">
      <seq>atcgttgctttatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89927" stop="91127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90227" g_stop="90533" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90827" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="500" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E306507" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90227" e_stop="90533"/>
          <exon e_start="90635" e_stop="90827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATG</genome_strand>
        <mrna_strand>ATCGTTGCTTTATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E301542" ref_strand="+" ref_description="SGN-E301542 [cLEW-23-M22]">
      <seq>atcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattctgatgtttataattatttaaatgttttatttgcttaagtttttatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89927" stop="91115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90227" g_stop="90533" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90815" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="488" r_length="181" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E301542" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90227" e_stop="90533"/>
          <exon e_start="90635" e_stop="90815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGA</genome_strand>
        <mrna_strand>ATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTCTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E315700" ref_strand="+" ref_description="SGN-E315700 [cTOA-26-E23]">
      <seq>ttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcangccaaaagtacctaataaaactatattttttggtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89931" stop="91278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90231" g_stop="90533" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90978" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="646" r_length="343" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E315700" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90231" e_stop="90533"/>
          <exon e_start="90635" e_stop="90978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTT</genome_strand>
        <mrna_strand>TTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGG-AAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCANGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E301517" ref_strand="+" ref_description="SGN-E301517 [cLEW-23-C22]">
      <seq>cttgatctacgttttggatatggatttgccgtgtgtctgtggcggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagttnttatcgatgcatgcacatgtacgagagataaaagaatgaattgaagttgtgcgatgtttgagaggaaaaaagtgaagtgtttactgttttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89934" stop="91202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90234" g_stop="90533" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90902" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="568" r_length="268" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E301517" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90234" e_stop="90533"/>
          <exon e_start="90635" e_stop="90902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGT</genome_strand>
        <mrna_strand>CTTGATCTACGTTTTGGATATGGATTTGCCGTGTGTCTGTGGCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTNTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAATTGAAGTTGTGCGATGTTTGAGAGGAAAAAAGTGAAGTGTTTACTGTTTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E322766" ref_strand="+" ref_description="SGN-E322766 [cTOB-30-C21]">
      <seq>ttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaatagatggtggatctgatgtgtttgtgtgttcgtttgggatatatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatatatgccaggactatccgatttgttcgttgttgtcatagatcaagctcttttgaccgggtatcatcggcgaaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89945" stop="91020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90245" g_stop="90533" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90720" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="375" r_length="86" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E322766" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90245" e_stop="90533"/>
          <exon e_start="90635" e_stop="90720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTT</genome_strand>
        <mrna_strand>TTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAATAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATATATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATATATGCCAGGACTATCCGATTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGGTATCATCGGCGAAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E329414" ref_strand="+" ref_description="SGN-E329414 [cTOD-2-N2]">
      <seq>gatatggatttgccgtgtttgggtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaagttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89950" stop="91134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90250" g_stop="90533" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90834" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="484" r_length="200" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E329414" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90250" e_stop="90533"/>
          <exon e_start="90635" e_stop="90834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGA</genome_strand>
        <mrna_strand>GATATGGATTTGCCGTGTTTGGGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAAGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E340007" ref_strand="+" ref_description="SGN-E340007 [cTOF-3-C8]">
      <seq>cgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttgggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89963" stop="91365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90263" g_stop="90533" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91065" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="703" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E340007" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90263" e_stop="90533"/>
          <exon e_start="90635" e_stop="91065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTT-GGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGC</genome_strand>
        <mrna_strand>CGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E314957" ref_strand="+" ref_description="SGN-E314957 [cTOA-31-K13]">
      <seq>tggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgncaggactatcggntttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggntatgatgggtttaattttgatgtttataattatttaaatggtttatttgcttaagttttttatcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89986" stop="91117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90286" g_stop="90533" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90817" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="433" r_length="185" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E314957" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90286" e_stop="90533"/>
          <exon e_start="90635" e_stop="90817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGAT-GGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAG-TTTTTATCGATG</genome_strand>
        <mrna_strand>TGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGNCAGGACTATCGGNTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGNTATGATGGGTTTAATTTTGATGTTTATAATTATTTAAATGGTTTATTTGCTTAAGTTTTTTATCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E324575" ref_strand="+" ref_description="SGN-E324575 [cTOC-9-N1]">
      <seq>ccggaccggccactgacacgccgtatggatggatggttcgatatttgttaggtctggccgacggttgacgaatagatggtggatctcatgtgtgtgtgtgttcgttagggatagatgagcatactcgagcatcacatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89996" stop="90845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90296" g_stop="90533" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90647" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="251" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E324575" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90296" e_stop="90533"/>
          <exon e_start="90635" e_stop="90647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGA</genome_strand>
        <mrna_strand>CCGGACCGGCCACTGACACGCCGTATGGATGGATGGTTCGATATTTGTTAGGTCTGGCCGACGGTTGACGAATAGATGGTGGATCTCATGTGTGTGTGTGTTCGTTAGGGATAGATGAGCATACTCGAGCATCACATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E246751" ref_strand="+" ref_description="SGN-E246751 [cLEF-45-B10]">
      <seq>tgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90009" stop="91278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90309" g_stop="90533" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90978" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="569" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E246751" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90309" e_stop="90533"/>
          <exon e_start="90635" e_stop="90978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTT</genome_strand>
        <mrna_strand>TGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E330014" ref_strand="+" ref_description="SGN-E330014 [cTOD-5-J4]">
      <seq>atggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaagttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90028" stop="91137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90328" g_stop="90533" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90837" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="409" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E330014" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90328" e_stop="90533"/>
          <exon e_start="90635" e_stop="90837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGAT</genome_strand>
        <mrna_strand>ATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAAGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E320895" ref_strand="+" ref_description="SGN-E320895 [cTOB-13-A13]">
      <seq>atggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90028" stop="90999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90328" g_stop="90533" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90699" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="271" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E320895" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90328" e_stop="90533"/>
          <exon e_start="90635" e_stop="90699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGAC</genome_strand>
        <mrna_strand>ATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E319948" ref_strand="+" ref_description="SGN-E319948 [cTOB-31-E15]">
      <seq>tggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgntccacaatctcgcaccgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90029" stop="91388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90329" g_stop="90533" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91088" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="659" r_length="454" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E319948" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90329" e_stop="90533"/>
          <exon e_start="90635" e_stop="91088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCC</genome_strand>
        <mrna_strand>TGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGNTCCACAATCTCGCACCGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E262086" ref_strand="+" ref_description="SGN-E262086 [cLEG-58-G23]">
      <seq>tctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90048" stop="91159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90348" g_stop="90533" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90859" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="411" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E262086" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90348" e_stop="90533"/>
          <exon e_start="90635" e_stop="90859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTG</genome_strand>
        <mrna_strand>TCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E217638" ref_strand="+" ref_description="SGN-E217638 [cLEL-25-G19]">
      <seq>ctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90049" stop="91172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90349" g_stop="90533" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90872" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="423" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E217638" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90349" e_stop="90533"/>
          <exon e_start="90635" e_stop="90872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAG</genome_strand>
        <mrna_strand>CTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E217588" ref_strand="+" ref_description="SGN-E217588 [cLEL-25-G9]">
      <seq>ctggccgacggttgtcgaatagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90049" stop="91139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90349" g_stop="90533" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90839" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="390" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E217588" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90349" e_stop="90533"/>
          <exon e_start="90635" e_stop="90839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAA</genome_strand>
        <mrna_strand>CTGGCCGACGGTTGTCGAATAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E207197" ref_strand="+" ref_description="SGN-E207197 [cLEC-30-D17]">
      <seq>cgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90054" stop="91271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90354" g_stop="90533" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90971" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="517" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E207197" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90354" e_stop="90533"/>
          <exon e_start="90635" e_stop="90971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTT</genome_strand>
        <mrna_strand>CGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E305586" ref_strand="+" ref_description="SGN-E305586 [cLEX-14-E14]">
      <seq>gacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90055" stop="91377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90355" g_stop="90533" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91077" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="622" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E305586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90355" e_stop="90533"/>
          <exon e_start="90635" e_stop="91077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCT</genome_strand>
        <mrna_strand>GACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E315718" ref_strand="+" ref_description="SGN-E315718 [cTOA-26-K23]">
      <seq>ttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaaaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatncattttacattatcagcatccatatattaattactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90060" stop="91531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90360" g_stop="90533" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91231" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="770" r_length="596" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E315718" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90360" e_stop="90533"/>
          <exon e_start="90635" e_stop="91231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTT</genome_strand>
        <mrna_strand>TTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAA-AATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATNCATTTTACATTATCAGCATCCATATATTAATTACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E322358" ref_strand="+" ref_description="SGN-E322358 [cTOB-24-F15]">
      <seq>ttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacnaagtattcgtgttgaattgcttaatatggcgatggacaaagncacgtttctactgctgcactcctcagagccttctggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90096" stop="91483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90396" g_stop="90533" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91183" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="687" r_length="549" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E322358" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90396" e_stop="90533"/>
          <exon e_start="90635" e_stop="91183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG</genome_strand>
        <mrna_strand>TTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACNAAGTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGNCACGTTTCTACTGCTGCACTCCTCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E302181" ref_strand="+" ref_description="SGN-E302181 [cLEW-19-P14]">
      <seq>ttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90096" stop="91408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90396" g_stop="90533" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91108" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="612" r_length="474" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E302181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90396" e_stop="90533"/>
          <exon e_start="90635" e_stop="91108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTAT</genome_strand>
        <mrna_strand>TTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E333984" ref_strand="+" ref_description="SGN-E333984 [cTOD-24-E7]">
      <seq>tttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90100" stop="91532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90400" g_stop="90533" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91232" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="732" r_length="598" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E333984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90400" e_stop="90533"/>
          <exon e_start="90635" e_stop="91232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTC</genome_strand>
        <mrna_strand>TTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E314422" ref_strand="+" ref_description="SGN-E314422 [cTOA-21-F2]">
      <seq>gagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaancatctcgcaccgatccagtggttacttgttttttatggacnagttattcgtggntgattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagagtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90112" stop="91547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90412" g_stop="90533" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91247" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="734" r_length="612" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E314422" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90412" e_stop="90533"/>
          <exon e_start="90635" e_stop="91247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTA</genome_strand>
        <mrna_strand>GAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAANCATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACNAGTTATTCGTGGNTGATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGA-GTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E276751" ref_strand="+" ref_description="SGN-E276751 [cLEN-14-L6]">
      <seq>gcatagtcgagcatcatatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90114" stop="91282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90414" g_stop="90533" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90982" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="468" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E276751" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90414" e_stop="90533"/>
          <exon e_start="90635" e_stop="90982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAG</genome_strand>
        <mrna_strand>GCATAGTCGAGCATCATATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E312820" ref_strand="+" ref_description="SGN-E312820 [cTOA-8-G19]">
      <seq>ctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90133" stop="91386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90433" g_stop="90533" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91086" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="553" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E312820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90433" e_stop="90533"/>
          <exon e_start="90635" e_stop="91086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGAT</genome_strand>
        <mrna_strand>CTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E207072" ref_strand="+" ref_description="SGN-E207072 [cLEC-30-F1]">
      <seq>aagttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90135" stop="91114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90433" g_stop="90533" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90814" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="281" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E207072" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90433" e_stop="90533"/>
          <exon e_start="90635" e_stop="90814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCG</genome_strand>
        <mrna_strand>AAGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E248914" ref_strand="+" ref_description="SGN-E248914 [cLEF-49-H15]">
      <seq>ggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90156" stop="91357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90456" g_stop="90533" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91057" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="501" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E248914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90456" e_stop="90533"/>
          <exon e_start="90635" e_stop="91057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCT</genome_strand>
        <mrna_strand>GGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E316369" ref_strand="+" ref_description="SGN-E316369 [cTOA-25-K6]">
      <seq>agaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacnagttattcgtgttgaattgcttaatatggcgatggacnaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90168" stop="91536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90468" g_stop="90533" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91236" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="668" r_length="602" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E316369" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90468" e_stop="90533"/>
          <exon e_start="90635" e_stop="91236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCT</genome_strand>
        <mrna_strand>AGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACNAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACNAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E211547" ref_strand="+" ref_description="SGN-E211547 [cLEC-67-C9]">
      <seq>agtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcaaagccttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90171" stop="91483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90471" g_stop="90533" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91183" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="612" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E211547" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90471" e_stop="90533"/>
          <exon e_start="90635" e_stop="91183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG</genome_strand>
        <mrna_strand>AGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E318393" ref_strand="+" ref_description="SGN-E318393 [cTOA-29-L4]">
      <seq>aaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90180" stop="91161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90480" g_stop="90533" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90861" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="281" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E318393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90480" e_stop="90533"/>
          <exon e_start="90635" e_stop="90861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCG</genome_strand>
        <mrna_strand>AACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E274859" ref_strand="+" ref_description="SGN-E274859 [cLEN-13-L6]">
      <seq>ttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttntgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90184" stop="91282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90484" g_stop="90533" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90982" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="398" r_length="348" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E274859" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90484" e_stop="90533"/>
          <exon e_start="90635" e_stop="90982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAG</genome_strand>
        <mrna_strand>TTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTNTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E330512" ref_strand="+" ref_description="SGN-E330512 [cTOD-4-N8]">
      <seq>ttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90205" stop="91576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90505" g_stop="90533" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91276" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="671" r_length="642" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E330512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90505" e_stop="90533"/>
          <exon e_start="90635" e_stop="91276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATA</genome_strand>
        <mrna_strand>TTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E314103" ref_strand="+" ref_description="SGN-E314103 [cTOA-19-D12]">
      <seq>ttgtgcgcaagagatttattggtttgattattgatgcaaggactatcggttttgttcgtggttgttatagatcaagctctgttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatgggttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcacgccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatcttcgaccgatccagtggttacttgttttttatggacaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90213" stop="91418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90513" g_stop="90533" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91118" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="505" r_length="484" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E314103" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90513" e_stop="90533"/>
          <exon e_start="90635" e_stop="91118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTA</genome_strand>
        <mrna_strand>TTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGATTATTGATGCAAGGACTATCGGTTTTGTTCGTGGTTGTTATAGATCAAGCTCTGTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGGTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCACGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTTCGACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E736549" ref_strand="+" ref_description="SGN-E736549 [LC06AG09]">
      <seq>gttcggaagagatttattggtttgaagatagatgcaaggactatcggtttggtgccttgttgtcatagatcaggctcttttgaccggttatcatcggccgaaggttgaatcagagaacgttatggtgatccaaggttatgatggtctaattttgatgtttataattatttaaatgttttatttgcttcagtttttattgatgcatgcacatgtacgagagataaaagaacgagttgaggttgtgcgaggtatgagaggaaaaagtgaggtgtttattgttttatgttatcaggcctttgccatgttgggtgcgctcgcttggcaggccaaaagtacctaataaaactatattctttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgttgcatcctttttattttttcatgctctttccctgctcctgcgtctaccaatctcgcaccgatccagtggttacttgttttgtatggacaagttattcgtgttgaattttgcttaatatggcgatggacaaagcaacgtttctactgctgcacttatcagaggtacataatcaattttacattatcagcatccatgtattaattagttttcctctataatcacctagacagtaatgataatatctccaatcaatagttttagaattattcaacaagccgtacaaagcttagttttttaaatgcagtcacatacagctgattattgaagtagctttaaactatttcataaaatattttggatggtctcccctctncactctattctagatatccaatttaaccatgaaatttgataacttagggttcatgtacttcatatttttcaagaacgaatgtatttcaaaaacaaaaatattgacccctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90334" stop="91804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90515" g_stop="90533" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91504" g_length="870"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="896" r_length="877" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E736549" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90515" e_stop="90533"/>
          <exon e_start="90635" e_stop="91504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGG-CGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCT-C-TTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAA--TTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTA-TGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTA---CATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTA</genome_strand>
        <mrna_strand>GTTCGGAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTGGTGCCTTGTTGTCATAGATCAGGCTCTTTTGACCGGTTATCATCGGCCGAAGGTTGAATCAGAGAACGTTATGGTG-ATCCAAGGTTATGATGGTCTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTCAGTTTTTATTGATGCATGCACATGTACGAGAGATAAAAGAACGAGTTGAGGTTGTGCGAGGTATGAGAGG-AAAAAGTGAGGTGTTTATTGTTTTATGTTATCAGGCCTTTGCCATGTTGGGTGCGCTCGCTTGGCAGGCCAAAAGTACCTAATAAAACTATATTCTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTTGCATCCTTTTTATTTTTTCATGCTCTTTCCCTGCTCCTGCGTCTACCAATCTCGCACCGATCCAGTGGTTACTTGTTTTGTATGGACAAGTTATTCGTGTTGAATTTTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTTATCAGAGGTACATAATCAATTTTACATTATCAGCATCCATGTATTAATTAGTTTTCCTCTATAATCACCTAGACAGTAATGATAATATCTCCAATCAATAGTTTTAGAATTATTCAACAAGCCGTACAAAGCTTAGTTTTTTAAATGCAGTCACATACAGCTGATTATTGAAGTAGCTTTAAACTATTTCATAAAATATTTTGGATGGTCTCCCCTCTNCACTCTATTCTAGATATCCAATTTAACCATGAAATTTGATAACTTAGGGTTCATGTACTTCATATTTTTCAAGAACGAATGTATTTCAAAAACAAAAATATTGACCCCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E337219" ref_strand="+" ref_description="SGN-E337219 [cTOE-7-M5]">
      <seq>aagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90334" stop="92405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90521" g_stop="90533" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91183" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="562" r_length="549" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91184" i_stop="92031" i_length="848">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.183" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92032" g_stop="92105" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="636" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E337219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90521" e_stop="90533"/>
          <exon e_start="90635" e_stop="91183"/>
          <exon e_start="92032" e_stop="92105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTG</genome_strand>
        <mrna_strand>AAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E337035" ref_strand="+" ref_description="SGN-E337035 [cTOE-20-F17]">
      <seq>aagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacacggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtgcaacaatctcgcaccgatccagtggttacttgttttttatggacaagttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90334" stop="91419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90521" g_stop="90533" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91119" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="498" r_length="485" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E337035" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90521" e_stop="90533"/>
          <exon e_start="90635" e_stop="91119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTAT</genome_strand>
        <mrna_strand>AAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACACGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTGCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E337146" ref_strand="+" ref_description="SGN-E337146 [cTOE-7-L5]">
      <seq>aagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacanggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90334" stop="91354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90521" g_stop="90533" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91054" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="433" r_length="420" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E337146" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90521" e_stop="90533"/>
          <exon e_start="90635" e_stop="91054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTC</genome_strand>
        <mrna_strand>AAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACANGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E735336" ref_strand="+" ref_description="SGN-E735336 [LC01AD12]">
      <seq>agagatcttttggggtgaagatagatgcaaggactatcggtttggggccttgttgtcatatatcacgctcttttgaccggttatcatcggccgaaggttgaatcagagaacgttatggtgatccaaggttatgatggtctaattttgatgtttataattatttaaatgttttatttgcttcagtttttattgatgcatgcacatgtacgagagataaaagaacgagttgaggttgtgcgaggtatgagaggaaaaagtgaggtgtttattgttttatgttatcaggcctttgccatgttgggtgcgctcgcttggcaggccaaaagtacctaataaaactatattctttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgttgcatcctttttattttttcatgctctttccctgctcctgcgtctaccaatctcgcaccgatccagtggttacttgttttgtatggacaagttattcgtgttgaattttgcttaatatggcgatggacaaagcaacgtttctactgctgcacttatcagaggtacataatcaattttacattatcagcatccatgtattaattagttttcctctataatcacctagacagtaatgataatatctccaatcaatagttttagaattattcaacaagccgtacaaagcttagttttttaaatgcagtcacatacagctgattattgaagtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90334" stop="91654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90522" g_stop="90533" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91354" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="735" r_length="723" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E735336" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90522" e_stop="90533"/>
          <exon e_start="90635" e_stop="91354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGC-GAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCT-C-TTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAA--TTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCT</genome_strand>
        <mrna_strand>AGAGATCTTTTG.....................................................................................................GGGTGAAGATAGATGCAAGGACTATCGGTTTGGGGCCTTGTTGTCATATATCACGCTCTTTTGACCGGTTATCATCGGCCGAAGGTTGAATCAGAGAACGTTATGGTG-ATCCAAGGTTATGATGGTCTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTCAGTTTTTATTGATGCATGCACATGTACGAGAGATAAAAGAACGAGTTGAGGTTGTGCGAGGTATGAGAGG-AAAAAGTGAGGTGTTTATTGTTTTATGTTATCAGGCCTTTGCCATGTTGGGTGCGCTCGCTTGGCAGGCCAAAAGTACCTAATAAAACTATATTCTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTTGCATCCTTTTTATTTTTTCATGCTCTTTCCCTGCTCCTGCGTCTACCAATCTCGCACCGATCCAGTGGTTACTTGTTTTGTATGGACAAGTTATTCGTGTTGAATTTTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTTATCAGAGGTACATAATCAATTTTACATTATCAGCATCCATGTATTAATTAGTTTTCCTCTATAATCACCTAGACAGTAATGATAATATCTCCAATCAATAGTTTTAGAATTATTCAACAAGCCGTACAAAGCTTAGTTTTTTAAATGCAGTCACATACAGCTGATTATTGAAGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E207312" ref_strand="+" ref_description="SGN-E207312 [cLEC-30-J21]">
      <seq>ttggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90334" stop="91271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90531" g_stop="90533" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90971" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="340" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E207312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90531" e_stop="90533"/>
          <exon e_start="90635" e_stop="90971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTT</genome_strand>
        <mrna_strand>TTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E330908" ref_strand="+" ref_description="SGN-E330908 [cTOD-10-C6]">
      <seq>ggttggtttgaagaatagaagccaaggactatcggttttgttccgttgttgtcatagagtcaagctcttttgaccggttattcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgccccatgtaccagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcccctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90334" stop="91472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90635" g_stop="91172" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="550" r_length="545" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E330908" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90635" e_stop="91172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGAAG-ATAGATG-CAAGGACTATCGGTTTTGTT-CGTTGTTGTCATAGA-TCAAGCTCTTTTGACCGGTTA-TCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATG-CACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTG-CGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGC</genome_strand>
        <mrna_strand>GTTTGAAGAATAGAAGCCAAGGACTATCGGTTTTGTTCCGTTGTTGTCATAGAGTCAAGCTCTTTTGACCGGTTATTCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCCCCATGTACCAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCCCCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E248797" ref_strand="+" ref_description="SGN-E248797 [cLEG-5-C14]">
      <seq>atgcaaggactatcggatttgttcgttggtggcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacanggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90347" stop="91386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90647" g_stop="91086" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E248797" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90647" e_stop="91086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGAT</genome_strand>
        <mrna_strand>ATGCAAGGACTATCGGATTTGTTCGTTGGTGGCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACANGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E260182" ref_strand="+" ref_description="SGN-E260182 [cLEG-52-B4]">
      <seq>gcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacaaggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90349" stop="91410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90649" g_stop="91110" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E260182" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90649" e_stop="91110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGG</genome_strand>
        <mrna_strand>GCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAAGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E344535" ref_strand="+" ref_description="SGN-E344535 [cTOF-14-J18]">
      <seq>ggactatcggttttgtntcgttgttgtcattagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagttttatcgatgcatgcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90353" stop="91127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90653" g_stop="90827" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E344535" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90653" e_stop="90827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTATCGGTTTTGT-TCGTTGTTGTCA-TAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATG</genome_strand>
        <mrna_strand>GGACTATCGGTTTTGTNTCGTTGTTGTCATTAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAG-TTTTATCGATGCATGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E312074" ref_strand="+" ref_description="SGN-E312074 [cTOA-11-C16]">
      <seq>atagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90380" stop="92064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90680" g_stop="91183" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91184" i_stop="91660" i_length="477">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91661" g_stop="91764" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="608" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E312074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90680" e_stop="91183"/>
          <exon e_start="91661" e_stop="91764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCT</genome_strand>
        <mrna_strand>ATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E337776" ref_strand="+" ref_description="SGN-E337776 [cTOE-17-J9]">
      <seq>tagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90381" stop="91591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90681" g_stop="91291" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E337776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90681" e_stop="91291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTC</genome_strand>
        <mrna_strand>TAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E250433" ref_strand="+" ref_description="SGN-E250433 [cLEG-6-H14]">
      <seq>tttgaccggttatcatcggcgaatgttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcaatgttctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90394" stop="91354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90694" g_stop="91054" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E250433" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90694" e_stop="91054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTC-ATGTTCTTTC</genome_strand>
        <mrna_strand>TTTGACCGGTTATCATCGGCGAATGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCAATGTTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E204802" ref_strand="+" ref_description="SGN-E204802 [cLEC-14-C10]">
      <seq>tcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90406" stop="91273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90706" g_stop="90973" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E204802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90706" e_stop="90973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTG</genome_strand>
        <mrna_strand>TCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E328865" ref_strand="+" ref_description="SGN-E328865 [cTOC-24-C14]">
      <seq>atcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgattttttgataactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90408" stop="91739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90708" g_stop="91439" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E328865" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90708" e_stop="91439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGA-TTTTTGATAACTT</genome_strand>
        <mrna_strand>ATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTTGATAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E298295" ref_strand="+" ref_description="SGN-E298295 [cLEW-18-O12]">
      <seq>atcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtgtaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90408" stop="91591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90708" g_stop="91291" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E298295" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90708" e_stop="91291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTC</genome_strand>
        <mrna_strand>ATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTGTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E203815" ref_strand="+" ref_description="SGN-E203815 [cLEC-17-L4]">
      <seq>atcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaagagaggcacagggttttgcctggatctcctctctgtgtgtgtggcctcttttattttttcatgttctttccctgctcctgggaacaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90408" stop="91374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90708" g_stop="91074" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E203815" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90708" e_stop="91074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAA</genome_strand>
        <mrna_strand>ATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAAGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTGGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGGGAACAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E329484" ref_strand="+" ref_description="SGN-E329484 [cTOD-11-J3]">
      <seq>gcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90412" stop="91450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90712" g_stop="91150" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E329484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90712" e_stop="91150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGAC</genome_strand>
        <mrna_strand>GCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E375253" ref_strand="+" ref_description="SGN-E375253 [TUS-34-H23]">
      <seq>tgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactattttataaaatattttggctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90420" stop="91684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90720" g_stop="91384" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E375253" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90720" e_stop="91384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGG</genome_strand>
        <mrna_strand>TGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTTATAAAATATTTTGGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E247158" ref_strand="+" ref_description="SGN-E247158 [cLEF-46-F23]">
      <seq>gaatcatagaacgttatggtgaatccaaagttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaagtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90421" stop="91475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90721" g_stop="91175" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E247158" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90721" e_stop="91175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACT</genome_strand>
        <mrna_strand>GAATCATAGAACGTTATGGTGAATCCAAAGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAAGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E250799" ref_strand="+" ref_description="SGN-E250799 [cLEG-13-C23]">
      <seq>gaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatggaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtggctactgctgcactcctcataggtacataatcaattgtacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatatttgtagaatcattcaacaagccgcacaaagcttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90429" stop="91613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90729" g_stop="91313" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E250799" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90729" e_stop="91313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGT</genome_strand>
        <mrna_strand>GAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATGGAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTGGCTACTGCTGCACTCCTCATAGGTACATAATCAATTGTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATATTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E317938" ref_strand="+" ref_description="SGN-E317938 [cTOA-30-A18]">
      <seq>gtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgctttatatggcgatggacaaagcaacgtttctactgctgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90439" stop="91476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90739" g_stop="91176" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E317938" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90739" e_stop="91176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTC</genome_strand>
        <mrna_strand>GTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTTATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E252070" ref_strand="+" ref_description="SGN-E252070 [cLEG-8-D4]">
      <seq>tttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcatgccaaaagtacctaataaaactata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90466" stop="91266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90766" g_stop="90966" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E252070" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90766" e_stop="90966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATA</genome_strand>
        <mrna_strand>TTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCATGCCAAAAGTACCTAATAAAACTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E245789" ref_strand="+" ref_description="SGN-E245789 [cLEF-48-O3]">
      <seq>tttatttgcttaagtttttatcgatgcatgcacatgtacgagagatgggagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90492" stop="91651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90792" g_stop="91351" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E245789" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90792" e_stop="91351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCA</genome_strand>
        <mrna_strand>TTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATGGGAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E213669" ref_strand="+" ref_description="SGN-E213669 [cLEC-76-D1]">
      <seq>tttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggtttgtcctgttacatttggaaacactcaacttttactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90508" stop="92655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90808" g_stop="91183" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91184" i_stop="92031" i_length="848">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.183" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92032" g_stop="92355" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="699" r_length="323" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E213669" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90808" e_stop="91183"/>
          <exon e_start="92032" e_stop="92355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAA</genome_strand>
        <mrna_strand>TTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTTGTCCTGTTACATTTGGAAACACTCAACTTTT-ACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E204433" ref_strand="+" ref_description="SGN-E204433 [cLEC-13-J14]">
      <seq>tttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctaattttgtttgtgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90508" stop="92491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90808" g_stop="91183" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91184" i_stop="92031" i_length="848">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.183" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92032" g_stop="92191" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="536" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E204433" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90808" e_stop="91183"/>
          <exon e_start="92032" e_stop="92191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGT</genome_strand>
        <mrna_strand>TTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAATTTTGTTTGTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E210981" ref_strand="+" ref_description="SGN-E210981 [cLEC-69-F12]">
      <seq>gcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacacctttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90521" stop="91876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90821" g_stop="91576" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E210981" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90821" e_stop="91576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTT</genome_strand>
        <mrna_strand>GCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E330674" ref_strand="+" ref_description="SGN-E330674 [cTOD-8-G7]">
      <seq>acatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90523" stop="92068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90823" g_stop="91183" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91184" i_stop="91660" i_length="477">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91661" g_stop="91768" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="469" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E330674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90823" e_stop="91183"/>
          <exon e_start="91661" e_stop="91768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTC</genome_strand>
        <mrna_strand>ACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E207258" ref_strand="+" ref_description="SGN-E207258 [cLEC-30-P8]">
      <seq>tgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctactctctgagtgtgtagcctcttttattgtttcatgttctatccctgctcctgcgtacaacaatcttgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaatgcaacgttcctactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90526" stop="91470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90826" g_stop="91170" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E207258" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90826" e_stop="91170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCT</genome_strand>
        <mrna_strand>TGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTACTCTCTGAGTGTGTAGCCTCTTTTATTGTTTCATGTTCTATCCCTGCTCCTGCGTACAACAATCTTGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAATGCAACGTTCCTACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E339049" ref_strand="+" ref_description="SGN-E339049 [cTOF-6-L21]">
      <seq>gataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90535" stop="91858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90835" g_stop="91558" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E339049" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90835" e_stop="91558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCA</genome_strand>
        <mrna_strand>GATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E249534" ref_strand="+" ref_description="SGN-E249534 [cLEF-56-P17]">
      <seq>atgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90544" stop="91412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90844" g_stop="91112" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E249534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90844" e_stop="91112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGAC</genome_strand>
        <mrna_strand>ATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E327292" ref_strand="+" ref_description="SGN-E327292 [cTOC-19-J15]">
      <seq>tgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90567" stop="91923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90867" g_stop="91623" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E327292" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90867" e_stop="91623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAAC</genome_strand>
        <mrna_strand>TGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E300287" ref_strand="+" ref_description="SGN-E300287 [cLEW-17-K19]">
      <seq>tgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttaaggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90626" stop="91796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90926" g_stop="91496" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E300287" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90926" e_stop="91496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGAC</genome_strand>
        <mrna_strand>TGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAAGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E320190" ref_strand="+" ref_description="SGN-E320190 [cTOB-21-I11]">
      <seq>tcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90631" stop="91956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90931" g_stop="91656" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E320190" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90931" e_stop="91656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTT</genome_strand>
        <mrna_strand>TCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E316830" ref_strand="+" ref_description="SGN-E316830 [cTOA-27-A19]">
      <seq>ttttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90667" stop="91939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90967" g_stop="91639" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E316830" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90967" e_stop="91639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGA</genome_strand>
        <mrna_strand>TTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E251905" ref_strand="+" ref_description="SGN-E251905 [cLEG-14-G1]">
      <seq>ttttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90667" stop="91807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90967" g_stop="91507" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E251905" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90967" e_stop="91507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGT</genome_strand>
        <mrna_strand>TTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E265930" ref_strand="+" ref_description="SGN-E265930 [cLEI-6-G1]">
      <seq>ttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90671" stop="91880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90971" g_stop="91580" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E265930" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90971" e_stop="91580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCT</genome_strand>
        <mrna_strand>TTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E689211" ref_strand="+" ref_description="SGN-E689211 [t3_tus_80_J12]">
      <seq>tagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90694" stop="92067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90993" g_stop="91767" g_length="775"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E689211" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90993" e_stop="91767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTT</genome_strand>
        <mrna_strand>TAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E204097" ref_strand="+" ref_description="SGN-E204097 [cLEC-27-A23]">
      <seq>ttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90733" stop="92282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91033" g_stop="91183" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91184" i_stop="91660" i_length="477">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91661" g_stop="91982" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="473" r_length="322" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E204097" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91033" e_stop="91183"/>
          <exon e_start="91661" e_stop="91982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTT</genome_strand>
        <mrna_strand>TTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E245187" ref_strand="+" ref_description="SGN-E245187 [cLEF-13-F13]">
      <seq>ttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90735" stop="91802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91035" g_stop="91502" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E245187" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91035" e_stop="91502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTT</genome_strand>
        <mrna_strand>TTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E276376" ref_strand="+" ref_description="SGN-E276376 [cLEN-17-M19]">
      <seq>ttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90735" stop="91699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91035" g_stop="91399" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E276376" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91035" e_stop="91399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACT</genome_strand>
        <mrna_strand>TTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E212328" ref_strand="+" ref_description="SGN-E212328 [cLEC-74-I17]">
      <seq>tctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcanggtgacaagattcgcatctnaaatatgtcatgtaaaaaagcatctaaaaatagttctgcgtaagaacattgtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90749" stop="92038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91049" g_stop="91738" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E212328" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91049" e_stop="91738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATG</genome_strand>
        <mrna_strand>TCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCANGGTGACAAGATTCGCATCTNAAATATGTCATGTAAAAAAGCATCTAAAAAT-AGTTCTGCGTAAGAA-CATTGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E274537" ref_strand="+" ref_description="SGN-E274537 [cLEN-11-B16]">
      <seq>tctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90749" stop="91956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91049" g_stop="91656" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E274537" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91049" e_stop="91656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTT</genome_strand>
        <mrna_strand>TCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E212111" ref_strand="+" ref_description="SGN-E212111 [cLEC-75-E14]">
      <seq>tctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90749" stop="91944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91049" g_stop="91644" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E212111" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91049" e_stop="91644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATT</genome_strand>
        <mrna_strand>TCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E550803" ref_strand="+" ref_description="SGN-E550803 [TUS-50-M12]">
      <seq>cctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90761" stop="93018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91061" g_stop="91183" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91184" i_stop="92142" i_length="959">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92143" g_stop="92466" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="450" r_length="327" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92580" g_stop="92718" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="589" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E550803" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91061" e_stop="91183"/>
          <exon e_start="92143" e_stop="92466"/>
          <exon e_start="92580" e_stop="92718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAG</genome_strand>
        <mrna_strand>CCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E688513" ref_strand="+" ref_description="SGN-E688513 [t3_tus_50_m12]">
      <seq>cctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90761" stop="93018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91061" g_stop="91183" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91184" i_stop="92142" i_length="959">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92143" g_stop="92466" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="450" r_length="327" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92580" g_stop="92718" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="589" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E688513" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91061" e_stop="91183"/>
          <exon e_start="92143" e_stop="92466"/>
          <exon e_start="92580" e_stop="92718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAG</genome_strand>
        <mrna_strand>CCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E296215" ref_strand="+" ref_description="SGN-E296215 [cLET-24-E18]">
      <seq>tccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatgtcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaaagtaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90767" stop="91886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91067" g_stop="91586" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E296215" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91067" e_stop="91586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTT-AAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCC</genome_strand>
        <mrna_strand>TCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E249137" ref_strand="+" ref_description="SGN-E249137 [cLEF-49-P10]">
      <seq>ccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90768" stop="91882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91068" g_stop="91582" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E249137" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91068" e_stop="91582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTA</genome_strand>
        <mrna_strand>CCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E375667" ref_strand="+" ref_description="SGN-E375667 [TUS-35-O1]">
      <seq>aacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttactcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttacggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90770" stop="92033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91070" g_stop="91733" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E375667" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91070" e_stop="91733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTG</genome_strand>
        <mrna_strand>AACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTACTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTACGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E257667" ref_strand="+" ref_description="SGN-E257667 [cLEG-39-M3]">
      <seq>aacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90770" stop="91956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91070" g_stop="91656" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E257667" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91070" e_stop="91656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTT</genome_strand>
        <mrna_strand>AACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E258975" ref_strand="+" ref_description="SGN-E258975 [cLEG-41-D18]">
      <seq>aacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90770" stop="91806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91070" g_stop="91506" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E258975" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91070" e_stop="91506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAG</genome_strand>
        <mrna_strand>AACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E259062" ref_strand="+" ref_description="SGN-E259062 [cLEG-41-G10]">
      <seq>aacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttaagggtcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90770" stop="91796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91070" g_stop="91496" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E259062" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91070" e_stop="91496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGAC</genome_strand>
        <mrna_strand>AACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAAGGGTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E244462" ref_strand="+" ref_description="SGN-E244462 [cLEF-3-D5]">
      <seq>aatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90773" stop="92069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91073" g_stop="91769" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E244462" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91073" e_stop="91769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCT</genome_strand>
        <mrna_strand>AATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E332966" ref_strand="+" ref_description="SGN-E332966 [cTOD-19-L23]">
      <seq>tcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90777" stop="91944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91077" g_stop="91644" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E332966" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91077" e_stop="91644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATT</genome_strand>
        <mrna_strand>TCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E321743" ref_strand="+" ref_description="SGN-E321743 [cTOB-25-I2]">
      <seq>tcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagctttagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90777" stop="91939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91077" g_stop="91639" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E321743" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91077" e_stop="91639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGA</genome_strand>
        <mrna_strand>TCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTTAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E257866" ref_strand="+" ref_description="SGN-E257866 [cLEG-39-J9]">
      <seq>cgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90778" stop="91878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91078" g_stop="91578" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E257866" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91078" e_stop="91578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAG</genome_strand>
        <mrna_strand>CGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E301390" ref_strand="+" ref_description="SGN-E301390 [cLEW-24-L14]">
      <seq>ttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttaaggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90801" stop="91835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91101" g_stop="91535" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E301390" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91101" e_stop="91535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGT</genome_strand>
        <mrna_strand>TTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAAGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E312710" ref_strand="+" ref_description="SGN-E312710 [cTOA-8-I9]">
      <seq>acaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90811" stop="92023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91111" g_stop="91723" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E312710" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91111" e_stop="91723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTA</genome_strand>
        <mrna_strand>ACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E211434" ref_strand="+" ref_description="SGN-E211434 [cLEC-67-K4]">
      <seq>agttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtggacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaacattgtcatggcataaccaaggctttcactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90814" stop="92060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91114" g_stop="91760" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E211434" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91114" e_stop="91760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTAT</genome_strand>
        <mrna_strand>AGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGGACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAA-CATTGTCATGGCATAACCAAGGCTTTCACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E211813" ref_strand="+" ref_description="SGN-E211813 [cLEC-66-L13]">
      <seq>agttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtagggttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90814" stop="91956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91114" g_stop="91656" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E211813" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91114" e_stop="91656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTT</genome_strand>
        <mrna_strand>AGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E206448" ref_strand="+" ref_description="SGN-E206448 [cLEC-23-A14]">
      <seq>agttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtgatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgagttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90814" stop="91803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91114" g_stop="91503" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E206448" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91114" e_stop="91503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTT</genome_strand>
        <mrna_strand>AGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTGATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGAGTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E243023" ref_strand="+" ref_description="SGN-E243023 [cLEF-1-H23]">
      <seq>tgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactntaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90826" stop="91958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91126" g_stop="91658" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E243023" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91126" e_stop="91658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTC</genome_strand>
        <mrna_strand>TGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTNTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E243043" ref_strand="+" ref_description="SGN-E243043 [cLEF-1-P15]">
      <seq>tgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90826" stop="91888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91126" g_stop="91588" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E243043" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91126" e_stop="91588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTC</genome_strand>
        <mrna_strand>TGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E255255" ref_strand="+" ref_description="SGN-E255255 [cLEG-31-H12]">
      <seq>aaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcaccataccnaaaaactgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90851" stop="92010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91151" g_stop="91710" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E255255" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91151" e_stop="91710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCA-CATA-C----AGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAA</genome_strand>
        <mrna_strand>AAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACCATACCNAAAAACTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E313133" ref_strand="+" ref_description="SGN-E313133 [cTOA-18-M11]">
      <seq>ctgctgcactcctcagaggtacataatcaattttacattatcagcatacacgtcgctgaatacttttcctctattatcacctacacaggaatgttaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagacttttatatgtagtcacatacagctgattattgaagcagcttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90866" stop="91800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91166" g_stop="91500" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E313133" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91166" e_stop="91500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATAT-ATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCT</genome_strand>
        <mrna_strand>CTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATACACGTCGCTGAATACTTTTCCTCTATTATCACCTACACAGGAATGTTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGACTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGC-TTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E317450" ref_strand="+" ref_description="SGN-E317450 [cTOA-28-P21]">
      <seq>tgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagaagcactttgtttcttttaaatcgtgatgtaaatgtttcaatctatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90870" stop="92231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91170" g_stop="91931" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E317450" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91170" e_stop="91931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGG</genome_strand>
        <mrna_strand>TGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAAGCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E206429" ref_strand="+" ref_description="SGN-E206429 [cLEC-23-G23]">
      <seq>actcctcagaggtacataatcaattttacattatcagcagccatatattaattactttacctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctgggctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttaaggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaagcttcaactatgtctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90873" stop="92068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91173" g_stop="91768" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E206429" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91173" e_stop="91768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTC</genome_strand>
        <mrna_strand>ACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCAGCCATATATTAATTACTTTACCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGGCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAAGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAAGCTTCAACTATGTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E327298" ref_strand="+" ref_description="SGN-E327298 [cTOC-19-L17]">
      <seq>acttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatactgctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttctttttaatcgtgatgtaaatgtttcaatctatggagatgccgattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90926" stop="92244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91226" g_stop="91944" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E327298" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91226" e_stop="91944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTAT</genome_strand>
        <mrna_strand>ACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACTGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTTAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E345609" ref_strand="+" ref_description="SGN-E345609 [cTOF-18-M17]">
      <seq>cttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90927" stop="92248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91227" g_stop="91948" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E345609" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91227" e_stop="91948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCT</genome_strand>
        <mrna_strand>CTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E211770" ref_strand="+" ref_description="SGN-E211770 [cLEC-66-I10]">
      <seq>aatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90939" stop="92009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91239" g_stop="91709" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E211770" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91239" e_stop="91709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAA</genome_strand>
        <mrna_strand>AATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E333428" ref_strand="+" ref_description="SGN-E333428 [cTOD-20-L12]">
      <seq>agtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctcccctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90951" stop="92256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91251" g_stop="91956" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E333428" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91251" e_stop="91956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTT</genome_strand>
        <mrna_strand>AGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTT-AGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E308227" ref_strand="+" ref_description="SGN-E308227 [cLEY-14-N6]">
      <seq>aatcattcaacaactattgattagagatattaccattactgtgtaggtgattatagaggaaaagtaattaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90959" stop="92119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91251" g_stop="91819" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="625" r_length="563" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E308227" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91251" e_stop="91819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAA</genome_strand>
        <mrna_strand>AGTAAT--TAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E308028" ref_strand="+" ref_description="SGN-E308028 [cLEY-14-I6]">
      <seq>aatcattcaacaactattgattagagatattaccattactgtgtaggtgattatagaggaaaagtaattaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtgtttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaagtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90959" stop="92066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91251" g_stop="91766" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="572" r_length="510" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E308028" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91251" e_stop="91766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCT</genome_strand>
        <mrna_strand>AGTAAT--TAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTGTTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAAGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E308116" ref_strand="+" ref_description="SGN-E308116 [cLEY-14-I5]">
      <seq>ataactattgattagagatattaccattactgtgtaggtgattatagaggaaaagtaattaatatctctaatcaatagttgtagaatcattcaacaagccgcccaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttaaggttcatgtacatatttttcaagaacgaatgtattttaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcatgtgaacaagattcgcatctaaaatatgttatgttaaaagccatctaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90959" stop="92012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91251" g_stop="91712" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="509" r_length="456" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E308116" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91251" e_stop="91712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATA</genome_strand>
        <mrna_strand>AGTAAT--TAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCCCAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAAGGTTCATGTACATATTTTTCAAGAACGAATGTATTTTAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCATGTGAACAAGATTCGCATCTAAAATATGTTATGTTAAAAGCCATCTAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E329407" ref_strand="+" ref_description="SGN-E329407 [cTOD-2-H22]">
      <seq>tctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaagagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90966" stop="92226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91266" g_stop="91926" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E329407" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91266" e_stop="91926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATC</genome_strand>
        <mrna_strand>TCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAAGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E246910" ref_strand="+" ref_description="SGN-E246910 [cLEF-41-B2]">
      <seq>tctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatattttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90966" stop="92218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91266" g_stop="91463" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91464" i_stop="91660" i_length="197">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91661" g_stop="91918" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="455" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E246910" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91266" e_stop="91463"/>
          <exon e_start="91661" e_stop="91918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATG</genome_strand>
        <mrna_strand>TCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATA-TTTTCAG.....................................................................................................................................................................................................GTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E255595" ref_strand="+" ref_description="SGN-E255595 [cLEG-36-I4]">
      <seq>tctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90966" stop="92150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91266" g_stop="91850" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E255595" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91266" e_stop="91850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTT</genome_strand>
        <mrna_strand>TCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E256466" ref_strand="+" ref_description="SGN-E256466 [cLEG-38-F9]">
      <seq>tctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90966" stop="92130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91266" g_stop="91830" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E256466" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91266" e_stop="91830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTT</genome_strand>
        <mrna_strand>TCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E255205" ref_strand="+" ref_description="SGN-E255205 [cLEG-31-B23]">
      <seq>tctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90966" stop="92127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91266" g_stop="91827" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E255205" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91266" e_stop="91827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTC</genome_strand>
        <mrna_strand>TCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E252695" ref_strand="+" ref_description="SGN-E252695 [cLEG-16-C20]">
      <seq>ctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90967" stop="92233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91267" g_stop="91933" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E252695" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91267" e_stop="91933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAG</genome_strand>
        <mrna_strand>CTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E304220" ref_strand="+" ref_description="SGN-E304220 [cLEX-6-J13]">
      <seq>taatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90968" stop="92233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91268" g_stop="91933" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E304220" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91268" e_stop="91933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAG</genome_strand>
        <mrna_strand>TAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E269499" ref_strand="+" ref_description="SGN-E269499 [cLEM-2-D4]">
      <seq>taatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90968" stop="92177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91268" g_stop="91877" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E269499" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91268" e_stop="91877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTT</genome_strand>
        <mrna_strand>TAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E203926" ref_strand="+" ref_description="SGN-E203926 [cLEC-17-H16]">
      <seq>aatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgcgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90973" stop="92068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91273" g_stop="91768" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E203926" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91273" e_stop="91768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTC</genome_strand>
        <mrna_strand>AATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGCGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E247164" ref_strand="+" ref_description="SGN-E247164 [cLEF-46-J9]">
      <seq>ttcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaagcttcaactatgtctcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90989" stop="92069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91289" g_stop="91769" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E247164" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91289" e_stop="91769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCT</genome_strand>
        <mrna_strand>TTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAAGCTTCAACTATGTCTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E243363" ref_strand="+" ref_description="SGN-E243363 [cLEF-16-I13]">
      <seq>ttcaacaagccgcacaaagcttagtctattatatgtagtcacatacagctgattatagaagcagctataaactatttcataaaatattgcggctggactcccctctcaactgtatgtttatatccaatataaccatgatttttgataactaagggttcatgtacatattgttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcccgctagtaattatatagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtgatgtaaaaagccatctaaaaataagttctgcgtaagaaccataggcatggcataacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90989" stop="92047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91289" g_stop="91747" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E243363" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91289" e_stop="91747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCA</genome_strand>
        <mrna_strand>TTCAACAAGCCGCACAAAGCTTAGTCTATTATATGTAGTCACATACAGCTGATTATAGAAGCAGCTATAAACTATTTCATAAAATATTGCGGCTGGACTCCCCTCTCAACTGTATGTTTATATCCAATATAACCATGATTTTTGATAACTAAGGGTTCATGTACATATTGTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCCCGCTAGTAATTATATAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTGATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATAGGCATGGCATAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E250021" ref_strand="+" ref_description="SGN-E250021 [cLEG-4-P7]">
      <seq>gccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaacgatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttaaggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90997" stop="92009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91297" g_stop="91709" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E250021" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91297" e_stop="91709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAA</genome_strand>
        <mrna_strand>GCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACGATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAAGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E312050" ref_strand="+" ref_description="SGN-E312050 [cTOA-11-I5]">
      <seq>acaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttggtctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91002" stop="92164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91302" g_stop="91864" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E312050" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91302" e_stop="91864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTAT</genome_strand>
        <mrna_strand>ACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGGTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E274999" ref_strand="+" ref_description="SGN-E274999 [cLEN-16-K8]">
      <seq>aaagcttagttttttatatctagtcacatacagctgattagggaagtttctttaaactattgcatccactattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgttaaaagccatctaaaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91004" stop="92013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91304" g_stop="91713" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E274999" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91304" e_stop="91713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAA</genome_strand>
        <mrna_strand>AAAGCTTAGTTTTTTATATCTAGTCACATACAGCTGATTAGGGAAGTTTCTTTAAACTATTGCATCCACTATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTTAAAAGCCATCTAAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E274948" ref_strand="+" ref_description="SGN-E274948 [cLEN-16-L6]">
      <seq>aagcttagtcttttatatgtagtcacatacagctgattatggaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91005" stop="92015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91305" g_stop="91715" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E274948" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91305" e_stop="91715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGT</genome_strand>
        <mrna_strand>AAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATGGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E210854" ref_strand="+" ref_description="SGN-E210854 [cLEC-68-N12]">
      <seq>ttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgagatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91015" stop="92374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91315" g_stop="92074" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E210854" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91315" e_stop="92074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAAC</genome_strand>
        <mrna_strand>TTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGAGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E252448" ref_strand="+" ref_description="SGN-E252448 [cLEG-12-N6]">
      <seq>tattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91042" stop="92367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91342" g_stop="92067" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E252448" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91342" e_stop="92067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAAC</genome_strand>
        <mrna_strand>TATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E251323" ref_strand="+" ref_description="SGN-E251323 [cLEG-10-P2]">
      <seq>tattgaagcagctttaaactatttcataaaatattttggctggtctcccctctgaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91042" stop="92235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91342" g_stop="91935" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E251323" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91342" e_stop="91935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGAT</genome_strand>
        <mrna_strand>TATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTGAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E247576" ref_strand="+" ref_description="SGN-E247576 [cLEF-42-F23]">
      <seq>gaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttaaggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91046" stop="92229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91346" g_stop="91929" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E247576" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91346" e_stop="91929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTAT</genome_strand>
        <mrna_strand>GAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAAGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E321864" ref_strand="+" ref_description="SGN-E321864 [cTOB-29-K21]">
      <seq>aagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaactttgggatatctttgtttctgattcatgctgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91047" stop="92408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91347" g_stop="92108" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E321864" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91347" e_stop="92108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCT</genome_strand>
        <mrna_strand>AAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTG-ATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTTGGGATATCTTTGTTTCTGATTCATGCTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E321881" ref_strand="+" ref_description="SGN-E321881 [cTOB-29-K14]">
      <seq>aagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91047" stop="92358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91347" g_stop="92059" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E321881" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91347" e_stop="92059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAA</genome_strand>
        <mrna_strand>AAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E322036" ref_strand="+" ref_description="SGN-E322036 [cTOB-29-N12]">
      <seq>aagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtagttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttccgtgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91047" stop="92243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91347" g_stop="91943" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E322036" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91347" e_stop="91943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTA</genome_strand>
        <mrna_strand>AAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTAGTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCCGTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E251793" ref_strand="+" ref_description="SGN-E251793 [cLEG-15-N6]">
      <seq>aagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91047" stop="92229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91347" g_stop="91929" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E251793" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91347" e_stop="91929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTAT</genome_strand>
        <mrna_strand>AAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E319464" ref_strand="+" ref_description="SGN-E319464 [cTOB-15-P18]">
      <seq>cagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91050" stop="92199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91350" g_stop="91899" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E319464" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91350" e_stop="91899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTT</genome_strand>
        <mrna_strand>CAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E245064" ref_strand="+" ref_description="SGN-E245064 [cLEF-13-O6]">
      <seq>agctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttacggttcatgtacatatttttcaagaacgaatgtatttcataaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91051" stop="92068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91351" g_stop="91768" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E245064" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91351" e_stop="91768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTC</genome_strand>
        <mrna_strand>AGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTACGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCATAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E207449" ref_strand="+" ref_description="SGN-E207449 [cLEC-36-E7]">
      <seq>tttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91054" stop="92276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91354" g_stop="91976" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E207449" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91354" e_stop="91976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTG</genome_strand>
        <mrna_strand>TTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E254724" ref_strand="+" ref_description="SGN-E254724 [cLEG-29-N2]">
      <seq>ttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91055" stop="92124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91355" g_stop="91824" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E254724" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91355" e_stop="91824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTAC</genome_strand>
        <mrna_strand>TTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E254534" ref_strand="+" ref_description="SGN-E254534 [cLEG-29-K22]">
      <seq>ttaaactataacatataatatgttggatggtctccactctcaactgtatgtttatatccaatataaccatgattcttgatcacttagggcacatgtacatatatttcaagaacgaatgtatttcaaaaacgaaaatatcgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagattgcgttagcttaaacctcctgctagtaactatttaaccggctagctgccaaacttgaactattattgcaatattaggaggttgttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgccatggcataaccaaagcttcaactatgtctcttctcgttgatggctgatctttttcatttgttctcacagctctttcacttggaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91055" stop="92122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91355" g_stop="91822" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E254534" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91355" e_stop="91822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAG-TTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATT</genome_strand>
        <mrna_strand>TTAAACTATAACATATAATATGTTGGATGGTCTCCACTCTCAACTGTATGTTTATATCCAATATAACCATGATTCTTGATCACTTAGGGCACATGTACATATATTTCAAGAACGAATGTATTTCAAAAACGAAAATATCGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGATTGCGTTAGCTTAAACCTCCTGCTAGTAACTATTTAACCGGCTAGCTGCCAAACTTGAACTATTATTGCAATATTAGGAGGTTGTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGCCATGGCATAACCAAAGCTTCAACTATGTCTCTTCTCGTTGATGGCTGATCTTTTTCATTTGTTCTCACAGCTCTTTCACTTGGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E323532" ref_strand="+" ref_description="SGN-E323532 [cTOC-2-C5]">
      <seq>aaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91057" stop="92068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91357" g_stop="91768" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E323532" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91357" e_stop="91768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTC</genome_strand>
        <mrna_strand>AAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E250463" ref_strand="+" ref_description="SGN-E250463 [cLEG-18-A6]">
      <seq>atattttggctggtctcccctttcaactctatgtttatatccaatataaccagtgattttttataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgtttgacccattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctattaattatttagccgtctagcgtgcaaacttgaactattatttgaatattaataggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattggcatggcataaccaaggcttcaactatgtctcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91072" stop="92070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91372" g_stop="91770" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E250463" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91372" e_stop="91770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCA-TGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTT</genome_strand>
        <mrna_strand>ATATTTTGGCTGGTCTCCCCTTTCAACTCTATGTTTATATCCAATATAACCAGTGATTTTTTATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTTGACCCATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTATTAATTATTTAGCCGTCTAGCGTGCAAACTTGAACTATTATTTGAATATTAATAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGGCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E394216" ref_strand="+" ref_description="SGN-E394216 [TUS-42-N2]">
      <seq>gtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaaataattccgtgtactgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91084" stop="92329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91384" g_stop="92029" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E394216" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91384" e_stop="92029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGT</genome_strand>
        <mrna_strand>GTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAAATAATTCCGTGTACTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E248311" ref_strand="+" ref_description="SGN-E248311 [cLEG-1-I17]">
      <seq>tctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91085" stop="92304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91385" g_stop="92004" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E248311" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91385" e_stop="92004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACT</genome_strand>
        <mrna_strand>TCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E273034" ref_strand="+" ref_description="SGN-E273034 [cLEM-25-B20]">
      <seq>tcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtaccatatttttcaagaaccgaatgtatttcaaaaacgaaaatattgaccccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttatccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91094" stop="92181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91394" g_stop="91881" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E273034" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91394" e_stop="91881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTA-CATATTTTTCAAGAA-CGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGG</genome_strand>
        <mrna_strand>TCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACCATATTTTTCAAGAACCGAATGTATTTCAAAAACGAAAATATTGAC-CCCTTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTATCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E369113" ref_strand="+" ref_description="SGN-E369113 [TUS-23-I22]">
      <seq>tttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgtttgaattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91156" stop="92315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91456" g_stop="92015" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E369113" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91456" e_stop="92015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTG-TTGAATTAAT</genome_strand>
        <mrna_strand>TTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTTGAATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E247571" ref_strand="+" ref_description="SGN-E247571 [cLEF-42-F1]">
      <seq>tttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtagggttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttggtgatggctggtctttttcatttggtctcacggctctttcacttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91158" stop="92119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91458" g_stop="91819" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E247571" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91458" e_stop="91819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAA</genome_strand>
        <mrna_strand>TTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGGTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGGTGATGGCTGGTCTTTTTCATTTGGTCTCACGGCTCTTTCACTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E336516" ref_strand="+" ref_description="SGN-E336516 [cTOE-4-J6]">
      <seq>aagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaagcaggtttgggattttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91162" stop="92303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91462" g_stop="92003" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E336516" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91462" e_stop="92003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGAC</genome_strand>
        <mrna_strand>AAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAAGCAGGTTTGGGATTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E245694" ref_strand="+" ref_description="SGN-E245694 [cLEF-48-M19]">
      <seq>acgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaagtgaacaagaatcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaagagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91166" stop="92229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91466" g_stop="91929" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E245694" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91466" e_stop="91929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTAT</genome_strand>
        <mrna_strand>ACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAAGTGAACAAGAATCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAAGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E259459" ref_strand="+" ref_description="SGN-E259459 [cLEG-42-G9]">
      <seq>aaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91179" stop="92353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91479" g_stop="92053" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E259459" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91479" e_stop="92053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGAT</genome_strand>
        <mrna_strand>AAAAACGAAAATATTGACACCTTTT-A---AGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E313969" ref_strand="+" ref_description="SGN-E313969 [cTOA-19-I10]">
      <seq>aaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91179" stop="92282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91479" g_stop="91982" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E313969" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91479" e_stop="91982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTT</genome_strand>
        <mrna_strand>AAAAACGAAAATATTGACACCTTTT-A---AGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E254524" ref_strand="+" ref_description="SGN-E254524 [cLEG-29-G20]">
      <seq>aaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagtaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91179" stop="92272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91479" g_stop="91972" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E254524" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91479" e_stop="91972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGA</genome_strand>
        <mrna_strand>AAAAACGAAAATATTGACACCTTTT-A---AGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAG-TAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E276010" ref_strand="+" ref_description="SGN-E276010 [cLEN-12-C15]">
      <seq>atattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91189" stop="92386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91489" g_stop="92086" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E276010" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91489" e_stop="92086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCT</genome_strand>
        <mrna_strand>ATATTGACACCTTTTAAGT----ATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E378708" ref_strand="+" ref_description="SGN-E378708 [TUS-34-B3]">
      <seq>tagaccaattattctgtgacgtatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaatcgtgatgtaaatgttcaatctatggagatgccgattatggctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91236" stop="92250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91536" g_stop="91950" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E378708" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91536" e_stop="91950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCC</genome_strand>
        <mrna_strand>TAGACCAATTATTCTGTGACGTATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTT-AATCGTGATGTAAATG-TTCAATCTATGGAGATGCCGATTATGGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E244456" ref_strand="+" ref_description="SGN-E244456 [cLEF-3-O2]">
      <seq>tagaccatttattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattctctagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgtactttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaatttcttgtaagttaatactatagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91236" stop="92168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91536" g_stop="91868" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E244456" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91536" e_stop="91868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTA</genome_strand>
        <mrna_strand>TAGACCATTTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTCTCTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTACTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTTCTTGTAAGTTAATACTATAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E273548" ref_strand="+" ref_description="SGN-E273548 [cLEN-6-F7]">
      <seq>agaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgcctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaaattgcaacttagaacttgggaatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91237" stop="92386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91537" g_stop="92086" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E273548" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91537" e_stop="92086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCT</genome_strand>
        <mrna_strand>AGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGCCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAAATTGCAACTTAGAACTTGGGAATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E700832" ref_strand="+" ref_description="SGN-E700832 [FA14BB10]">
      <seq>gaccgtattaacaactataagaccaatctttcggtgacgcatcaactttaagttgcgtttagcttaagcctcgtgctaacaattatttatccgtttagctatcaaacttgaactattatttgaatattagtagtttttttcaggtgaacaagattcacatctaaaatgtcatataaaaagccatctaaaaataagttctgcgtaagaaccattagcaaggcataaccaaggcttcaaccatatgtctcttcttgtcgatggctgttctttttcatttgttctcatggctcttttacttggaaaatattgccgtctcttcgttgtggatgagttaattccttttaagttaattctatggtatgagtatttgtggaatgccacttcgtttctcttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccgtctgggaagtgtattttaggcaggtttgggattttgactgttgaattacttccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctctttgtttctgattcatgctgtctggagtcctaccttgcggttgggagtgttgctcagttgatgcatggatgttacctggtgtgttcaagttttgtttgtgctgttgctgctgttgaagttgaagatctgaagatgcgtctgctgctgttggaagttaaatcatttcggtcacactgttggtttgttcctgttacatttggaaacactcagaacttttaactcatgaacttgttgctcttgcttgtttgaatctgtggtatgcatcattaacacagtatggtagcctggttattcttctcctgctgtactgcactcaaagaacttgtagcagataaattttctcccttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91235" stop="92731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91539" g_stop="92431" g_length="893"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="928" r_length="907" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E700832" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91539" e_stop="92431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGT-TAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAA-C-TATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGG--AA-A-T----T-ACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATA--TCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTC--AACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGG</genome_strand>
        <mrna_strand>ACCAATCTTTCGGTGACGCATCAACTTTAAGTTGCGTTTAGCTTAAGCCTCGTGCTAACAATTATTTATCCGTTTAGCTATCAAACTTGAACTATTATTTGAATATTAGTA-GTTTTTTTCAGGTGAACAAGATTCACATCT-AAA-ATGTCATATAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTAGCAAGGCATAACCAAGGCTTCAACCATATGTCTCTTCTTGTCGATGGCTGTTCTTTTTCATTTGTTCTCATGGCTCTTTTACTTGGAAAATATTGCCGTCTCTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATGGTATGAGTATTTGTGGAATGCCACTTCGTTTCTCTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCGTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTACTTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTCTTTGTTTCTGATTCATGCTGTCTGGAGTCCTACCTTGCGGTTGGGAGTGTTGCTCAGTTGATGCATGGATG--TTACCTGGTGTGTTCAAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTCTGCTGCTGTTGGAAGTTAAATCATTTCGGTCACACTGTTGGTTTGTTCCTGTTACATTTGGAAACACTCAGAACTTTTAACTCATGAACTTGTTGCTCTTGCTTGTTTGAATCTGTGGTATGCATCATTAACACAGTATGGTAGCCTGGTTATTCTTCTCCTGCTGTACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E246386" ref_strand="+" ref_description="SGN-E246386 [cLEF-52-D19]">
      <seq>ttctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91247" stop="92367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91547" g_stop="92067" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E246386" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91547" e_stop="92067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAAC</genome_strand>
        <mrna_strand>TTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E260870" ref_strand="+" ref_description="SGN-E260870 [cLEG-55-C4]">
      <seq>tgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtgggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaatcattttggtcacactggtggggtgttcctgttacatttggaaacactcaacttttaactcctaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91250" stop="92612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91550" g_stop="92314" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E260870" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91550" e_stop="92314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGT-GGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACT</genome_strand>
        <mrna_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTT-AATCATTTTGGTCACACTGGTGGGGTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E261845" ref_strand="+" ref_description="SGN-E261845 [cLEG-61-D11]">
      <seq>tgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccccttgtgggtgggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacacctggtggggtggtccctggtacatttggaaacactcaacttttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91250" stop="92605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91550" g_stop="92305" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E261845" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91550" e_stop="92305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGT-GGT-GGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACA-CT-GTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAAC</genome_strand>
        <mrna_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCC-CCTTGTGGGTGGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACCTGGTGGGGTGGTCCCTGGTACATTTGGAAACACTCAACTTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E259919" ref_strand="+" ref_description="SGN-E259919 [cLEG-51-A22]">
      <seq>tgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtgggtggggagtgttgctcanttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaaaacctgaanatgcgtttgctgctgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91250" stop="92538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91550" g_stop="92238" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E259919" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91550" e_stop="92238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGT-GGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGG</genome_strand>
        <mrna_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGGTGGGGAGTGTTGCTCANTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAAACCTGAANATGCGTTTGCTGCTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E259941" ref_strand="+" ref_description="SGN-E259941 [cLEG-51-I22]">
      <seq>tgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcanttgatgcatggatgttttacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91250" stop="92465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91550" g_stop="92165" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E259941" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91550" e_stop="92165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTG</genome_strand>
        <mrna_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCANTTGATGCATGGATGTTTTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E259924" ref_strand="+" ref_description="SGN-E259924 [cLEG-51-C22]">
      <seq>tgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcanttgatgcatggatgttttacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91250" stop="92464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91550" g_stop="92164" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E259924" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91550" e_stop="92164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCT</genome_strand>
        <mrna_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCANTTGATGCATGGATGTTTTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E259929" ref_strand="+" ref_description="SGN-E259929 [cLEG-51-E22]">
      <seq>tgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcanttgatgcatggatgttttacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91250" stop="92464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91550" g_stop="92164" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E259929" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91550" e_stop="92164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCT</genome_strand>
        <mrna_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCANTTGATGCATGGATGTTTTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E259935" ref_strand="+" ref_description="SGN-E259935 [cLEG-51-G22]">
      <seq>tgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91250" stop="92439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91550" g_stop="92139" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E259935" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91550" e_stop="92139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCT</genome_strand>
        <mrna_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E254013" ref_strand="+" ref_description="SGN-E254013 [cLEG-34-A4]">
      <seq>tgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattattgagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91250" stop="92411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91550" g_stop="92111" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E254013" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91550" e_stop="92111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGG</genome_strand>
        <mrna_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTGAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E259923" ref_strand="+" ref_description="SGN-E259923 [cLEG-51-C20]">
      <seq>tgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91250" stop="92404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91550" g_stop="92104" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E259923" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91550" e_stop="92104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCT</genome_strand>
        <mrna_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E259948" ref_strand="+" ref_description="SGN-E259948 [cLEG-51-M22]">
      <seq>tgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91250" stop="92402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91550" g_stop="92102" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E259948" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91550" e_stop="92102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATG</genome_strand>
        <mrna_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E259943" ref_strand="+" ref_description="SGN-E259943 [cLEG-51-K22]">
      <seq>tgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91250" stop="92395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91550" g_stop="92095" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E259943" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91550" e_stop="92095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTG</genome_strand>
        <mrna_strand>TGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E264001" ref_strand="+" ref_description="SGN-E264001 [cLEG-64-P19]">
      <seq>tgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtgggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctanttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91252" stop="92633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91552" g_stop="92333" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="783" r_length="783" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E264001" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91552" e_stop="92333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGT-GGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTG</genome_strand>
        <mrna_strand>TGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTANTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E260482" ref_strand="+" ref_description="SGN-E260482 [cLEG-54-I19]">
      <seq>tgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactggtgggttgttcctgttacatttggaaacactcaacttttaactcctaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91252" stop="92614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91552" g_stop="92314" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E260482" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91552" e_stop="92314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACT</genome_strand>
        <mrna_strand>TGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGGTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E253596" ref_strand="+" ref_description="SGN-E253596 [cLEG-32-C15]">
      <seq>tgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91252" stop="92413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91552" g_stop="92113" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E253596" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91552" e_stop="92113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGT</genome_strand>
        <mrna_strand>TGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E259472" ref_strand="+" ref_description="SGN-E259472 [cLEG-42-K21]">
      <seq>tgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91252" stop="92413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91552" g_stop="92113" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E259472" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91552" e_stop="92113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGT</genome_strand>
        <mrna_strand>TGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E243031" ref_strand="+" ref_description="SGN-E243031 [cLEF-1-L5]">
      <seq>gacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttggttctgattcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91253" stop="92404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91553" g_stop="92104" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E243031" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91553" e_stop="92104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCT</genome_strand>
        <mrna_strand>GACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGGTTCTGATTCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E259956" ref_strand="+" ref_description="SGN-E259956 [cLEG-51-B21]">
      <seq>gacgcatcaactttaagttgcgttagcttaatcctcatgctagtaattatttacccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcacgtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagtgtctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgatgatggctgttctttttcatttgatctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattccataacacgagtatttgtggagaaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91253" stop="92190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91553" g_stop="91890" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E259956" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91553" e_stop="91890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGT-TCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACT</genome_strand>
        <mrna_strand>GACGCATCAACTTTAAGTTGCGTTAGCTTAATCCTCATGCTAGTAATTATTTACCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCACGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTGTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGATGATGGCTGTTCTTTTTCATTTGATCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCCATAACACGAGTATTTGTGGAGAACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E272359" ref_strand="+" ref_description="SGN-E272359 [cLEM-19-G13]">
      <seq>tcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91259" stop="92402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91559" g_stop="92102" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E272359" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91559" e_stop="92102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATG</genome_strand>
        <mrna_strand>TCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E251565" ref_strand="+" ref_description="SGN-E251565 [cLEG-9-B17]">
      <seq>caactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtcgagctgtgaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91260" stop="92383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91560" g_stop="92083" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E251565" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91560" e_stop="92083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATA</genome_strand>
        <mrna_strand>CAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCGAGCTGTGAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E697297" ref_strand="+" ref_description="SGN-E697297 [FA02AE09]">
      <seq>cgtttaagcctcgtgctaacaattatttatccgtttagctatcttacttgaactattatttgaatattagtagtttttttcaggtgaacaagattcacatctaaaatgtcatataaaaagccatctaaaaataagttctgcgtaagaaccattagcaaggcataaccaaggcttcaaccatatgtctcttcttgtcgatggctgttctttttcatttgttctcatggctcttttacttggaaaatattgccgtctcttcgttgtggatgagttaattccttttaagttaattctatggtatgagtatttgtggaatgccacttcgtttctcttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccgtctgggaagtgtattttaggcaggtttgggattttgactgttgaattacttccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctctttgtttctgattcatgctgtctggagtcctaccttgcggttgggagtgttgctcagttgatgcatggatgttacctggtgtgttcaagttttgtttgtgctgttgctgctgttgaagttgaagatctgaagatgcgtctgctgctgttggaagttaaatcatttcggtcacactgttggtttgttcctgttacatttggaaaccctcagaacttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91278" stop="92604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91577" g_stop="92304" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E697297" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91577" e_stop="92304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAA-C-TATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGG--AA-A-T----T-ACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATA--TCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTC--AACTTTTAA</genome_strand>
        <mrna_strand>CGTTTAAGCCTCGTGCTAACAATTATTTATCCGTTTAGCTATCTTACTTGAACTATTATTTGAATATTAGTA-GTTTTTTTCAGGTGAACAAGATTCACATCT-AAA-ATGTCATATAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTAGCAAGGCATAACCAAGGCTTCAACCATATGTCTCTTCTTGTCGATGGCTGTTCTTTTTCATTTGTTCTCATGGCTCTTTTACTTGGAAAATATTGCCGTCTCTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATGGTATGAGTATTTGTGGAATGCCACTTCGTTTCTCTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCGTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTACTTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTCTTTGTTTCTGATTCATGCTGTCTGGAGTCCTACCTTGCGGTTGGGAGTGTTGCTCAGTTGATGCATGGATG--TTACCTGGTGTGTTCAAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTCTGCTGCTGTTGGAAGTTAAATCATTTCGGTCACACTGTTGGTTTGTTCCTGTTACATTTGGAAACCCTCAGAACTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E318909" ref_strand="+" ref_description="SGN-E318909 [cTOB-11-J15]">
      <seq>ttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91280" stop="92463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91580" g_stop="92163" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E318909" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91580" e_stop="92163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACC</genome_strand>
        <mrna_strand>TTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E316778" ref_strand="+" ref_description="SGN-E316778 [cTOB-6-I11]">
      <seq>aattatttagccgcctatctgtctttcttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91323" stop="92352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91597" g_stop="92052" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E316778" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91597" e_stop="92052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGA</genome_strand>
        <mrna_strand>AATTATTTAGCCGCCTATCTGTCTTTCTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E702907" ref_strand="+" ref_description="SGN-E702907 [FA20AB06]">
      <seq>attatttatccgtttagctatcaaacttgaactattatttgaatattagtagtttttttcaggtgaacaagattcacatctaaaatgtcttataaaaagccatctaaaaataagttctgcgtaagaaccattagcaaggcataaccaaggcttcaaccatatgtctcttcttgtcgatggctgttctttttcatttgttctcatggctcttttacttggaaaatattgccgtctcttcgttgtggatgagttaattccttttaagttaattctatggtatgagtatttgtggaatgccacttcgtttctcttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccgtctgggaagtgtattttaggcaggtttgggattttgactgttgaattacttccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctctttgtttctgattcatgctgtctggagtcctaccttgcggttgggagtgttgctcagttgatgcatggatgttacctggtgtgttcaagttttgtttgtgctgttgctgctgttgaagttgaagatctgaagatgcgtctgctgctgttggaagttaaatcatttcggtcacactgttggtttgttcctgttacatttggaaacactcagaacttttaactcatgaacttgttgctcttgcttgtttgaatctgtggtatgcatcattaacacagtatggtagcctggttattcttctcctgctgtactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattataatgctactcatgagttccaattgtttctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91298" stop="92781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91598" g_stop="92466" g_length="869"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="882" r_length="882" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92595" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="883" r_stop="898" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E702907" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91598" e_stop="92466"/>
          <exon e_start="92580" e_stop="92595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAA-C-TATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGG--AA-A-T----T-ACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATA--TCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTC--AACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTAC</genome_strand>
        <mrna_strand>ATTATTTATCCGTTTAGCTATCAAACTTGAACTATTATTTGAATATTAGTA-GTTTTTTTCAGGTGAACAAGATTCACATCTAA-A-ATGTCTTATAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTAGCAAGGCATAACCAAGGCTTCAACCATATGTCTCTTCTTGTCGATGGCTGTTCTTTTTCATTTGTTCTCATGGCTCTTTTACTTGGAAAATATTGCCGTCTCTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATGGTATGAGTATTTGTGGAATGCCACTTCGTTTCTCTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCGTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTACTTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTCTTTGTTTCTGATTCATGCTGTCTGGAGTCCTACCTTGCGGTTGGGAGTGTTGCTCAGTTGATGCATGGATG--TTACCTGGTGTGTTCAAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTCTGCTGCTGTTGGAAGTTAAATCATTTCGGTCACACTGTTGGTTTGTTCCTGTTACATTTGGAAACACTCAGAACTTTTAACTCATGAACTTGTTGCTCTTGCTTGTTTGAATCTGTGGTATGCATCATTAACACAGTATGGTAGCCTGGTTATTCTTCTCCTGCTGTACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATAATGCTACTCATGAG.................................................................................................................TTCCAATTGTTTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E251893" ref_strand="+" ref_description="SGN-E251893 [cLEG-14-A23]">
      <seq>aaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91320" stop="92460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91620" g_stop="92160" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E251893" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91620" e_stop="92160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTT</genome_strand>
        <mrna_strand>AAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E318802" ref_strand="+" ref_description="SGN-E318802 [cTOB-11-J5]">
      <seq>ttgaactgtgatttgaatattagcaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtcaaaagccatctaaaaataagttctgcgtaagaaccattgccatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattgcttttaagttaattctatagtaggagtatttgcggagagccactttgattcttttaaatcgtgatgtcaatgtttcaatctatggagatgccgattatggctccccttttgtgtaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91324" stop="92265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91624" g_stop="91965" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E318802" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91624" e_stop="91965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCT</genome_strand>
        <mrna_strand>TTGAACTGTGATTTGAATATTAGCAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTCAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGCCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTGCTTTTAAGTTAATTCTATAGTAGGAGTATTTGCGGAGAGCCACTTTGATTCTTTTAAATCGTGATGTCAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E247508" ref_strand="+" ref_description="SGN-E247508 [cLEF-42-K17]">
      <seq>agattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91368" stop="92474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91668" g_stop="92174" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E247508" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91668" e_stop="92174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCT</genome_strand>
        <mrna_strand>AGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E707645" ref_strand="+" ref_description="SGN-E707645 [FA33CD04]">
      <seq>ttcacatctaaaatcgtcttataaaaagccatctaaaaataagttctgcgtaagaaccattagcaaggcataaccaaggcttcaaccatatgtctcttcttgtcgatggctgttctttttcatttgttctcatggctcttttacttggaaaatattgccgtctcttcgttgtggatgagttaattccttttaagttaattctatggtatgagtatttgtggaatgccacttcgtttctcttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccgtctgggaagtgtattttaggcaggtttgggattttgactgttgaattacttccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctctttgtttctgattcatgctgtctggagtcctaccttgcggttgggagtgttgctcagttgatgcatggatgttacctggtgtgttcaagttttgtttgtgctgttgctgctgttgaagttgaagatctgaagatgcgtctgctgctgttggaagttaaatcatttcggtcacactgttggtttgttcctgttacatttggaaacactcagaacttttaactcatgaacttgttgctcttgcttgtttgaatctgtggtatgcatcattaacacagtatggtagcctggttattcttctcctgctgtactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattataatgctactcatgagttccgattgtttctactagactggaatgtaaggcatgttttcatgtatgacaattcacagttctcatgaagaccatgtggtgcatttaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91371" stop="92972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91671" g_stop="92466" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="811" r_length="811" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92672" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="902" r_length="91" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E707645" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91671" e_stop="92466"/>
          <exon e_start="92580" e_stop="92672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAAC--TATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGG--AA-A-T----T-ACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATA--TCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTC--AACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGG-ATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATT</genome_strand>
        <mrna_strand>TTCACATCTAAAAT-CGTCTTATAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTAGCAAGGCATAACCAAGGCTTCAACCATATGTCTCTTCTTGTCGATGGCTGTTCTTTTTCATTTGTTCTCATGGCTCTTTTACTTGGAAAATATTGCCGTCTCTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATGGTATGAGTATTTGTGGAATGCCACTTCGTTTCTCTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCGTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTACTTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTCTTTGTTTCTGATTCATGCTGTCTGGAGTCCTACCTTGCGGTTGGGAGTGTTGCTCAGTTGATGCATGGATG--TTACCTGGTGTGTTCAAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTCTGCTGCTGTTGGAAGTTAAATCATTTCGGTCACACTGTTGGTTTGTTCCTGTTACATTTGGAAACACTCAGAACTTTTAACTCATGAACTTGTTGCTCTTGCTTGTTTGAATCTGTGGTATGCATCATTAACACAGTATGGTAGCCTGGTTATTCTTCTCCTGCTGTACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATAATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGACTGGAATGTAAGGCATGTTTTCATG---TATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E245417" ref_strand="+" ref_description="SGN-E245417 [cLEF-53-J20]">
      <seq>taaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgttgagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcanttgatgcatggatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91393" stop="92460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91693" g_stop="92160" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E245417" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91693" e_stop="92160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTT</genome_strand>
        <mrna_strand>TAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTTGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCANTTGATGCATGGATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E321196" ref_strand="+" ref_description="SGN-E321196 [cTOB-13-F20]">
      <seq>ccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91400" stop="92503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91700" g_stop="92203" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E321196" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91700" e_stop="92203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGA</genome_strand>
        <mrna_strand>CCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E275763" ref_strand="+" ref_description="SGN-E275763 [cLEN-18-C4]">
      <seq>taagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91411" stop="92423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91711" g_stop="92123" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E275763" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91711" e_stop="92123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGT</genome_strand>
        <mrna_strand>TAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E247854" ref_strand="+" ref_description="SGN-E247854 [cLEF-47-O5]">
      <seq>gtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaactttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91421" stop="92603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91721" g_stop="92303" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E247854" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91721" e_stop="92303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTA</genome_strand>
        <mrna_strand>GTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E329776" ref_strand="+" ref_description="SGN-E329776 [cTOD-3-E2]">
      <seq>aaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttatgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91426" stop="92562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91726" g_stop="92262" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E329776" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91726" e_stop="92262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACT</genome_strand>
        <mrna_strand>AACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTATGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E250078" ref_strand="+" ref_description="SGN-E250078 [cLEG-4-E8]">
      <seq>tgtcatggcataaccaaggcttcaactatgtctcttattgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctcccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91432" stop="92254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91732" g_stop="91954" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E250078" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91732" e_stop="91954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTT</genome_strand>
        <mrna_strand>TGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTATTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E258109" ref_strand="+" ref_description="SGN-E258109 [cLEG-48-F7]">
      <seq>gcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcacttgatgcatggatgttttacctggtgcgttctaattttgtttgtgctgttgctgctgttgaaattgaaaacctgaagatgcgtttgctgctgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91439" stop="92538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91739" g_stop="92238" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E258109" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91739" e_stop="92238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGG</genome_strand>
        <mrna_strand>GCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCACTTGATGCATGGATGTTTTACCTGGTGCGTTCTAATTTTGTTTGTGCTGTTGCTGCTGTTGAAATTGAAAACCTGAAGATGCGTTTGCTGCTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E300831" ref_strand="+" ref_description="SGN-E300831 [cLEW-8-M24]">
      <seq>gcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcggtgtggatgagttaattccttttaagttaattctatagtcggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtcttttaggcaggtttgggattttgactgttgaattaatttcgcgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggactatctgtgtttctgattcatgctgactggggtcccaccttgtggtggggagtgttgctcacgtgatgcatggatgttttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91439" stop="92463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91739" g_stop="92163" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E300831" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91739" e_stop="92163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACC</genome_strand>
        <mrna_strand>GCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGGTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTCGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTCTTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTTCGCGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGACTATCTGTGTTTCTGATTCATGCTGACTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCACGTGATGCATGGATGTTTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E203147" ref_strand="+" ref_description="SGN-E203147 [cLEB-3-D4]">
      <seq>gcacgagtatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttacgcaggtttgggattgtgactgttgaattaattccgtgtactgggtagatcttgtttctgattggatgatggaaaatttgcaacttagaacttgggaatatctgtgtttctgattcaagctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91454" stop="92458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91750" g_stop="92158" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E203147" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91750" e_stop="92158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTT</genome_strand>
        <mrna_strand>GC-ACGAGTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTACGCAGGTTTGGGATTGTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTTTCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTGTGTTTCTGATTCAAGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E277240" ref_strand="+" ref_description="SGN-E277240 [cLEL-3-A24]">
      <seq>gcacgagtatgtctcttcttgttgatggctgttctttttcatttgttctcacggcgtgctgtgcacttggaaattacttcgttgcggccgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91454" stop="92408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91750" g_stop="92108" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E277240" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91750" e_stop="92108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGC-T-CT-TTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCT</genome_strand>
        <mrna_strand>GC-ACGAGTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCGTGCTGTGCACTTGGAAATTACTTCGTTGCGGCCGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E246032" ref_strand="+" ref_description="SGN-E246032 [cLEF-54-E8]">
      <seq>cgaggtctcttcttgttgatggctgttctttttcatttgttctcacggctcttgcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91457" stop="92699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91757" g_stop="92399" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E246032" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91757" e_stop="92399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACT</genome_strand>
        <mrna_strand>CGAGGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTGCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E313383" ref_strand="+" ref_description="SGN-E313383 [cTOA-13-E19]">
      <seq>ttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcagcttttaactcctaaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91472" stop="92616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91772" g_stop="92316" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E313383" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91772" e_stop="92316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTG</genome_strand>
        <mrna_strand>TTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAGCTTTTAACTCCTAAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E313324" ref_strand="+" ref_description="SGN-E313324 [cTOA-13-E12]">
      <seq>ttgacggctgttctttttcatttgttctcacggctctgtcacttggaaattacttcgttgtggatgagttaactcctttcaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtcaatgtttcaatctatggagatgccgattatggctccccttttgtgtccccttctgggaagtgtattgtaggcaggcctgggattatgactgttgaattaatctccgtgtactgggtagatcttgtgtctgattggatgatggaaaatttgcaactcagaacttgggaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91472" stop="92383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91772" g_stop="92083" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E313324" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91772" e_stop="92083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAAT-TCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATA</genome_strand>
        <mrna_strand>TTGACGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTGTCACTTGGAAATTACTTCGTTGTGGATGAGTTAACTCCTTTCAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTCAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTCCCCTTCTGGGAAGTGTATTGTAGGCAGGCCTGGGATTATGACTGTTGAATTAATCTCCGTGTACTGGGTAGATCTTGTGTCTGATTGGATGATGGAAAATTTGCAACTCAGAACTTGGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E249367" ref_strand="+" ref_description="SGN-E249367 [cLEF-50-M2]">
      <seq>tgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaaaatgcgtttgctgctgttggaagttaaatcattttggtcacacttgtgggttggtcctgttacatttggaaacactcaacttttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91473" stop="92605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91773" g_stop="92305" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E249367" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91773" e_stop="92305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAAC</genome_strand>
        <mrna_strand>TGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAAATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTTGTGGGTTGGTCCTGTTACATTTGGAAACACTCAACTTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E317812" ref_strand="+" ref_description="SGN-E317812 [cTOA-30-B7]">
      <seq>ttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91496" stop="92930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91796" g_stop="92466" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92630" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="724" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E317812" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91796" e_stop="92466"/>
          <exon e_start="92580" e_stop="92630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATG</genome_strand>
        <mrna_strand>TTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGAT-AATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E249744" ref_strand="+" ref_description="SGN-E249744 [cLEF-57-G6]">
      <seq>aaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcaattgatgcatggatgttttacctggtgcgttctaattttgtttgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91518" stop="92489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91818" g_stop="92189" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E249744" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91818" e_stop="92189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCT</genome_strand>
        <mrna_strand>AAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAATTGATGCATGGATGTTTTACCTGGTGCGTTCTAATTTTGTTTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E267884" ref_strand="+" ref_description="SGN-E267884 [cLEI-12-F15]">
      <seq>ttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttacaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgttagcgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgatcctgttacattcggaaacactcaacttttcactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91529" stop="92700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91829" g_stop="92400" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E267884" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91829" e_stop="92400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTC</genome_strand>
        <mrna_strand>TTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTACAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTAGCGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGATCCTGTTACATTCGGAAACACTCAACTTTTCACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E377137" ref_strand="+" ref_description="SGN-E377137 [TUS-21-E19]">
      <seq>ttccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91544" stop="92898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91844" g_stop="92466" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92598" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="645" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E377137" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91844" e_stop="92466"/>
          <exon e_start="92580" e_stop="92598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAG</genome_strand>
        <mrna_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E236571" ref_strand="+" ref_description="SGN-E236571 [cLED-13-K14]">
      <seq>ttccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91544" stop="92670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91844" g_stop="92370" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E236571" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91844" e_stop="92370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCC</genome_strand>
        <mrna_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E243922" ref_strand="+" ref_description="SGN-E243922 [cLED-35-N15]">
      <seq>ttccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91544" stop="92650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91844" g_stop="92350" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E243922" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91844" e_stop="92350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATC</genome_strand>
        <mrna_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E241609" ref_strand="+" ref_description="SGN-E241609 [cLED-36-O1]">
      <seq>ttccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgctgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91544" stop="92617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91844" g_stop="92317" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E241609" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91844" e_stop="92317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGT</genome_strand>
        <mrna_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGCTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E237560" ref_strand="+" ref_description="SGN-E237560 [cLED-19-B12]">
      <seq>ttccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91544" stop="92561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91844" g_stop="92261" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E237560" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91844" e_stop="92261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACAC</genome_strand>
        <mrna_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E235322" ref_strand="+" ref_description="SGN-E235322 [cLED-11-K20]">
      <seq>ttccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91544" stop="92499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91844" g_stop="92199" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E235322" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91844" e_stop="92199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTG</genome_strand>
        <mrna_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E228155" ref_strand="+" ref_description="SGN-E228155 [cLED-2-A9]">
      <seq>ttccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttacaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagccgatgcatggatgttttacctggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91544" stop="92469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91844" g_stop="92169" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E228155" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91844" e_stop="92169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGC</genome_strand>
        <mrna_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTACAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGCCGATGCATGGATGTTTTACCTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E368150" ref_strand="+" ref_description="SGN-E368150 [TUS-22-G14]">
      <seq>ttccttttaagttaattctatagtaggagtatttgtggagagccactttgcttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcttcttataacttgcgaatatctttgtttctgattcatgctgtctggggtccccccttgtggtgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91544" stop="92431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91844" g_stop="92131" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E368150" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91844" e_stop="92131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGA</genome_strand>
        <mrna_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGCTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCTTCTTATAACTTGCGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCCCCTTGTGGTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E241875" ref_strand="+" ref_description="SGN-E241875 [cLED-27-O12]">
      <seq>ttccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91544" stop="92431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91844" g_stop="92131" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E241875" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91844" e_stop="92131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGA</genome_strand>
        <mrna_strand>TTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E305797" ref_strand="+" ref_description="SGN-E305797 [cLEX-14-F3]">
      <seq>agagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91582" stop="92764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91882" g_stop="92464" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E305797" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91882" e_stop="92464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATG</genome_strand>
        <mrna_strand>AGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E319324" ref_strand="+" ref_description="SGN-E319324 [cTOB-16-P14]">
      <seq>tttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91594" stop="92764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91894" g_stop="92464" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E319324" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91894" e_stop="92464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATG</genome_strand>
        <mrna_strand>TTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E245474" ref_strand="+" ref_description="SGN-E245474 [cLEF-43-M23]">
      <seq>aaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91614" stop="92700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91914" g_stop="92400" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E245474" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91914" e_stop="92400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTC</genome_strand>
        <mrna_strand>AAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E247151" ref_strand="+" ref_description="SGN-E247151 [cLEF-46-B23]">
      <seq>ttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaagcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91620" stop="92764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91920" g_stop="92464" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E247151" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91920" e_stop="92464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATG</genome_strand>
        <mrna_strand>TTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAAGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E577626" ref_strand="-" ref_description="SGN-E577626 [LE15AH09]">
      <seq>atctatggagatgccgattatggctccccttctgtgtagccgtctgggaagtgtattttaggcaggtttgggattttgactgttgaattacttccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctctttgtttctgattcatgctgtctggagtcctaccttgcggttgggagtgttgctcagttgatgcatggatgttacctggtgtgttcaagttttgtttgtgctgttgctgctgttgaagttgaagatctgaagatgcgtctgctgctgttggaagttaaatcatttcggtcacactgttggtttgttcctgttacatttggaaacactcagaacttttaactcatgaacttgttgctcttgcttgtttgaatctgtggtatgcatcattaacacagtatggtagcctggttattcttctcctgctgtactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattataatgctactcatgagttccgattgtttctactagactggaatgtaaggcatgttttcatgtatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttttattcaatattgaagttattatttttggttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91624" stop="93058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91924" g_stop="92466" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92760" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="723" r_length="175" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E577626" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577626" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91924" e_stop="92466"/>
          <exon e_start="92580" e_stop="92760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATA--TCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTC--AACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGG-ATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACT</genome_strand>
        <mrna_strand>ATCTATGGAGATGCCGATTATGGCTCCCCTTCTGTGTAGCCGTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTACTTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTCTTTGTTTCTGATTCATGCTGTCTGGAGTCCTACCTTGCGGTTGGGAGTGTTGCTCAGTTGATGCATGGATG--TTACCTGGTGTGTTCAAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTCTGCTGCTGTTGGAAGTTAAATCATTTCGGTCACACTGTTGGTTTGTTCCTGTTACATTTGGAAACACTCAGAACTTTTAACTCATGAACTTGTTGCTCTTGCTTGTTTGAATCTGTGGTATGCATCATTAACACAGTATGGTAGCCTGGTTATTCTTCTCCTGCTGTACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATAATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGACTGGAATGTAAGGCATGTTTTCATG---TATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAG-T---TTTATTCAATATTGAAGTTATTATTTTTGGTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E542108" ref_strand="-" ref_description="SGN-E542108 [TUS-63-D24]">
      <seq>gagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91631" stop="93058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91931" g_stop="92466" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92760" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="720" r_length="181" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E542108" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542108" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91931" e_stop="92466"/>
          <exon e_start="92580" e_stop="92760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACT</genome_strand>
        <mrna_strand>GAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E283803" ref_strand="+" ref_description="SGN-E283803 [cLES-1-H13]">
      <seq>cgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagctgatgcatggatgttttacctggtgcgttctagttttgcttgtgctgttgctgctgttgaagttgaagatctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactggtgggttgatcctgttacatttggaaacactcaacttttaactgctaaacttgttgctgatgcttgtctgaatctgtcgtgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91638" stop="92648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91938" g_stop="92348" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E283803" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91938" e_stop="92348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCA</genome_strand>
        <mrna_strand>CGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGCTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGCTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGGTGGGTTGATCCTGTTACATTTGGAAACACTCAACTTTTAACTGCTAAACTTGTTGCTGATGCTTGTCTGAATCTGTCGTGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E306522" ref_strand="+" ref_description="SGN-E306522 [cLEX-13-D13]">
      <seq>agccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91661" stop="92764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91961" g_stop="92464" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E306522" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91961" e_stop="92464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATG</genome_strand>
        <mrna_strand>AGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E296722" ref_strand="-" ref_description="SGN-E296722 [cLEW-3-C1]">
      <seq>tttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctcaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggacacactcaacttttaactcctaaacgtgctgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttcaactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91680" stop="92975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91980" g_stop="92466" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92675" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="586" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E296722" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296722" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91980" e_stop="92466"/>
          <exon e_start="92580" e_stop="92675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCT</genome_strand>
        <mrna_strand>TTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTCAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGACACACTCAACTTTTAACTCCTAAACGTGCTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCAACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E309588" ref_strand="+" ref_description="SGN-E309588 [cLEY-26-C10]">
      <seq>attttgactggtgaattaattctgtgtactgggtagaatcttgtattctgattggatgaatggaaaatttgccaaccttagaaccttgggaatatctttgtttctgattcatgcctgtctggggtcccacccttgtggtggggagtgttgctcagttgatgcatggatgttttaccctggtgcgttctagttttgtttgtgcctgttgctgctgttgaagttgaagaccctgaagatccgtttgctgctgttggaagttaaatcattttggtcacacctgttgggttgttcctgttaccatttggaaaccacctcaaccttttacctcctaaaccttgttgctgttgcttgtctgaatctgtcgtgtgccatcattaacaccagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91696" stop="92949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91996" g_stop="92466" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92649" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="563" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E309588" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91996" e_stop="92466"/>
          <exon e_start="92580" e_stop="92649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAG-ATCTTGTA-TCTGATTGGATG-ATGGAAAATTTG-CAA-CTTAGAA-CTTGGGAATATCTTTGTTTCTGATTCATG-CTGTCTGGGGTCCCA-CCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTA-CCTGGTGCGTTCTAGTTTTGTTTGTG-CTGTTGCTGCTGTTGAAGTTGAAGA-TCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACA-CTGTTGGGTTGTTCCTGTTA-CATTTGGAAA-CA-CTCAA-CTTTTAACTCCTAAA-CTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTG-CATCATTAACA-CAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATG</genome_strand>
        <mrna_strand>ATTTTGACTGGTGAATTAATTCTGTGTACTGGGTAGAATCTTGTATTCTGATTGGATGAATGGAAAATTTGCCAACCTTAGAACCTTGGGAATATCTTTGTTTCTGATTCATGCCTGTCTGGGGTCCCACCCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCCTGGTGCGTTCTAGTTTTGTTTGTGCCTGTTGCTGCTGTTGAAGTTGAAGACCCTGAAGATCCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACCTGTTGGGTTGTTCCTGTTACCATTTGGAAACCACCTCAACCTTTTACCTCCTAAACCTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCCATCATTAACACCAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E247278" ref_strand="+" ref_description="SGN-E247278 [cLEF-46-K15]">
      <seq>attaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91710" stop="92634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92010" g_stop="92334" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E247278" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92010" e_stop="92334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGA</genome_strand>
        <mrna_strand>ATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E233733" ref_strand="+" ref_description="SGN-E233733 [cLED-14-G15]">
      <seq>agatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91730" stop="92763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92030" g_stop="92463" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E233733" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92030" e_stop="92463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCAT</genome_strand>
        <mrna_strand>AGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E339448" ref_strand="+" ref_description="SGN-E339448 [cTOF-4-L17]">
      <seq>gatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagtttattatttttggttttacttgtgagtttcagttttcgctctatttttttatttatttctagagtatgttccgtgtttgccgggagatgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91731" stop="93130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92031" g_stop="92466" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92830" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="694" r_length="255" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E339448" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92031" e_stop="92466"/>
          <exon e_start="92580" e_stop="92830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAG-TTATTATTTTTGGTTTTAC-TGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATG-TCCGTGTTTGCC-GGAGATGTTGT</genome_strand>
        <mrna_strand>GATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTTATTATTTTTGGTTTTACTTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTTCCGTGTTTGCCGGGAGATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E714663" ref_strand="+" ref_description="SGN-E714663 [FB12AD04]">
      <seq>atcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctctttgtttctgattcatgctgtctggagtcctaccttgcggttgggagtgttgctcagttgatgcatggatgttacctggtgtgttcaagttttgtttgtgctgttgctgctgttgaagttgaagatctgaagatgcgtctgctgctgttggaagttaaatcatttcggtcacactgttggtttgttcctgttacatttggaaacactcagaacttttaactcatgaacttgttgctcttgcttgtttgaatctgtggtatgcatcattaacacagtatggtagcctggttattcttctcctgctgtactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattataatgctactcatgagttccgattgtttctactagactggaatgtaaggcatgttttcatgtatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttttattcaatattgaagttattatttttggttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91732" stop="93058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92032" g_stop="92466" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92760" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="615" r_length="175" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E714663" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92032" e_stop="92466"/>
          <exon e_start="92580" e_stop="92760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATA--TCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTC--AACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGG-ATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACT</genome_strand>
        <mrna_strand>ATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTCTTTGTTTCTGATTCATGCTGTCTGGAGTCCTACCTTGCGGTTGGGAGTGTTGCTCAGTTGATGCATGGATG--TTACCTGGTGTGTTCAAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTCTGCTGCTGTTGGAAGTTAAATCATTTCGGTCACACTGTTGGTTTGTTCCTGTTACATTTGGAAACACTCAGAACTTTTAACTCATGAACTTGTTGCTCTTGCTTGTTTGAATCTGTGGTATGCATCATTAACACAGTATGGTAGCCTGGTTATTCTTCTCCTGCTGTACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATAATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGACTGGAATGTAAGGCATGTTTTCATG---TATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAG-T---TTTATTCAATATTGAAGTTATTATTTTTGGTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E543514" ref_strand="-" ref_description="SGN-E543514 [TUS-65-F23]">
      <seq>tgattggatgatgaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91742" stop="93232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92042" g_stop="92466" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92940" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="788" r_length="361" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E543514" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543514" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92042" e_stop="92466"/>
          <exon e_start="92580" e_stop="92940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATT</genome_strand>
        <mrna_strand>TGATTGGATGAT-GAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E542588" ref_strand="-" ref_description="SGN-E542588 [TUS-63-P14]">
      <seq>gattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91743" stop="93058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92043" g_stop="92466" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92760" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="608" r_length="181" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="609" polyA_stop="647"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E542588" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542588" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92043" e_stop="92466"/>
          <exon e_start="92580" e_stop="92760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACT</genome_strand>
        <mrna_strand>GATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E252081" ref_strand="-" ref_description="SGN-E252081 [cLEG-8-L2]">
      <seq>aaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91757" stop="93058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92057" g_stop="92466" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92760" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="594" r_length="181" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="610"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E252081" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252081" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92057" e_stop="92466"/>
          <exon e_start="92580" e_stop="92760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACT</genome_strand>
        <mrna_strand>AAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E306347" ref_strand="+" ref_description="SGN-E306347 [cLEX-13-B9]">
      <seq>acttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91766" stop="93093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92066" g_stop="92466" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92793" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="618" r_length="214" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E306347" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92066" e_stop="92466"/>
          <exon e_start="92580" e_stop="92793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTT</genome_strand>
        <mrna_strand>ACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E349083" ref_strand="+" ref_description="SGN-E349083 [cTOS-2-M12]">
      <seq>tttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggtttacgtcattttagtattataatatactatcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91786" stop="93220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92086" g_stop="92466" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92920" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="724" r_length="340" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E349083" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92086" e_stop="92466"/>
          <exon e_start="92580" e_stop="92920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAG</genome_strand>
        <mrna_strand>TTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGG-TTTACGTCATTTTAGTATTATAATATACTATCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E354788" ref_strand="+" ref_description="SGN-E354788 [cTOS-19-O9]">
      <seq>tttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91786" stop="92934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92086" g_stop="92466" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92634" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="439" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E354788" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92086" e_stop="92466"/>
          <exon e_start="92580" e_stop="92634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAA</genome_strand>
        <mrna_strand>TTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E226675" ref_strand="-" ref_description="SGN-E226675 [cLEL-26-E6]">
      <seq>ttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaaaatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcccagttctcatgaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91787" stop="92953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92087" g_stop="92466" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92660" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="464" r_length="81" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="479"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E226675" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226675" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92087" e_stop="92466"/>
          <exon e_start="92580" e_stop="92660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCG</genome_strand>
        <mrna_strand>TTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAAATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCCCAGTTCTCATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E320308" ref_strand="+" ref_description="SGN-E320308 [cTOB-21-J10]">
      <seq>ccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattncatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91818" stop="93118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92118" g_stop="92466" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92818" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="591" r_length="239" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E320308" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92118" e_stop="92466"/>
          <exon e_start="92580" e_stop="92818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGC</genome_strand>
        <mrna_strand>CCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTNCATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E279103" ref_strand="+" ref_description="SGN-E279103 [cLEL-4-M2]">
      <seq>gcacgagggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgccgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctccttgggggttttattaagcatattatgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91827" stop="92757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92120" g_stop="92457" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E279103" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92120" e_stop="92457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCT</genome_strand>
        <mrna_strand>GCACGAGGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGCCGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCTTGGGGGTTTTATTAAGCATATTATGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E226304" ref_strand="-" ref_description="SGN-E226304 [cLEL-26-E8]">
      <seq>tggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcccactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagcggatgtaaggcatgttttcatcatatatgacaattcacagttctcatgaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91823" stop="92953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92123" g_stop="92466" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92660" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="428" r_length="81" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="443"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E226304" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226304" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92123" e_stop="92466"/>
          <exon e_start="92580" e_stop="92660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCG</genome_strand>
        <mrna_strand>TGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCCCACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGCGGATGTAAGGCATGTTTTCATCATATATGACAATTCACAGTTCTCATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E245574" ref_strand="+" ref_description="SGN-E245574 [cLEF-43-G13]">
      <seq>ggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91824" stop="93101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92124" g_stop="92466" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92801" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="568" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E245574" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92124" e_stop="92466"/>
          <exon e_start="92580" e_stop="92801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAG</genome_strand>
        <mrna_strand>GGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E549684" ref_strand="-" ref_description="SGN-E549684 [TUS-6-O11]">
      <seq>tggggagtgttgctcagttgatgcatggatgtttaccctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaatgcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagatatgtggttacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91826" stop="93236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92126" g_stop="92466" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92936" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="700" r_length="356" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E549684" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549684" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92126" e_stop="92466"/>
          <exon e_start="92580" e_stop="92936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGAT</genome_strand>
        <mrna_strand>TGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTACCCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAATGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGATA-TGTGGTTACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E212389" ref_strand="+" ref_description="SGN-E212389 [cLEC-74-B5]">
      <seq>ggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaggttttacgtcattttagtattatatatactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91829" stop="93216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92129" g_stop="92466" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92916" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="676" r_length="335" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E212389" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92129" e_stop="92466"/>
          <exon e_start="92580" e_stop="92916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTAT</genome_strand>
        <mrna_strand>GGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGT-AAAGGTTTTACGTCATTTTAGTATTAT-ATATACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E307528" ref_strand="+" ref_description="SGN-E307528 [cLEY-24-H13]">
      <seq>ttgctcagttgatgcatggatgttttacctggtgcgttctagtgttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgaggtaaatcatctgtcttatagaagatattcttctttttctgtctgttaatattttgctgaattcgggtatttttgtattttatttactctattggtatttttccctgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91835" stop="92876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92135" g_stop="92576" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E307528" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92135" e_stop="92576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTG</genome_strand>
        <mrna_strand>TTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTGTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTTTTTCTGTCTGTTAATATTTTGCTGAATTCGGGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E228351" ref_strand="+" ref_description="SGN-E228351 [cLED-3-O3]">
      <seq>tgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91836" stop="92996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92136" g_stop="92466" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92696" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="451" r_length="117" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E228351" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92136" e_stop="92466"/>
          <exon e_start="92580" e_stop="92696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATT</genome_strand>
        <mrna_strand>TGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E544325" ref_strand="-" ref_description="SGN-E544325 [TUS-66-J15]">
      <seq>tcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcaccgagtttgatcaaatacttttttcttaaagagtgttcgttattataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91839" stop="93339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92139" g_stop="92466" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="93048" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="801" r_length="470" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E544325" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544325" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92139" e_stop="92466"/>
          <exon e_start="92580" e_stop="93048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCA-CGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAG</genome_strand>
        <mrna_strand>TCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACCGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E207108" ref_strand="+" ref_description="SGN-E207108 [cLEC-30-A5]">
      <seq>atgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttgaggttttattaagcatattatgatgctactcatgaggtaaatcatctgtcttatagaagatattcttctttttctgtctgttaatattttgctgaattcgtgtatttttgtattttatttactctattggtatttttccctgtctgcagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91854" stop="93060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92154" g_stop="92760" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E207108" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92154" e_stop="92760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACT</genome_strand>
        <mrna_strand>ATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGAGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTTTTTCTGTCTGTTAATATTTTGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E236016" ref_strand="+" ref_description="SGN-E236016 [cLED-16-M8]">
      <seq>atgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91854" stop="92975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92154" g_stop="92466" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92675" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="412" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E236016" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92154" e_stop="92466"/>
          <exon e_start="92580" e_stop="92675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCT</genome_strand>
        <mrna_strand>ATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E240089" ref_strand="+" ref_description="SGN-E240089 [cLED-32-C6]">
      <seq>tgttttacctggtgcgttctagttttgtttgagctgttggtgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91855" stop="92694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92155" g_stop="92394" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E240089" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92155" e_stop="92394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACT</genome_strand>
        <mrna_strand>TGTTTTACCTGGTGCGTTCTAGTTTTGTTTGAGCTGTTGGTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E228368" ref_strand="+" ref_description="SGN-E228368 [cLED-3-F17]">
      <seq>ttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctactgatatactgcactcaaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgaattcccattgtttctactaaagtggatgtaaggcatgttttcatgatatatgacaattcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91857" stop="92940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92157" g_stop="92466" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92640" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="375" r_length="61" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E228368" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92157" e_stop="92466"/>
          <exon e_start="92580" e_stop="92640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTC-AAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACA</genome_strand>
        <mrna_strand>TTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTACTGATATACTGCACTCAAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAA.................................................................................................................TTCCCATTGTTTCTACTAAAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E242416" ref_strand="+" ref_description="SGN-E242416 [cLED-30-M10]">
      <seq>tggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91864" stop="92995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92164" g_stop="92466" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92695" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="422" r_length="116" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E242416" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92164" e_stop="92466"/>
          <exon e_start="92580" e_stop="92695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGAT</genome_strand>
        <mrna_strand>TGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E301189" ref_strand="-" ref_description="SGN-E301189 [cLEW-22-N1]">
      <seq>ttgtttgtgctgttgccgctgttgaagtttaaaacctgaaaatgcgtttgctgctgttgaaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactccaaaacttgttgctgttgcttgtctgaatttgtcgtgtgcatcattaacacagtatggtagcctggtcattcttttcctgaaaaactgcactcaaagaacttgtagcaaataaattttctcccttggggttttattaagcatattataatgctactcatgagttccgattgtttctacaaaagtggatgtaaggcatgttttcatgatatatgccaattcacagttctcatggagaccatgtggggcatttaatttttccttttttgaaaaagcagatttgccgtacctaatggtttgcagttccatttattcaaaattaaagtcattattttctggttttcaaaaaaaaaaacaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91879" stop="93057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92179" g_stop="92466" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92760" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="472" r_length="181" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="507"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E301189" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301189" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92179" e_stop="92466"/>
          <exon e_start="92580" e_stop="92760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACT</genome_strand>
        <mrna_strand>TTGTTTGTGCTGTTGCCGCTGTTGAAGTTTAAAACCTGAAAATGCGTTTGCTGCTGTTGAAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCAAAACTTGTTGCTGTTGCTTGTCTGAATTTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTTTCCTGAAAAACTGCACTCAAAGAACTTGTAGCAAATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATAATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACAAAAGTGGATGTAAGGCATGTTTTCATGATATATGCCAATTCACAGTTCTCATGGAGACCATGTGGGGCATTTAATTTTTCCTTTTTTGAAAAAGCAGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAAAATTAAAGTCATTATTTTCTGGTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E377136" ref_strand="-" ref_description="SGN-E377136 [TUS-21-E19]">
      <seq>gtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtttgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcatttttttcctgatatactgcactcaaaaaacttgtaacaaataaattttttcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttttactaaagtggatgtaaggcatgttttcataatatatgacaattcccagttttcatgaaaaccatgtggggcatttaatttttcctcttttgaaaatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctttatttttttatttatttttaaagtatgtccgtgtttgccggaaatgttgtcccatggaagtatttgttgaaattagcatggggggtgtcctttggggtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttaaatttttatacctttttgggggcggttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91924" stop="93278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92224" g_stop="92466" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92967" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="634" r_length="388" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="678"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E377136" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377136" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92224" e_stop="92466"/>
          <exon e_start="92580" e_stop="92967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTC---AAAGTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACT</genome_strand>
        <mrna_strand>GTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTTTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTTTTTTCCTGATATACTGCACTCAAAAAACTTGTAACAAATAAATTTTTTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTTTACTAAAGTGGATGTAAGGCATGTTTTCATAATATATGACAATTCCCAGTTTTCATGAAAACCATGTGGGGCATTTAATTTTTCCTCTTTTGAAAATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTTTATTTTTTTATTTATTTTTAAAGTATGTCCGTGTTTGCCGGAAATGTTGTCCCATGGAAGTATTTGTTGAAATTAGCATGGGGGGTGTCCTTTGGGGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAAATTTTTATACCTTTTTGGGGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E353617" ref_strand="+" ref_description="SGN-E353617 [cTOS-10-E11]">
      <seq>ttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcacgagtttgatcaaatacttttttcttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91935" stop="93323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92235" g_stop="92466" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="93025" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="681" r_length="446" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E353617" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92235" e_stop="92466"/>
          <exon e_start="92580" e_stop="93025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGT</genome_strand>
        <mrna_strand>TTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E375252" ref_strand="-" ref_description="SGN-E375252 [TUS-34-H23]">
      <seq>aatcattttggtcacactgtggggttgttcctgtacattttgaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcacgagtttgatcaaatacttttttcttaaagagtgttcgttattataactctgaaaaaaaaaaaaaaaaaactcgagactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91945" stop="93347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92245" g_stop="92466" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="93047" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="692" r_length="468" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="693" polyA_stop="708"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E375252" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375252" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92245" e_stop="92466"/>
          <exon e_start="92580" e_stop="93047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAA</genome_strand>
        <mrna_strand>AATCATTTTGGTCACACTGTGGGGTTGTTCCTG-TACATTTTGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E200360" ref_strand="-" ref_description="SGN-E200360 [cLEC-1-O15]">
      <seq>tgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgccaattcccagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtctgcagttccatttattcaatattgaaaaaattatttttggttttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91962" stop="93039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92262" g_stop="92466" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92760" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="389" r_length="181" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="410"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E200360" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200360" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92262" e_stop="92466"/>
          <exon e_start="92580" e_stop="92760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACT</genome_strand>
        <mrna_strand>TGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGCCAATTCCCAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTCTGCAGTTCCATTTATTCAATATTGAAAAAATTATTTTTGGTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E352903" ref_strand="+" ref_description="SGN-E352903 [cTOS-11-N21]">
      <seq>aaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91988" stop="93231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92288" g_stop="92466" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92931" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="534" r_length="352" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E352903" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92288" e_stop="92466"/>
          <exon e_start="92580" e_stop="92931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTT</genome_strand>
        <mrna_strand>AAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E352672" ref_strand="+" ref_description="SGN-E352672 [cTOS-11-C10]">
      <seq>aaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaagggtttacgtcattttagtattataatatactatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91988" stop="93219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92288" g_stop="92466" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92919" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="522" r_length="340" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E352672" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92288" e_stop="92466"/>
          <exon e_start="92580" e_stop="92919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGA</genome_strand>
        <mrna_strand>AAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGGTTTACGTCATTTTAGTATTATAATATACTATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E258018" ref_strand="-" ref_description="SGN-E258018 [cLEG-48-L2]">
      <seq>actcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91992" stop="93058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92292" g_stop="92466" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92759" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="358" r_length="180" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E258018" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258018" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92292" e_stop="92466"/>
          <exon e_start="92580" e_stop="92759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTAC</genome_strand>
        <mrna_strand>ACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E276582" ref_strand="-" ref_description="SGN-E276582 [cLEN-17-L15]">
      <seq>cttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91998" stop="93232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92298" g_stop="92466" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92945" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="538" r_length="366" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E276582" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276582" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92298" e_stop="92466"/>
          <exon e_start="92580" e_stop="92945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGA</genome_strand>
        <mrna_strand>CTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E299571" ref_strand="-" ref_description="SGN-E299571 [cLEW-20-O8]">
      <seq>gtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgacagttgtactcactcacgagtttgatcaaatacttttttcttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92039" stop="93323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92339" g_stop="92466" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="93025" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="577" r_length="446" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E299571" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299571" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92339" e_stop="92466"/>
          <exon e_start="92580" e_stop="93025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGT</genome_strand>
        <mrna_strand>GTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGACAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E394215" ref_strand="-" ref_description="SGN-E394215 [TUS-42-N2]">
      <seq>gcatcattaacacagtatggtagcctggtcatttttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgttactcatgagttccgattgtttctactagagtggatgtaaggcatgtattcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattattttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcacgagtttgatcaaatacttttttttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92046" stop="122967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92346" g_stop="92466" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="93023" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="569" r_length="445" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93024" i_stop="94195" i_length="1172">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.617" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94196" g_stop="94202" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="576" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E394215" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394215" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92346" e_stop="92466"/>
          <exon e_start="92580" e_stop="93023"/>
          <exon e_start="94196" e_stop="94202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTA-TTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAACCAATGGTTCTGTTTACATGAGAGTTGATCATATTCCTACCAAAATGGATGACTTACAATTACCCTGGATATCATTTTTGGCTCTAATTTTTTTAATCCGGTAGTAGCTTTAAGTTATGTATTAATTATGACTTTAATTTTTAAGATAGATGCTGCTACCATTTGTTTAATGGCCTTATCTTCGTTAATTATCTAGCTGCTAAATTACTTTTTCGGATGGATCCAAGAGCTCGGTTTATGGTGGAGCGCTCGATGCTTGTTGTCGAGAGGTCGGTGGTTCGAATCCACCTGGATTCCTAATTGAAGTGGGGTATAAAGTGTATTTTATGGAGTCTTGAGCCTAAACCTTAACTAAAATTTTAAAAGGGTTTATGAGATTTTTTAAAAATCAAAATGGTAAAATTGTTTATAAAGTAGTGAATTTGTTCATATGAAAAAAAAAATCATAATGATTTTGAATAAGTCGGGTTATTTTTTTTTAATAAATCGCTGTCTCGGCCGTTGTTTAACGTTTATTTTTTTTAAATCATTGTCTTAGTAGAGATTTTAAGTGTAATTTATTTTTTATATTTTAAATAAATGTAGATTTTATGTTTAATTTTTTTAAAATTTAAGTAAATAGCAGCCAGCTTTGTTTTTTTAAATTTATTTTAAAAATTGTTCAAAAAACTAATTCTGTCTATTTTTGTGTAGTAAAATTTGTGCAAAAATTTTTGTTCAATTTTTCTCCAATCTTGTATTAATTTTTGAAGTTAATCACATGTCAACTTTATCAGAAAAAAATTGACATGTCAATTTTTTTTTAAAATTAATTTTTTTTAAAAAAATTCACATGCATTTATAAGAAAATGTCTATTCACATGCATTTATACGAGATCAAAAAAAACCCGAGAAAATCAAAAAAAGATTTTTTGCACAATTTTTACTATGTTAAAATTGGTAGGATTAATTTTTTGAGCGATTTAAAAAAAAAATTAATAAAAAACAAAAAATTTCTTATAAATACACGTGAATTGACAATATTTTTTATAGATGCATGTGAATTTATTTTATTTTTTTTTGTAAAAATTTGACATGCCAACTTCTTTTTGTAAAGTGGATATATGATTAACTTTAAAAATTAAAATATTTTTTAGAGAAAAA</genome_strand>
        <mrna_strand>GCATCATTAACACAGTATGGTAGCCTGGTCATTTTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGTTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTATTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTTTTTAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E394668" ref_strand="-" ref_description="SGN-E394668 [TUS-42-P2]">
      <seq>tcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattattttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcacgagtttgatcaaataaatttttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92074" stop="93323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92374" g_stop="92466" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="93023" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="541" r_length="445" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E394668" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394668" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92374" e_stop="92466"/>
          <exon e_start="92580" e_stop="93023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTA-TTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGA</genome_strand>
        <mrna_strand>TCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATAAATTTTTCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E258626" ref_strand="-" ref_description="SGN-E258626 [cLEG-50-G17]">
      <seq>tatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggtttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcacgagtttgatcaaatacttttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92096" stop="93318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92389" g_stop="92466" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="93018" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="521" r_length="440" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E258626" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258626" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92389" e_stop="92466"/>
          <exon e_start="92580" e_stop="93018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGG-TTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTT</genome_strand>
        <mrna_strand>TATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E356204" ref_strand="+" ref_description="SGN-E356204 [cTOS-20-F15]">
      <seq>aacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcacgaatttgatcaaatacttttttcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92102" stop="93320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92402" g_stop="92466" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="93020" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="506" r_length="441" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E356204" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92402" e_stop="92466"/>
          <exon e_start="92580" e_stop="93020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAA</genome_strand>
        <mrna_strand>AACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAATTTGATCAAATACTTTTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E353591" ref_strand="+" ref_description="SGN-E353591 [cTOS-15-H12]">
      <seq>aacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcacgagtttgatcaaatacttttttcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92102" stop="93320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92402" g_stop="92466" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="93020" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="506" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E353591" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92402" e_stop="92466"/>
          <exon e_start="92580" e_stop="93020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAA</genome_strand>
        <mrna_strand>AACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E225893" ref_strand="-" ref_description="SGN-E225893 [cLEL-17-P17]">
      <seq>agcagataaattttctcccttgggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcacgagtctgctcaaatacttttttcttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92109" stop="93321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92409" g_stop="92466" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="93021" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="499" r_length="442" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E225893" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225893" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92409" e_stop="92466"/>
          <exon e_start="92580" e_stop="93021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAA</genome_strand>
        <mrna_strand>AGCAGATAAATTTTCTCCCTT-GGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTCTGCTCAAATACTTTTTTCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E251222" ref_strand="-" ref_description="SGN-E251222 [cLEG-10-C9]">
      <seq>ttttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttttagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatataccctcgagttattgtggttccgaaaaaaaaaaaaaaaatgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92119" stop="93235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92419" g_stop="92466" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="92934" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="403" r_length="355" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="420"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E251222" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251222" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92419" e_stop="92466"/>
          <exon e_start="92580" e_stop="92934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACG</genome_strand>
        <mrna_strand>TTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTTTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACCCTCGAGTTATTGTGGTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E220243" ref_strand="-" ref_description="SGN-E220243 [cLEL-12-B16]">
      <seq>tggggttttatttaagcatattatgatgctactcatgagttccgattgtttctactagagtgaatgtaaggcatgttttcatgaaatatgccaattcacagttctcataaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatgaaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcaccagtttgatcaaatacttttttcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92129" stop="93323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92429" g_stop="92466" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="93023" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="483" r_length="444" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="484" polyA_stop="496"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E220243" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220243" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92429" e_stop="92466"/>
          <exon e_start="92580" e_stop="93023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTTTTA-TTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGA</genome_strand>
        <mrna_strand>TGGGGTTTTATTTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGAATGTAAGGCATGTTTTCATGAAATATGCCAATTCACAGTTCTCATAAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGAAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACCAGTTTGATCAAATACTTTTTTCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E283025" ref_strand="-" ref_description="SGN-E283025 [cLER-17-F21]">
      <seq>ttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgcggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccgaagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcacgagtttgatcaaatacttttttcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92134" stop="93323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92434" g_stop="92466" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="93023" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="477" r_length="444" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="491"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E283025" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283025" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92434" e_stop="92466"/>
          <exon e_start="92580" e_stop="93023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGA</genome_strand>
        <mrna_strand>TTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGAAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E301582" ref_strand="-" ref_description="SGN-E301582 [cLEW-23-P23]">
      <seq>gcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctctttagaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctattttattatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcacgagtttgatcaaatacttttttcttaaaaaaaaacggcacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92143" stop="93323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92443" g_stop="92466" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="93023" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="468" r_length="444" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E301582" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301582" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92443" e_stop="92466"/>
          <exon e_start="92580" e_stop="93023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGA</genome_strand>
        <mrna_strand>GCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTAGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTATTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E303444" ref_strand="+" ref_description="SGN-E303444 [cLEX-2-C5]">
      <seq>agttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctccttttttgaagatgctgatttgccgtacctaatggtttgcagctccatttattcaatattgaaggcattatttttggttttactgcgagtttcagatctcgctctattttttgatttatttctaaagtatgtccgtgtttgccggagatgttgtcccatggaagtatctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92278" stop="93149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92578" g_stop="92849" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E303444" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92578" e_stop="92849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTG</genome_strand>
        <mrna_strand>AGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTTTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGCTCCATTTATTCAATATTGAAGGCATTATTTTTGGTTTTACTGCGAGTTTCAGATCTCGCTCTATTTTTTGATTTATTTCTAAAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E225506" ref_strand="+" ref_description="SGN-E225506 [cLEL-17-P17]">
      <seq>atcaaactcgtgagtgagtacaactttggtgttacagtccccaaaaaggtataaaaatctaaaataatcgtaaccacaataactcgatagtatattataatactaaaatgacgtaaaaccttttacgccaaaggacacaccccatgctaatctcaacaaatacttccatgggacaacatctccggcaaacacggacatactctagaaataaataaaaaaatagagcgaaaactgaaactcacagtaaaaccaaaaataataacttcaatattgaataaatggaactgcaaaccattaggtacggcaaatcagcatcttcaaaagaggagaaattaaatgcaccacatggtcttcatgagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="93302" stop="92340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93002" g_stop="92640" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E225506" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93002" e_stop="92640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTCGTGAGTGAGTACAACTTTCATGTTACAGTCCCCAAAAAGGTATAAAAATCTAAAATAATCGTAACCACAATAACTCGATAGTATATTATAATACTAAAATGACGTAAAACCTTTTACGCCAAAGGACACACCCCATGCTAATCTCAACAAATACTTCCATGGGACAACATCTCCGGCAAACACGGACATACTCTAGAAATAAATAAAAAAATAGAGCGAAAACTGAAACTCACAGTAAAACCAAAAATAATAACTTCAATATTGAATAAATGGAACTGCAAACCATTAGGTACGGCAAATCAGCATCTTCAAAAGAGGAGAAATTAAATGCACCGCATGGTCTTCATGAGAACT</genome_strand>
        <mrna_strand>ATCAAACTCGTGAGTGAGTACAACTTTGGTGTTACAGTCCCCAAAAAGGTATAAAAATCTAAAATAATCGTAACCACAATAACTCGATAGTATATTATAATACTAAAATGACGTAAAACCTTTTACGCCAAAGGACACACCCCATGCTAATCTCAACAAATACTTCCATGGGACAACATCTCCGGCAAACACGGACATACTCTAGAAATAAATAAAAAAATAGAGCGAAAACTGAAACTCACAGTAAAACCAAAAATAATAACTTCAATATTGAATAAATGGAACTGCAAACCATTAGGTACGGCAAATCAGCATCTTCAAAAGAGGAGAAATTAAATGCACCACATGGTCTTCATGAGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E219527" ref_strand="+" ref_description="SGN-E219527 [cLEL-11-C14]">
      <seq>tccccaaaaaggtataaaaatctaaaataatcgtaaccacaataactcgatagtatattataatactaaaatgacgtaaaaccttttacgccaaaggacacaccccatgctaatcaaaacaaatactttcatgggacaacatgtacggcaaacacggacatactctagaaataaataaaaaaatagagcgaaaactgaaactcacagtaaaaccaaaaataataacttcaatattgaataaatggaactgcaaaccattaggtacggcaaatcagcatcttcaaaagaggagaaattaaatgcaccacatggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="93265" stop="92351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92965" g_stop="92651" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E219527" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92965" e_stop="92651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCAAAAAGGTATAAAAATCTAAAATAATCGTAACCACAATAACTCGATAGTATATTATAATACTAAAATGACGTAAAACCTTTTACGCCAAAGGACACACCCCATGCTAATCTCAACAAATACTTCCATGGGACAACATCTCCGGCAAACACGGACATACTCTAGAAATAAATAAAAAAATAGAGCGAAAACTGAAACTCACAGTAAAACCAAAAATAATAACTTCAATATTGAATAAATGGAACTGCAAACCATTAGGTACGGCAAATCAGCATCTTCAAAAGAGGAGAAATTAAATGCACCGCATGGTCT</genome_strand>
        <mrna_strand>TCCCCAAAAAGGTATAAAAATCTAAAATAATCGTAACCACAATAACTCGATAGTATATTATAATACTAAAATGACGTAAAACCTTTTACGCCAAAGGACACACCCCATGCTAATCAAAACAAATACTTTCATGGGACAACATGTACGGCAAACACGGACATACTCTAGAAATAAATAAAAAAATAGAGCGAAAACTGAAACTCACAGTAAAACCAAAAATAATAACTTCAATATTGAATAAATGGAACTGCAAACCATTAGGTACGGCAAATCAGCATCTTCAAAAGAGGAGAAATTAAATGCACCACATGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E278275" ref_strand="-" ref_description="SGN-E278275 [cLEL-2-C9]">
      <seq>catgtggtgcattaaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcacgagtttgatcaaatacttttttcttaaagagtgttcgttattataactctgaaagtcctgttttaaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92355" stop="93349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92655" g_stop="93062" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="426"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E278275" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278275" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92655" e_stop="93062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGT-TTGTTTTAAACCA</genome_strand>
        <mrna_strand>CATGTGGTGCATTAAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGTCCTGTTTTAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E278281" ref_strand="-" ref_description="SGN-E278281 [cLEL-2-C23]">
      <seq>tgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccgcagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacattaaagttgtactcactcacgagtttgatcaaatacttttttcttaaagagggttcgttattataactaaaaaagtcccgttttaaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92362" stop="93341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92662" g_stop="93062" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="403" polyA_stop="419"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E278281" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278281" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92662" e_stop="93062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGT-TTGTTTTAAACCA</genome_strand>
        <mrna_strand>TGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGCAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATTAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGGGTTCGTTATTATAACTAAAAAAGTCCCGTTTTAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E217815" ref_strand="+" ref_description="SGN-E217815 [cLEL-23-N2]">
      <seq>cggcaaacacggacatactctagaaataaataaaaaaaatagagcgaaaactgaaactcacagtaaaaccaaaaataataacttcaatattgaataaatggaactgcaaaccattaggtacggcaaatcagcatcttcaaaagaggagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="93120" stop="92370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92820" g_stop="92670" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E217815" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>151</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92820" e_stop="92670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAAACACGGACATACTCTAGAAATAAATAAA-AAAATAGAGCGAAAACTGAAACTCACAGTAAAACCAAAAATAATAACTTCAATATTGAATAAATGGAACTGCAAACCATTAGGTACGGCAAATCAGCATCTTCAAAAGAGGAGAAAT</genome_strand>
        <mrna_strand>CGGCAAACACGGACATACTCTAGAAATAAATAAAAAAAATAGAGCGAAAACTGAAACTCACAGTAAAACCAAAAATAATAACTTCAATATTGAATAAATGGAACTGCAAACCATTAGGTACGGCAAATCAGCATCTTCAAAAGAGGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E218315" ref_strand="-" ref_description="SGN-E218315 [cLEL-23-N2]">
      <seq>ctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctattttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcacgagtttgatcaaatacttttttcttaaagagtgttcgttattataactctgaaagtttgttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92391" stop="93363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92691" g_stop="93059" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="386"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E218315" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218315" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92691" e_stop="93059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTA-TTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAA</genome_strand>
        <mrna_strand>CTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E220161" ref_strand="-" ref_description="SGN-E220161 [cLEL-12-B16]">
      <seq>atggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccgaagatgttgtcccatgaaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcacgagtttgatcaaatacttttttcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92408" stop="93323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92708" g_stop="93023" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="317" polyA_stop="329"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E220161" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220161" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92708" e_stop="93023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGA</genome_strand>
        <mrna_strand>ATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGAAGATGTTGTCCCATGAAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E227897" ref_strand="-" ref_description="SGN-E227897 [cLEL-39-C15]">
      <seq>gtttgcagttccatttattcaatattgaagttattatttttggtttaactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcacgagtttgatcaaatacttttttcttaaagagtgttcgttattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92411" stop="93339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92711" g_stop="93035" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="343"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E227897" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227897" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92711" e_stop="93035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATT</genome_strand>
        <mrna_strand>GTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTAACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E278444" ref_strand="+" ref_description="SGN-E278444 [cLEL-2-E13]">
      <seq>taataacgacccctcttaagaaaaaagtattgataaactcgtgagtgagtacaactttatgttacagtccccagaaaggtataaaaatctaaaataatcgaaccacaataactcgatagtatattataatactaaaatgacgtaaaaccttttacgccaaaggacacaccatatgctaatctgaacaaatacttccatgggacaacatcttcggcaaacacggacatactctagaaataaataaaaaaatagagcgaaaactgaaactcacagtaaaaccaaaaataataacttcaatattgaataaatggaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="93336" stop="92415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93036" g_stop="92715" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E278444" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93036" e_stop="92715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAACGAACACTCTTTAAGAAAAAAGTATTTGATCAAACTCGTGAGTGAGTACAACTTTCATGTTACAGTCCCCAAAAAGGTATAAAAATCTAAAATAATCGTAACCACAATAACTCGATAGTATATTATAATACTAAAATGACGTAAAACCTTTTACGCCAAAGGACACACCCCATGCTAATCTCAACAAATACTTCCATGGGACAACATCTCCGGCAAACACGGACATACTCTAGAAATAAATAAAAAAATAGAGCGAAAACTGAAACTCACAGTAAAACCAAAAATAATAACTTCAATATTGAATAAATGGAACTGC</genome_strand>
        <mrna_strand>TAATAACGACCCCTC-TTAAGAAAAAAGTA-TTGAT-AAACTCGTGAGTGAGTACAACTTT-ATGTTACAGTCCCCAGAAAGGTATAAAAATCTAAAATAATCG-AACCACAATAACTCGATAGTATATTATAATACTAAAATGACGTAAAACCTTTTACGCCAAAGGACACACCATATGCTAATCTGAACAAATACTTCCATGGGACAACATCTTCGGCAAACACGGACATACTCTAGAAATAAATAAAAAAATAGAGCGAAAACTGAAACTCACAGTAAAACCAAAAATAATAACTTCAATATTGAATAAATGGAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E278445" ref_strand="-" ref_description="SGN-E278445 [cLEL-2-E15]">
      <seq>cagttccatttattcaatattagagttatcatattcggttttactgtcagtttcagttttcgctccatttttttatatatttctagagtatgtccgtgtttaccgtatatgctgtcccatgtaagtatttgtttagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatccagttattgtggttccgattattttagactattatacctctttggggactgtaacattaacgttgtactcactcacgagtttgatcccatacttttttcttaaagagtggtcgttattatatctctgaaagcccgttttaaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92416" stop="93348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92716" g_stop="93062" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="348" polyA_stop="364"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E278445" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278445" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92716" e_stop="93062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAACCA</genome_strand>
        <mrna_strand>CAGTTCCATTTATTCAATATTAGAGTTATCATATTCGGTTTTACTGTCAGTTTCAGTTTTCGCTCCATTTTTTTATATATTTCTAGAGTATGTCCGTGTTTACCGTATATGCTGTCCCATGTAAGTATTTGTTTAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCCAGTTATTGTGGTTCCGATTATTTTAGACTATTATACCTCTTTGGGGACTGTAACATTAACGTTGTACTCACTCACGAGTTTGATCCCATACTTTTTTCTTAAAGAGTGGTCGTTATTATATCTCTGAAAGCCCGTTTTAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E394594" ref_strand="-" ref_description="SGN-E394594 [TUS-40-D22]">
      <seq>ttccatttattcaataatgaagttattatttttggttttactgtgagtttcagttttcgctttatttttttatttatttcttgaggaagtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggaaaaaaaggttttacgtcattttagtattataatatactatagagttattgtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92419" stop="93228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92719" g_stop="92928" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="211" polyA_stop="221"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E394594" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394594" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92719" e_stop="92928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTG</genome_strand>
        <mrna_strand>TTCCATTTATTCAATAATGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTTTATTTTTTTATTTATTTCTTGAGGAAGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGAAAAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATAGAGTTATTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E278480" ref_strand="-" ref_description="SGN-E278480 [cLEL-2-E2]">
      <seq>tttcgctcaattttttaattaatttcaagagaatgacggggtttgccgaaaatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttatacgtcattttagtattatcatatgcgatcgagttattgtggttacgattattttagatttttataccgttctggggactgtaacattaaagttgtactcactcacgagtttgatcaaaaacttttttcttaaagagtggtcgtgattataactctgaaagtttgttttaaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92473" stop="93363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92773" g_stop="93062" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="291" polyA_stop="307"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E278480" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278480" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92773" e_stop="93062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAACCA</genome_strand>
        <mrna_strand>TTTCGCTCAATTTTTTAATTAATTTCAAGAGAATGACGGGGTTTGCCGAAAATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTATACGTCATTTTAGTATTATCATATGCGATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCGTTCTGGGGACTGTAACATTAAAGTTGTACTCACTCACGAGTTTGATCAAAAACTTTTTTCTTAAAGAGTGGTCGTGATTATAACTCTGAAAGTTTGTTTTAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E278475" ref_strand="-" ref_description="SGN-E278475 [cLEL-2-C8]">
      <seq>gtatgtccgtgtttgccgcagatgttgtcccatggaagtatttgttgagattagcataggctgtgtcctttggcgtaaaagattttacgtcattttagtattatcatatactatcgagttattgtggttacgattattttagaattttataccgttctggggactgtaacattaaagttgaactcactcacgagtttgatcaaatacttttttcttaaagaggggtcgttattataactctgaaagtttgttttataccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92503" stop="93363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92803" g_stop="93062" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="261" polyA_stop="277"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E278475" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278475" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92803" e_stop="93062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAACCA</genome_strand>
        <mrna_strand>GTATGTCCGTGTTTGCCGCAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATAGGCTGTGTCCTTTGGCGTAAAAGATTTTACGTCATTTTAGTATTATCATATACTATCGAGTTATTGTGGTTACGATTATTTTAGAATTTTATACCGTTCTGGGGACTGTAACATTAAAGTTGAACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGGGGTCGTTATTATAACTCTGAAAGTTTGTTTTATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E278332" ref_strand="-" ref_description="SGN-E278332 [cLEL-2-E16]">
      <seq>ttgtcccatgtaagtatttgttacgattagcataggctgtgtcctttggcgtaaaaggttttacgtcattttagtattatcatatactatcgagttattgtggtaacgattattttagaatattataccgttctggggactgtaacattaaagttgtactcactcacgagtttgatcaaatacttttttcttaaagaggggtcgttattataactctgaaagtctgttttatacctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="92527" stop="93363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92827" g_stop="93062" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="237" polyA_stop="253"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E278332" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278332" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92827" e_stop="93062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAACCA</genome_strand>
        <mrna_strand>TTGTCCCATGTAAGTATTTGTTACGATTAGCATAGGCTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATCATATACTATCGAGTTATTGTGGTAACGATTATTTTAGAATATTATACCGTTCTGGGGACTGTAACATTAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGGGGTCGTTATTATAACTCTGAAAGTCTGTTTTATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E318519" ref_strand="+" ref_description="SGN-E318519 [cTOB-10-G22]">
      <seq>tgctcctcatatatagagagagaaagaagtgcgtgagtgtatgaattaatttttcttccatttattttatttttttggcagaatttgcatgacattctgttgaaaaaaggacctcaagctcacttttttgtgcttcttcttcttcttccgattctcgtcaggtaaagctcaagtaagagacaaattatagtagcattcaccatgtttcgtcgcaagaaccactctaatagtgaacaggggggtgaggaccagcagcacaaggttaaggagcttagggcttccctggggcaactctcaggccgcagtgcacagttctgcactgatgcatgtttaaaaaggtttttggaggcacggaattggaatgtagataaagcaaagaagatgttggaggagacgcttaaatggagattatcgtttaaacctgaagaaattcgctggaatgaagtagcgaaagaaggtgagactgggaaggtgtttaaagcaaatatttatgaccgccatggcaggacagtcctaatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="102866" stop="107217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103166" g_stop="103329" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103330" i_stop="105425" i_length="2096">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105426" g_stop="105525" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="261" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105526" i_stop="106038" i_length="513">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106039" g_stop="106215" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="438" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106216" i_stop="106833" i_length="618">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106834" g_stop="106917" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="522" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E318519" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103166" e_stop="103329"/>
          <exon e_start="105426" e_stop="105525"/>
          <exon e_start="106039" e_stop="106215"/>
          <exon e_start="106834" e_stop="106917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCCTCAGATATAGAGAGAGAAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAGAGGACCTCAAGCTCACTTTTTTGTGCTTCTTCTTCTTCTTCTTCCGTTTCTCGTCAGGTATGATCAGAGTCGGTTGCCGCCGACGTGGGTGGCGGAGGGGTTTACTTGCCTTTTTTTTTTTACTTTTGTTTATGAATTTGGGGTTTTGTTTGTTTTTTGCTCTGTTTATGTGTTTTTCTGTGAGTTTGGTTTGGTTTATTTGCTGCGAGTGGTGTAGGTTTGACATGTTTCTGATTTTACTTTTTTTGGTAGTTTTTGTAGTTTTTTAATTATTGTTTTAGCTATTATAGTGGAGTTGTTGGATCTGTTGATTGATTTTTCTATGGTATGGTGATTTTTTTTTTTAATTTTTATTGACTAATTTGTTTGTGTTAATCTAATGCTGAATATTAATAGTACTTGATTTCAGATTTTTGTCATAACTACTTTGACTTGCTGTAATTTGACTGAGTATTTATCGTAAACAAGCTCTCTACCTTCGCGCGTAGGCTGGAAGGAAGGGCTAAGGTCTAGGTACACCACTTTTGAAATGTCAATGGAGAATTTGTTGTTGTTGTTTTTGTTATGTTGAATTACTCTCGAATTAGGCTGAATAGCTGAAATGAACTTGGATAGAGCTGAATATATACAGATGATTCTGTAGTTGATTGAGTGGTAGCAGATTATTTTGTACAGGGTGTGTTAAATTGCGAAAAGATTGTTCTTATTCATGAATTATCTCTCTATTGTTGGTAGATCATGAGTCAAGCAGCAGGAGGCTACCCCTGCAAATGTTGTGTTTGGTGGTTTTTGTTGGTCTACCACATAACTTATACTTCTTCCTGACTTTGACCTTAGGATAGTTCTTTTTCTTTCTAAATGATGAATAGTGAAAATTTGTTTTGGGAAGGGTTATACTCAAAAGGATGAATTTTGCACTTGAACAAAAAAACAAAGCGTAGTAACTTATTTTTCTGCGATTTGCAGTTTATCTAGAAGCCATGTTTTGATTAGAGGATATCAAAGAAGTTTGCAATAGTGTTTGTTTATCAAAAAGAGTTGTGAGTTCCTTTGTATTTGAATTATTACTTGATAAAAATAGTTCCTTTTGTGCTTGAAAGCAAGTGAACACAAGGTGGTTCTACAACAACATAGGCTAGAAGTATGGAATGCATGACTCCTATTTACCCTACGTTAACTAATGAATGTGATATTCAAAGTTTCATTTTTTGTGTGTGATATACCTTGCCACCTCAAGTCTACTATGCCTTAAATTAGTAGAAGTCTTAAGCATGTTATTATTTGAGACCTTGTTGCATTCTTGGAAAACATGGCAAACTGCAAACTACAAGTTTTATAATGCAAGCTTGTGTTCTTGCAGTGAAATTGATCCCTTTCTGGTGGGGAGTCTTGGTGGTTGAATGCTATATGATATGTCAATTTTTTTAATAGATAATGTGAATATTTTGTGTTTGTGCTGCTCTGATTCTTACACTTTCACGAATTAGCTGGTAACTTCTGATAAAAAAGATCCCTAGTGAAAGATGCATAGAGTATTCTTCATTTACTTGTTAGGATCTCGTCCCAAATCTATTGCCAAGTTGTGTTCTAAATACAGACTACTACCTAATTGCCTATCATATCGTGAGAATCTGCACTTCACTTTTATACTTGCTGATGCATATGATTCTAGAAAGTGGACAACTTGATAAAATGATGTGTTTAGTGACAATACCTGATGGGGGTTTCTGAACCTGTAATTAATCAGTCGCCTTTAGCAATTTACTTTAGGCAAGTTTTCTACCTCTCAATTTCGTCATCCTATTTGACAAAACATATAAATGTTGATCAGGGAAGAATATTAGACTGCAACATTATCTTTCATTGATATCGATGGTAAATTGTTTCGTAATTGGGAAAAGCCTATCTGGGATTAGGCAATATGTTTGCCTTTTTGCCTTGTAGTGATTCTTTTAGAAGCAATAAACTGCATGTAGAGATTTTTGTCACAAATCGTAAGTGTTTTATTCAAATAAAAGGCTGGTTACAACATTCTTGCTTACCAAAGCCAATTCCCCTTGTTTGTTATTGTCTCTGAGAAAAACACCTGCATTGCTACATGGGTAAATTAACTATTAACAATCTGTTGCTTGTTTTATTAATCATTTTTTCAGGTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAGGTAACCAATAGTCCTGATGTTTATCTTTCTATGTTAATATCCTCTTGCTTTCAATTAGATTATAGATTGGATTTCTCATGTATTTATGATTCTATATTTTTAGGGATTTGTTTTCTTATCATTCTCTCTGTGGAAGAGGTGTTGGTGTTCTTTGCATGTGTAGTTCTTGCATATTAATACTTATCCTTACTATTTGGTATACCCTCTGTATACAACTGTTTTGGCCATGTTCTGTGCATGCATTGTCCTTGCATAGTAATACTTAACCTTAACTTTTTGGTATACCCTTTATATACAACTGTTTTGGCCATGTTTATGAATGAAAATATTTTACTTTATCAGAAAAACTTAATACTTATCCTACGAATGTTTCATGAAAGATGATTGAATCCTCTTGATGCTGCATGGCAAGGATGATAAGTATAGAGTGAATTTTTCAAGCATTGGTTTATGTTAGCTTGTTAGTATCCTGTATAAGCTCTTAGAGGTTGCGTGTCTTTTTTTTTTTTTAAGGTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGGGTAAGGAAACAATTTGCACTAATGTGGTTATCTCTTGTGCTTTGCACTAATGTGGTTATCTTTTGTTGATAACTTGTTTGTTTATCAGCTACATATCGAGAAAAAAAAAGCTTGTTAGTAGAGCTAGAATGAAAAATCTAGTTGGAAAATTATTATATTTTATATTAGTGGTGTCCGAACCAGCTTGCTCGCACCTCAACTAGTCTAGGGGGTGAACTATCCAGTCCATGAGCATAGTACGAAGGTCCTGCCATCAAGGTTACAGCTGGTGGGCGCGCACCTACTGTTGTAACTGGGATTCAAACATGGGATCTCTCCCTGCATTTTCCATGCCTCAACACTGGGCCACTTCCTTGAGGACATAAGAGGTCATACTAATAACCACAGATCACACTAATAACCATGACCAGTTATAACATTGAAATATAAGCAGTATGAGTCTTTTGCAATGTTGTGTGGATATTCTAACGTAGATACTGGAATTGTACTGACCACTCTACAATCAATTTGTCTTACCATTCTATGCTCTGCCAATTTCTCTGCAGATACAATTTTCTGTAAAATTTATATTAGTTTACAATTGCTTCTGCTGACCATGAAATGGTGTTGCATTGTTAGAATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTA</genome_strand>
        <mrna_strand>TGCTCCTCATATATAGAGAGAGAAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAAAGGACCTCAAGCTCACTTTTTTGTG---CTTCTTCTTCTTCTTCCGATTCTCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATATTTATGACCGCCATGGCAGGACAGTCCTAATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E201333" ref_strand="+" ref_description="SGN-E201333 [cLEC-4-C2]">
      <seq>tgctcctcagatatagagagagaaagaagtgcgtgagtgtatgaattaatttttcttccatttattttatttttttggcagaatttgcatgacattctgttgaaaaaaggacctcaagctcacttttttgtgcttcttcttcttcttccgtttctcgtcaggtaaagctcaagtaagagacaaattatagtatcattcaccatgtttcgtcgcaagaaccactctaatagtgaacaggggggtgaggaccagcaccacaaggttaaggagcttaaggcttccctggggcaactctcatgccgcagtgcacagttctgcactgatgcatgtttaaaaaggttgttggaggctctgtattggaatgtacatcaagcaaagaagatgttggaggagacgcttacatggagattatcgtttaaacctgaagaaattcgctggaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="102866" stop="106515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103166" g_stop="103329" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103330" i_stop="105425" i_length="2096">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105426" g_stop="105525" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="261" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105526" i_stop="106038" i_length="513">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106039" g_stop="106215" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="438" r_length="177" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E201333" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103166" e_stop="103329"/>
          <exon e_start="105426" e_stop="105525"/>
          <exon e_start="106039" e_stop="106215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCCTCAGATATAGAGAGAGAAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAGAGGACCTCAAGCTCACTTTTTTGTGCTTCTTCTTCTTCTTCTTCCGTTTCTCGTCAGGTATGATCAGAGTCGGTTGCCGCCGACGTGGGTGGCGGAGGGGTTTACTTGCCTTTTTTTTTTTACTTTTGTTTATGAATTTGGGGTTTTGTTTGTTTTTTGCTCTGTTTATGTGTTTTTCTGTGAGTTTGGTTTGGTTTATTTGCTGCGAGTGGTGTAGGTTTGACATGTTTCTGATTTTACTTTTTTTGGTAGTTTTTGTAGTTTTTTAATTATTGTTTTAGCTATTATAGTGGAGTTGTTGGATCTGTTGATTGATTTTTCTATGGTATGGTGATTTTTTTTTTTAATTTTTATTGACTAATTTGTTTGTGTTAATCTAATGCTGAATATTAATAGTACTTGATTTCAGATTTTTGTCATAACTACTTTGACTTGCTGTAATTTGACTGAGTATTTATCGTAAACAAGCTCTCTACCTTCGCGCGTAGGCTGGAAGGAAGGGCTAAGGTCTAGGTACACCACTTTTGAAATGTCAATGGAGAATTTGTTGTTGTTGTTTTTGTTATGTTGAATTACTCTCGAATTAGGCTGAATAGCTGAAATGAACTTGGATAGAGCTGAATATATACAGATGATTCTGTAGTTGATTGAGTGGTAGCAGATTATTTTGTACAGGGTGTGTTAAATTGCGAAAAGATTGTTCTTATTCATGAATTATCTCTCTATTGTTGGTAGATCATGAGTCAAGCAGCAGGAGGCTACCCCTGCAAATGTTGTGTTTGGTGGTTTTTGTTGGTCTACCACATAACTTATACTTCTTCCTGACTTTGACCTTAGGATAGTTCTTTTTCTTTCTAAATGATGAATAGTGAAAATTTGTTTTGGGAAGGGTTATACTCAAAAGGATGAATTTTGCACTTGAACAAAAAAACAAAGCGTAGTAACTTATTTTTCTGCGATTTGCAGTTTATCTAGAAGCCATGTTTTGATTAGAGGATATCAAAGAAGTTTGCAATAGTGTTTGTTTATCAAAAAGAGTTGTGAGTTCCTTTGTATTTGAATTATTACTTGATAAAAATAGTTCCTTTTGTGCTTGAAAGCAAGTGAACACAAGGTGGTTCTACAACAACATAGGCTAGAAGTATGGAATGCATGACTCCTATTTACCCTACGTTAACTAATGAATGTGATATTCAAAGTTTCATTTTTTGTGTGTGATATACCTTGCCACCTCAAGTCTACTATGCCTTAAATTAGTAGAAGTCTTAAGCATGTTATTATTTGAGACCTTGTTGCATTCTTGGAAAACATGGCAAACTGCAAACTACAAGTTTTATAATGCAAGCTTGTGTTCTTGCAGTGAAATTGATCCCTTTCTGGTGGGGAGTCTTGGTGGTTGAATGCTATATGATATGTCAATTTTTTTAATAGATAATGTGAATATTTTGTGTTTGTGCTGCTCTGATTCTTACACTTTCACGAATTAGCTGGTAACTTCTGATAAAAAAGATCCCTAGTGAAAGATGCATAGAGTATTCTTCATTTACTTGTTAGGATCTCGTCCCAAATCTATTGCCAAGTTGTGTTCTAAATACAGACTACTACCTAATTGCCTATCATATCGTGAGAATCTGCACTTCACTTTTATACTTGCTGATGCATATGATTCTAGAAAGTGGACAACTTGATAAAATGATGTGTTTAGTGACAATACCTGATGGGGGTTTCTGAACCTGTAATTAATCAGTCGCCTTTAGCAATTTACTTTAGGCAAGTTTTCTACCTCTCAATTTCGTCATCCTATTTGACAAAACATATAAATGTTGATCAGGGAAGAATATTAGACTGCAACATTATCTTTCATTGATATCGATGGTAAATTGTTTCGTAATTGGGAAAAGCCTATCTGGGATTAGGCAATATGTTTGCCTTTTTGCCTTGTAGTGATTCTTTTAGAAGCAATAAACTGCATGTAGAGATTTTTGTCACAAATCGTAAGTGTTTTATTCAAATAAAAGGCTGGTTACAACATTCTTGCTTACCAAAGCCAATTCCCCTTGTTTGTTATTGTCTCTGAGAAAAACACCTGCATTGCTACATGGGTAAATTAACTATTAACAATCTGTTGCTTGTTTTATTAATCATTTTTTCAGGTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAGGTAACCAATAGTCCTGATGTTTATCTTTCTATGTTAATATCCTCTTGCTTTCAATTAGATTATAGATTGGATTTCTCATGTATTTATGATTCTATATTTTTAGGGATTTGTTTTCTTATCATTCTCTCTGTGGAAGAGGTGTTGGTGTTCTTTGCATGTGTAGTTCTTGCATATTAATACTTATCCTTACTATTTGGTATACCCTCTGTATACAACTGTTTTGGCCATGTTCTGTGCATGCATTGTCCTTGCATAGTAATACTTAACCTTAACTTTTTGGTATACCCTTTATATACAACTGTTTTGGCCATGTTTATGAATGAAAATATTTTACTTTATCAGAAAAACTTAATACTTATCCTACGAATGTTTCATGAAAGATGATTGAATCCTCTTGATGCTGCATGGCAAGGATGATAAGTATAGAGTGAATTTTTCAAGCATTGGTTTATGTTAGCTTGTTAGTATCCTGTATAAGCTCTTAGAGGTTGCGTGTCTTTTTTTTTTTTTAAGGTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG</genome_strand>
        <mrna_strand>TGCTCCTCAGATATAGAGAGAGAAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAAAGGACCTCAAGCTCACTTTTTTGTG---CTTCTTCTTCTTCTTCCGTTTCTCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGCTCAAGTAAGAGACAAATTATAGTATCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCACCACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGAGCTTAAGGCTTCCCTGGGGCAACTCTCATGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTGTTGGAGGCTCTGTATTGGAATGTACATCAAGCAAAGAAGATGTTGGAGGAGACGCTTACATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E348580" ref_strand="+" ref_description="SGN-E348580 [cTOF-30-G17]">
      <seq>tcagatatagagagagaaagaagtgcgtgagtgtatgaattaatttttcttccatttattttatttttttggcagaatttgcatgacattctgttgaaaaaaggacctcaagctcacttttttgtgcttcttcttcttcttccgtttctcgtcaggtaaagctcaagtaagagacaaattatagtagcattcaccatgtttcgtcgcaagaaccactctaatagtgaacaggggggtgaggaccagcagcacaaggttaaggagcttagggcttccctggggcaactctcaggccgcagtgcacagttctgcactgatgcatgtttaaaaaggtttttggaggcacggaattggaatgtagataaagcaaagaagatgttggaggagacgcttaaatggagattatcgtttaaacctgaagaaattcgctggaatgaagtagcgaaagaaggtgagactgggaaggtgtttaaagcaaattttcatgaccgccatggcaggacagtcctaatattacggccaggaatgcagaacacggcagcactagacaaccagatgaangcatttggtgtatctaatcgagaatgccatttttaatctgccagaaggtcaagaacagatggccctggttaattgacttcactggatggtctataaccaataatgttcctgtaaaatctgctcgcgagaccatcaatattttgcaaaaccactaccctgagagactcgctgcagcacttctgtacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="102872" stop="107548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103172" g_stop="103329" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103330" i_stop="105425" i_length="2096">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105426" g_stop="105525" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="255" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105526" i_stop="106038" i_length="513">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106039" g_stop="106215" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="432" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106216" i_stop="106833" i_length="618">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106834" g_stop="106932" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="531" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106933" i_stop="107034" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107035" g_stop="107249" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="748" r_length="217" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E348580" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103172" e_stop="103329"/>
          <exon e_start="105426" e_stop="105525"/>
          <exon e_start="106039" e_stop="106215"/>
          <exon e_start="106834" e_stop="106932"/>
          <exon e_start="107035" e_stop="107249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATATAGAGAGAGAAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAGAGGACCTCAAGCTCACTTTTTTGTGCTTCTTCTTCTTCTTCTTCCGTTTCTCGTCAGGTATGATCAGAGTCGGTTGCCGCCGACGTGGGTGGCGGAGGGGTTTACTTGCCTTTTTTTTTTTACTTTTGTTTATGAATTTGGGGTTTTGTTTGTTTTTTGCTCTGTTTATGTGTTTTTCTGTGAGTTTGGTTTGGTTTATTTGCTGCGAGTGGTGTAGGTTTGACATGTTTCTGATTTTACTTTTTTTGGTAGTTTTTGTAGTTTTTTAATTATTGTTTTAGCTATTATAGTGGAGTTGTTGGATCTGTTGATTGATTTTTCTATGGTATGGTGATTTTTTTTTTTAATTTTTATTGACTAATTTGTTTGTGTTAATCTAATGCTGAATATTAATAGTACTTGATTTCAGATTTTTGTCATAACTACTTTGACTTGCTGTAATTTGACTGAGTATTTATCGTAAACAAGCTCTCTACCTTCGCGCGTAGGCTGGAAGGAAGGGCTAAGGTCTAGGTACACCACTTTTGAAATGTCAATGGAGAATTTGTTGTTGTTGTTTTTGTTATGTTGAATTACTCTCGAATTAGGCTGAATAGCTGAAATGAACTTGGATAGAGCTGAATATATACAGATGATTCTGTAGTTGATTGAGTGGTAGCAGATTATTTTGTACAGGGTGTGTTAAATTGCGAAAAGATTGTTCTTATTCATGAATTATCTCTCTATTGTTGGTAGATCATGAGTCAAGCAGCAGGAGGCTACCCCTGCAAATGTTGTGTTTGGTGGTTTTTGTTGGTCTACCACATAACTTATACTTCTTCCTGACTTTGACCTTAGGATAGTTCTTTTTCTTTCTAAATGATGAATAGTGAAAATTTGTTTTGGGAAGGGTTATACTCAAAAGGATGAATTTTGCACTTGAACAAAAAAACAAAGCGTAGTAACTTATTTTTCTGCGATTTGCAGTTTATCTAGAAGCCATGTTTTGATTAGAGGATATCAAAGAAGTTTGCAATAGTGTTTGTTTATCAAAAAGAGTTGTGAGTTCCTTTGTATTTGAATTATTACTTGATAAAAATAGTTCCTTTTGTGCTTGAAAGCAAGTGAACACAAGGTGGTTCTACAACAACATAGGCTAGAAGTATGGAATGCATGACTCCTATTTACCCTACGTTAACTAATGAATGTGATATTCAAAGTTTCATTTTTTGTGTGTGATATACCTTGCCACCTCAAGTCTACTATGCCTTAAATTAGTAGAAGTCTTAAGCATGTTATTATTTGAGACCTTGTTGCATTCTTGGAAAACATGGCAAACTGCAAACTACAAGTTTTATAATGCAAGCTTGTGTTCTTGCAGTGAAATTGATCCCTTTCTGGTGGGGAGTCTTGGTGGTTGAATGCTATATGATATGTCAATTTTTTTAATAGATAATGTGAATATTTTGTGTTTGTGCTGCTCTGATTCTTACACTTTCACGAATTAGCTGGTAACTTCTGATAAAAAAGATCCCTAGTGAAAGATGCATAGAGTATTCTTCATTTACTTGTTAGGATCTCGTCCCAAATCTATTGCCAAGTTGTGTTCTAAATACAGACTACTACCTAATTGCCTATCATATCGTGAGAATCTGCACTTCACTTTTATACTTGCTGATGCATATGATTCTAGAAAGTGGACAACTTGATAAAATGATGTGTTTAGTGACAATACCTGATGGGGGTTTCTGAACCTGTAATTAATCAGTCGCCTTTAGCAATTTACTTTAGGCAAGTTTTCTACCTCTCAATTTCGTCATCCTATTTGACAAAACATATAAATGTTGATCAGGGAAGAATATTAGACTGCAACATTATCTTTCATTGATATCGATGGTAAATTGTTTCGTAATTGGGAAAAGCCTATCTGGGATTAGGCAATATGTTTGCCTTTTTGCCTTGTAGTGATTCTTTTAGAAGCAATAAACTGCATGTAGAGATTTTTGTCACAAATCGTAAGTGTTTTATTCAAATAAAAGGCTGGTTACAACATTCTTGCTTACCAAAGCCAATTCCCCTTGTTTGTTATTGTCTCTGAGAAAAACACCTGCATTGCTACATGGGTAAATTAACTATTAACAATCTGTTGCTTGTTTTATTAATCATTTTTTCAGGTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAGGTAACCAATAGTCCTGATGTTTATCTTTCTATGTTAATATCCTCTTGCTTTCAATTAGATTATAGATTGGATTTCTCATGTATTTATGATTCTATATTTTTAGGGATTTGTTTTCTTATCATTCTCTCTGTGGAAGAGGTGTTGGTGTTCTTTGCATGTGTAGTTCTTGCATATTAATACTTATCCTTACTATTTGGTATACCCTCTGTATACAACTGTTTTGGCCATGTTCTGTGCATGCATTGTCCTTGCATAGTAATACTTAACCTTAACTTTTTGGTATACCCTTTATATACAACTGTTTTGGCCATGTTTATGAATGAAAATATTTTACTTTATCAGAAAAACTTAATACTTATCCTACGAATGTTTCATGAAAGATGATTGAATCCTCTTGATGCTGCATGGCAAGGATGATAAGTATAGAGTGAATTTTTCAAGCATTGGTTTATGTTAGCTTGTTAGTATCCTGTATAAGCTCTTAGAGGTTGCGTGTCTTTTTTTTTTTTTAAGGTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGGGTAAGGAAACAATTTGCACTAATGTGGTTATCTCTTGTGCTTTGCACTAATGTGGTTATCTTTTGTTGATAACTTGTTTGTTTATCAGCTACATATCGAGAAAAAAAAAGCTTGTTAGTAGAGCTAGAATGAAAAATCTAGTTGGAAAATTATTATATTTTATATTAGTGGTGTCCGAACCAGCTTGCTCGCACCTCAACTAGTCTAGGGGGTGAACTATCCAGTCCATGAGCATAGTACGAAGGTCCTGCCATCAAGGTTACAGCTGGTGGGCGCGCACCTACTGTTGTAACTGGGATTCAAACATGGGATCTCTCCCTGCATTTTCCATGCCTCAACACTGGGCCACTTCCTTGAGGACATAAGAGGTCATACTAATAACCACAGATCACACTAATAACCATGACCAGTTATAACATTGAAATATAAGCAGTATGAGTCTTTTGCAATGTTGTGTGGATATTCTAACGTAGATACTGGAATTGTACTGACCACTCTACAATCAATTTGTCTTACCATTCTATGCTCTGCCAATTTCTCTGCAGATACAATTTTCTGTAAAATTTATATTAGTTTACAATTGCTTCTGCTGACCATGAAATGGTGTTGCATTGTTAGAATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAGGTAATGTACAAGCAAGTTGATATCTTCATAAACTTTTCTTTTTATATTTCCAATTCCTATTCCATTTTGTGAAATTCTTAAAATTGTTGCTCATATTTGCAGAACACGGCAGCACTAGACAACCAGATGAA-GCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCCAGAAGGTCAAGAACAGATGG-CCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTACCCTGAGAGACTCGCTGCAGCACTTCTGTACAA</genome_strand>
        <mrna_strand>TCAGATATAGAGAGAGAAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAAAGGACCTCAAGCTCACTTTTTTGTG---CTTCTTCTTCTTCTTCCGTTTCTCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAG......................................................................................................AACACGGCAGCACTAGACAACCAGATGAANGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCCAGAAGGTCAAGAACAGATGGCCCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTACCCTGAGAGACTCGCTGCAGCACTTCTGTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E339488" ref_strand="+" ref_description="SGN-E339488 [cTOE-16-A11]">
      <seq>tcagatatagagagagaaagaagtgcgtgagtgtatgaattaatttttcttccatttattttatttttttggcagaatttgcatgacattctgttgaaaaaaggacctcaagctcacttttttgtgcttcttcttcttcttccgtttctcgtcaggtaaagctcaagtaagagacaaattatagtagcattcaccatgtttcgtcgcaagaaccactctaatagtgaacaggggggtgaggaccagcagcacaaggttaaggagcttagggcttccctggggcaactctcaggccgcagtgcacagttctgcactgatgcatgtttaaaaaggtttttggaggcacggaattggaatgtagataaagcaaagaagatgttggaggagacgcttaaatggagattatcgtttaaacctgaagaaattcgctggaatgaagtagcgaaagaaggtgagactgggaaggtgtttaaagcaaattttcatgaccgccatggcaggacagtcctaatattacggccaggaatgcagaacacggcagcactagacaaccagatgaagcatttggtgtatctaatcgagaatgccatttttaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="102872" stop="107402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103172" g_stop="103329" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103330" i_stop="105425" i_length="2096">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105426" g_stop="105525" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="255" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105526" i_stop="106038" i_length="513">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106039" g_stop="106215" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="432" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106216" i_stop="106833" i_length="618">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106834" g_stop="106932" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="531" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106933" i_stop="107034" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107035" g_stop="107102" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="599" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E339488" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103172" e_stop="103329"/>
          <exon e_start="105426" e_stop="105525"/>
          <exon e_start="106039" e_stop="106215"/>
          <exon e_start="106834" e_stop="106932"/>
          <exon e_start="107035" e_stop="107102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATATAGAGAGAGAAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAGAGGACCTCAAGCTCACTTTTTTGTGCTTCTTCTTCTTCTTCTTCCGTTTCTCGTCAGGTATGATCAGAGTCGGTTGCCGCCGACGTGGGTGGCGGAGGGGTTTACTTGCCTTTTTTTTTTTACTTTTGTTTATGAATTTGGGGTTTTGTTTGTTTTTTGCTCTGTTTATGTGTTTTTCTGTGAGTTTGGTTTGGTTTATTTGCTGCGAGTGGTGTAGGTTTGACATGTTTCTGATTTTACTTTTTTTGGTAGTTTTTGTAGTTTTTTAATTATTGTTTTAGCTATTATAGTGGAGTTGTTGGATCTGTTGATTGATTTTTCTATGGTATGGTGATTTTTTTTTTTAATTTTTATTGACTAATTTGTTTGTGTTAATCTAATGCTGAATATTAATAGTACTTGATTTCAGATTTTTGTCATAACTACTTTGACTTGCTGTAATTTGACTGAGTATTTATCGTAAACAAGCTCTCTACCTTCGCGCGTAGGCTGGAAGGAAGGGCTAAGGTCTAGGTACACCACTTTTGAAATGTCAATGGAGAATTTGTTGTTGTTGTTTTTGTTATGTTGAATTACTCTCGAATTAGGCTGAATAGCTGAAATGAACTTGGATAGAGCTGAATATATACAGATGATTCTGTAGTTGATTGAGTGGTAGCAGATTATTTTGTACAGGGTGTGTTAAATTGCGAAAAGATTGTTCTTATTCATGAATTATCTCTCTATTGTTGGTAGATCATGAGTCAAGCAGCAGGAGGCTACCCCTGCAAATGTTGTGTTTGGTGGTTTTTGTTGGTCTACCACATAACTTATACTTCTTCCTGACTTTGACCTTAGGATAGTTCTTTTTCTTTCTAAATGATGAATAGTGAAAATTTGTTTTGGGAAGGGTTATACTCAAAAGGATGAATTTTGCACTTGAACAAAAAAACAAAGCGTAGTAACTTATTTTTCTGCGATTTGCAGTTTATCTAGAAGCCATGTTTTGATTAGAGGATATCAAAGAAGTTTGCAATAGTGTTTGTTTATCAAAAAGAGTTGTGAGTTCCTTTGTATTTGAATTATTACTTGATAAAAATAGTTCCTTTTGTGCTTGAAAGCAAGTGAACACAAGGTGGTTCTACAACAACATAGGCTAGAAGTATGGAATGCATGACTCCTATTTACCCTACGTTAACTAATGAATGTGATATTCAAAGTTTCATTTTTTGTGTGTGATATACCTTGCCACCTCAAGTCTACTATGCCTTAAATTAGTAGAAGTCTTAAGCATGTTATTATTTGAGACCTTGTTGCATTCTTGGAAAACATGGCAAACTGCAAACTACAAGTTTTATAATGCAAGCTTGTGTTCTTGCAGTGAAATTGATCCCTTTCTGGTGGGGAGTCTTGGTGGTTGAATGCTATATGATATGTCAATTTTTTTAATAGATAATGTGAATATTTTGTGTTTGTGCTGCTCTGATTCTTACACTTTCACGAATTAGCTGGTAACTTCTGATAAAAAAGATCCCTAGTGAAAGATGCATAGAGTATTCTTCATTTACTTGTTAGGATCTCGTCCCAAATCTATTGCCAAGTTGTGTTCTAAATACAGACTACTACCTAATTGCCTATCATATCGTGAGAATCTGCACTTCACTTTTATACTTGCTGATGCATATGATTCTAGAAAGTGGACAACTTGATAAAATGATGTGTTTAGTGACAATACCTGATGGGGGTTTCTGAACCTGTAATTAATCAGTCGCCTTTAGCAATTTACTTTAGGCAAGTTTTCTACCTCTCAATTTCGTCATCCTATTTGACAAAACATATAAATGTTGATCAGGGAAGAATATTAGACTGCAACATTATCTTTCATTGATATCGATGGTAAATTGTTTCGTAATTGGGAAAAGCCTATCTGGGATTAGGCAATATGTTTGCCTTTTTGCCTTGTAGTGATTCTTTTAGAAGCAATAAACTGCATGTAGAGATTTTTGTCACAAATCGTAAGTGTTTTATTCAAATAAAAGGCTGGTTACAACATTCTTGCTTACCAAAGCCAATTCCCCTTGTTTGTTATTGTCTCTGAGAAAAACACCTGCATTGCTACATGGGTAAATTAACTATTAACAATCTGTTGCTTGTTTTATTAATCATTTTTTCAGGTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAGGTAACCAATAGTCCTGATGTTTATCTTTCTATGTTAATATCCTCTTGCTTTCAATTAGATTATAGATTGGATTTCTCATGTATTTATGATTCTATATTTTTAGGGATTTGTTTTCTTATCATTCTCTCTGTGGAAGAGGTGTTGGTGTTCTTTGCATGTGTAGTTCTTGCATATTAATACTTATCCTTACTATTTGGTATACCCTCTGTATACAACTGTTTTGGCCATGTTCTGTGCATGCATTGTCCTTGCATAGTAATACTTAACCTTAACTTTTTGGTATACCCTTTATATACAACTGTTTTGGCCATGTTTATGAATGAAAATATTTTACTTTATCAGAAAAACTTAATACTTATCCTACGAATGTTTCATGAAAGATGATTGAATCCTCTTGATGCTGCATGGCAAGGATGATAAGTATAGAGTGAATTTTTCAAGCATTGGTTTATGTTAGCTTGTTAGTATCCTGTATAAGCTCTTAGAGGTTGCGTGTCTTTTTTTTTTTTTAAGGTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGGGTAAGGAAACAATTTGCACTAATGTGGTTATCTCTTGTGCTTTGCACTAATGTGGTTATCTTTTGTTGATAACTTGTTTGTTTATCAGCTACATATCGAGAAAAAAAAAGCTTGTTAGTAGAGCTAGAATGAAAAATCTAGTTGGAAAATTATTATATTTTATATTAGTGGTGTCCGAACCAGCTTGCTCGCACCTCAACTAGTCTAGGGGGTGAACTATCCAGTCCATGAGCATAGTACGAAGGTCCTGCCATCAAGGTTACAGCTGGTGGGCGCGCACCTACTGTTGTAACTGGGATTCAAACATGGGATCTCTCCCTGCATTTTCCATGCCTCAACACTGGGCCACTTCCTTGAGGACATAAGAGGTCATACTAATAACCACAGATCACACTAATAACCATGACCAGTTATAACATTGAAATATAAGCAGTATGAGTCTTTTGCAATGTTGTGTGGATATTCTAACGTAGATACTGGAATTGTACTGACCACTCTACAATCAATTTGTCTTACCATTCTATGCTCTGCCAATTTCTCTGCAGATACAATTTTCTGTAAAATTTATATTAGTTTACAATTGCTTCTGCTGACCATGAAATGGTGTTGCATTGTTAGAATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAGGTAATGTACAAGCAAGTTGATATCTTCATAAACTTTTCTTTTTATATTTCCAATTCCTATTCCATTTTGTGAAATTCTTAAAATTGTTGCTCATATTTGCAGAACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCT</genome_strand>
        <mrna_strand>TCAGATATAGAGAGAGAAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAAAGGACCTCAAGCTCACTTTTTTGTG---CTTCTTCTTCTTCTTCCGTTTCTCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAG......................................................................................................AACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E703441" ref_strand="+" ref_description="SGN-E703441 [FA21CA09]">
      <seq>gagagagagagaaagaagtgagagaaagaagtgcgtgagtgtatgaattaatttttcttccatttattttatttttttggcagaatttgcatgacattctgttgaaaaaaggacctcaagctcacttttttgttcatcttcttcttcttccgtttctcgtcaggtaaagctcaagtaagagacaaattatagtagcattcaccatgtttcgtcgcaagaaccactctaatagtgaacaggggggtgaggaccagcagcacaaggttaaggagcttagggcttccctggggcaactctcagggcgcagtgcacagttctgcactgatgcatgtttaaaaaggtttttggaggcacggaattggaatgtagataaagcaaagaagatgttggaggagacgcttaaatggagattatcgtttaaacctgaagaaattcgctggaatgaagtagcgaaagaaggtgagactgggaaggtgtttaaagcaaattttcatgaccgccatggcaggacagtcctaatattacggccaggaatgcagaacacggcagcactagacaaccagatgaagcatttggtgtatctaatcgagaatgccatttttaatctgccagaaggtcaagaacagatggcctggttaattgacttcactggatggtctataaccaataatgttcctgtaaaatctgctcgcgagaccatcaatattttgcaaaaccactaccctgagagactcgctgcagcacttctgtacaatccaccgcgactttttgaaacattttggaggattgtcaaatactttatggatcccaaaacatttcaaaaggtcaagtttgtgtatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="102874" stop="107967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103176" g_stop="103329" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="163" r_length="150" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103330" i_stop="105425" i_length="2096">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105426" g_stop="105525" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="263" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105526" i_stop="106038" i_length="513">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106039" g_stop="106215" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="440" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106216" i_stop="106833" i_length="618">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106834" g_stop="106932" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="539" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106933" i_stop="107034" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107035" g_stop="107280" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="785" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107281" i_stop="107611" i_length="331">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107612" g_stop="107667" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="841" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E703441" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103176" e_stop="103329"/>
          <exon e_start="105426" e_stop="105525"/>
          <exon e_start="106039" e_stop="106215"/>
          <exon e_start="106834" e_stop="106932"/>
          <exon e_start="107035" e_stop="107280"/>
          <exon e_start="107612" e_stop="107667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAGAGAGAGAAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAGAGGACCTCAAGCTCACTTTTTTGTGCTTCTTCTTCTTCTTCTTCCGTTTCTCGTCAGGTATGATCAGAGTCGGTTGCCGCCGACGTGGGTGGCGGAGGGGTTTACTTGCCTTTTTTTTTTTACTTTTGTTTATGAATTTGGGGTTTTGTTTGTTTTTTGCTCTGTTTATGTGTTTTTCTGTGAGTTTGGTTTGGTTTATTTGCTGCGAGTGGTGTAGGTTTGACATGTTTCTGATTTTACTTTTTTTGGTAGTTTTTGTAGTTTTTTAATTATTGTTTTAGCTATTATAGTGGAGTTGTTGGATCTGTTGATTGATTTTTCTATGGTATGGTGATTTTTTTTTTTAATTTTTATTGACTAATTTGTTTGTGTTAATCTAATGCTGAATATTAATAGTACTTGATTTCAGATTTTTGTCATAACTACTTTGACTTGCTGTAATTTGACTGAGTATTTATCGTAAACAAGCTCTCTACCTTCGCGCGTAGGCTGGAAGGAAGGGCTAAGGTCTAGGTACACCACTTTTGAAATGTCAATGGAGAATTTGTTGTTGTTGTTTTTGTTATGTTGAATTACTCTCGAATTAGGCTGAATAGCTGAAATGAACTTGGATAGAGCTGAATATATACAGATGATTCTGTAGTTGATTGAGTGGTAGCAGATTATTTTGTACAGGGTGTGTTAAATTGCGAAAAGATTGTTCTTATTCATGAATTATCTCTCTATTGTTGGTAGATCATGAGTCAAGCAGCAGGAGGCTACCCCTGCAAATGTTGTGTTTGGTGGTTTTTGTTGGTCTACCACATAACTTATACTTCTTCCTGACTTTGACCTTAGGATAGTTCTTTTTCTTTCTAAATGATGAATAGTGAAAATTTGTTTTGGGAAGGGTTATACTCAAAAGGATGAATTTTGCACTTGAACAAAAAAACAAAGCGTAGTAACTTATTTTTCTGCGATTTGCAGTTTATCTAGAAGCCATGTTTTGATTAGAGGATATCAAAGAAGTTTGCAATAGTGTTTGTTTATCAAAAAGAGTTGTGAGTTCCTTTGTATTTGAATTATTACTTGATAAAAATAGTTCCTTTTGTGCTTGAAAGCAAGTGAACACAAGGTGGTTCTACAACAACATAGGCTAGAAGTATGGAATGCATGACTCCTATTTACCCTACGTTAACTAATGAATGTGATATTCAAAGTTTCATTTTTTGTGTGTGATATACCTTGCCACCTCAAGTCTACTATGCCTTAAATTAGTAGAAGTCTTAAGCATGTTATTATTTGAGACCTTGTTGCATTCTTGGAAAACATGGCAAACTGCAAACTACAAGTTTTATAATGCAAGCTTGTGTTCTTGCAGTGAAATTGATCCCTTTCTGGTGGGGAGTCTTGGTGGTTGAATGCTATATGATATGTCAATTTTTTTAATAGATAATGTGAATATTTTGTGTTTGTGCTGCTCTGATTCTTACACTTTCACGAATTAGCTGGTAACTTCTGATAAAAAAGATCCCTAGTGAAAGATGCATAGAGTATTCTTCATTTACTTGTTAGGATCTCGTCCCAAATCTATTGCCAAGTTGTGTTCTAAATACAGACTACTACCTAATTGCCTATCATATCGTGAGAATCTGCACTTCACTTTTATACTTGCTGATGCATATGATTCTAGAAAGTGGACAACTTGATAAAATGATGTGTTTAGTGACAATACCTGATGGGGGTTTCTGAACCTGTAATTAATCAGTCGCCTTTAGCAATTTACTTTAGGCAAGTTTTCTACCTCTCAATTTCGTCATCCTATTTGACAAAACATATAAATGTTGATCAGGGAAGAATATTAGACTGCAACATTATCTTTCATTGATATCGATGGTAAATTGTTTCGTAATTGGGAAAAGCCTATCTGGGATTAGGCAATATGTTTGCCTTTTTGCCTTGTAGTGATTCTTTTAGAAGCAATAAACTGCATGTAGAGATTTTTGTCACAAATCGTAAGTGTTTTATTCAAATAAAAGGCTGGTTACAACATTCTTGCTTACCAAAGCCAATTCCCCTTGTTTGTTATTGTCTCTGAGAAAAACACCTGCATTGCTACATGGGTAAATTAACTATTAACAATCTGTTGCTTGTTTTATTAATCATTTTTTCAGGTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAGGTAACCAATAGTCCTGATGTTTATCTTTCTATGTTAATATCCTCTTGCTTTCAATTAGATTATAGATTGGATTTCTCATGTATTTATGATTCTATATTTTTAGGGATTTGTTTTCTTATCATTCTCTCTGTGGAAGAGGTGTTGGTGTTCTTTGCATGTGTAGTTCTTGCATATTAATACTTATCCTTACTATTTGGTATACCCTCTGTATACAACTGTTTTGGCCATGTTCTGTGCATGCATTGTCCTTGCATAGTAATACTTAACCTTAACTTTTTGGTATACCCTTTATATACAACTGTTTTGGCCATGTTTATGAATGAAAATATTTTACTTTATCAGAAAAACTTAATACTTATCCTACGAATGTTTCATGAAAGATGATTGAATCCTCTTGATGCTGCATGGCAAGGATGATAAGTATAGAGTGAATTTTTCAAGCATTGGTTTATGTTAGCTTGTTAGTATCCTGTATAAGCTCTTAGAGGTTGCGTGTCTTTTTTTTTTTTTAAGGTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGGGTAAGGAAACAATTTGCACTAATGTGGTTATCTCTTGTGCTTTGCACTAATGTGGTTATCTTTTGTTGATAACTTGTTTGTTTATCAGCTACATATCGAGAAAAAAAAAGCTTGTTAGTAGAGCTAGAATGAAAAATCTAGTTGGAAAATTATTATATTTTATATTAGTGGTGTCCGAACCAGCTTGCTCGCACCTCAACTAGTCTAGGGGGTGAACTATCCAGTCCATGAGCATAGTACGAAGGTCCTGCCATCAAGGTTACAGCTGGTGGGCGCGCACCTACTGTTGTAACTGGGATTCAAACATGGGATCTCTCCCTGCATTTTCCATGCCTCAACACTGGGCCACTTCCTTGAGGACATAAGAGGTCATACTAATAACCACAGATCACACTAATAACCATGACCAGTTATAACATTGAAATATAAGCAGTATGAGTCTTTTGCAATGTTGTGTGGATATTCTAACGTAGATACTGGAATTGTACTGACCACTCTACAATCAATTTGTCTTACCATTCTATGCTCTGCCAATTTCTCTGCAGATACAATTTTCTGTAAAATTTATATTAGTTTACAATTGCTTCTGCTGACCATGAAATGGTGTTGCATTGTTAGAATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAGGTAATGTACAAGCAAGTTGATATCTTCATAAACTTTTCTTTTTATATTTCCAATTCCTATTCCATTTTGTGAAATTCTTAAAATTGTTGCTCATATTTGCAGAACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCCAGAAGGTCAAGAACAGATGGCCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTACCCTGAGAGACTCGCTGCAGCACTTCTGTACAATCCACCGCGACTTTTTGAAACATTTTGGAGGGTTTGTTTTTCATCCTCTTTGTTTTTCTTACCTCCTCCCTGCTATTTGAACAAACCTAGCTTGTAGTGTTGTAGTTGAGTAAAACAAAACGCGTACTTCCTTTCATAAGTAGATGTGACTTCCTAATGCATCGGCAAAACTTCCTCTCTAAGAATGGAGCTGTTAATTTTGGAAGCTTTGAGTGGGGGGGAGGGGGGGGGGGGATCAGGCATTCAAATTTTCTACCATTGCCATGTCACCCAAATTTCTTACCGAAATTATTATCTATTTATTCTTTATATTGTTCAATCATTATCCATCCCCTTAATGTTATCTTTTTTTACTTTTCCAGATTGTCAAATACTTTATGGATCCCAAAACATTTCAAAAGGTCAAGTTTGTGTATCC</genome_strand>
        <mrna_strand>AGA-AGTGAGAGAAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAAAGGACCTCAAGCTCAC-TTTTT-TG-TTCATCTTCTTCTTCTTCCGTTTCTCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGGCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAG......................................................................................................AACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCCAGAAGGTCAAGAACAGATGGCCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTACCCTGAGAGACTCGCTGCAGCACTTCTGTACAATCCACCGCGACTTTTTGAAACATTTTGGAGG...........................................................................................................................................................................................................................................................................................................................................ATTGTCAAATACTTTATGGATCCCAAAACATTTCAAAAGGTCAAGTTTGTGTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E281656" ref_strand="+" ref_description="SGN-E281656 [cLER-14-F21]">
      <seq>aaagaagtgcgtgagtgtatgaattaatttttcttccatttattttatttttttggcagaatttgcatgacattctgttgaaaagaggacctcaagctcacttttttgtgcttcttcttcttcttcttccgtttctcgtcaggtaaagctcaagtaagagacaaattatagtagcattcaccatgtttcgtcgcaagaaccactctaatagtgaacaggggggtgaggaccagcagcacaaggttaaggagcttagggcttccctggggcaactctcaggccgcagtgcacagttctgcactgatgcatgtttaaaaaggtttttggaggcacggaattggaatgtagataaagcaaagaagatgttggaggagacgcttaaatggagattatcgtttaaacctgaagaaattcgctggaatgaagtagcgaaagaaggtgagactgggaaggtgtttaaagcaaattttcatgaccgccatggcaggacagtcctaatattacggccaggaatgcagaacacggcagcactagacaaccagatgaagcatttggtgtatctaatcgagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="102888" stop="107389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103188" g_stop="103329" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103330" i_stop="105425" i_length="2096">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105426" g_stop="105525" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="242" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105526" i_stop="106038" i_length="513">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106039" g_stop="106215" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="419" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106216" i_stop="106833" i_length="618">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106834" g_stop="106932" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="518" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106933" i_stop="107034" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107035" g_stop="107089" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="573" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E281656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103188" e_stop="103329"/>
          <exon e_start="105426" e_stop="105525"/>
          <exon e_start="106039" e_stop="106215"/>
          <exon e_start="106834" e_stop="106932"/>
          <exon e_start="107035" e_stop="107089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAGAGGACCTCAAGCTCACTTTTTTGTGCTTCTTCTTCTTCTTCTTCCGTTTCTCGTCAGGTATGATCAGAGTCGGTTGCCGCCGACGTGGGTGGCGGAGGGGTTTACTTGCCTTTTTTTTTTTACTTTTGTTTATGAATTTGGGGTTTTGTTTGTTTTTTGCTCTGTTTATGTGTTTTTCTGTGAGTTTGGTTTGGTTTATTTGCTGCGAGTGGTGTAGGTTTGACATGTTTCTGATTTTACTTTTTTTGGTAGTTTTTGTAGTTTTTTAATTATTGTTTTAGCTATTATAGTGGAGTTGTTGGATCTGTTGATTGATTTTTCTATGGTATGGTGATTTTTTTTTTTAATTTTTATTGACTAATTTGTTTGTGTTAATCTAATGCTGAATATTAATAGTACTTGATTTCAGATTTTTGTCATAACTACTTTGACTTGCTGTAATTTGACTGAGTATTTATCGTAAACAAGCTCTCTACCTTCGCGCGTAGGCTGGAAGGAAGGGCTAAGGTCTAGGTACACCACTTTTGAAATGTCAATGGAGAATTTGTTGTTGTTGTTTTTGTTATGTTGAATTACTCTCGAATTAGGCTGAATAGCTGAAATGAACTTGGATAGAGCTGAATATATACAGATGATTCTGTAGTTGATTGAGTGGTAGCAGATTATTTTGTACAGGGTGTGTTAAATTGCGAAAAGATTGTTCTTATTCATGAATTATCTCTCTATTGTTGGTAGATCATGAGTCAAGCAGCAGGAGGCTACCCCTGCAAATGTTGTGTTTGGTGGTTTTTGTTGGTCTACCACATAACTTATACTTCTTCCTGACTTTGACCTTAGGATAGTTCTTTTTCTTTCTAAATGATGAATAGTGAAAATTTGTTTTGGGAAGGGTTATACTCAAAAGGATGAATTTTGCACTTGAACAAAAAAACAAAGCGTAGTAACTTATTTTTCTGCGATTTGCAGTTTATCTAGAAGCCATGTTTTGATTAGAGGATATCAAAGAAGTTTGCAATAGTGTTTGTTTATCAAAAAGAGTTGTGAGTTCCTTTGTATTTGAATTATTACTTGATAAAAATAGTTCCTTTTGTGCTTGAAAGCAAGTGAACACAAGGTGGTTCTACAACAACATAGGCTAGAAGTATGGAATGCATGACTCCTATTTACCCTACGTTAACTAATGAATGTGATATTCAAAGTTTCATTTTTTGTGTGTGATATACCTTGCCACCTCAAGTCTACTATGCCTTAAATTAGTAGAAGTCTTAAGCATGTTATTATTTGAGACCTTGTTGCATTCTTGGAAAACATGGCAAACTGCAAACTACAAGTTTTATAATGCAAGCTTGTGTTCTTGCAGTGAAATTGATCCCTTTCTGGTGGGGAGTCTTGGTGGTTGAATGCTATATGATATGTCAATTTTTTTAATAGATAATGTGAATATTTTGTGTTTGTGCTGCTCTGATTCTTACACTTTCACGAATTAGCTGGTAACTTCTGATAAAAAAGATCCCTAGTGAAAGATGCATAGAGTATTCTTCATTTACTTGTTAGGATCTCGTCCCAAATCTATTGCCAAGTTGTGTTCTAAATACAGACTACTACCTAATTGCCTATCATATCGTGAGAATCTGCACTTCACTTTTATACTTGCTGATGCATATGATTCTAGAAAGTGGACAACTTGATAAAATGATGTGTTTAGTGACAATACCTGATGGGGGTTTCTGAACCTGTAATTAATCAGTCGCCTTTAGCAATTTACTTTAGGCAAGTTTTCTACCTCTCAATTTCGTCATCCTATTTGACAAAACATATAAATGTTGATCAGGGAAGAATATTAGACTGCAACATTATCTTTCATTGATATCGATGGTAAATTGTTTCGTAATTGGGAAAAGCCTATCTGGGATTAGGCAATATGTTTGCCTTTTTGCCTTGTAGTGATTCTTTTAGAAGCAATAAACTGCATGTAGAGATTTTTGTCACAAATCGTAAGTGTTTTATTCAAATAAAAGGCTGGTTACAACATTCTTGCTTACCAAAGCCAATTCCCCTTGTTTGTTATTGTCTCTGAGAAAAACACCTGCATTGCTACATGGGTAAATTAACTATTAACAATCTGTTGCTTGTTTTATTAATCATTTTTTCAGGTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAGGTAACCAATAGTCCTGATGTTTATCTTTCTATGTTAATATCCTCTTGCTTTCAATTAGATTATAGATTGGATTTCTCATGTATTTATGATTCTATATTTTTAGGGATTTGTTTTCTTATCATTCTCTCTGTGGAAGAGGTGTTGGTGTTCTTTGCATGTGTAGTTCTTGCATATTAATACTTATCCTTACTATTTGGTATACCCTCTGTATACAACTGTTTTGGCCATGTTCTGTGCATGCATTGTCCTTGCATAGTAATACTTAACCTTAACTTTTTGGTATACCCTTTATATACAACTGTTTTGGCCATGTTTATGAATGAAAATATTTTACTTTATCAGAAAAACTTAATACTTATCCTACGAATGTTTCATGAAAGATGATTGAATCCTCTTGATGCTGCATGGCAAGGATGATAAGTATAGAGTGAATTTTTCAAGCATTGGTTTATGTTAGCTTGTTAGTATCCTGTATAAGCTCTTAGAGGTTGCGTGTCTTTTTTTTTTTTTAAGGTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGGGTAAGGAAACAATTTGCACTAATGTGGTTATCTCTTGTGCTTTGCACTAATGTGGTTATCTTTTGTTGATAACTTGTTTGTTTATCAGCTACATATCGAGAAAAAAAAAGCTTGTTAGTAGAGCTAGAATGAAAAATCTAGTTGGAAAATTATTATATTTTATATTAGTGGTGTCCGAACCAGCTTGCTCGCACCTCAACTAGTCTAGGGGGTGAACTATCCAGTCCATGAGCATAGTACGAAGGTCCTGCCATCAAGGTTACAGCTGGTGGGCGCGCACCTACTGTTGTAACTGGGATTCAAACATGGGATCTCTCCCTGCATTTTCCATGCCTCAACACTGGGCCACTTCCTTGAGGACATAAGAGGTCATACTAATAACCACAGATCACACTAATAACCATGACCAGTTATAACATTGAAATATAAGCAGTATGAGTCTTTTGCAATGTTGTGTGGATATTCTAACGTAGATACTGGAATTGTACTGACCACTCTACAATCAATTTGTCTTACCATTCTATGCTCTGCCAATTTCTCTGCAGATACAATTTTCTGTAAAATTTATATTAGTTTACAATTGCTTCTGCTGACCATGAAATGGTGTTGCATTGTTAGAATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAGGTAATGTACAAGCAAGTTGATATCTTCATAAACTTTTCTTTTTATATTTCCAATTCCTATTCCATTTTGTGAAATTCTTAAAATTGTTGCTCATATTTGCAGAACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATG</genome_strand>
        <mrna_strand>AAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAGAGGACCTCAAGCTCACTTTTTTGTGCTTCTTCTTCTTCTTCTTCCGTTTCTCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAG......................................................................................................AACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E249613" ref_strand="+" ref_description="SGN-E249613 [cLEF-56-I2]">
      <seq>gtatgaattaatttttcttccatttattttatttttttggcagaatttgcatgacattctgttgaaaaaaggacctcaagctcacttttttgtgcttcttcttcttcttccgtttctcgtcaggtaaagctcaagtaagagacaaattatagtagcattcaccatgtttcgtcgcaagaaccactctaatagtgaacaggggggtgaggaccagcagcacaaggttaaggagcttagggcttccctggggcaactctcaggccgcagtgcacagttctgcactgatgcatgtttaaaaaggtttttggaggcacggaattggaatgtagataaagcaaagaagatgttggaggagacgcttaaatggagattatcgtttaaacctgaagaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="102904" stop="106510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103204" g_stop="103329" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103330" i_stop="105425" i_length="2096">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105426" g_stop="105525" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="223" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105526" i_stop="106038" i_length="513">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106039" g_stop="106210" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="395" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E249613" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103204" e_stop="103329"/>
          <exon e_start="105426" e_stop="105525"/>
          <exon e_start="106039" e_stop="106210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAGAGGACCTCAAGCTCACTTTTTTGTGCTTCTTCTTCTTCTTCTTCCGTTTCTCGTCAGGTATGATCAGAGTCGGTTGCCGCCGACGTGGGTGGCGGAGGGGTTTACTTGCCTTTTTTTTTTTACTTTTGTTTATGAATTTGGGGTTTTGTTTGTTTTTTGCTCTGTTTATGTGTTTTTCTGTGAGTTTGGTTTGGTTTATTTGCTGCGAGTGGTGTAGGTTTGACATGTTTCTGATTTTACTTTTTTTGGTAGTTTTTGTAGTTTTTTAATTATTGTTTTAGCTATTATAGTGGAGTTGTTGGATCTGTTGATTGATTTTTCTATGGTATGGTGATTTTTTTTTTTAATTTTTATTGACTAATTTGTTTGTGTTAATCTAATGCTGAATATTAATAGTACTTGATTTCAGATTTTTGTCATAACTACTTTGACTTGCTGTAATTTGACTGAGTATTTATCGTAAACAAGCTCTCTACCTTCGCGCGTAGGCTGGAAGGAAGGGCTAAGGTCTAGGTACACCACTTTTGAAATGTCAATGGAGAATTTGTTGTTGTTGTTTTTGTTATGTTGAATTACTCTCGAATTAGGCTGAATAGCTGAAATGAACTTGGATAGAGCTGAATATATACAGATGATTCTGTAGTTGATTGAGTGGTAGCAGATTATTTTGTACAGGGTGTGTTAAATTGCGAAAAGATTGTTCTTATTCATGAATTATCTCTCTATTGTTGGTAGATCATGAGTCAAGCAGCAGGAGGCTACCCCTGCAAATGTTGTGTTTGGTGGTTTTTGTTGGTCTACCACATAACTTATACTTCTTCCTGACTTTGACCTTAGGATAGTTCTTTTTCTTTCTAAATGATGAATAGTGAAAATTTGTTTTGGGAAGGGTTATACTCAAAAGGATGAATTTTGCACTTGAACAAAAAAACAAAGCGTAGTAACTTATTTTTCTGCGATTTGCAGTTTATCTAGAAGCCATGTTTTGATTAGAGGATATCAAAGAAGTTTGCAATAGTGTTTGTTTATCAAAAAGAGTTGTGAGTTCCTTTGTATTTGAATTATTACTTGATAAAAATAGTTCCTTTTGTGCTTGAAAGCAAGTGAACACAAGGTGGTTCTACAACAACATAGGCTAGAAGTATGGAATGCATGACTCCTATTTACCCTACGTTAACTAATGAATGTGATATTCAAAGTTTCATTTTTTGTGTGTGATATACCTTGCCACCTCAAGTCTACTATGCCTTAAATTAGTAGAAGTCTTAAGCATGTTATTATTTGAGACCTTGTTGCATTCTTGGAAAACATGGCAAACTGCAAACTACAAGTTTTATAATGCAAGCTTGTGTTCTTGCAGTGAAATTGATCCCTTTCTGGTGGGGAGTCTTGGTGGTTGAATGCTATATGATATGTCAATTTTTTTAATAGATAATGTGAATATTTTGTGTTTGTGCTGCTCTGATTCTTACACTTTCACGAATTAGCTGGTAACTTCTGATAAAAAAGATCCCTAGTGAAAGATGCATAGAGTATTCTTCATTTACTTGTTAGGATCTCGTCCCAAATCTATTGCCAAGTTGTGTTCTAAATACAGACTACTACCTAATTGCCTATCATATCGTGAGAATCTGCACTTCACTTTTATACTTGCTGATGCATATGATTCTAGAAAGTGGACAACTTGATAAAATGATGTGTTTAGTGACAATACCTGATGGGGGTTTCTGAACCTGTAATTAATCAGTCGCCTTTAGCAATTTACTTTAGGCAAGTTTTCTACCTCTCAATTTCGTCATCCTATTTGACAAAACATATAAATGTTGATCAGGGAAGAATATTAGACTGCAACATTATCTTTCATTGATATCGATGGTAAATTGTTTCGTAATTGGGAAAAGCCTATCTGGGATTAGGCAATATGTTTGCCTTTTTGCCTTGTAGTGATTCTTTTAGAAGCAATAAACTGCATGTAGAGATTTTTGTCACAAATCGTAAGTGTTTTATTCAAATAAAAGGCTGGTTACAACATTCTTGCTTACCAAAGCCAATTCCCCTTGTTTGTTATTGTCTCTGAGAAAAACACCTGCATTGCTACATGGGTAAATTAACTATTAACAATCTGTTGCTTGTTTTATTAATCATTTTTTCAGGTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAGGTAACCAATAGTCCTGATGTTTATCTTTCTATGTTAATATCCTCTTGCTTTCAATTAGATTATAGATTGGATTTCTCATGTATTTATGATTCTATATTTTTAGGGATTTGTTTTCTTATCATTCTCTCTGTGGAAGAGGTGTTGGTGTTCTTTGCATGTGTAGTTCTTGCATATTAATACTTATCCTTACTATTTGGTATACCCTCTGTATACAACTGTTTTGGCCATGTTCTGTGCATGCATTGTCCTTGCATAGTAATACTTAACCTTAACTTTTTGGTATACCCTTTATATACAACTGTTTTGGCCATGTTTATGAATGAAAATATTTTACTTTATCAGAAAAACTTAATACTTATCCTACGAATGTTTCATGAAAGATGATTGAATCCTCTTGATGCTGCATGGCAAGGATGATAAGTATAGAGTGAATTTTTCAAGCATTGGTTTATGTTAGCTTGTTAGTATCCTGTATAAGCTCTTAGAGGTTGCGTGTCTTTTTTTTTTTTTAAGGTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTC</genome_strand>
        <mrna_strand>GTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAAAGGACCTCAAGCTCACTTTTTTGTG---CTTCTTCTTCTTCTTCCGTTTCTCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E546526" ref_strand="+" ref_description="SGN-E546526 [TUS-69-O24]">
      <seq>gttaattgtttcgtaattgggaaaagcctatctgggattaggcaatatgtttgcctttttgccttgtagtgattcttttagaagcaataaactgcgtgtagagatttttgtcacaaatcataagtcttttattcaaataaaaggctggttacaacattcttgcttaccaaagccaattccccttgtttgttattgtctgtgaaaaaaacatctgcattgctacatggtaaattaactattaacaatctgttgcttgttttattaatcattttttcaggtaaagctcaagtaagagacaaattatagtagcattcaccatgtttcgtcgcaagaaccactctaatagtgaacagggggttgaggaccagcagcacaaggttaaggagcttagggcttccctggggcaactctcagggcgcagtgcacagttctgcactgatgcatgtttaaaaaggtttttggaggcacggaattggaatgtagataaagcaaagaagatgttggaggagacgcttaaatggagattatcgtttaaacctgaagaaattcgctggaatgaagtagcgaaagaaggtgagactgggaaggtgtttaaagcaaattttcatgaccgccatggcaggacagtcctaatattacggccaggaatgcagaacacggcagcactagacaaccagatgaagcatttggtgtatctaatcgagaatgccatttttaatctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="104848" stop="107405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105148" g_stop="105525" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105526" i_stop="106038" i_length="513">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106039" g_stop="106215" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="554" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106216" i_stop="106833" i_length="618">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106834" g_stop="106932" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="653" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106933" i_stop="107034" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107035" g_stop="107105" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="724" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E546526" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105148" e_stop="105525"/>
          <exon e_start="106039" e_stop="106215"/>
          <exon e_start="106834" e_stop="106932"/>
          <exon e_start="107035" e_stop="107105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATTGTTTCGTAATTGGGAAAAGCCTATCTGGGATTAGGCAATATGTTTGCCTTTTTGCCTTGTAGTGATTCTTTTAGAAGCAATAAACTGCATGTAGAGATTTTTGTCACAAATCGTAAGTGTTTTATTCAAATAAAAGGCTGGTTACAACATTCTTGCTTACCAAAGCCAATTCCCCTTGTTTGTTATTGTCTCTGAGAAAAACACCTGCATTGCTACATGGGTAAATTAACTATTAACAATCTGTTGCTTGTTTTATTAATCATTTTTTCAGGTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAGGTAACCAATAGTCCTGATGTTTATCTTTCTATGTTAATATCCTCTTGCTTTCAATTAGATTATAGATTGGATTTCTCATGTATTTATGATTCTATATTTTTAGGGATTTGTTTTCTTATCATTCTCTCTGTGGAAGAGGTGTTGGTGTTCTTTGCATGTGTAGTTCTTGCATATTAATACTTATCCTTACTATTTGGTATACCCTCTGTATACAACTGTTTTGGCCATGTTCTGTGCATGCATTGTCCTTGCATAGTAATACTTAACCTTAACTTTTTGGTATACCCTTTATATACAACTGTTTTGGCCATGTTTATGAATGAAAATATTTTACTTTATCAGAAAAACTTAATACTTATCCTACGAATGTTTCATGAAAGATGATTGAATCCTCTTGATGCTGCATGGCAAGGATGATAAGTATAGAGTGAATTTTTCAAGCATTGGTTTATGTTAGCTTGTTAGTATCCTGTATAAGCTCTTAGAGGTTGCGTGTCTTTTTTTTTTTTTAAGGTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGGGTAAGGAAACAATTTGCACTAATGTGGTTATCTCTTGTGCTTTGCACTAATGTGGTTATCTTTTGTTGATAACTTGTTTGTTTATCAGCTACATATCGAGAAAAAAAAAGCTTGTTAGTAGAGCTAGAATGAAAAATCTAGTTGGAAAATTATTATATTTTATATTAGTGGTGTCCGAACCAGCTTGCTCGCACCTCAACTAGTCTAGGGGGTGAACTATCCAGTCCATGAGCATAGTACGAAGGTCCTGCCATCAAGGTTACAGCTGGTGGGCGCGCACCTACTGTTGTAACTGGGATTCAAACATGGGATCTCTCCCTGCATTTTCCATGCCTCAACACTGGGCCACTTCCTTGAGGACATAAGAGGTCATACTAATAACCACAGATCACACTAATAACCATGACCAGTTATAACATTGAAATATAAGCAGTATGAGTCTTTTGCAATGTTGTGTGGATATTCTAACGTAGATACTGGAATTGTACTGACCACTCTACAATCAATTTGTCTTACCATTCTATGCTCTGCCAATTTCTCTGCAGATACAATTTTCTGTAAAATTTATATTAGTTTACAATTGCTTCTGCTGACCATGAAATGGTGTTGCATTGTTAGAATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAGGTAATGTACAAGCAAGTTGATATCTTCATAAACTTTTCTTTTTATATTTCCAATTCCTATTCCATTTTGTGAAATTCTTAAAATTGTTGCTCATATTTGCAGAACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCC</genome_strand>
        <mrna_strand>GTTAATTGTTTCGTAATTGGGAAAAGCCTATCTGGGATTAGGCAATATGTTTGCCTTTTTGCCTTGTAGTGATTCTTTTAGAAGCAATAAACTGCGTGTAGAGATTTTTGTCACAAATCATAAGTCTTTTATTCAAATAAAAGGCTGGTTACAACATTCTTGCTTACCAAAGCCAATTCCCCTTGTTTGTTATTGTCTGTGAAAAAAACATCTGCATTGCTACAT-GGTAAATTAACTATTAACAATCTGTTGCTTGTTTTATTAATCATTTTTTCAGGTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGTTGAGGACCAGCAGCACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGGCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAG......................................................................................................AACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E276540" ref_strand="+" ref_description="SGN-E276540 [cLEN-17-E18]">
      <seq>accactctaatagtgaacaggggggtgaggaccagcagcacaaggttaaggagcttagggcttccctggggcaactctcaggccgcagtgcacagttctgcactgatgcatgtttaaaaaggtttttggaggcacggaattggaatgtagataaagcaaagaagatgttggaggagacgcttaaatggagattatcgtttaaacctgaagaaattcgctggaatgaagtagcgaaagaaggtgagactgggaaggtgtttaaagcaaattttcatgaccgccatggcaggacagtcctaatattacggccaggaatgcagaacacggcagcactagacaaccagatgaagcatttggtgtatctaatcgagaatgccatttttaatctgccagaaggtcaagaacagatggcctggttaattgacttcactggatggtctataaccaataatgttcctgtaaaatctgctcgcgagaccatcaatattttgcaaaaccactaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="105182" stop="107521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105482" g_stop="105525" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105526" i_stop="106038" i_length="513">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106039" g_stop="106215" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="221" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106216" i_stop="106833" i_length="618">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106834" g_stop="106932" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="320" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106933" i_stop="107034" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107035" g_stop="107221" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="507" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E276540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105482" e_stop="105525"/>
          <exon e_start="106039" e_stop="106215"/>
          <exon e_start="106834" e_stop="106932"/>
          <exon e_start="107035" e_stop="107221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAGGTAACCAATAGTCCTGATGTTTATCTTTCTATGTTAATATCCTCTTGCTTTCAATTAGATTATAGATTGGATTTCTCATGTATTTATGATTCTATATTTTTAGGGATTTGTTTTCTTATCATTCTCTCTGTGGAAGAGGTGTTGGTGTTCTTTGCATGTGTAGTTCTTGCATATTAATACTTATCCTTACTATTTGGTATACCCTCTGTATACAACTGTTTTGGCCATGTTCTGTGCATGCATTGTCCTTGCATAGTAATACTTAACCTTAACTTTTTGGTATACCCTTTATATACAACTGTTTTGGCCATGTTTATGAATGAAAATATTTTACTTTATCAGAAAAACTTAATACTTATCCTACGAATGTTTCATGAAAGATGATTGAATCCTCTTGATGCTGCATGGCAAGGATGATAAGTATAGAGTGAATTTTTCAAGCATTGGTTTATGTTAGCTTGTTAGTATCCTGTATAAGCTCTTAGAGGTTGCGTGTCTTTTTTTTTTTTTAAGGTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGGGTAAGGAAACAATTTGCACTAATGTGGTTATCTCTTGTGCTTTGCACTAATGTGGTTATCTTTTGTTGATAACTTGTTTGTTTATCAGCTACATATCGAGAAAAAAAAAGCTTGTTAGTAGAGCTAGAATGAAAAATCTAGTTGGAAAATTATTATATTTTATATTAGTGGTGTCCGAACCAGCTTGCTCGCACCTCAACTAGTCTAGGGGGTGAACTATCCAGTCCATGAGCATAGTACGAAGGTCCTGCCATCAAGGTTACAGCTGGTGGGCGCGCACCTACTGTTGTAACTGGGATTCAAACATGGGATCTCTCCCTGCATTTTCCATGCCTCAACACTGGGCCACTTCCTTGAGGACATAAGAGGTCATACTAATAACCACAGATCACACTAATAACCATGACCAGTTATAACATTGAAATATAAGCAGTATGAGTCTTTTGCAATGTTGTGTGGATATTCTAACGTAGATACTGGAATTGTACTGACCACTCTACAATCAATTTGTCTTACCATTCTATGCTCTGCCAATTTCTCTGCAGATACAATTTTCTGTAAAATTTATATTAGTTTACAATTGCTTCTGCTGACCATGAAATGGTGTTGCATTGTTAGAATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAGGTAATGTACAAGCAAGTTGATATCTTCATAAACTTTTCTTTTTATATTTCCAATTCCTATTCCATTTTGTGAAATTCTTAAAATTGTTGCTCATATTTGCAGAACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCCAGAAGGTCAAGAACAGATGGCCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTACCCTG</genome_strand>
        <mrna_strand>ACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAG......................................................................................................AACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCCAGAAGGTCAAGAACAGATGGCCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTACCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E235401" ref_strand="+" ref_description="SGN-E235401 [cLED-11-F18]">
      <seq>tggggcaactctcaggccgcagtgcacagttctgcactgatgcatgtttaaaaaggtttttggaggcacggaattggaatgtagataaagcaaagaagatgttggaggagacgcttaaatggagattatcgtttaaacctgaagaaattcgctggaatgaagtagcgaaagaaggtgagactgggaaggtgtttaaagcaaattttcatgaccgccatggcaggacagtcctaatattacggccaggaatgcagaacacggcagcactagacaaccagatgaagcatttggtgtatctaatcgagaatgccatttttaatctgccagaaggtcaagaacagatggcctggttaattgacttcactggatggtctataaccaataatgttcctgtaaaatctgctcgcgagaccatcaatattttgcaaaaccactaccctgagagactcgctgcagcacttctgtacaatccaccgcgactttttgaaacattttggaggattgtcaaatactttatggatcccaaaacatttcaaaaggtcaagtttgtgtatccaaagaataaggatagcgcggaactgatgaagtcgtacttcgacgttgacaatcttcctactgagtttggaggaacagctacactgaaatatgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="105761" stop="108063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106061" g_stop="106215" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106216" i_stop="106833" i_length="618">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106834" g_stop="106932" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="254" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106933" i_stop="107034" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107035" g_stop="107280" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="500" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107281" i_stop="107611" i_length="331">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107612" g_stop="107763" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="652" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E235401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106061" e_stop="106215"/>
          <exon e_start="106834" e_stop="106932"/>
          <exon e_start="107035" e_stop="107280"/>
          <exon e_start="107612" e_stop="107763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGGGTAAGGAAACAATTTGCACTAATGTGGTTATCTCTTGTGCTTTGCACTAATGTGGTTATCTTTTGTTGATAACTTGTTTGTTTATCAGCTACATATCGAGAAAAAAAAAGCTTGTTAGTAGAGCTAGAATGAAAAATCTAGTTGGAAAATTATTATATTTTATATTAGTGGTGTCCGAACCAGCTTGCTCGCACCTCAACTAGTCTAGGGGGTGAACTATCCAGTCCATGAGCATAGTACGAAGGTCCTGCCATCAAGGTTACAGCTGGTGGGCGCGCACCTACTGTTGTAACTGGGATTCAAACATGGGATCTCTCCCTGCATTTTCCATGCCTCAACACTGGGCCACTTCCTTGAGGACATAAGAGGTCATACTAATAACCACAGATCACACTAATAACCATGACCAGTTATAACATTGAAATATAAGCAGTATGAGTCTTTTGCAATGTTGTGTGGATATTCTAACGTAGATACTGGAATTGTACTGACCACTCTACAATCAATTTGTCTTACCATTCTATGCTCTGCCAATTTCTCTGCAGATACAATTTTCTGTAAAATTTATATTAGTTTACAATTGCTTCTGCTGACCATGAAATGGTGTTGCATTGTTAGAATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAGGTAATGTACAAGCAAGTTGATATCTTCATAAACTTTTCTTTTTATATTTCCAATTCCTATTCCATTTTGTGAAATTCTTAAAATTGTTGCTCATATTTGCAGAACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCCAGAAGGTCAAGAACAGATGGCCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTACCCTGAGAGACTCGCTGCAGCACTTCTGTACAATCCACCGCGACTTTTTGAAACATTTTGGAGGGTTTGTTTTTCATCCTCTTTGTTTTTCTTACCTCCTCCCTGCTATTTGAACAAACCTAGCTTGTAGTGTTGTAGTTGAGTAAAACAAAACGCGTACTTCCTTTCATAAGTAGATGTGACTTCCTAATGCATCGGCAAAACTTCCTCTCTAAGAATGGAGCTGTTAATTTTGGAAGCTTTGAGTGGGGGGGAGGGGGGGGGGGGATCAGGCATTCAAATTTTCTACCATTGCCATGTCACCCAAATTTCTTACCGAAATTATTATCTATTTATTCTTTATATTGTTCAATCATTATCCATCCCCTTAATGTTATCTTTTTTTACTTTTCCAGATTGTCAAATACTTTATGGATCCCAAAACATTTCAAAAGGTCAAGTTTGTGTATCCAAAGAATAAGGATAGCGCGGAACTGATGAAGTCGTACTTCGACGTTGACAATCTTCCTACTGAGTTTGGAGGAACAGCTACACTGAAATATGATCA</genome_strand>
        <mrna_strand>TGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAG......................................................................................................AACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCCAGAAGGTCAAGAACAGATGGCCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTACCCTGAGAGACTCGCTGCAGCACTTCTGTACAATCCACCGCGACTTTTTGAAACATTTTGGAGG...........................................................................................................................................................................................................................................................................................................................................ATTGTCAAATACTTTATGGATCCCAAAACATTTCAAAAGGTCAAGTTTGTGTATCCAAAGAATAAGGATAGCGCGGAACTGATGAAGTCGTACTTCGACGTTGACAATCTTCCTACTGAGTTTGGAGGAACAGCTACACTGAAATATGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E236607" ref_strand="+" ref_description="SGN-E236607 [cLED-13-L15]">
      <seq>tggggcaactctcatgccgcagtgcacagttctgcactgatgcatgtttaaaaaggtttttggaggcacggaattggaatgtagataaagcaaagaagatgttggaggagacgcttaaatggagattatcgtttaaacctgaagaaattcgctggaatgaagtagcgaaagaaggtgagactgggaaggtgtttaaagcaaattttcatgaccgccatggcaggacagtcctaatattacggccaggaatgcagaacacggcagcactagacaaccagatgaagcatttggtgtatctaatcgagaatgccatttttaatctgccagaaggtcaagaacagatggcctggttaattgacttcactggatggtctataaccaataatgttcctgtaaaatctgctcgcgagaccatcaatattttgcaaaaccactaccctgagagactcgctgcagcacttctgtacaatccaccgcgactttttgaaacattttggaggattgtcaaatactttatggatcccaaaacatttcaaaaggtcaagtttgtgtatccaaagaataaggatagcgcggaactgatgaagtcgtacttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="105761" stop="108008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106061" g_stop="106215" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106216" i_stop="106833" i_length="618">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106834" g_stop="106932" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="254" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106933" i_stop="107034" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107035" g_stop="107280" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="500" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107281" i_stop="107611" i_length="331">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107612" g_stop="107708" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="597" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E236607" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106061" e_stop="106215"/>
          <exon e_start="106834" e_stop="106932"/>
          <exon e_start="107035" e_stop="107280"/>
          <exon e_start="107612" e_stop="107708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGGGTAAGGAAACAATTTGCACTAATGTGGTTATCTCTTGTGCTTTGCACTAATGTGGTTATCTTTTGTTGATAACTTGTTTGTTTATCAGCTACATATCGAGAAAAAAAAAGCTTGTTAGTAGAGCTAGAATGAAAAATCTAGTTGGAAAATTATTATATTTTATATTAGTGGTGTCCGAACCAGCTTGCTCGCACCTCAACTAGTCTAGGGGGTGAACTATCCAGTCCATGAGCATAGTACGAAGGTCCTGCCATCAAGGTTACAGCTGGTGGGCGCGCACCTACTGTTGTAACTGGGATTCAAACATGGGATCTCTCCCTGCATTTTCCATGCCTCAACACTGGGCCACTTCCTTGAGGACATAAGAGGTCATACTAATAACCACAGATCACACTAATAACCATGACCAGTTATAACATTGAAATATAAGCAGTATGAGTCTTTTGCAATGTTGTGTGGATATTCTAACGTAGATACTGGAATTGTACTGACCACTCTACAATCAATTTGTCTTACCATTCTATGCTCTGCCAATTTCTCTGCAGATACAATTTTCTGTAAAATTTATATTAGTTTACAATTGCTTCTGCTGACCATGAAATGGTGTTGCATTGTTAGAATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAGGTAATGTACAAGCAAGTTGATATCTTCATAAACTTTTCTTTTTATATTTCCAATTCCTATTCCATTTTGTGAAATTCTTAAAATTGTTGCTCATATTTGCAGAACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCCAGAAGGTCAAGAACAGATGGCCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTACCCTGAGAGACTCGCTGCAGCACTTCTGTACAATCCACCGCGACTTTTTGAAACATTTTGGAGGGTTTGTTTTTCATCCTCTTTGTTTTTCTTACCTCCTCCCTGCTATTTGAACAAACCTAGCTTGTAGTGTTGTAGTTGAGTAAAACAAAACGCGTACTTCCTTTCATAAGTAGATGTGACTTCCTAATGCATCGGCAAAACTTCCTCTCTAAGAATGGAGCTGTTAATTTTGGAAGCTTTGAGTGGGGGGGAGGGGGGGGGGGGATCAGGCATTCAAATTTTCTACCATTGCCATGTCACCCAAATTTCTTACCGAAATTATTATCTATTTATTCTTTATATTGTTCAATCATTATCCATCCCCTTAATGTTATCTTTTTTTACTTTTCCAGATTGTCAAATACTTTATGGATCCCAAAACATTTCAAAAGGTCAAGTTTGTGTATCCAAAGAATAAGGATAGCGCGGAACTGATGAAGTCGTACTTCG</genome_strand>
        <mrna_strand>TGGGGCAACTCTCATGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAG......................................................................................................AACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCCAGAAGGTCAAGAACAGATGGCCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTACCCTGAGAGACTCGCTGCAGCACTTCTGTACAATCCACCGCGACTTTTTGAAACATTTTGGAGG...........................................................................................................................................................................................................................................................................................................................................ATTGTCAAATACTTTATGGATCCCAAAACATTTCAAAAGGTCAAGTTTGTGTATCCAAAGAATAAGGATAGCGCGGAACTGATGAAGTCGTACTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E546525" ref_strand="-" ref_description="SGN-E546525 [TUS-69-O24]">
      <seq>ttttaatctcccagaaggtcaagaacagatggcctggttaattgacttcactggatggtctataaccaataatgttcctgtaaaatctgctcgcgagaccatcaatattttgcaaaaccactcccctgagagactcgctgcagcacttttgtacaatccaccacgactttttgaaacattttggaggattgtgaaatactttatggatcccaaaacatttcaaaaggtcaagtttgtgtatccaaagaataaggatagcgcggaactgatgaagtcatatttcgacgtggacaatcttcctactgagtttggaggaacagctacactgaaatatgatcccgaggagttctcaaggcaaatggctcaagatgatgtgaaggccgccaagttttggggttcggacaaacatccccctggtcctgggggtaatgttaattactctgcagtagaagttgctccagacccttaatcacttactctataagccactacctgagcttaaatgattgcaacactgacaaagctcagttttttatatgcctaactaagttcaaataaataatgaggaatgtaagatcatgttcacagacattagcttatttcagatgaactttaattgtaggttgtactttgatttatgcagaaatcaaaaagcgctaaatatttaagcctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="106794" stop="108399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107094" g_stop="107280" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107281" i_stop="107611" i_length="331">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107612" g_stop="108099" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="674" r_length="487" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="714"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E546525" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546525" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107094" e_stop="107280"/>
          <exon e_start="107612" e_stop="108099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATCTGCCAGAAGGTCAAGAACAGATGGCCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTACCCTGAGAGACTCGCTGCAGCACTTCTGTACAATCCACCGCGACTTTTTGAAACATTTTGGAGGGTTTGTTTTTCATCCTCTTTGTTTTTCTTACCTCCTCCCTGCTATTTGAACAAACCTAGCTTGTAGTGTTGTAGTTGAGTAAAACAAAACGCGTACTTCCTTTCATAAGTAGATGTGACTTCCTAATGCATCGGCAAAACTTCCTCTCTAAGAATGGAGCTGTTAATTTTGGAAGCTTTGAGTGGGGGGGAGGGGGGGGGGGGATCAGGCATTCAAATTTTCTACCATTGCCATGTCACCCAAATTTCTTACCGAAATTATTATCTATTTATTCTTTATATTGTTCAATCATTATCCATCCCCTTAATGTTATCTTTTTTTACTTTTCCAGATTGTCAAATACTTTATGGATCCCAAAACATTTCAAAAGGTCAAGTTTGTGTATCCAAAGAATAAGGATAGCGCGGAACTGATGAAGTCGTACTTCGACGTTGACAATCTTCCTACTGAGTTTGGAGGAACAGCTACACTGAAATATGATCACGAGGAGTTCTCAAGGCAAATGGCTCAAGATGATGTGAAGGCCGCCAAGTTTTGGGGTTCGGACAAACATCCCCCTGGTCCTGGTGGTAATGGTAATTACTCTGCAGTAGAAGTTGCTCCAGAACCTTAATCACTTACTCTATAAGCCACTGCCTGAGCTTAAATGATTGCAACACTGACAAAGCTCAGTCTCTTATATGCCTAACTAAGTTCAAATAAATAATGAGGAATGTAAGAATCATGTTCACAGACATTAGCTTATTTCAGATGAACTTTAATTGTAGGTTGAACTTTGATTTATGCAGAAATCAAAAAGCACTAAATATTTAAGCCTCA</genome_strand>
        <mrna_strand>TTTTAATCTCCCAGAAGGTCAAGAACAGATGGCCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTCCCCTGAGAGACTCGCTGCAGCACTTTTGTACAATCCACCACGACTTTTTGAAACATTTTGGAGG...........................................................................................................................................................................................................................................................................................................................................ATTGTGAAATACTTTATGGATCCCAAAACATTTCAAAAGGTCAAGTTTGTGTATCCAAAGAATAAGGATAGCGCGGAACTGATGAAGTCATATTTCGACGTGGACAATCTTCCTACTGAGTTTGGAGGAACAGCTACACTGAAATATGATCCCGAGGAGTTCTCAAGGCAAATGGCTCAAGATGATGTGAAGGCCGCCAAGTTTTGGGGTTCGGACAAACATCCCCCTGGTCCTGGGGGTAATGTTAATTACTCTGCAGTAGAAGTTGCTCCAGACCCTTAATCACTTACTCTATAAGCCACTACCTGAGCTTAAATGATTGCAACACTGACAAAGCTCAGTTTTTTATATGCCTAACTAAGTTCAAATAAATAATGAGGAATGTAAG-ATCATGTTCACAGACATTAGCTTATTTCAGATGAACTTTAATTGTAGGTTGTACTTTGATTTATGCAGAAATCAAAAAGCGCTAAATATTTAAGCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E311395" ref_strand="+" ref_description="SGN-E311395 [cLEZ-18-L4]">
      <seq>caccgcgactttttgaaacattttggaggattgtcaaatactttatggatcccaaaacatttcaaaaggtcaagtttgtgtatccaaagaataaggatagcgcggaactgatgaagtcgtacttcgacgttgacaatcttcctactgagtttggaggaacagctacactgaaatatgatcacgaggagttctcaaggcaaatggctcaagatgatgtgaaggccgccaagttttggggttcggacaaacatccccctggtcctggtggtaatggtaattactctgcagtagaagttgctccagaaccttaatcacttactctataagccactgcctgagcttaaatgattgcaacactgacaaagctcagtctcttatatgcctaactaagttcaaataaataatgaggaatgtaagaatcatgttcacagacattagcttatttcagatgaactttaattgtaggttgaactgtgatttatgcagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="106952" stop="108378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107252" g_stop="107280" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107281" i_stop="107611" i_length="331">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107612" g_stop="108081" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="499" r_length="470" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E311395" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107252" e_stop="107280"/>
          <exon e_start="107612" e_stop="108081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGCGACTTTTTGAAACATTTTGGAGGGTTTGTTTTTCATCCTCTTTGTTTTTCTTACCTCCTCCCTGCTATTTGAACAAACCTAGCTTGTAGTGTTGTAGTTGAGTAAAACAAAACGCGTACTTCCTTTCATAAGTAGATGTGACTTCCTAATGCATCGGCAAAACTTCCTCTCTAAGAATGGAGCTGTTAATTTTGGAAGCTTTGAGTGGGGGGGAGGGGGGGGGGGGATCAGGCATTCAAATTTTCTACCATTGCCATGTCACCCAAATTTCTTACCGAAATTATTATCTATTTATTCTTTATATTGTTCAATCATTATCCATCCCCTTAATGTTATCTTTTTTTACTTTTCCAGATTGTCAAATACTTTATGGATCCCAAAACATTTCAAAAGGTCAAGTTTGTGTATCCAAAGAATAAGGATAGCGCGGAACTGATGAAGTCGTACTTCGACGTTGACAATCTTCCTACTGAGTTTGGAGGAACAGCTACACTGAAATATGATCACGAGGAGTTCTCAAGGCAAATGGCTCAAGATGATGTGAAGGCCGCCAAGTTTTGGGGTTCGGACAAACATCCCCCTGGTCCTGGTGGTAATGGTAATTACTCTGCAGTAGAAGTTGCTCCAGAACCTTAATCACTTACTCTATAAGCCACTGCCTGAGCTTAAATGATTGCAACACTGACAAAGCTCAGTCTCTTATATGCCTAACTAAGTTCAAATAAATAATGAGGAATGTAAGAATCATGTTCACAGACATTAGCTTATTTCAGATGAACTTTAATTGTAGGTTGAACTTTGATTTATGCAGAAATCAAAAAGCA</genome_strand>
        <mrna_strand>CACCGCGACTTTTTGAAACATTTTGGAGG...........................................................................................................................................................................................................................................................................................................................................ATTGTCAAATACTTTATGGATCCCAAAACATTTCAAAAGGTCAAGTTTGTGTATCCAAAGAATAAGGATAGCGCGGAACTGATGAAGTCGTACTTCGACGTTGACAATCTTCCTACTGAGTTTGGAGGAACAGCTACACTGAAATATGATCACGAGGAGTTCTCAAGGCAAATGGCTCAAGATGATGTGAAGGCCGCCAAGTTTTGGGGTTCGGACAAACATCCCCCTGGTCCTGGTGGTAATGGTAATTACTCTGCAGTAGAAGTTGCTCCAGAACCTTAATCACTTACTCTATAAGCCACTGCCTGAGCTTAAATGATTGCAACACTGACAAAGCTCAGTCTCTTATATGCCTAACTAAGTTCAAATAAATAATGAGGAATGTAAGAATCATGTTCACAGACATTAGCTTATTTCAGATGAACTTTAATTGTAGGTTGAACTGTGATTTATGCAGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E733892" ref_strand="+" ref_description="SGN-E733892 [LB11AH09]">
      <seq>cgttatggtaaaagatgttcagtgtactcagaaggagcctcttgctttcttcgaagggaccgtgttgataagaaagctgaagaagctacatttgtgagcacagatagtataagattgactgggagtgtgaactttgaggtttcatataaagatgatctttttctctctgggactttggagatggccaacatcaatgattctcaaaactgtcttaggagatggagcatgaactgtgaatcagttatgagtgctggcacgggatttctgaaaggaaaacatattgtgggttctgaatcattgtcaccgacaattgaagtgtatgttactggttgcttctctgggacacctatcatcttaactaagactttgcagctaaatcacaggaagaagcaccatagaaagggtatgttggactccattccggagcatgacacatctgaacagcataaagaagtctcatctgaacatgatctgcaggtaacagaatacaacggaaactacaaaccagaaagcgaagaagactacaacaacatgtactggggacgaacagaacttatggatggtgaagacggagaaatgtcctggttcaatgctggggttcgagttggtgttgggattggccttggcatttgtgtaggagttggagtaggagttggtttattagtccgtactacacgaaacttaagaaggcgccttatgtaattacatagcatacatataaaaggctaacaatacagagatgctgtttttaagaatatattgtaatttttcgacgttgctaaccattttctttttcatgtgtaatctgtttgctgcatttttgtggtgagttgctaaaactgtatggacatgtttttaggtaatattgtatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="111770" stop="108043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111471" g_stop="110994" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110993" i_stop="108738" i_length="2256">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108737" g_stop="108343" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="873" r_length="396" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E733892" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111471" e_stop="110994"/>
          <exon e_start="108737" e_stop="108343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAATGGTATAAGATGTTCAGTGCACTCGGAAGGAGCCTCTTGCTTTCTTCGAAGGGACCGTGTTGATAAGAAAGCTGAAGAAGCTACATTTGTGAGCACAGATAGTATAAGATTGACTGGGAGTGTGAACTTTGAGGTTTCATATAAAGATGATCTTTTTCTCTCTGGGACTTTGGAGATGGCCAACATCAATGATTCTCAAAACTGTCTTAGGAGATGGAGCATGAACTGTGAATCAGTTATGAGTGCTGGCACGGGATTTCTGAAAGGAAAACATATTGTGGGTTCTGAATCATTGTCACCGACAATTGAAGTCTATGTTACCGGTTGCTTCTCTGGGACACCTATCATCTTAACTAAGACTTTGCAGCTAAATCACAGGAAGAAGCACCATAGAAAGGGTATGTTAGACTCCATTCCGGAGCATGACACTTCTGAACAGCATAAAGAAGTCTCATCTGAACATGATCTGCAGGTATTATTTGTTCCTCAGACCTTTTTCCTTACGTAATCGAAATCTTAAACATGCAAAATGGTTGACATGGCATATGCCTACAGCCTAACTCTTTACATAGTTAACCAATAGGTGGAATGAGATAATCGACATCATTGCCTTCAGTTTATTCAGTGTCTTTCTGATATTTTTCGAGAGACCTAAAAATGTTTTGGGATCCGTCTTCCTCTTTGATTCAAACTGAATTTGAACTTATTTTAAGTGGTGGAAACAAGCTGAAAAAGTTAAACAGTGTGAAAAGAGACTTTTAAAAAGACTGGGATATGTCGTCTTTGAAAGTTTCCAAATGGTTAGGGTCTATGTTGCTCGAATTCTTCAAAAATGTCTCTAGGTGCGTGTCCCTTCAAAAGTAGTGTATTTTTGGAGGATCTGACACAGGGCGGCAACATTTTTGGAGATTCCGAACAACTTAGGTTAGGGCTGCACAAACGATCAGCCTAAAATGACTAGAACATTTCTACAAATTCTTCTTTTTCAAATGATAACTGTGGTACACTATATACAATTTCACTTGTTGAATTGTATTTAAATTTTTTTATACGTTTAAGCCCCAAAATGTTTACGTCTCTTTTCCTTGTTGGTGATCTATCAAGAAGTAATGCATGATATCCTATACACAGCTCTTTCCTCAGAATTGTTATTATTGATTGCACAGGCACCTTCAATATATGTCTTCTAACCAAAGATAACTACATTAATGGTATTCCATTGACAGAATGGGGTCAGTAAAAGCATGGCCCTGACAACTCGTCACAGTTTACTCTACCCTTGTATCTAGCTTCATAATGTTTCATGCCATGAAACATGTTTATTTAATTTTGTCGCGATCTACGAAAAGTTCGCATCTTTAAGGAGAATCACCTGACACTGGAAATAGAATCTTATATTAAAAATGTCAGAGGGTATGGGCAGCTCATACTTTTAACTAATTGTTTAATTATATTATTGCATTGTCCCTATCCTTCTAGTTTTTCTTTACTGATAAAACAAAATTGTCCCTATCCTTCTAGAAATTGGCGTGCATTGGAGGTTATCATCAGGATGGCAACTAGATGGGCTGCCATCTTTTTCTCATTTTCATTCCATTTCAGCTCATTGAGAGTACTTGACCATTCTGATGTCTTCTTTGAGCTAATTAGAATAGACTCTTCCGTTATAGTCTCCATAAATTAGATAGATTTTCTGAAGGTGGTCTGAATGCATATTATCTTGAAGCAAAATGTCAGATGGAATACAACAATTATACCTACGATTCAGTCCCAAATAAGTCAACGTCAGCTATATGAATCCTCAATCTTTTATTTGAGCTCATTTCATATAATCATCATATTAAATAAAATAAAAGTGAGAAATATGTTCAATAAATATTGATTTATAATGTTAATGATAATTAATATTAGAAGTTCTCTAACGAGTCTAAAACATATCCTCTACTAGTAGTTATCACCTGTCTGGATCTTTACTTTCATCGTAGCCTATCTTTTGTTAATTTTGCGTTGCTGCCTAGCATTTGTAGCTCTTTTGGGAAAGCTTCCTCCCGATTGTCATTCAGTTGGACAATATTGAAGTGTCAGCTGCAAAAATCTAAGGCCGTCCATCTATCATCCCCTGTATGAATATTCTTGTCTAGATAATATAGTGGGAATTCGTCACGTGCTATCCATCTTTCATGATTAACTTTAGAAATGCTATGATATATGAATTCTGCTTCTGATGATAACACTTAGCTCCTTGCTCTGATGTTGTGTGATTGAATAGTGCCATCCAGTTTTGTTCTTACATTTTTTTGCACTCCATATGGCAACCTTAGTGACATTTGTTTCTTTTGGGATATCGAATCCATTACGTGACGAACATTAGCTTGTTATACGTCAACGTTGTTCCAAACTCAAGTTGACTTTTCTTGAAAGTAAATCCAAAGTTTGAAAGTTTCAGCTCATGTGTAAGTATTGCCTATGTGCTGCTTTAATTTTTGAAGTTGACAAAAATTAGTTGCATTTCATCTACAGTTTCTGATTGTTAAGTTTTCTGTGTCGTTTCGATTGAAAAATATTATCATGGCAGTGGTTGGTTTTAGTAATTCTTTAGTACTTGTTTATTTTGAACCACAAAGTAGAGTTCCACAGGTGCAATTAATTAGATGAATCCCACAGCTTCTCAGATGTGTAATTACATGATGGAAACTGCACAGGTTCTGAAGTTCATTGTGTTTCACAGGTAACAGAATACAACGGAAACTACAAACCAGAAAGCGAAGAAGACTACAACAACATGTACTGGGGACGAACAGAACTTATGGATGGTGAAGACGGAGAAATGTCCTGGTTCAATGCTGGGGTTCGAGTTGGTGTTGGGATTGGCCTTGGCATTTGTGTAGGAGTTGGAGTAGGAGTTGGTTTATTAGTCCGTACTACACGCAACTTAAGAAGGCGCCTTATGTAATTACATAGCATACGTAT-AAAGGCTAACAATACAGAGATACTGTTTTTAAGAATATATTGTAATTTTTCGACGTTGCTAACCATTTTCTTTTTCATGTGTAATCTGTTTGCTGCATTTTTGTGGTGAGTTGCTAAAGCTGTATGGACATGTTTTTAGGTAATATTGTATCA</genome_strand>
        <mrna_strand>CGTT-ATGGTAAAAGATGTTCAGTGTACTCAGAAGGAGCCTCTTGCTTTCTTCGAAGGGACCGTGTTGATAAGAAAGCTGAAGAAGCTACATTTGTGAGCACAGATAGTATAAGATTGACTGGGAGTGTGAACTTTGAGGTTTCATATAAAGATGATCTTTTTCTCTCTGGGACTTTGGAGATGGCCAACATCAATGATTCTCAAAACTGTCTTAGGAGATGGAGCATGAACTGTGAATCAGTTATGAGTGCTGGCACGGGATTTCTGAAAGGAAAACATATTGTGGGTTCTGAATCATTGTCACCGACAATTGAAGTGTATGTTACTGGTTGCTTCTCTGGGACACCTATCATCTTAACTAAGACTTTGCAGCTAAATCACAGGAAGAAGCACCATAGAAAGGGTATGTTGGACTCCATTCCGGAGCATGACACATCTGAACAGCATAAAGAAGTCTCATCTGAACATGATCTGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGAATACAACGGAAACTACAAACCAGAAAGCGAAGAAGACTACAACAACATGTACTGGGGACGAACAGAACTTATGGATGGTGAAGACGGAGAAATGTCCTGGTTCAATGCTGGGGTTCGAGTTGGTGTTGGGATTGGCCTTGGCATTTGTGTAGGAGTTGGAGTAGGAGTTGGTTTATTAGTCCGTACTACACGAAACTTAAGAAGGCGCCTTATGTAATTACATAGCATACATATAAAAGGCTAACAATACAGAGATGCTGTTTTTAAGAATATATTGTAATTTTTCGACGTTGCTAACCATTTTCTTTTTCATGTGTAATCTGTTTGCTGCATTTTTGTGGTGAGTTGCTAAAACTGTATGGACATGTTTTTAGGTAATATTGTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E342895" ref_strand="+" ref_description="SGN-E342895 [cTOF-11-I19]">
      <seq>tcacgtgctatccatctttcatgattaactttagaaatgctatgatatatgaattctgcttcttatgataacacttagctccttgctctgatgttgtgtgattgaatagtgccatccagttttgttcttacatttttttgcactccatatggcaaccttagtgacatttgtttcttttgggatatcgaatccattacgtgacgcatattagcttgttatacgtcaacgttgttccaaactcaagttgacttttcttgaaagtaaatccaaagtttgaaattttcagctcatgtgtaagtattgcctatgtgctgctttaattttgaagttgacaaaaattagttgcatttcatctacagtttctgattgttaagttttctgtgtcgtttcgattgaaaaatattatcatggcagtggttggttttagtaattctttagtacttgtttattttgaaccacaaagtagagttccacaggtgcaattaattagatgaatcccacagcttctcagatgtgtaattacatgatggaaactgcacaggttctgaagttcattgtgtttcacaggtaacagaatacaaaggaaactacaaaccagaaagcgaagaagactacaacaacatgtactggggacgaacagaacttatggatggtgaagacggagaaatgtcctggttcaatgctgggttcgagtttgtgttgggattggccttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="109605" stop="108288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109305" g_stop="108588" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E342895" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109305" e_stop="108588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGTGCTATCCATCTTTCATGATTAACTTTAGAAATGCTATGATATATGAATTCTGCTTCTGATGATAACACTTAGCTCCTTGCTCTGATGTTGTGTGATTGAATAGTGCCATCCAGTTTTGTTCTTACATTTTTTTGCACTCCATATGGCAACCTTAGTGACATTTGTTTCTTTTGGGATATCGAATCCATTACGTGACGAACATTAGCTTGTTATACGTCAACGTTGTTCCAAACTCAAGTTGACTTTTCTTGAAAGTAAATCCAAAGTTTGAAAGTTTCAGCTCATGTGTAAGTATTGCCTATGTGCTGCTTTAATTTTTGAAGTTGACAAAAATTAGTTGCATTTCATCTACAGTTTCTGATTGTTAAGTTTTCTGTGTCGTTTCGATTGAAAAATATTATCATGGCAGTGGTTGGTTTTAGTAATTCTTTAGTACTTGTTTATTTTGAACCACAAAGTAGAGTTCCACAGGTGCAATTAATTAGATGAATCCCACAGCTTCTCAGATGTGTAATTACATGATGGAAACTGCACAGGTTCTGAAGTTCATTGTGTTTCACAGGTAACAGAATACAACGGAAACTACAAACCAGAAAGCGAAGAAGACTACAACAACATGTACTGGGGACGAACAGAACTTATGGATGGTGAAGACGGAGAAATGTCCTGGTTCAATGCTGGGGTTCGAGTTGGTGTTGGGATTGGCCTTGGC</genome_strand>
        <mrna_strand>TCACGTGCTATCCATCTTTCATGATTAACTTTAGAAATGCTATGATATATGAATTCTGCTTCTTATGATAACACTTAGCTCCTTGCTCTGATGTTGTGTGATTGAATAGTGCCATCCAGTTTTGTTCTTACATTTTTTTGCACTCCATATGGCAACCTTAGTGACATTTGTTTCTTTTGGGATATCGAATCCATTACGTGACGCATATTAGCTTGTTATACGTCAACGTTGTTCCAAACTCAAGTTGACTTTTCTTGAAAGTAAATCCAAAGTTTGAAATTTTCAGCTCATGTGTAAGTATTGCCTATGTGCTGCTTTAA-TTTTGAAGTTGACAAAAATTAGTTGCATTTCATCTACAGTTTCTGATTGTTAAGTTTTCTGTGTCGTTTCGATTGAAAAATATTATCATGGCAGTGGTTGGTTTTAGTAATTCTTTAGTACTTGTTTATTTTGAACCACAAAGTAGAGTTCCACAGGTGCAATTAATTAGATGAATCCCACAGCTTCTCAGATGTGTAATTACATGATGGAAACTGCACAGGTTCTGAAGTTCATTGTGTTTCACAGGTAACAGAATACAAAGGAAACTACAAACCAGAAAGCGAAGAAGACTACAACAACATGTACTGGGGACGAACAGAACTTATGGATGGTGAAGACGGAGAAATGTCCTGGTTCAATGCT-GGGTTCGAGTTTGTGTTGGGATTGGCCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E324932" ref_strand="+" ref_description="SGN-E324932 [cTOC-11-G8]">
      <seq>gagggttttgtatgtaaagatgaaaggttttgcttagcaccaaaagagctaaacacatgagttatttcttatgaaaaaaaaaatattattagctctaccatctcataaaatggattgtcacaaagattgatgggaaagaagaaagttgtgaagaaaacaaaagagttatcagtagcaatagcagaatcatcagcaatgagtggagattcacaacaaccacaacaaattactcctagaaaaagaggaagaccaagaaagattattagtattgtaaaagaagatgaagaagaagtttctgctgaattaaagaaactcaaaacaaatgaagttgaagaatcacaaggtgaaaacaaaaaagaagatgaatttgaagaggataaaaatttacaaccacaaaagcaacaacctacaaagagcagagctagaagaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="117386" stop="119913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117685" g_stop="117794" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117795" i_stop="119289" i_length="1495">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119290" g_stop="119612" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="433" r_length="323" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E324932" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117685" e_stop="117794"/>
          <exon e_start="119290" e_stop="119612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTTTTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAAGTAAGTTATTCATTTCTTTTACTTTTTCTTATCATCTTTGCTTTGGGTATGTTGTGTTGGGTTAATTACTAGGGGGTGGGGGTGTATAGATTTATTTATATGCAAAAAAGAGTTTTTGAGTAATTTTCAAGATTGGATTTTCTTATCATATACCACAAGGGTGTATATATATATGCAAAAGAGAACACCAAAAATCTTGAAGATTTGATTTTTTTTTTTGTGAGTAATTTTCAAGATTGGGTTTTTATTAAGAGTGTATAATTATATGCAAAAGAGAGCACTAAAAGCTTTGAAGATTGAAATTTTTACTTTGTGGGTAGTTTCAAGATTAGATTTTTAAGGTTACATATGCAAAAGAGAACACTAGATATTTTGAAGATTGAATTTTTATTTTGTGGGTAGTTTCAAGATTTGAATTTTAAGGTTATATATGCAAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGGATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTCAAGATTGGATTTAAAGGTTATATGTGCAAAAGAGAATACTACAAACCTTAAATATTGAATTTTTATTTTGTGGGTAGTTCCAAGATTGGATTTTTAAGGCTATATATGCAAATGAGAGCATTGGAAACATTAAAGATTGAATTTTCATTTTGTGGGTAGTTTCAAGATTGGATTTTAAAGGTAATATATACAAAAGAGAACACTAAAAACCTTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGATTGGATTTTTAAGTCTATATATGCAAATGAGACCACTAGAGACATTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGGTTGAATTTTTATTTTGTGGGTAGTTTCAAGATTGAATTTTTTTTAAGGTTATATATGCAAAAGAAAACACTAGAAATCTTAAAGATAGGATTTTTATGTTGTGGTTTGTTTTCAAAATTGGATTTTAATTATCATATGTAGCTAAAAGAAAGCTCTAGAGGCCTTAAACTTTGGGGATTTTTATTTTTGGGTAATTTTCAAGATTGAATTTTGTTATCATATATACTAAGAGAGAGCAATAGAAACCTTAAAAATTGAATTTTTGTTTCTTGGAGTTTTTCAAGATTCTATTTTTATCATATTATAAGCTTTTGAAATGACTAAATTAGTTTAGTGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAA</genome_strand>
        <mrna_strand>GAGGGTTTTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACCACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAAGAGCAGAGCTAGAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E689207" ref_strand="+" ref_description="SGN-E689207 [t3_tus_80_J05]">
      <seq>cgtttttgtatgtaaagatgaaaggttttgcttagcaccaaatgagctaaacacatgagttatttcttatgaaaaaaaaaatattattagctctaccatctcaaaaaagggattgtcacaaagatggatgggaaagaaaaaagttgtgaaaaaaacaaaaaagttatcagtagcaatagcaaaatcatcagcaatgagtggagattcacaacaacaacaacaaattactcctagaaaaagaggaaaaccaagaaagattattagtattgtaaaaaaaaatgaaaaaaaagtttctgctgaattaaagaaactcaaaacaaatgaagttgaaaaatcacaaggtgaaaacaaaaaaaaaaatgaatttgaagaggataaaaatttacaaccacaaaagcaacaacctacaaggagcaaagctagaaaaaaaagcaaaccaagaaagagttgctaatttaattttttccgatcaacagtattcccacttatcctctaacgatgtgactctaaatggatcgataatagatgtgctaaactacttgagctactaaaattcaggtgtcaagaatcccctttttcttttaggtaatttttgaaacaaagtaatttcatctttcctagtttaatttcttagtgctatagctagtttttaatttttttttaattttgttgtttagtatgtctattttaattgtgaggaatattttagttagggagcaattgttattagctttacactctggattgaattgtgatatgtcacattaatgactttttgtgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="117388" stop="120265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117687" g_stop="117794" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117795" i_stop="119289" i_length="1495">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119290" g_stop="119965" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="784" r_length="676" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="785" polyA_stop="794"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E689207" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117687" e_stop="117794"/>
          <exon e_start="119290" e_stop="119965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAAGTAAGTTATTCATTTCTTTTACTTTTTCTTATCATCTTTGCTTTGGGTATGTTGTGTTGGGTTAATTACTAGGGGGTGGGGGTGTATAGATTTATTTATATGCAAAAAAGAGTTTTTGAGTAATTTTCAAGATTGGATTTTCTTATCATATACCACAAGGGTGTATATATATATGCAAAAGAGAACACCAAAAATCTTGAAGATTTGATTTTTTTTTTTGTGAGTAATTTTCAAGATTGGGTTTTTATTAAGAGTGTATAATTATATGCAAAAGAGAGCACTAAAAGCTTTGAAGATTGAAATTTTTACTTTGTGGGTAGTTTCAAGATTAGATTTTTAAGGTTACATATGCAAAAGAGAACACTAGATATTTTGAAGATTGAATTTTTATTTTGTGGGTAGTTTCAAGATTTGAATTTTAAGGTTATATATGCAAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGGATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTCAAGATTGGATTTAAAGGTTATATGTGCAAAAGAGAATACTACAAACCTTAAATATTGAATTTTTATTTTGTGGGTAGTTCCAAGATTGGATTTTTAAGGCTATATATGCAAATGAGAGCATTGGAAACATTAAAGATTGAATTTTCATTTTGTGGGTAGTTTCAAGATTGGATTTTAAAGGTAATATATACAAAAGAGAACACTAAAAACCTTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGATTGGATTTTTAAGTCTATATATGCAAATGAGACCACTAGAGACATTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGGTTGAATTTTTATTTTGTGGGTAGTTTCAAGATTGAATTTTTTTTAAGGTTATATATGCAAAAGAAAACACTAGAAATCTTAAAGATAGGATTTTTATGTTGTGGTTTGTTTTCAAAATTGGATTTTAATTATCATATGTAGCTAAAAGAAAGCTCTAGAGGCCTTAAACTTTGGGGATTTTTATTTTTGGGTAATTTTCAAGATTGAATTTTGTTATCATATATACTAAGAGAGAGCAATAGAAACCTTAAAAATTGAATTTTTGTTTCTTGGAGTTTTTCAAGATTCTATTTTTATCATATTATAAGCTTTTGAAATGACTAAATTAGTTTAGTGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCTGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATCGATCGATGATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGCTAGTTTTTAATTTTTTTTTAATTTTGTTGTTTAGTATGTCTATTTTAATTGTGAGGAATATTTTAGTTAGGGAGCAATTGTTATTAGCTTTACACTCTGGATTGAATTGTGATATGTCACATTAATGAATTTTTGTGTTAA</genome_strand>
        <mrna_strand>CGTTTTTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAATGAGCTAAACACATGAGTTATTTCTTATGAAAAAAAAAATATTATTAGCTCTACCATCTCAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTGTCACAAAGATGGATGGGAAAGAAAAAAGTTGTGAAAAAAACAAAAAAGTTATCAGTAGCAATAGCAAAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAAACCAAGAAAGATTATTAGTATTGTAAAAAAAAATGAAAAAAAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAAAATCACAAGGTGAAAACAAAAAAAAAAATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAAAGCTAGAAAAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCCGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTAAATGGATCGATAATAGATGTGCTAAACTACTTGAGCTACTAAAATTCAGGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGCTAGTTTTTAATTTTTTTTTAATTTTGTTGTTTAGTATGTCTATTTTAATTGTGAGGAATATTTTAGTTAGGGAGCAATTGTTATTAGCTTTACACTCTGGATTGAATTGTGATATGTCACATTAATGACTTTTTGTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E377156" ref_strand="+" ref_description="SGN-E377156 [TUS-21-K7]">
      <seq>ttgtatgtaaagatgaaaggttttgcttagcaccaaaagagctaaacacatngagttatttcttatgaaaaaaaaaaatattattagctctaccatctcataaaaattgatgggaaagaagaaagttgtgaagaaaacaaaagagttatcagtagcaatagcagaatcatcagcaatgagtggagattcacaacaacaacaacaaattactcctagaaaaagaggaagaccaagaaagattattagtattgtaaaagaagatgaagaagaagtttctgctgaattaaagaaactcaaaacaaatgaagttgaagaatcacaaggtgaaaacaaaaaagaagatgaatttgaagaggataaaaatttacaaccacaaaagcaacaacctacaaggagcagagctagaagaaaaagcaaaccaagaaagagttgctaatttaattttttccgatcaacagtattcccacttatcctctaacgatgtgactctgaatggatcgataatagatgtgctaaactacttgagctactaaaattcatgtgtcaagaatcccctttttcttttaggtaatttttgaaacaaagtaatttcatctttcctagtttaattttcttagtgctatagctagttttttnttttttttttattttgttgtttagtatgtctatttttattgtgaggaatattttagttagggagcaattgttattagctttacactctggattgaattgtgatatgtccattaatggaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="117392" stop="120253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117692" g_stop="117794" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117795" i_stop="119304" i_length="1510">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.662" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119305" g_stop="119952" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="753" r_length="648" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="754" polyA_stop="781"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E377156" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117692" e_stop="117794"/>
          <exon e_start="119305" e_stop="119952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACAT-GAGTTATTTCTTATGAAAAAAAAA-ATATTATTAGCTCTACCATCTCATAAAAGTAAGTTATTCATTTCTTTTACTTTTTCTTATCATCTTTGCTTTGGGTATGTTGTGTTGGGTTAATTACTAGGGGGTGGGGGTGTATAGATTTATTTATATGCAAAAAAGAGTTTTTGAGTAATTTTCAAGATTGGATTTTCTTATCATATACCACAAGGGTGTATATATATATGCAAAAGAGAACACCAAAAATCTTGAAGATTTGATTTTTTTTTTTGTGAGTAATTTTCAAGATTGGGTTTTTATTAAGAGTGTATAATTATATGCAAAAGAGAGCACTAAAAGCTTTGAAGATTGAAATTTTTACTTTGTGGGTAGTTTCAAGATTAGATTTTTAAGGTTACATATGCAAAAGAGAACACTAGATATTTTGAAGATTGAATTTTTATTTTGTGGGTAGTTTCAAGATTTGAATTTTAAGGTTATATATGCAAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGGATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTCAAGATTGGATTTAAAGGTTATATGTGCAAAAGAGAATACTACAAACCTTAAATATTGAATTTTTATTTTGTGGGTAGTTCCAAGATTGGATTTTTAAGGCTATATATGCAAATGAGAGCATTGGAAACATTAAAGATTGAATTTTCATTTTGTGGGTAGTTTCAAGATTGGATTTTAAAGGTAATATATACAAAAGAGAACACTAAAAACCTTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGATTGGATTTTTAAGTCTATATATGCAAATGAGACCACTAGAGACATTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGGTTGAATTTTTATTTTGTGGGTAGTTTCAAGATTGAATTTTTTTTAAGGTTATATATGCAAAAGAAAACACTAGAAATCTTAAAGATAGGATTTTTATGTTGTGGTTTGTTTTCAAAATTGGATTTTAATTATCATATGTAGCTAAAAGAAAGCTCTAGAGGCCTTAAACTTTGGGGATTTTTATTTTTGGGTAATTTTCAAGATTGAATTTTGTTATCATATATACTAAGAGAGAGCAATAGAAACCTTAAAAATTGAATTTTTGTTTCTTGGAGTTTTTCAAGATTCTATTTTTATCATATTATAAGCTTTTGAAATGACTAAATTAGTTTAGTGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCTGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATCGATCGATGATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAA-TTTCTTAGTGCTATAGCTAGTTTTTAATTTTTTTTTAATTTTGTTGTTTAGTATGTCTATTTTAATTGTGAGGAATATTTTAGTTAGGGAGCAATTGTTATTAGCTTTACACTCTGGATTGAATTGTGATATGTCACATTAATGA</genome_strand>
        <mrna_strand>TTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATNGAGTTATTTCTTATGAAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCCGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATGGATCGATAATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTTCTTAGTGCTATAGCTAGTTTTTTNTTTTTTTTTTATTTTGTTGTTTAGTATGTCTATTTTTATTGTGAGGAATATTTTAGTTAGGGAGCAATTGTTATTAGCTTTACACTCTGGATTGAATTGTGATATGTC-CATTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E377700" ref_strand="+" ref_description="SGN-E377700 [TUS-20-G12]">
      <seq>ttgtatgtaaagatgaaaggttttgcttagcaccaaaagagctaaacacatgagttatttcttatgaaaaaaaaaaatattattagctctaccatctcataaaaattgatgggaaagaagaaagttgtgaagaaaacaaaagagttatcagtagcaatagcagaatcatcagcaatgagtggagattcacaacaacaacaacaaattactcctagaaaaagaggaagaccaagaaagattattagtattgtaaaagaagatgaagaagaagtttctgctgaattaaagaaactcaaaacaaatgaagttgaagaatcacaaggtgaaaacaaaaaagaagatgaatttgaagaggataaaaatttacaaccacaaaagcaacaacctacaaggagcagagctagaagaaaaagcaaaccaagaaagagttgctaatttaattttttccgatcaacagtattcccacttatcctctaacgatgtgactctgaatggatcgataatagatgtgctaaactacttgagctactaaaattcatgtgtcaagaatcccctttttcttttaggtaatttttgaaacaaagtaatttcatctttcctagtttaatttcttagtgctatagctagtttttaatttttttttaattttgttgtttagtatgtctattttaattgtgaggaatattttagttagggagcaattgttattagctttacactctggattgaattgtgatatgtcacatttatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="117392" stop="120253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117692" g_stop="117794" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117795" i_stop="119304" i_length="1510">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.662" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119305" g_stop="119952" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="752" r_length="648" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="753" polyA_stop="795"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E377700" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117692" e_stop="117794"/>
          <exon e_start="119305" e_stop="119952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAA-AAATATTATTAGCTCTACCATCTCATAAAAGTAAGTTATTCATTTCTTTTACTTTTTCTTATCATCTTTGCTTTGGGTATGTTGTGTTGGGTTAATTACTAGGGGGTGGGGGTGTATAGATTTATTTATATGCAAAAAAGAGTTTTTGAGTAATTTTCAAGATTGGATTTTCTTATCATATACCACAAGGGTGTATATATATATGCAAAAGAGAACACCAAAAATCTTGAAGATTTGATTTTTTTTTTTGTGAGTAATTTTCAAGATTGGGTTTTTATTAAGAGTGTATAATTATATGCAAAAGAGAGCACTAAAAGCTTTGAAGATTGAAATTTTTACTTTGTGGGTAGTTTCAAGATTAGATTTTTAAGGTTACATATGCAAAAGAGAACACTAGATATTTTGAAGATTGAATTTTTATTTTGTGGGTAGTTTCAAGATTTGAATTTTAAGGTTATATATGCAAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGGATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTCAAGATTGGATTTAAAGGTTATATGTGCAAAAGAGAATACTACAAACCTTAAATATTGAATTTTTATTTTGTGGGTAGTTCCAAGATTGGATTTTTAAGGCTATATATGCAAATGAGAGCATTGGAAACATTAAAGATTGAATTTTCATTTTGTGGGTAGTTTCAAGATTGGATTTTAAAGGTAATATATACAAAAGAGAACACTAAAAACCTTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGATTGGATTTTTAAGTCTATATATGCAAATGAGACCACTAGAGACATTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGGTTGAATTTTTATTTTGTGGGTAGTTTCAAGATTGAATTTTTTTTAAGGTTATATATGCAAAAGAAAACACTAGAAATCTTAAAGATAGGATTTTTATGTTGTGGTTTGTTTTCAAAATTGGATTTTAATTATCATATGTAGCTAAAAGAAAGCTCTAGAGGCCTTAAACTTTGGGGATTTTTATTTTTGGGTAATTTTCAAGATTGAATTTTGTTATCATATATACTAAGAGAGAGCAATAGAAACCTTAAAAATTGAATTTTTGTTTCTTGGAGTTTTTCAAGATTCTATTTTTATCATATTATAAGCTTTTGAAATGACTAAATTAGTTTAGTGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCTGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATCGATCGATGATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGCTAGTTTTTAATTTTTTTTTAATTTTGTTGTTTAGTATGTCTATTTTAATTGTGAGGAATATTTTAGTTAGGGAGCAATTGTTATTAGCTTTACACTCTGGATTGAATTGTGATATGTCACATTAATGA</genome_strand>
        <mrna_strand>TTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCCGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATGGATCGATAATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGCTAGTTTTTAATTTTTTTTTAATTTTGTTGTTTAGTATGTCTATTTTAATTGTGAGGAATATTTTAGTTAGGGAGCAATTGTTATTAGCTTTACACTCTGGATTGAATTGTGATATGTCACATTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E233189" ref_strand="+" ref_description="SGN-E233189 [cLED-6-L23]">
      <seq>ttgtatgtaaagatgaaaggttttgcttagcaccaaaagagctaaacacatgagttatttcttatgaaaaaaaaaaatattattagctctaccatctcataaaaattgatgggaaagaagaaagttgtgaagaaaacaaaagagttatcagtagcaatagcagaatcatcagcaatgagtggagattcacaacaacaacaacaaattactcctagaaaaagaggaagaccaagaaagattattagtattgtaaaagaagatgaagaagaagtttctgctgaattaaagaaactcaaaacaaatgaagttgaagaatcacaaggtgaaaacaaaaaagaagatgaatttgaagaggataaaaatttacaaccacaaaagcaacaacctacaaggagcagagctagaagaaaaagcaaaccaagaaagagttgctaatttaattttttccgatcaacagtattcccacttatcctctaacgatgtgactctgaatggatcgataatagatgtgctaaactacttgagctactaaaattcatgtgtcaagaatcccctttttcttttaggtaatttttgaaacaaagtaatttcatctttcctagtttaatttcttagtgctatagctagtttttaattttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="117392" stop="120143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117692" g_stop="117794" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117795" i_stop="119304" i_length="1510">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.662" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119305" g_stop="119843" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="643" r_length="539" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E233189" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117692" e_stop="117794"/>
          <exon e_start="119305" e_stop="119843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAA-AAATATTATTAGCTCTACCATCTCATAAAAGTAAGTTATTCATTTCTTTTACTTTTTCTTATCATCTTTGCTTTGGGTATGTTGTGTTGGGTTAATTACTAGGGGGTGGGGGTGTATAGATTTATTTATATGCAAAAAAGAGTTTTTGAGTAATTTTCAAGATTGGATTTTCTTATCATATACCACAAGGGTGTATATATATATGCAAAAGAGAACACCAAAAATCTTGAAGATTTGATTTTTTTTTTTGTGAGTAATTTTCAAGATTGGGTTTTTATTAAGAGTGTATAATTATATGCAAAAGAGAGCACTAAAAGCTTTGAAGATTGAAATTTTTACTTTGTGGGTAGTTTCAAGATTAGATTTTTAAGGTTACATATGCAAAAGAGAACACTAGATATTTTGAAGATTGAATTTTTATTTTGTGGGTAGTTTCAAGATTTGAATTTTAAGGTTATATATGCAAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGGATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTCAAGATTGGATTTAAAGGTTATATGTGCAAAAGAGAATACTACAAACCTTAAATATTGAATTTTTATTTTGTGGGTAGTTCCAAGATTGGATTTTTAAGGCTATATATGCAAATGAGAGCATTGGAAACATTAAAGATTGAATTTTCATTTTGTGGGTAGTTTCAAGATTGGATTTTAAAGGTAATATATACAAAAGAGAACACTAAAAACCTTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGATTGGATTTTTAAGTCTATATATGCAAATGAGACCACTAGAGACATTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGGTTGAATTTTTATTTTGTGGGTAGTTTCAAGATTGAATTTTTTTTAAGGTTATATATGCAAAAGAAAACACTAGAAATCTTAAAGATAGGATTTTTATGTTGTGGTTTGTTTTCAAAATTGGATTTTAATTATCATATGTAGCTAAAAGAAAGCTCTAGAGGCCTTAAACTTTGGGGATTTTTATTTTTGGGTAATTTTCAAGATTGAATTTTGTTATCATATATACTAAGAGAGAGCAATAGAAACCTTAAAAATTGAATTTTTGTTTCTTGGAGTTTTTCAAGATTCTATTTTTATCATATTATAAGCTTTTGAAATGACTAAATTAGTTTAGTGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCTGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATCGATCGATGATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGCTAGTTTTTAATTTTTTTTT</genome_strand>
        <mrna_strand>TTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCCGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATGGATCGATAATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGCTAGTTTTTAATTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E236546" ref_strand="+" ref_description="SGN-E236546 [cLED-13-A16]">
      <seq>ttgtatgtaaagatgaaaggttttgcttagcaccaaaagagctaaacacatgagttatttcttatgaaaaaaaaaaatattattagctctaccatctcataaaaattgatgggaaagaagaaagttgtgaagaaaacaaaagagttatcagtagcaatagcagaatcatcagcaatgagtggagattcacaacaacaacaacaaattactcctagaaaaagaggaagaccaagaaagattattagtattgtaaaagaagatgaagaagaagtttctgctgaattaaagaaactcaaaacaaatgaagttgaagaatcacaaggtgaaaacaaaaaagaagatgaatttgaagaggataaaaatttacaaccacaaaagcaacaacctacaaggagcagagctagaagaaaaagcaaaccaagaaagagttgctaatttaattttttccgatcaacagtattcccacttatcctctaacgatgtgactctgaatggatcgataatagatgtgctaaactacttgagctactaaaattcatgtgtcaagaatcccctttttcttttaggtaatttttgaaacaaagtaatttcatctttcctagtttaatttcttagtgctatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="117392" stop="120124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117692" g_stop="117794" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117795" i_stop="119304" i_length="1510">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.662" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119305" g_stop="119824" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="624" r_length="520" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E236546" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117692" e_stop="117794"/>
          <exon e_start="119305" e_stop="119824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAA-AAATATTATTAGCTCTACCATCTCATAAAAGTAAGTTATTCATTTCTTTTACTTTTTCTTATCATCTTTGCTTTGGGTATGTTGTGTTGGGTTAATTACTAGGGGGTGGGGGTGTATAGATTTATTTATATGCAAAAAAGAGTTTTTGAGTAATTTTCAAGATTGGATTTTCTTATCATATACCACAAGGGTGTATATATATATGCAAAAGAGAACACCAAAAATCTTGAAGATTTGATTTTTTTTTTTGTGAGTAATTTTCAAGATTGGGTTTTTATTAAGAGTGTATAATTATATGCAAAAGAGAGCACTAAAAGCTTTGAAGATTGAAATTTTTACTTTGTGGGTAGTTTCAAGATTAGATTTTTAAGGTTACATATGCAAAAGAGAACACTAGATATTTTGAAGATTGAATTTTTATTTTGTGGGTAGTTTCAAGATTTGAATTTTAAGGTTATATATGCAAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGGATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTCAAGATTGGATTTAAAGGTTATATGTGCAAAAGAGAATACTACAAACCTTAAATATTGAATTTTTATTTTGTGGGTAGTTCCAAGATTGGATTTTTAAGGCTATATATGCAAATGAGAGCATTGGAAACATTAAAGATTGAATTTTCATTTTGTGGGTAGTTTCAAGATTGGATTTTAAAGGTAATATATACAAAAGAGAACACTAAAAACCTTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGATTGGATTTTTAAGTCTATATATGCAAATGAGACCACTAGAGACATTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGGTTGAATTTTTATTTTGTGGGTAGTTTCAAGATTGAATTTTTTTTAAGGTTATATATGCAAAAGAAAACACTAGAAATCTTAAAGATAGGATTTTTATGTTGTGGTTTGTTTTCAAAATTGGATTTTAATTATCATATGTAGCTAAAAGAAAGCTCTAGAGGCCTTAAACTTTGGGGATTTTTATTTTTGGGTAATTTTCAAGATTGAATTTTGTTATCATATATACTAAGAGAGAGCAATAGAAACCTTAAAAATTGAATTTTTGTTTCTTGGAGTTTTTCAAGATTCTATTTTTATCATATTATAAGCTTTTGAAATGACTAAATTAGTTTAGTGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCTGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATCGATCGATGATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGC</genome_strand>
        <mrna_strand>TTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCCGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATGGATCGATAATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E238105" ref_strand="+" ref_description="SGN-E238105 [cLED-22-I20]">
      <seq>aggtaaagatgaaaggttttgcttagcaccaaaagagctaaacacatgagttatttcttatgaaaaaaaaaaatattattagctctaccatctcataaaaattgatgggaaagaagaaagttgtgaagaaaacaaaagagttatcagtggcaatagcagaatcatcagcaatgagtggagattcacaacaacaacagcaaattactcctagaaaaagaggaagaccaagaaagatttttagtattggaaaagaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="117396" stop="119761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117696" g_stop="117794" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117795" i_stop="119304" i_length="1510">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.662" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119305" g_stop="119461" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="257" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E238105" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117696" e_stop="117794"/>
          <exon e_start="119305" e_stop="119461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAAAA-ATATTATTAGCTCTACCATCTCATAAAAGTAAGTTATTCATTTCTTTTACTTTTTCTTATCATCTTTGCTTTGGGTATGTTGTGTTGGGTTAATTACTAGGGGGTGGGGGTGTATAGATTTATTTATATGCAAAAAAGAGTTTTTGAGTAATTTTCAAGATTGGATTTTCTTATCATATACCACAAGGGTGTATATATATATGCAAAAGAGAACACCAAAAATCTTGAAGATTTGATTTTTTTTTTTGTGAGTAATTTTCAAGATTGGGTTTTTATTAAGAGTGTATAATTATATGCAAAAGAGAGCACTAAAAGCTTTGAAGATTGAAATTTTTACTTTGTGGGTAGTTTCAAGATTAGATTTTTAAGGTTACATATGCAAAAGAGAACACTAGATATTTTGAAGATTGAATTTTTATTTTGTGGGTAGTTTCAAGATTTGAATTTTAAGGTTATATATGCAAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGGATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTCAAGATTGGATTTAAAGGTTATATGTGCAAAAGAGAATACTACAAACCTTAAATATTGAATTTTTATTTTGTGGGTAGTTCCAAGATTGGATTTTTAAGGCTATATATGCAAATGAGAGCATTGGAAACATTAAAGATTGAATTTTCATTTTGTGGGTAGTTTCAAGATTGGATTTTAAAGGTAATATATACAAAAGAGAACACTAAAAACCTTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGATTGGATTTTTAAGTCTATATATGCAAATGAGACCACTAGAGACATTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGGTTGAATTTTTATTTTGTGGGTAGTTTCAAGATTGAATTTTTTTTAAGGTTATATATGCAAAAGAAAACACTAGAAATCTTAAAGATAGGATTTTTATGTTGTGGTTTGTTTTCAAAATTGGATTTTAATTATCATATGTAGCTAAAAGAAAGCTCTAGAGGCCTTAAACTTTGGGGATTTTTATTTTTGGGTAATTTTCAAGATTGAATTTTGTTATCATATATACTAAGAGAGAGCAATAGAAACCTTAAAAATTGAATTTTTGTTTCTTGGAGTTTTTCAAGATTCTATTTTTATCATATTATAAGCTTTTGAAATGACTAAATTAGTTTAGTGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGAT</genome_strand>
        <mrna_strand>AGGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTGGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAGCAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTTTTAGTATTGGAAAAGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E231641" ref_strand="+" ref_description="SGN-E231641 [cLED-4-M1]">
      <seq>tatttcttatgaaaaaaaaaatattattagctctaccatctcataaaaattgatgggaaagaagaaagttgtgaagaaaacaaaagagttatcagtagcaatagcagaatcatcagcaatgagtggagattcacaacaacaacaacaaattactcctagaaaaagaggaagaccaagaaagattattagtattgtaaaagaagatgaagaagaagtttctgctgaattaaagaaactcaaaacaaatgaagttgaagaatcacaaggtgaaaacaaaaaagaagatgaatttgaagaggataaaaatttacaaccacaaaagcaacaacctacaaggagcagagctagaagaaaaagcaaaccaagaaagagttgctaatttaattttttccgatcaacagtattcccacttatcctctaacgatgtgactctgaatggatcgataatagatgtgctaaactacttgagctactaaaattcatgtgtcaagaatcccctttttcttttaggtaatttttgaaacaaagtaatttcatctttcctagtttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="117447" stop="120107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117747" g_stop="117794" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117795" i_stop="119304" i_length="1510">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.662" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119305" g_stop="119807" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="551" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E231641" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117747" e_stop="117794"/>
          <exon e_start="119305" e_stop="119807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCTTATGAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAAGTAAGTTATTCATTTCTTTTACTTTTTCTTATCATCTTTGCTTTGGGTATGTTGTGTTGGGTTAATTACTAGGGGGTGGGGGTGTATAGATTTATTTATATGCAAAAAAGAGTTTTTGAGTAATTTTCAAGATTGGATTTTCTTATCATATACCACAAGGGTGTATATATATATGCAAAAGAGAACACCAAAAATCTTGAAGATTTGATTTTTTTTTTTGTGAGTAATTTTCAAGATTGGGTTTTTATTAAGAGTGTATAATTATATGCAAAAGAGAGCACTAAAAGCTTTGAAGATTGAAATTTTTACTTTGTGGGTAGTTTCAAGATTAGATTTTTAAGGTTACATATGCAAAAGAGAACACTAGATATTTTGAAGATTGAATTTTTATTTTGTGGGTAGTTTCAAGATTTGAATTTTAAGGTTATATATGCAAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGGATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTCAAGATTGGATTTAAAGGTTATATGTGCAAAAGAGAATACTACAAACCTTAAATATTGAATTTTTATTTTGTGGGTAGTTCCAAGATTGGATTTTTAAGGCTATATATGCAAATGAGAGCATTGGAAACATTAAAGATTGAATTTTCATTTTGTGGGTAGTTTCAAGATTGGATTTTAAAGGTAATATATACAAAAGAGAACACTAAAAACCTTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGATTGGATTTTTAAGTCTATATATGCAAATGAGACCACTAGAGACATTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGGTTGAATTTTTATTTTGTGGGTAGTTTCAAGATTGAATTTTTTTTAAGGTTATATATGCAAAAGAAAACACTAGAAATCTTAAAGATAGGATTTTTATGTTGTGGTTTGTTTTCAAAATTGGATTTTAATTATCATATGTAGCTAAAAGAAAGCTCTAGAGGCCTTAAACTTTGGGGATTTTTATTTTTGGGTAATTTTCAAGATTGAATTTTGTTATCATATATACTAAGAGAGAGCAATAGAAACCTTAAAAATTGAATTTTTGTTTCTTGGAGTTTTTCAAGATTCTATTTTTATCATATTATAAGCTTTTGAAATGACTAAATTAGTTTAGTGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCTGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATCGATCGATGATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAA</genome_strand>
        <mrna_strand>TATTTCTTATGAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCCGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATGGATCGATAATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E549877" ref_strand="+" ref_description="SGN-E549877 [TUS-6-I1]">
      <seq>caaaatagaaaatactagaaaccttagaaattgaatttttatttagtgggtagttttaagattgaattttaaggttatataggcaaaggagaggaaaattcaatctttaaggtctctagtcctttaaaagattggtttgttattttgtgggtagttttcaagattggattttaaaggtaatatatgcaaaagagaaatacttgaaaccttaaaagattgaatttttatttgtgggtattttcaagattggatttttaaggtaatatatacataagggaacactaaaaaaccttaaagattgaattttttattttgtgggtaatttcaagattgaattttttaggttatatatgcaaaagagagctatagaaaccttaaagattggattttagttttcaagattggatttaaaggttatatgtgcaaaagagaatactacaaaccttaaatattgaatttttattttgtgggtagttccaagattggatttttaaggctatatatgcaaatgagagcattggaaacattaaagattgaattttcattttgtgggtagtttcaagattggattttaaaggtaatatatacaaaagagaacactaaaaaccttaaagattgaatttttattttgtgggtattttcaagattggatttttaagtctatatatgcaaatgagaccactagagacattaaagattgaatttttattttgtgggtattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="117928" stop="119252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118228" g_stop="118952" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E549877" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118228" e_stop="118952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGGATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTCAAGATTGGATTTAAAGGTTATATGTGCAAAAGAGAATACTACAAACCTTAAATATTGAATTTTTATTTTGTGGGTAGTTCCAAGATTGGATTTTTAAGGCTATATATGCAAATGAGAGCATTGGAAACATTAAAGATTGAATTTTCATTTTGTGGGTAGTTTCAAGATTGGATTTTAAAGGTAATATATACAAAAGAGAACACTAAAAACCTTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGATTGGATTTTTAAGTCTATATATGCAAATGAGACCACTAGAGACATTAAAGATTGAATTTTTATTTTGTGGGTATTTTCA</genome_strand>
        <mrna_strand>CAAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGAATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTCAAGATTGGATTTAAAGGTTATATGTGCAAAAGAGAATACTACAAACCTTAAATATTGAATTTTTATTTTGTGGGTAGTTCCAAGATTGGATTTTTAAGGCTATATATGCAAATGAGAGCATTGGAAACATTAAAGATTGAATTTTCATTTTGTGGGTAGTTTCAAGATTGGATTTTAAAGGTAATATATACAAAAGAGAACACTAAAAACCTTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGATTGGATTTTTAAGTCTATATATGCAAATGAGACCACTAGAGACATTAAAGATTGAATTTTTATTTTGTGGGTATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E243720" ref_strand="+" ref_description="SGN-E243720 [cLED-35-C2]">
      <seq>aaaatagaaaatactagaaaccttagaaattgaatttttatttagtgggtagttttaagattgaattttaaggttatataggcaaaggagaggaaaattcaatctttaaggtctctagtcctttaaaagattggtttgttattttgtgggtagttttcaagattggattttaaaggtaatatatgcaaaagagaaatacttgaaaccttaaaagattgaatttttatttgtgggtattttcaagattggatttttaaggtaatatatacctaagggaacactaaaaaaccttaaagattgaattttttattttgtgggtaatttcaagattgaattttttaggttatatatgcaaaagagagctatagaaaccttaaagattggattttagttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="117929" stop="118924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118229" g_stop="118624" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E243720" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118229" e_stop="118624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGGATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTC</genome_strand>
        <mrna_strand>AAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGAATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACCTAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E268253" ref_strand="+" ref_description="SGN-E268253 [cLEM-3-I22]">
      <seq>aacactagaaatcttaaagataggatttttatgttgtggtttgttttcaaaattggattttaattatcatatgtagctaaaagaaagctctagaggccttaaactttggggatttttatttttgggtaattttcaagattggattttgttatcatatatactaagagagagcaatagaaaccttaaaaattgaatttttgtttcttggagtttttcaagattctatttttatcatattataagcttttgaaatgactaaattagtttagtggattgtcacaaagattgatgggaaagaagaaagttgtgaagaaaacaaaagagttatcagtagcaatagcagaatcatcagcaatgagtggagattcacaacaacaacaacaaattactcctagaaaaagaggaagaccaagaaagattattagtattgtaaaagaagatgaagaagaagtttctgctgaattaaagaaactcaaaacaaatgaagttgaagaatcacaaggtgaaaacaaaaaagaagatgaatttgaagaggataaaaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="118721" stop="119866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119021" g_stop="119566" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E268253" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119021" e_stop="119566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTAGAAATCTTAAAGATAGGATTTTTATGTTGTGGTTTGTTTTCAAAATTGGATTTTAATTATCATATGTAGCTAAAAGAAAGCTCTAGAGGCCTTAAACTTTGGGGATTTTTATTTTTGGGTAATTTTCAAGATTGAATTTTGTTATCATATATACTAAGAGAGAGCAATAGAAACCTTAAAAATTGAATTTTTGTTTCTTGGAGTTTTTCAAGATTCTATTTTTATCATATTATAAGCTTTTGAAATGACTAAATTAGTTTAGTGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTA</genome_strand>
        <mrna_strand>AACACTAGAAATCTTAAAGATAGGATTTTTATGTTGTGGTTTGTTTTCAAAATTGGATTTTAATTATCATATGTAGCTAAAAGAAAGCTCTAGAGGCCTTAAACTTTGGGGATTTTTATTTTTGGGTAATTTTCAAGATTGGATTTTGTTATCATATATACTAAGAGAGAGCAATAGAAACCTTAAAAATTGAATTTTTGTTTCTTGGAGTTTTTCAAGATTCTATTTTTATCATATTATAAGCTTTTGAAATGACTAAATTAGTTTAGTGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E284996" ref_strand="+" ref_description="SGN-E284996 [cLER-19-C14]">
      <seq>aaagattgatgggaaagaagaaagttgtgaagaaaacaaaagagttatcagtagcaatagcagaatcatcagcaatgagtggagattcacaacaacaacaacaaattactcctagaaaaagaggaagaccaagaaagattattagtattgtaaaagaagatgaagaagaagtttctgctgaattaaagaaactcaaaacaaatgaagttgaagaatcacaaggtgaaaacaaaaaagaagatgaatttgaagaggataaaaatttacaaccgcaaaagcaacaacctacaaggagcagagctagaagaaaaagcaaaccaagaaagagttgctaatttaattttttctgatcaacagtattcccacttatcctctaacgatgtgactctgaatcgatcgatgatagatgtgctaaactacttgagctactaaaatttatgtgtcaagaatcccctttttcttttaggtaatttttgaaacaaagtaatttcatcttggctagtttaatttcttaatgctatagctaggttctaattttttttttaattttggtggttagtatgtttattttaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="119001" stop="120174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119301" g_stop="119874" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E284996" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119301" e_stop="119874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCTGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATCGATCGATGATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGCTAGTTTTTAA-TTTTTTTTTAATTTTGTTGTTTAGTATGTCTATTTTAATT</genome_strand>
        <mrna_strand>AAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCGCAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCTGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATCGATCGATGATAGATGTGCTAAACTACTTGAGCTACTAAAATTTATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTGGCTAGTTTAATTTCTTAATGCTATAGCTAGGTTCTAATTTTTTTTTTAATTTTGGTGGTTAGTATGTTTATTTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E352085" ref_strand="+" ref_description="SGN-E352085 [cTOS-13-D24]">
      <seq>gaagatgtggatgcatattctagcctattcagcattgggaaacccgatttcattgaaatcaaaggtgtcacttattgtggaacgtcggctacatcaaagttgacaatggagaatgtcccttggcattctgatgtgaaggaattctctgaagccttggctaaaaagagcaacggagagtatgaggttgcctgtgagcacgtgcattcctgctgtgttcttctggctaaagtcgataagttcaaaatagacggtcaatggttcacgtggatagactacgagaagttccatgatctggtagcttctgggaaaccctttacaagtaaagattacatgacacccacaccatcttgggctgtctatggagctgaggaaggtggttttgacccagagcaattgcgtttcaaaaaagagcggcaccacagatcatctcgtcaggaaaatggttcttgaaatgttcgaagcaggttttcgttacctctgggatggcctaaaattttgttccttcgacttagattttgctttcctccattttcctatacaagttgcatttcactatataactgcagaagttgtcactgatatgaaaaatattgcttgtatgaacacttttgtatgttgtttcatacacaaattttaattaattttgattatataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="131992" stop="130526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131692" g_stop="131610" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131609" i_stop="131502" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131501" g_stop="131291" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="294" r_length="211" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131290" i_stop="131188" i_length="103">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.508" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131187" g_stop="130818" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="665" r_length="371" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E352085" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131692" e_stop="131610"/>
          <exon e_start="131501" e_stop="131291"/>
          <exon e_start="131187" e_stop="130818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAACGTAAGTTTTCCCCCTCCCCCTCACTTTTTTCCTTTCCCCTCCCTCTTCTCTTCTACTAGTTTATCCGATTTCAAAGTTCAGTTAAGCAATCAGGGAGGTTTGACACAGGTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAGGTTGCCTGTGAGCATGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCGCTAAGTTCAAAATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTGGTTGGTTACTTCTCTTGTTCATACCTCAGCACGTAAATTATAAGCATACCCTTCCCATTTCAATAGCGTAATCAATGTTTTTTAATCCCATGGCGCGCTACAGGTAGCTTCTGGGAAACCCTTTACAAGTAAAGATTACATGACACCTACACCATCTTGGGCTGTCTATGGAGCTGAGGAAGGTGGTTTTGACCCAGAGCAATTGCGTTTCAAAAAAGAGCGGCACCACAGATCATCTCGTCAGGAAAATGGTTCTTGAAATGTTCGAAGCAGGTTTTCGTTACCTCTGGGATGGCCTAAAATTTTGTTCCTTCGACTTAGATTTTGCTTTCCTCCATTTTCCTATACAAGTTGCATTTCACTATATAACTGCCGAAGTTGTCACTGATATGAAAAATATTGCTTGTATGAACAC-TTTGTATGTTGTTTCATACACAAATTTTAATTAATTTTGATTATATAAAACGATTGGA</genome_strand>
        <mrna_strand>GAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAAC............................................................................................................GTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAGGTTGCCTGTGAGCACGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCGATAAGTTCAAAATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTG.......................................................................................................GTAGCTTCTGGGAAACCCTTTACAAGTAAAGATTACATGACACCCACACCATCTTGGGCTGTCTATGGAGCTGAGGAAGGTGGTTTTGACCCAGAGCAATTGCGTTTCAAAAAAGAGCGGCACCACAGATCATCTCGTCAGGAAAATGGTTCTTGAAATGTTCGAAGCAGGTTTTCGTTACCTCTGGGATGGCCTAAAATTTTGTTCCTTCGACTTAGATTTTGCTTTCCTCCATTTTCCTATACAAGTTGCATTTCACTATATAACTGCAGAAGTTGTCACTGATATGAAAAATATTGCTTGTATGAACACTTTTGTATGTTGTTTCATACACAAATTTTAATTAATTTTGATTATATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E357463" ref_strand="+" ref_description="SGN-E357463 [cTOS-23-K7]">
      <seq>gcaaagaactgtctatcgtttgacactcgttaaagggtggaacacagaagatgtggatgcatattctagcctattcagcattgggaaacccgatttcattgaaatcaaaggtgtcacttattgtggaacgtcggctacatcaaagttgacaatggagaatgtcccttggcattctgatgtgaaggaattctctgaagccttggctaaaaagagcaacggagagtatgaagttgcctgtgagcacgtgcattcctgctgtgttcttctggctaaagtccataagttcaaaatagacgggcaatgggtcacgtggatagactaccaaaaattccatgatctggtaacttctgggaaaccccttaccagtaaagaatacctgacacccaccccatcttgggctggctattgaactgaagaaagggggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="132038" stop="130989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131738" g_stop="131610" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131609" i_stop="131502" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131501" g_stop="131291" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="340" r_length="211" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131290" i_stop="131188" i_length="103">
            <donor d_prob="0.828" d_score="0.90"/>
            <acceptor a_prob="0.508" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131187" g_stop="131102" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="426" r_length="86" r_score="0.837"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E357463" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131738" e_stop="131610"/>
          <exon e_start="131501" e_stop="131291"/>
          <exon e_start="131187" e_stop="131102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAACGTAAGTTTTCCCCCTCCCCCTCACTTTTTTCCTTTCCCCTCCCTCTTCTCTTCTACTAGTTTATCCGATTTCAAAGTTCAGTTAAGCAATCAGGGAGGTTTGACACAGGTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAGGTTGCCTGTGAGCATGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCGCTAAGTTCAAAATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTGGTTGGTTACTTCTCTTGTTCATACCTCAGCACGTAAATTATAAGCATACCCTTCCCATTTCAATAGCGTAATCAATGTTTTTTAATCCCATGGCGCGCTACAGGTAGCTTCTGGGAAACCCTTTACAAGTAAAGATTACATGACACCTACACCATCTTGGGCTGTCTATGGAGCTGAGGAAGGTGGTTT</genome_strand>
        <mrna_strand>GCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAAC............................................................................................................GTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAAGTTGCCTGTGAGCACGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCCATAAGTTCAAAATAGACGGGCAATGGGTCACGTGGATAGACTACCAAAAATTCCATGATCTG.......................................................................................................GTAACTTCTGGGAAACCCCTTACCAGTAAAGAATACCTGACACCCACCCCATCTTGGGCTGGCTATTGAACTGAAGAAAGGGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E353033" ref_strand="+" ref_description="SGN-E353033 [cTOS-14-B7]">
      <seq>gcaaagaactgtctatcgtttgacactcgttaaagggtggaacacagaagatgtggatgcatattctagcctattcagcattgggaaacccgatttcattgaaatcaaaggtgtcacttattgtggaacgtcggctacatcaaagttgacaatggagaatgtcccttggcattctgatgtgaaggaattctctgaagccttggctaaaaagaagcaacggagagtatgaggttgcctgtgagcacgtgcattcctgctgtgttcttctggctaaagtcgataagttcaaaatagacggtcaatggttcacgtggatagactacgagaagttccatgatctggtagcttctgggaaaaccctttacagtaaagattacatgacacccacaccatcttgggctgtctatggagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="132038" stop="130815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131738" g_stop="131610" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131609" i_stop="131502" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131501" g_stop="131291" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="341" r_length="212" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131290" i_stop="131188" i_length="103">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.508" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131187" g_stop="131115" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="414" r_length="73" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E353033" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131738" e_stop="131610"/>
          <exon e_start="131501" e_stop="131291"/>
          <exon e_start="131187" e_stop="131115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAACGTAAGTTTTCCCCCTCCCCCTCACTTTTTTCCTTTCCCCTCCCTCTTCTCTTCTACTAGTTTATCCGATTTCAAAGTTCAGTTAAGCAATCAGGGAGGTTTGACACAGGTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAG-AGCAACGGAGAGTATGAGGTTGCCTGTGAGCATGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCGCTAAGTTCAAAATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTGGTTGGTTACTTCTCTTGTTCATACCTCAGCACGTAAATTATAAGCATACCCTTCCCATTTCAATAGCGTAATCAATGTTTTTTAATCCCATGGCGCGCTACAGGTAGCTTCTGGG-AAACCCTTTACAAGTAAAGATTACATGACACCTACACCATCTTGGGCTGTCTATGGAGCTG</genome_strand>
        <mrna_strand>GCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAAC............................................................................................................GTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAAGCAACGGAGAGTATGAGGTTGCCTGTGAGCACGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCGATAAGTTCAAAATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTG.......................................................................................................GTAGCTTCTGGGAAAACCCTTTAC-AGTAAAGATTACATGACACCCACACCATCTTGGGCTGTCTATGGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E537988" ref_strand="+" ref_description="SGN-E537988 [TUS-56-N24]">
      <seq>ttaaagctgagcgtttgtctgagggtctttctcctacgcattgtgctttgtctctggttggtgagcctattatgtatccggaactagattcacttgtagatgatctgtacaggaggcggatttcgacttttcttgttactaatgagcagttcgctgtcgagattgagttattgaaaccaatcactcagttgtatgtcatcgtatatgcaggtacaaaggacagacttaaaagccattgacagaccactatttggagacttctgggagccatttcttgattctttgacagctcttatggagaaggagcaaagaactgtctatcgcttgacactcattaaagggtgtaacaccgaagatgtggatgcatattctaccctattcagcattgggaaacccgatttcattgaaatcaaatgtgtcacttattgtggaacgtgcgctacatcagagttgacaatggagaatgtcccctggcattctgatgtgaaggaattctctgaagccttggctacaaagagcagcggagagtatgaggttgcctgtgagcacgtgcattcctgctgtgatcttctggctcatgtcgataagttcaagatacacggtcgatggttcacgtggatagactacgagaagttccatgatctggtagcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="132774" stop="130981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132474" g_stop="132287" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132286" i_stop="132195" i_length="92">
            <donor d_prob="0.995" d_score="0.86"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132194" g_stop="132108" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="276" r_length="88" r_score="0.931"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132107" i_stop="131768" i_length="340">
            <donor d_prob="0.876" d_score="0.96"/>
            <acceptor a_prob="0.752" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131767" g_stop="131610" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="434" r_length="158" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131609" i_stop="131502" i_length="108">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131501" g_stop="131291" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="645" r_length="211" r_score="0.934"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="131290" i_stop="131188" i_length="103">
            <donor d_prob="0.828" d_score="0.96"/>
            <acceptor a_prob="0.508" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131187" g_stop="131178" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="655" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E537988" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132474" e_stop="132287"/>
          <exon e_start="132194" e_stop="132108"/>
          <exon e_start="131767" e_stop="131610"/>
          <exon e_start="131501" e_stop="131291"/>
          <exon e_start="131187" e_stop="131178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAGGTCTACTAGGCTTTATTCTTCTTTCTTTATCAATGAAGTATGTTGATATCCAAATTCTGAATCTAAATCTCGCTTCATCTTTAAATTTACAGTTGTATGTCAGCGTAGATGCAGGTACAAAGGACAG-CTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTTGTAAGTGTCTTGAATATAAGATATTTGTCAGATTCAAGCTAAGAAATTAAGGAAAATCCATCAATGGATGGCACAAAGGAATGGGAAAATAGAGTCCAAAAACACAGTTAGGGTTGTTAGCTGCACACTAGTAAACCATAGCAGCGTGTCTCAAACTGATATTTATAATATATCAGTGAGAGGAAAGCTGTAAATTCTTACCTTTACATCAGTGCTAAAAAAGATTCGGCGGCCACGGGAAACTAAATCGAAATTTGCCATGTTTTCTCTGTTTTTTCATATTTGTATGCTACCATTCAGACTGGCTAATTATTGGATTGTGCTATTCGGATTTCATTAGGATTCTTTGAGAGCTCTTAAGGAGAAGGAGCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAACGTAAGTTTTCCCCCTCCCCCTCACTTTTTTCCTTTCCCCTCCCTCTTCTCTTCTACTAGTTTATCCGATTTCAAAGTTCAGTTAAGCAATCAGGGAGGTTTGACACAGGTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAGGTTGCCTGTGAGCATGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCGCTAAGTTCAAAATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTGGTTGGTTACTTCTCTTGTTCATACCTCAGCACGTAAATTATAAGCATACCCTTCCCATTTCAATAGCGTAATCAATGTTTTTTAATCCCATGGCGCGCTACAGGTAGCTTCTG</genome_strand>
        <mrna_strand>TTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTACGCATTGTGCTTTGTCTCTGGTTGGTGAGCCTATTATGTATCCGGAACTAGATTCACTTGTAGATGATCTGTACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGAGCAGTTCGCTGTCGAGATTGAGTTATTGAAACCAATCACTCAG............................................................................................TTGTATGTCATCGTATATGCAGGTACAAAGGACAGACTTAAAAGCCATTGACAGACCACTATTTGGAGACTTCTGGGAGCCATTTCTT....................................................................................................................................................................................................................................................................................................................................................GATTCTTTGACAGCTCTTATGGAGAAGGAGCAAAGAACTGTCTATCGCTTGACACTCATTAAAGGGTGTAACACCGAAGATGTGGATGCATATTCTACCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAATGTGTCACTTATTGTGGAAC............................................................................................................GTGCGCTACATCAGAGTTGACAATGGAGAATGTCCCCTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTACAAAGAGCAGCGGAGAGTATGAGGTTGCCTGTGAGCACGTGCATTCCTGCTGTGATCTTCTGGCTCATGTCGATAAGTTCAAGATACACGGTCGATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTG.......................................................................................................GTAGCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E282241" ref_strand="+" ref_description="SGN-E282241 [cLES-4-C8]">
      <seq>aaagctgagcgtttgtctgagggtctttctcctaggcattgtgctttgtcactggttggtgagcctattatgtatccagaaataaattcacttgtagatgagctgcacaggaggcggatttcgacttttcttgttactaatgcacagttccctgacaagattaagttattgaaaccaatcacacagttgtatgtcagcgtagatgcaagtacaaaggacagcttaaaagcaattgacagaccactatttggagacttctgggagcgatttcttgattctttgagagctcttaaggagaaggagcaaagaactgtctatcgttcgacactcgttaaagggtggcacacagaagatgtggatgcatattctagcctattcagcattgggaaacccgatttcattgaaatcaaaggtgtcacttattgtggaacgtcggctacatcaaagttgacaatggagaatgtcccttggcattctgatgtgaaggaattctctgaagccttggctaaaaagagcaacggatagtatgaggctgcctgtgagcatgtgcattgctgctgtgttcttctggctaaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="132772" stop="131054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132472" g_stop="132287" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132286" i_stop="132195" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132194" g_stop="132108" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="273" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132107" i_stop="131768" i_length="340">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.752" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131767" g_stop="131610" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="431" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131609" i_stop="131502" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131501" g_stop="131354" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="579" r_length="148" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E282241" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132472" e_stop="132287"/>
          <exon e_start="132194" e_stop="132108"/>
          <exon e_start="131767" e_stop="131610"/>
          <exon e_start="131501" e_stop="131354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAGGTCTACTAGGCTTTATTCTTCTTTCTTTATCAATGAAGTATGTTGATATCCAAATTCTGAATCTAAATCTCGCTTCATCTTTAAATTTACAGTTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTTGTAAGTGTCTTGAATATAAGATATTTGTCAGATTCAAGCTAAGAAATTAAGGAAAATCCATCAATGGATGGCACAAAGGAATGGGAAAATAGAGTCCAAAAACACAGTTAGGGTTGTTAGCTGCACACTAGTAAACCATAGCAGCGTGTCTCAAACTGATATTTATAATATATCAGTGAGAGGAAAGCTGTAAATTCTTACCTTTACATCAGTGCTAAAAAAGATTCGGCGGCCACGGGAAACTAAATCGAAATTTGCCATGTTTTCTCTGTTTTTTCATATTTGTATGCTACCATTCAGACTGGCTAATTATTGGATTGTGCTATTCGGATTTCATTAGGATTCTTTGAGAGCTCTTAAGGAGAAGGAGCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAACGTAAGTTTTCCCCCTCCCCCTCACTTTTTTCCTTTCCCCTCCCTCTTCTCTTCTACTAGTTTATCCGATTTCAAAGTTCAGTTAAGCAATCAGGGAGGTTTGACACAGGTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAGGTTGCCTGTGAGCATGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTC</genome_strand>
        <mrna_strand>AAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAG............................................................................................TTGTATGTCAGCGTAGATGCAAGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTT....................................................................................................................................................................................................................................................................................................................................................GATTCTTTGAGAGCTCTTAAGGAGAAGGAGCAAAGAACTGTCTATCGTTCGACACTCGTTAAAGGGTGGCACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAAC............................................................................................................GTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGATAGTATGAGGCTGCCTGTGAGCATGTGCATTGCTGCTGTGTTCTTCTGGCTAAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E279703" ref_strand="+" ref_description="SGN-E279703 [cLER-5-J3]">
      <seq>gggaagatggatgatcctattgagattgtgaacacagctatagatttgcataccaaaatgataaaacagatgaaaggcgttccaggtgttaaagctgagcgtttgtctgagggtctttctcctaggcattgtgctttgtcactggttggtgagcctattatgtatccagaaataaattcacttgtagatgagctgcacaggaggcggatttcgacttttcttgttactaatgcacagttccctgacaagattaagttattgaaaccaatcacacagttgtatgtcagcgtagatgcaggtacaaaggacagcttaaaagcaattgacagaccactatttggagacttctgggagcgatttcttgattctttgagagctcttaaggagaaggagcaaagaactgtctatcgtttgacactcgttaaagggtggaacacagaagatgtggatgcatattctagcctattcagcattgggaaacccgatttcattgaaatcaaaggtgtcacttattgtggaacgtcggctacatcaaagttgacaatggagaatgttccttggcattctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="133300" stop="131153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133001" g_stop="132917" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132916" i_stop="132478" i_length="439">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132477" g_stop="132287" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="276" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132286" i_stop="132195" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132194" g_stop="132108" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="363" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132107" i_stop="131768" i_length="340">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131767" g_stop="131610" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="521" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="131609" i_stop="131502" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131501" g_stop="131453" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="570" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E279703" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133001" e_stop="132917"/>
          <exon e_start="132477" e_stop="132287"/>
          <exon e_start="132194" e_stop="132108"/>
          <exon e_start="131767" e_stop="131610"/>
          <exon e_start="131501" e_stop="131453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAGGTTTGTTTTCTGATACACTTGAACATATATGTTTCCGCATGAACTTGTAGGAAAGTTGAGCAATGCCACATTAGAAATAATGTGTTTGATTGAAATCATTTGGTGACTGTATTCAATATGTCTCTGTTTGGTCATTTTGTTGTGTCCGTTCAAGAAAAAGTACCTTGGGTTGAGTTGTGTTTAATTTTGATGCAATGTCCTTCCGATTTCCGAATAAAAAATGGTAAAACTGATACTGCTAACTGTTGGTTCTCCATTTTCTTACCCATTCGCATGAAATGTAGAAGTGGATACAGAATTTTCACAATTTTTTTAATCTGTCTGGATAAAATTGATGTCCTATCCACCGTACATATGCATTTTCTTTATTTTTTAAAAAATAGACGTCCTTCCACTTTCTTGCTTGTAGTGGTTAAGACCGAATATCTCACCCTTGCAGGTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAGGTCTACTAGGCTTTATTCTTCTTTCTTTATCAATGAAGTATGTTGATATCCAAATTCTGAATCTAAATCTCGCTTCATCTTTAAATTTACAGTTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTTGTAAGTGTCTTGAATATAAGATATTTGTCAGATTCAAGCTAAGAAATTAAGGAAAATCCATCAATGGATGGCACAAAGGAATGGGAAAATAGAGTCCAAAAACACAGTTAGGGTTGTTAGCTGCACACTAGTAAACCATAGCAGCGTGTCTCAAACTGATATTTATAATATATCAGTGAGAGGAAAGCTGTAAATTCTTACCTTTACATCAGTGCTAAAAAAGATTCGGCGGCCACGGGAAACTAAATCGAAATTTGCCATGTTTTCTCTGTTTTTTCATATTTGTATGCTACCATTCAGACTGGCTAATTATTGGATTGTGCTATTCGGATTTCATTAGGATTCTTTGAGAGCTCTTAAGGAGAAGGAGCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAACGTAAGTTTTCCCCCTCCCCCTCACTTTTTTCCTTTCCCCTCCCTCTTCTCTTCTACTAGTTTATCCGATTTCAAAGTTCAGTTAAGCAATCAGGGAGGTTTGACACAGGTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGAT</genome_strand>
        <mrna_strand>GGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAG............................................................................................TTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTT....................................................................................................................................................................................................................................................................................................................................................GATTCTTTGAGAGCTCTTAAGGAGAAGGAGCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAAC............................................................................................................GTCGGCTACATCAAAGTTGACAATGGAGAATGTTCCTTGGCATTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E698815" ref_strand="+" ref_description="SGN-E698815 [FA07CG03]">
      <seq>tttggagaaacagggatataaaataattggctcgcatagcggggtgaaactttgtagatggacaaaatcacaactcagagggcgcggaggttgctataagcactcattttacggcattgagagtcacaggtgcatggaggccactcctagtttagcatgtgcaaacaaatgtgttttttgttggagacatcacacaaatcctgttgggaagagctggacatggaagatggatgatcctattgagattgtgaacacagctatagatttgcataccaaaatgataaaacagatgaaaggcgttccaggtgttaaagctgagcgtttgtctgagggtctttctcctaggcattgtgctttgtcactggttggtgagcctattatgtatcccgaaataaattcacttgtagatgagctgcacaggaggcagatttcgacttttcttgttactaatgcacagtttcctgacaagattaagtcattgaaaccaatcacacagttgtatgtcagcgtagatgcaggtacaaaggacagcttaaaagcaattgacagaccactatttggagacttctgggagcgattccttgattctttgagagctcttaaggagaaggagcaaagaactgtctatcgtttgacactcgttaaagggtggaacacagaagatgtggatgcatattctagcctattcagcattggaaaacccgatttcattgaaatccaaggtgtcacttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="134673" stop="131317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134470" g_stop="134458" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134457" i_stop="134371" i_length="87">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134370" g_stop="134255" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="129" r_length="116" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134254" i_stop="133093" i_length="1162">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133092" g_stop="132917" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="305" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132916" i_stop="132478" i_length="439">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132477" g_stop="132287" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="496" r_length="191" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="132286" i_stop="132195" i_length="92">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="132194" g_stop="132108" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="583" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="132107" i_stop="131768" i_length="340">
            <donor d_prob="0.876" d_score="0.98"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="131767" g_stop="131617" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="734" r_length="151" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E698815" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134470" e_stop="134458"/>
          <exon e_start="134370" e_stop="134255"/>
          <exon e_start="133092" e_stop="132917"/>
          <exon e_start="132477" e_stop="132287"/>
          <exon e_start="132194" e_stop="132108"/>
          <exon e_start="131767" e_stop="131617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAGAAACAGGTATCGTGGTCAAATGACGAACTTTTGTTGTATCAAATTAATTAGTTGGATTTATGGTAAGGTAGTTTATTTGGTGATAAATTGCAGGGATATAAAATAATTGGCACGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTATGGCATTGAGAGTCACAGGTGATTGTTTGTTTTTCTTCCAGCACAGACGGCTATTTATAACTTTTACATTTTTACTATTGCATTCTATCTATGAGTTGTGTAGTCCTTCTTTAATCCTTGGTTGACATAATTGTATTTGAGTTTTTAAAATTCTATGTGTTCAAGTTGCAACTGTGATGAGGTCCAGTTGTTTGGAAGTTTTTTAGGCTGCTAGAATTCTTAGAGTTGATCAAGTATGCGGTGAATAAGAATTTGCATGTGCTTATCCAGAAGAAGGATCTGTTTTTAGAGGCATGTGATATGGAGTAGGAGTAGAATAGTACGGAAACTTTCCATTTTACACAATGAACAACTAGAAATGAGCTGGAATTTTTATTGTGTTCAAATAGGCCCTCAGTGGAAAATCTCCTATTACGTAGCCAATTGAACCGTCTGAAGAGATTACAAAAGTAATCAAGCTTTTATAGCTTTTTTAAGAAGAAATAAGTAAAGGGATTCATTGATGGGTATCAAGTTCAGTAAGTTCAAAAGAGAGTTAGTTCCTATACTTGTCTACTGCCTAAATAGTTATGTTGCTCGGATTCTCCAAAAATTTTGCCATTGGATGCTTCAAAATTGTACTGTTTTTGAATGATCCAACACACACCCATGTTGTAAAAGGCGATCGCCTCGTCGCCAATGGCAAGAGGCGAAGCTAACCTTCATCGCCTTTTAGCTTTGTGGCGAGGCGATCTTCAAAAGGCGACGCCATGACGACAAAAGGCTTGAGGCAAGAGGTGATAAAGGCTAGAAAGGTGTCACCTTTTGTATTTCTTAAAAAAAGGCGACCAATTTAGGGTTTTAAAAGTTAAATGGTAATTTTAGGATTTTCGACCACTCCTCTGGTGACTCCAAAGTCTAACCAATACATATTTCTTCTTTTCTTCTTCAGACTTGAGTCACTTCTACCTTTGTTTTGACTTTTGTTCTCTTTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGTATGTACTATCTATGTTTGAAGAGTCCGAGCAACATAACTTAATAGATCATGAGCTAACAAGAAAAGGTTCTATTGCATTGACCTTTTGTGCATCATTAAGTAGGCTTGATATTTATTGACTTCCTAACCATGTATGCTGATTTTAAATCTGGATTTGCATTTAACCACTGCATAGGTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAGGTTTGTTTTCTGATACACTTGAACATATATGTTTCCGCATGAACTTGTAGGAAAGTTGAGCAATGCCACATTAGAAATAATGTGTTTGATTGAAATCATTTGGTGACTGTATTCAATATGTCTCTGTTTGGTCATTTTGTTGTGTCCGTTCAAGAAAAAGTACCTTGGGTTGAGTTGTGTTTAATTTTGATGCAATGTCCTTCCGATTTCCGAATAAAAAATGGTAAAACTGATACTGCTAACTGTTGGTTCTCCATTTTCTTACCCATTCGCATGAAATGTAGAAGTGGATACAGAATTTTCACAATTTTTTTAATCTGTCTGGATAAAATTGATGTCCTATCCACCGTACATATGCATTTTCTTTATTTTTTAAAAAATAGACGTCCTTCCACTTTCTTGCTTGTAGTGGTTAAGACCGAATATCTCACCCTTGCAGGTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAGGTCTACTAGGCTTTATTCTTCTTTCTTTATCAATGAAGTATGTTGATATCCAAATTCTGAATCTAAATCTCGCTTCATCTTTAAATTTACAGTTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTTGTAAGTGTCTTGAATATAAGATATTTGTCAGATTCAAGCTAAGAAATTAAGGAAAATCCATCAATGGATGGCACAAAGGAATGGGAAAATAGAGTCCAAAAACACAGTTAGGGTTGTTAGCTGCACACTAGTAAACCATAGCAGCGTGTCTCAAACTGATATTTATAATATATCAGTGAGAGGAAAGCTGTAAATTCTTACCTTTACATCAGTGCTAAAAAAGATTCGGCGGCCACGGGAAACTAAATCGAAATTTGCCATGTTTTCTCTGTTTTTTCATATTTGTATGCTACCATTCAGACTGGCTAATTATTGGATTGTGCTATTCGGATTTCATTAGGATTCTTTGAGAGCTCTTAAGGAGAAGGAGCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATT</genome_strand>
        <mrna_strand>TTTGGAGAAACAG.......................................................................................GGATATAAAATAATTGGCTCGCATAGCGGGGTGAAACTTTGTAGATGGACAAAATCACAACTCAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTACGGCATTGAGAGTCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCCGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCAGATTTCGACTTTTCTTGTTACTAATGCACAGTTTCCTGACAAGATTAAGTCATTGAAACCAATCACACAG............................................................................................TTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTCCTT....................................................................................................................................................................................................................................................................................................................................................GATTCTTTGAGAGCTCTTAAGGAGAAGGAGCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGAAAACCCGATTTCATTGAAATCCAAGGTGTCACTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E315820" ref_strand="+" ref_description="SGN-E315820 [cTOA-26-L22]">
      <seq>tgaatggagagaaggcaatggtaactccagttattagagcgagtttggagaaacagggatataaaataattggcacgcatagcggtgtgaaactttgtagatggacaaaatcacaacttagagggcgcggaggttgctataagcactcattttatggcattgagagtcacaggtgcatggaggccactcctagtttagcatgtgcaaacaaatgtgttttttgttggagacatcacacaaatcctgttgggaagagctggacatggaagatggatgatcctattgagattgtgaacacagctatagatttgcataccaaaatgataaaacagatgaaaggcgttccaggtgttaaagctgagcgtttgtctgagggtctttctcctaggcattgtgctttgtcactggttggtgagcctattatgtatccagaaataaattcacttgtagatgagctgcacaggaggcggatttcgacttttcttgttactaatgcacagttccctgacaagattaagttattgaaaccaatcacacagttgtatgtcagcgtagatgcaggtacaaaggacagcttaaaagcaattgacagaccactattttggagacttctggggagcgatttcttgattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="134813" stop="131807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134513" g_stop="134458" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134457" i_stop="134371" i_length="87">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134370" g_stop="134255" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="172" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134254" i_stop="133093" i_length="1162">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133092" g_stop="132917" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="348" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132916" i_stop="132478" i_length="439">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132477" g_stop="132287" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="539" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="132286" i_stop="132195" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="132194" g_stop="132108" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="628" r_length="89" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E315820" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134513" e_stop="134458"/>
          <exon e_start="134370" e_stop="134255"/>
          <exon e_start="133092" e_stop="132917"/>
          <exon e_start="132477" e_stop="132287"/>
          <exon e_start="132194" e_stop="132108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGGAGAGAAGGCAATGGTAACTCCAGTTATTAGAGCGAGTTTGGAGAAACAGGTATCGTGGTCAAATGACGAACTTTTGTTGTATCAAATTAATTAGTTGGATTTATGGTAAGGTAGTTTATTTGGTGATAAATTGCAGGGATATAAAATAATTGGCACGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTATGGCATTGAGAGTCACAGGTGATTGTTTGTTTTTCTTCCAGCACAGACGGCTATTTATAACTTTTACATTTTTACTATTGCATTCTATCTATGAGTTGTGTAGTCCTTCTTTAATCCTTGGTTGACATAATTGTATTTGAGTTTTTAAAATTCTATGTGTTCAAGTTGCAACTGTGATGAGGTCCAGTTGTTTGGAAGTTTTTTAGGCTGCTAGAATTCTTAGAGTTGATCAAGTATGCGGTGAATAAGAATTTGCATGTGCTTATCCAGAAGAAGGATCTGTTTTTAGAGGCATGTGATATGGAGTAGGAGTAGAATAGTACGGAAACTTTCCATTTTACACAATGAACAACTAGAAATGAGCTGGAATTTTTATTGTGTTCAAATAGGCCCTCAGTGGAAAATCTCCTATTACGTAGCCAATTGAACCGTCTGAAGAGATTACAAAAGTAATCAAGCTTTTATAGCTTTTTTAAGAAGAAATAAGTAAAGGGATTCATTGATGGGTATCAAGTTCAGTAAGTTCAAAAGAGAGTTAGTTCCTATACTTGTCTACTGCCTAAATAGTTATGTTGCTCGGATTCTCCAAAAATTTTGCCATTGGATGCTTCAAAATTGTACTGTTTTTGAATGATCCAACACACACCCATGTTGTAAAAGGCGATCGCCTCGTCGCCAATGGCAAGAGGCGAAGCTAACCTTCATCGCCTTTTAGCTTTGTGGCGAGGCGATCTTCAAAAGGCGACGCCATGACGACAAAAGGCTTGAGGCAAGAGGTGATAAAGGCTAGAAAGGTGTCACCTTTTGTATTTCTTAAAAAAAGGCGACCAATTTAGGGTTTTAAAAGTTAAATGGTAATTTTAGGATTTTCGACCACTCCTCTGGTGACTCCAAAGTCTAACCAATACATATTTCTTCTTTTCTTCTTCAGACTTGAGTCACTTCTACCTTTGTTTTGACTTTTGTTCTCTTTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGTATGTACTATCTATGTTTGAAGAGTCCGAGCAACATAACTTAATAGATCATGAGCTAACAAGAAAAGGTTCTATTGCATTGACCTTTTGTGCATCATTAAGTAGGCTTGATATTTATTGACTTCCTAACCATGTATGCTGATTTTAAATCTGGATTTGCATTTAACCACTGCATAGGTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAGGTTTGTTTTCTGATACACTTGAACATATATGTTTCCGCATGAACTTGTAGGAAAGTTGAGCAATGCCACATTAGAAATAATGTGTTTGATTGAAATCATTTGGTGACTGTATTCAATATGTCTCTGTTTGGTCATTTTGTTGTGTCCGTTCAAGAAAAAGTACCTTGGGTTGAGTTGTGTTTAATTTTGATGCAATGTCCTTCCGATTTCCGAATAAAAAATGGTAAAACTGATACTGCTAACTGTTGGTTCTCCATTTTCTTACCCATTCGCATGAAATGTAGAAGTGGATACAGAATTTTCACAATTTTTTTAATCTGTCTGGATAAAATTGATGTCCTATCCACCGTACATATGCATTTTCTTTATTTTTTAAAAAATAGACGTCCTTCCACTTTCTTGCTTGTAGTGGTTAAGACCGAATATCTCACCCTTGCAGGTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAGGTCTACTAGGCTTTATTCTTCTTTCTTTATCAATGAAGTATGTTGATATCCAAATTCTGAATCTAAATCTCGCTTCATCTTTAAATTTACAGTTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTA-TTTGGAGACTTCT-GGGAGCGATTTCTT</genome_strand>
        <mrna_strand>TGAATGGAGAGAAGGCAATGGTAACTCCAGTTATTAGAGCGAGTTTGGAGAAACAG.......................................................................................GGATATAAAATAATTGGCACGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTATGGCATTGAGAGTCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAG............................................................................................TTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTTGGAGACTTCTGGGGAGCGATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E245024" ref_strand="+" ref_description="SGN-E245024 [cLEF-2-N22]">
      <seq>taaattgcagggatataaaataattggcacgcatagcggtgtgaaactttgtagatggacaaaatcacaacttagagggcgcggaggttgctataagcactcattttatggcattgagagtcacaggtgcatggaggccactcctagtttagcatgtgcaaacaaatgtgttttttgttggagacatcacacaaatcctgttgggaagagctggacatggaagatggatgatcctattgagattgtgaacacagctatagatttgcataccaaaatgataaaacagatgaaaggcgttccaggtgttaaagctgagcgtttgtctgagggtctttctcctaggcattgtgctttgtcactggttggtgagcctattatgtatccagaaataaattcacttgtagatgagctgcacaggaggcggatttcgacttttcttgttactaatgcacagttccctgacaagattaagttattgaaaccaatcacacagttgtatgtcagcgtagatgcaggtacaaaggacagcttaaaagcaattgacagaccactatttggagacttctgggagcgatttcttgattctttgagagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="134680" stop="131807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134380" g_stop="134255" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134254" i_stop="133093" i_length="1162">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133092" g_stop="132917" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="302" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132916" i_stop="132478" i_length="439">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132477" g_stop="132287" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="493" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132286" i_stop="132195" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132194" g_stop="132108" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="580" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E245024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134380" e_stop="134255"/>
          <exon e_start="133092" e_stop="132917"/>
          <exon e_start="132477" e_stop="132287"/>
          <exon e_start="132194" e_stop="132108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTGCAGGGATATAAAATAATTGGCACGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTATGGCATTGAGAGTCACAGGTGATTGTTTGTTTTTCTTCCAGCACAGACGGCTATTTATAACTTTTACATTTTTACTATTGCATTCTATCTATGAGTTGTGTAGTCCTTCTTTAATCCTTGGTTGACATAATTGTATTTGAGTTTTTAAAATTCTATGTGTTCAAGTTGCAACTGTGATGAGGTCCAGTTGTTTGGAAGTTTTTTAGGCTGCTAGAATTCTTAGAGTTGATCAAGTATGCGGTGAATAAGAATTTGCATGTGCTTATCCAGAAGAAGGATCTGTTTTTAGAGGCATGTGATATGGAGTAGGAGTAGAATAGTACGGAAACTTTCCATTTTACACAATGAACAACTAGAAATGAGCTGGAATTTTTATTGTGTTCAAATAGGCCCTCAGTGGAAAATCTCCTATTACGTAGCCAATTGAACCGTCTGAAGAGATTACAAAAGTAATCAAGCTTTTATAGCTTTTTTAAGAAGAAATAAGTAAAGGGATTCATTGATGGGTATCAAGTTCAGTAAGTTCAAAAGAGAGTTAGTTCCTATACTTGTCTACTGCCTAAATAGTTATGTTGCTCGGATTCTCCAAAAATTTTGCCATTGGATGCTTCAAAATTGTACTGTTTTTGAATGATCCAACACACACCCATGTTGTAAAAGGCGATCGCCTCGTCGCCAATGGCAAGAGGCGAAGCTAACCTTCATCGCCTTTTAGCTTTGTGGCGAGGCGATCTTCAAAAGGCGACGCCATGACGACAAAAGGCTTGAGGCAAGAGGTGATAAAGGCTAGAAAGGTGTCACCTTTTGTATTTCTTAAAAAAAGGCGACCAATTTAGGGTTTTAAAAGTTAAATGGTAATTTTAGGATTTTCGACCACTCCTCTGGTGACTCCAAAGTCTAACCAATACATATTTCTTCTTTTCTTCTTCAGACTTGAGTCACTTCTACCTTTGTTTTGACTTTTGTTCTCTTTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGTATGTACTATCTATGTTTGAAGAGTCCGAGCAACATAACTTAATAGATCATGAGCTAACAAGAAAAGGTTCTATTGCATTGACCTTTTGTGCATCATTAAGTAGGCTTGATATTTATTGACTTCCTAACCATGTATGCTGATTTTAAATCTGGATTTGCATTTAACCACTGCATAGGTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAGGTTTGTTTTCTGATACACTTGAACATATATGTTTCCGCATGAACTTGTAGGAAAGTTGAGCAATGCCACATTAGAAATAATGTGTTTGATTGAAATCATTTGGTGACTGTATTCAATATGTCTCTGTTTGGTCATTTTGTTGTGTCCGTTCAAGAAAAAGTACCTTGGGTTGAGTTGTGTTTAATTTTGATGCAATGTCCTTCCGATTTCCGAATAAAAAATGGTAAAACTGATACTGCTAACTGTTGGTTCTCCATTTTCTTACCCATTCGCATGAAATGTAGAAGTGGATACAGAATTTTCACAATTTTTTTAATCTGTCTGGATAAAATTGATGTCCTATCCACCGTACATATGCATTTTCTTTATTTTTTAAAAAATAGACGTCCTTCCACTTTCTTGCTTGTAGTGGTTAAGACCGAATATCTCACCCTTGCAGGTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAGGTCTACTAGGCTTTATTCTTCTTTCTTTATCAATGAAGTATGTTGATATCCAAATTCTGAATCTAAATCTCGCTTCATCTTTAAATTTACAGTTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTT</genome_strand>
        <mrna_strand>TAAATTGCAGGGATATAAAATAATTGGCACGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTATGGCATTGAGAGTCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAG............................................................................................TTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E276670" ref_strand="+" ref_description="SGN-E276670 [cLEN-14-C10]">
      <seq>aggagttaacgataagttcattaatgggaagtcgaatggtggaactgtgaatggagagaaggcaatggtaactccagttattagagcgagtttggagaaacagggatataaaataattggcacgcatagcggtgtgaaactttgtagatggacaaaatcacaacttagagggcgcggaggttgctataagcactcattttatggcattgagagtcacaggtgcatggaggccactcctagtttagcatgtgcaaacaaatgtgttttttgttggagacatcacacaaatcctgttgggaagagctggacatggaagatggatgatcctattgagattgtgaacacagctatagatttgcataccaaaatgataaaacagatgaaaggcgttccaggtgttaaagctgagcgtttgtctgagggtctttctcctaggcattgtgctttgtcactggttggtgagcctattatgtatccagaaataaattcacttgtagatgagctgcacaggaggcggatttcgacttttcttgttactaatgcacagttccctgacaagattaagttattgaaaccaatcacacagttgtatgtcagcgtagatgcaggtacaaaggacagcttaaaagcaattgacagaccactatttggagacttctgggagcgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="134860" stop="131810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134560" g_stop="134458" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134457" i_stop="134371" i_length="87">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134370" g_stop="134255" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="219" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134254" i_stop="133093" i_length="1162">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133092" g_stop="132917" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="395" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132916" i_stop="132478" i_length="439">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132477" g_stop="132287" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="586" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="132286" i_stop="132195" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="132194" g_stop="132110" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="671" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E276670" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134560" e_stop="134458"/>
          <exon e_start="134370" e_stop="134255"/>
          <exon e_start="133092" e_stop="132917"/>
          <exon e_start="132477" e_stop="132287"/>
          <exon e_start="132194" e_stop="132110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTTAACGATAAGTTCGTTAATGGGAAGTCGAATGGTGGAACTGTGAATGGAGAGAAGGCAATGGTAACTCCAGTTATTAGAGCGAGTTTGGAGAAACAGGTATCGTGGTCAAATGACGAACTTTTGTTGTATCAAATTAATTAGTTGGATTTATGGTAAGGTAGTTTATTTGGTGATAAATTGCAGGGATATAAAATAATTGGCACGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTATGGCATTGAGAGTCACAGGTGATTGTTTGTTTTTCTTCCAGCACAGACGGCTATTTATAACTTTTACATTTTTACTATTGCATTCTATCTATGAGTTGTGTAGTCCTTCTTTAATCCTTGGTTGACATAATTGTATTTGAGTTTTTAAAATTCTATGTGTTCAAGTTGCAACTGTGATGAGGTCCAGTTGTTTGGAAGTTTTTTAGGCTGCTAGAATTCTTAGAGTTGATCAAGTATGCGGTGAATAAGAATTTGCATGTGCTTATCCAGAAGAAGGATCTGTTTTTAGAGGCATGTGATATGGAGTAGGAGTAGAATAGTACGGAAACTTTCCATTTTACACAATGAACAACTAGAAATGAGCTGGAATTTTTATTGTGTTCAAATAGGCCCTCAGTGGAAAATCTCCTATTACGTAGCCAATTGAACCGTCTGAAGAGATTACAAAAGTAATCAAGCTTTTATAGCTTTTTTAAGAAGAAATAAGTAAAGGGATTCATTGATGGGTATCAAGTTCAGTAAGTTCAAAAGAGAGTTAGTTCCTATACTTGTCTACTGCCTAAATAGTTATGTTGCTCGGATTCTCCAAAAATTTTGCCATTGGATGCTTCAAAATTGTACTGTTTTTGAATGATCCAACACACACCCATGTTGTAAAAGGCGATCGCCTCGTCGCCAATGGCAAGAGGCGAAGCTAACCTTCATCGCCTTTTAGCTTTGTGGCGAGGCGATCTTCAAAAGGCGACGCCATGACGACAAAAGGCTTGAGGCAAGAGGTGATAAAGGCTAGAAAGGTGTCACCTTTTGTATTTCTTAAAAAAAGGCGACCAATTTAGGGTTTTAAAAGTTAAATGGTAATTTTAGGATTTTCGACCACTCCTCTGGTGACTCCAAAGTCTAACCAATACATATTTCTTCTTTTCTTCTTCAGACTTGAGTCACTTCTACCTTTGTTTTGACTTTTGTTCTCTTTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGTATGTACTATCTATGTTTGAAGAGTCCGAGCAACATAACTTAATAGATCATGAGCTAACAAGAAAAGGTTCTATTGCATTGACCTTTTGTGCATCATTAAGTAGGCTTGATATTTATTGACTTCCTAACCATGTATGCTGATTTTAAATCTGGATTTGCATTTAACCACTGCATAGGTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAGGTTTGTTTTCTGATACACTTGAACATATATGTTTCCGCATGAACTTGTAGGAAAGTTGAGCAATGCCACATTAGAAATAATGTGTTTGATTGAAATCATTTGGTGACTGTATTCAATATGTCTCTGTTTGGTCATTTTGTTGTGTCCGTTCAAGAAAAAGTACCTTGGGTTGAGTTGTGTTTAATTTTGATGCAATGTCCTTCCGATTTCCGAATAAAAAATGGTAAAACTGATACTGCTAACTGTTGGTTCTCCATTTTCTTACCCATTCGCATGAAATGTAGAAGTGGATACAGAATTTTCACAATTTTTTTAATCTGTCTGGATAAAATTGATGTCCTATCCACCGTACATATGCATTTTCTTTATTTTTTAAAAAATAGACGTCCTTCCACTTTCTTGCTTGTAGTGGTTAAGACCGAATATCTCACCCTTGCAGGTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAGGTCTACTAGGCTTTATTCTTCTTTCTTTATCAATGAAGTATGTTGATATCCAAATTCTGAATCTAAATCTCGCTTCATCTTTAAATTTACAGTTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTC</genome_strand>
        <mrna_strand>AGGAGTTAACGATAAGTTCATTAATGGGAAGTCGAATGGTGGAACTGTGAATGGAGAGAAGGCAATGGTAACTCCAGTTATTAGAGCGAGTTTGGAGAAACAG.......................................................................................GGATATAAAATAATTGGCACGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTATGGCATTGAGAGTCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAG............................................................................................TTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E719161" ref_strand="+" ref_description="SGN-E719161 [FC06DG06]">
      <seq>ggaagctttggcactaaacccatcagcattcttccccgaaaaaagttccttcaaaaaccctatctgataaacccatctaatccagaaggcaattgcaagctctcaacaaggagaactcgttttttctcttattcaatggagctagaggatagcattttaaacttctctgatgaagacgagagctttgaggatgacgaagatgttaaaatgaatgatattgaggaaggagaactagttgagaagatctccaagactggattagaggaaactggtggtgtatgtgccagctctgaaaatcctcttccaggtaaaaaaaatcggagacggaggaggaacaagagaaagaacaaaagcaagagagtttcttcaggtccaatcacagacattaacagatttgttttggatgtcggaagacgcttgaaagagaggaaatcttatcttatatggaatgctgttggttgtctcggcctatctgctttgagtgatcttgttaaagagatgcctcctggtgaagcctttttcactcctttcagtctcatggacctttcttccaagatagcttctggcggaacttctttgtggtgtctatttggattgattccaatgtttttgcctgtctttgttgttttaccccatggtggatgcaattcagacttgtggtggccagaagactgctgatggcaggcgtttccgaacaggtggtggaatattgtggagcatccttaaagtacgagatccaaatgcatacaaagagataatgaagaaagggaaggagtttgagaagcagtttaggcaggctaatctcaagcaagaaccgctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="136484" stop="140513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136783" g_stop="136901" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136902" i_stop="137359" i_length="458">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137360" g_stop="137632" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="392" r_length="273" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137633" i_stop="138033" i_length="401">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138034" g_stop="138139" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="498" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138140" i_stop="138849" i_length="710">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="138850" g_stop="138988" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="637" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="138989" i_stop="139356" i_length="368">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139357" g_stop="139500" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="781" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="139501" i_stop="140172" i_length="672">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140173" g_stop="140213" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="822" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E719161" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136783" e_stop="136901"/>
          <exon e_start="137360" e_stop="137632"/>
          <exon e_start="138034" e_stop="138139"/>
          <exon e_start="138850" e_stop="138988"/>
          <exon e_start="139357" e_stop="139500"/>
          <exon e_start="140173" e_stop="140213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCTTTGGCACTAAACCCATCAGCATTCTTCCCCGAAAAAAGTTCCTTCAAAAACCCTACCTGTAAAACCCATCTAACCCAGAAGGTAATTGCAAGCTCTCAACAAGGAGAACTCGGTAAGGGTTCGATTCGTTTTCGTCTTTTTTTACTTTCATCAAATCTCTGTATTAAACCTAGAATCTGTATCTTGCCGTCTGTTGCATTTTTCAAACCAAATTGATATTCCCATTTATAAAAATTCATTTTTTCATCCATGTTATATATATTGAATTTCTACGGTATAAATCGAATGGGTAGGTTGAGAACTGAGATGCTTTGTTACTGATTGGAGAATCAATTGAGGCTTGCTCAAGTGGTTGAGCACCTCCACCATCCCTAGGTAATTGAGGGTTCGAGTTACTTGGGAGAGTAAGTTAGAACACTGTTGATACTCCGTCAGTGGAGTGGGGAAACAAATCAGTTAGTCATGTTATAGAGATATTTATGACCTGTAACTCTTTGCTGTAAAAGGTAGTGTCTTTGCTGTGATTCTTTTGGTGATGTAGAGGAATAATATTTCATTAATCTCGTGCAGGTTTTTCTCTAATTCAATGGAGCTAGAGGATAGCATTTTAAACTTCTCTGATGAAGACGAGAGCTTTGAGGATGATGAAGATGTTAAAATGAATGATATTGAGGAAGGAGAACTAGTTGAGAAGATCTCCAAGACTGGATTAGAGGAAACTGGTGATGTATGTGCCAGCTCTGAAAATCCTCTTCCAGGTAAAAAAAATCGGAGACGGAGGAAGAACAAGGGAAAGAACAAAAGCAAGAGAGTTTCTTCAGGTCCAATCACAGACATTAACAGGTTTGTTATGCTAATCATAGTTGTTATATCATGATTACCCAGTGCATACTATTTTTATTTCTATGGTGAAAGCAGTATTGTGCGTGGACTCGGGGCATACAGTTGGATATAGTTAACAAGATGATTGCCTTAGTGTAATCAAGGGAAGATGACTGATGCATAGGTTTATTTGCTTTGTTAATTTTACTATATGTCCCAGTTAATATTCGTTCCTTTGGTTTGCGAAGTGATCTCATGGAATTTTGTATTGCTATCTACAACTCTGTCGCTGTTGTGTCAAAGGTTAACACTTTGGTCTAAGTTGCTTCAATTTGTATACCCTTGTCTGTTACACGAATTTGCATCTTTTTCTCTGTTGTATTAGGCTCTGAATTTTCTGTCTTTGAAATTTTTGACTTTAGATTTGTTTTGGATGTCGGAAGACGCTTGAAAGAGAGGAAATCTTATCTTATATGGAATGCTGTTGGTTGTCTCGGCCTATCTGCTTTGAGTGATCTTGTTAAAGAGGTATGCCTTTTGTTCTGCACGCTTGTTTTCTTGAAGGATGATTTTTGCTTGTCAAATTCCTTGATGGCTTTACTGATAAGCTTAATTTTGTATTTAGACAGTAGTGTTGGCATAACTTCACCAAAATGCCCCCAACCCAAATAAACTTAATGAATAAGTTGGTCTTTTTGTAGCACAGACCCACAGATTCGAATTTTTGAGTTGGTAAGGTCATAGATGACAAATCAATTTCACTTTTTAAAGTTACCCTTATCTAAGAAAAAAACAAAAAACAAATCAACTTCACTTCTGTTTGGAGTAATACTTGTGTTTATCAGGATAACTATCTTATGAATAGCAACATTACTATTTATTTCCAATGCAAATGATTTTTACTGTCTTGGAAGGCATTGCATTCTCGATGGGGAGCGTGAAATTTAAACCAAATACCTTTATTAGCCTCAGAACCACTTGCCATCCCCTAGTTCATATTCGCTAAAGCTCATGGGCCTTCCATCTCCATGTTGGTGCCAATAACATTGATCTTCTCTTTATTTTCTTGTTACCAGAGATTGGGCATTCTAGAATTATTTACCCCTTGGTTTTGGCTAGATTGAGAATTATTCAGTGATTGCTAAGAGGTAAAGGATGGGCCTAACTCTTAACACGATTTCTTTAAGGTCTAATATTTTTTGTAGTTTCTGATGCTCAATGTTGTAATACACTCACAGATGCCTCCTGGTGAAGCCTTTTTCACTCCTTTCAGTCTCATGGACCTTTCTTCCAAGATAGCTTCTGCCGGAACTACTTTGTGGTGTCTATTTGGATTGATTCCAATGTTTTTGCCTGTCTTTGTTGTTTTACCCCATGGTATGCACATAACAATGCAATATGCTGAAATTTTGCATCTTTTTCCTGTTTCTTTTTTTCCTTTTTGTTTTTTTTTTCTTATGGGAATCAGAGGGTTGATTGAGAAGTAGAGAAAGTATTTTAGAAAGTAAGTGGGAACAATAGGAGCTCTGAGTTTAAGTAGTGAAAATTATTTGTGTATTAATTTGACAAATAATGGGCATTTTGTGTTTCCCCCAAGTTAGCTAGAACCTCTTGCTTGCTGCCTCTCCTCTTCTTCTCTTTTTCCCTTTTCCTCGAGGGAGATATTGCTTGTTTGAACCCATTTTATATGATTTTTGAGTTCTCCAATTATGAGTCAGCTGATGATGATGTTGTAAACTTTAAAGGTGGATGCAATTCAGACTTGTGGCGGCCAGAAGACTGCTGATGGCAGGCGTTTCCGAACAGGTGGTGGAATATTGTGGAGCATCCTTAAAGTACGAGATCCAAATGCATACAAAGAGATAATGAAGAAAGGGAAGGAGTTTGAGGTGGGTCATTATTCTTACGCATTATTAGTACTTATTTATCCCCAGTGCATCTGGCAGTTTTATTGCTCAACCTGGAAACTAGGTAGTTACCATCATTGATCATGAATTTTCCATTGTTGGGATCAGTAAGCATGAAGGTAATTGACAATGCTGAAGGTTTTTGTTCTATCTCAAAACAAACGAGAAAAATTAAAGCAGGTTAACCTTAAAAAAAGGAAAGAACCTTTAGTGAAGGCCTTATGGAGGTGCTTTTGTATATAATTTATTTTGACTGTGCATTGCAGTATTCATTGCAAGACAAATATAATGCTATTACCCACGTATATTTTCTCATTGCTCCGTTGAGATGCCCTAAATTTTGCGCTGTCTATTTGGATGTGTTAAAATTTTGAATTTCAAGTGATTATCTTACTGTGGATCATTTTCTCAAAATCAAAATGCATATTATTGGGTAAAATCCCCTATCCCTTGGGTAGCCACGGTCATTTCTAGTTGCGAGGACAATACTCTCCCATCAAAATTGTGAATCTCTGTTTGCTGATTGTTATTTTTCTTAAGACTAATTCCAACTTAGTATGCTGTGTATCCTAAACAATTGCATTCATAATTTGAACTGTTGATCTGCTAGTTGCTATTTTCCTTCCAGTGCTCATTAAGAACTTAATCTTGCAGAAGCAGTTTAGGCAGGCTAATCTCAAGCAAGAACCCCTCCA</genome_strand>
        <mrna_strand>GGAAGCTTTGGCACTAAACCCATCAGCATTCTTCCCCGAAAAAAGTTCCTTCAAAAACCCTATCTGATAAACCCATCTAATCCAGAAGGCAATTGCAAGCTCTCAACAAGGAGAACTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTCTCTTATTCAATGGAGCTAGAGGATAGCATTTTAAACTTCTCTGATGAAGACGAGAGCTTTGAGGATGACGAAGATGTTAAAATGAATGATATTGAGGAAGGAGAACTAGTTGAGAAGATCTCCAAGACTGGATTAGAGGAAACTGGTGGTGTATGTGCCAGCTCTGAAAATCCTCTTCCAGGTAAAAAAAATCGGAGACGGAGGAGGAACAAGAGAAAGAACAAAAGCAAGAGAGTTTCTTCAGGTCCAATCACAGACATTAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTTTTGGATGTCGGAAGACGCTTGAAAGAGAGGAAATCTTATCTTATATGGAATGCTGTTGGTTGTCTCGGCCTATCTGCTTTGAGTGATCTTGTTAAAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTCCTGGTGAAGCCTTTTTCACTCCTTTCAGTCTCATGGACCTTTCTTCCAAGATAGCTTCTGGCGGAACTTCTTTGTGGTGTCTATTTGGATTGATTCCAATGTTTTTGCCTGTCTTTGTTGTTTTACCCCATG................................................................................................................................................................................................................................................................................................................................................................................GTGGATGCAATTCAGACTTGTGGTGGCCAGAAGACTGCTGATGGCAGGCGTTTCCGAACAGGTGGTGGAATATTGTGGAGCATCCTTAAAGTACGAGATCCAAATGCATACAAAGAGATAATGAAGAAAGGGAAGGAGTTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGTTTAGGCAGGCTAATCTCAAGCAAGAACCGCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E328788" ref_strand="+" ref_description="SGN-E328788 [cTOC-23-J22]">
      <seq>aaaaagttccttcaaaaaccctacctgtaaaacccatctaacccagaaggtaattgcaagctctcaacaaggagaactcggtttttctctaattcaatggagctagaggatagcattttaaacttctctgatgaagacgagagctttgaggatgatgaagatgttaaaatgaatgatattgaggaaggagaactagttgagaagatctccaagactggattagaggaaactggtgatgtatgtgccagctctgaaaatcctcttccaggtaaaaaaaatcggagacggaggaagaacaagggaaagaacaaaagcaagagagtttcttcaggtccaatcacagacattaacagatttgttttggatgtcggaagacgcttgaaagagaggaaatcttatcttatatggaatgctgttggttgtctcggcctatctgctttgagtgatcttgttaaagaggtggatgcaattcagacttgtggcggccagaagactgctgatggcaggcgtttccgaacaggtggtggaatattgtggagcatccttaaagtacgagatccaaatgcatacaaagagataatgaagaaagggaaggagtttgagaagcagtttaggcaggctaatctcaagcaagaacccctccaaacaaagaagcttctttggagagatctagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="136522" stop="140545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136822" g_stop="136901" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136902" i_stop="137359" i_length="458">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137360" g_stop="137632" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="353" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137633" i_stop="138033" i_length="401">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138034" g_stop="138139" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="459" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138140" i_stop="139356" i_length="1217">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="139357" g_stop="139500" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="603" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="139501" i_stop="140172" i_length="672">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140173" g_stop="140245" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="675" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E328788" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136822" e_stop="136901"/>
          <exon e_start="137360" e_stop="137632"/>
          <exon e_start="138034" e_stop="138139"/>
          <exon e_start="139357" e_stop="139500"/>
          <exon e_start="140173" e_stop="140245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTCCTTCAAAAACCCTACCTGTAAAACCCATCTAACCCAGAAGGTAATTGCAAGCTCTCAACAAGGAGAACTCGGTAAGGGTTCGATTCGTTTTCGTCTTTTTTTACTTTCATCAAATCTCTGTATTAAACCTAGAATCTGTATCTTGCCGTCTGTTGCATTTTTCAAACCAAATTGATATTCCCATTTATAAAAATTCATTTTTTCATCCATGTTATATATATTGAATTTCTACGGTATAAATCGAATGGGTAGGTTGAGAACTGAGATGCTTTGTTACTGATTGGAGAATCAATTGAGGCTTGCTCAAGTGGTTGAGCACCTCCACCATCCCTAGGTAATTGAGGGTTCGAGTTACTTGGGAGAGTAAGTTAGAACACTGTTGATACTCCGTCAGTGGAGTGGGGAAACAAATCAGTTAGTCATGTTATAGAGATATTTATGACCTGTAACTCTTTGCTGTAAAAGGTAGTGTCTTTGCTGTGATTCTTTTGGTGATGTAGAGGAATAATATTTCATTAATCTCGTGCAGGTTTTTCTCTAATTCAATGGAGCTAGAGGATAGCATTTTAAACTTCTCTGATGAAGACGAGAGCTTTGAGGATGATGAAGATGTTAAAATGAATGATATTGAGGAAGGAGAACTAGTTGAGAAGATCTCCAAGACTGGATTAGAGGAAACTGGTGATGTATGTGCCAGCTCTGAAAATCCTCTTCCAGGTAAAAAAAATCGGAGACGGAGGAAGAACAAGGGAAAGAACAAAAGCAAGAGAGTTTCTTCAGGTCCAATCACAGACATTAACAGGTTTGTTATGCTAATCATAGTTGTTATATCATGATTACCCAGTGCATACTATTTTTATTTCTATGGTGAAAGCAGTATTGTGCGTGGACTCGGGGCATACAGTTGGATATAGTTAACAAGATGATTGCCTTAGTGTAATCAAGGGAAGATGACTGATGCATAGGTTTATTTGCTTTGTTAATTTTACTATATGTCCCAGTTAATATTCGTTCCTTTGGTTTGCGAAGTGATCTCATGGAATTTTGTATTGCTATCTACAACTCTGTCGCTGTTGTGTCAAAGGTTAACACTTTGGTCTAAGTTGCTTCAATTTGTATACCCTTGTCTGTTACACGAATTTGCATCTTTTTCTCTGTTGTATTAGGCTCTGAATTTTCTGTCTTTGAAATTTTTGACTTTAGATTTGTTTTGGATGTCGGAAGACGCTTGAAAGAGAGGAAATCTTATCTTATATGGAATGCTGTTGGTTGTCTCGGCCTATCTGCTTTGAGTGATCTTGTTAAAGAGGTATGCCTTTTGTTCTGCACGCTTGTTTTCTTGAAGGATGATTTTTGCTTGTCAAATTCCTTGATGGCTTTACTGATAAGCTTAATTTTGTATTTAGACAGTAGTGTTGGCATAACTTCACCAAAATGCCCCCAACCCAAATAAACTTAATGAATAAGTTGGTCTTTTTGTAGCACAGACCCACAGATTCGAATTTTTGAGTTGGTAAGGTCATAGATGACAAATCAATTTCACTTTTTAAAGTTACCCTTATCTAAGAAAAAAACAAAAAACAAATCAACTTCACTTCTGTTTGGAGTAATACTTGTGTTTATCAGGATAACTATCTTATGAATAGCAACATTACTATTTATTTCCAATGCAAATGATTTTTACTGTCTTGGAAGGCATTGCATTCTCGATGGGGAGCGTGAAATTTAAACCAAATACCTTTATTAGCCTCAGAACCACTTGCCATCCCCTAGTTCATATTCGCTAAAGCTCATGGGCCTTCCATCTCCATGTTGGTGCCAATAACATTGATCTTCTCTTTATTTTCTTGTTACCAGAGATTGGGCATTCTAGAATTATTTACCCCTTGGTTTTGGCTAGATTGAGAATTATTCAGTGATTGCTAAGAGGTAAAGGATGGGCCTAACTCTTAACACGATTTCTTTAAGGTCTAATATTTTTTGTAGTTTCTGATGCTCAATGTTGTAATACACTCACAGATGCCTCCTGGTGAAGCCTTTTTCACTCCTTTCAGTCTCATGGACCTTTCTTCCAAGATAGCTTCTGCCGGAACTACTTTGTGGTGTCTATTTGGATTGATTCCAATGTTTTTGCCTGTCTTTGTTGTTTTACCCCATGGTATGCACATAACAATGCAATATGCTGAAATTTTGCATCTTTTTCCTGTTTCTTTTTTTCCTTTTTGTTTTTTTTTTCTTATGGGAATCAGAGGGTTGATTGAGAAGTAGAGAAAGTATTTTAGAAAGTAAGTGGGAACAATAGGAGCTCTGAGTTTAAGTAGTGAAAATTATTTGTGTATTAATTTGACAAATAATGGGCATTTTGTGTTTCCCCCAAGTTAGCTAGAACCTCTTGCTTGCTGCCTCTCCTCTTCTTCTCTTTTTCCCTTTTCCTCGAGGGAGATATTGCTTGTTTGAACCCATTTTATATGATTTTTGAGTTCTCCAATTATGAGTCAGCTGATGATGATGTTGTAAACTTTAAAGGTGGATGCAATTCAGACTTGTGGCGGCCAGAAGACTGCTGATGGCAGGCGTTTCCGAACAGGTGGTGGAATATTGTGGAGCATCCTTAAAGTACGAGATCCAAATGCATACAAAGAGATAATGAAGAAAGGGAAGGAGTTTGAGGTGGGTCATTATTCTTACGCATTATTAGTACTTATTTATCCCCAGTGCATCTGGCAGTTTTATTGCTCAACCTGGAAACTAGGTAGTTACCATCATTGATCATGAATTTTCCATTGTTGGGATCAGTAAGCATGAAGGTAATTGACAATGCTGAAGGTTTTTGTTCTATCTCAAAACAAACGAGAAAAATTAAAGCAGGTTAACCTTAAAAAAAGGAAAGAACCTTTAGTGAAGGCCTTATGGAGGTGCTTTTGTATATAATTTATTTTGACTGTGCATTGCAGTATTCATTGCAAGACAAATATAATGCTATTACCCACGTATATTTTCTCATTGCTCCGTTGAGATGCCCTAAATTTTGCGCTGTCTATTTGGATGTGTTAAAATTTTGAATTTCAAGTGATTATCTTACTGTGGATCATTTTCTCAAAATCAAAATGCATATTATTGGGTAAAATCCCCTATCCCTTGGGTAGCCACGGTCATTTCTAGTTGCGAGGACAATACTCTCCCATCAAAATTGTGAATCTCTGTTTGCTGATTGTTATTTTTCTTAAGACTAATTCCAACTTAGTATGCTGTGTATCCTAAACAATTGCATTCATAATTTGAACTGTTGATCTGCTAGTTGCTATTTTCCTTCCAGTGCTCATTAAGAACTTAATCTTGCAGAAGCAGTTTAGGCAGGCTAATCTCAAGCAAGAACCCCTCCAAAACAAAGAAGCTTCTTTGGAGAGATCTAGTC</genome_strand>
        <mrna_strand>AAAAAGTTCCTTCAAAAACCCTACCTGTAAAACCCATCTAACCCAGAAGGTAATTGCAAGCTCTCAACAAGGAGAACTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTCTCTAATTCAATGGAGCTAGAGGATAGCATTTTAAACTTCTCTGATGAAGACGAGAGCTTTGAGGATGATGAAGATGTTAAAATGAATGATATTGAGGAAGGAGAACTAGTTGAGAAGATCTCCAAGACTGGATTAGAGGAAACTGGTGATGTATGTGCCAGCTCTGAAAATCCTCTTCCAGGTAAAAAAAATCGGAGACGGAGGAAGAACAAGGGAAAGAACAAAAGCAAGAGAGTTTCTTCAGGTCCAATCACAGACATTAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTTTTGGATGTCGGAAGACGCTTGAAAGAGAGGAAATCTTATCTTATATGGAATGCTGTTGGTTGTCTCGGCCTATCTGCTTTGAGTGATCTTGTTAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGCAATTCAGACTTGTGGCGGCCAGAAGACTGCTGATGGCAGGCGTTTCCGAACAGGTGGTGGAATATTGTGGAGCATCCTTAAAGTACGAGATCCAAATGCATACAAAGAGATAATGAAGAAAGGGAAGGAGTTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGTTTAGGCAGGCTAATCTCAAGCAAGAACCCCTCC-AAACAAAGAAGCTTCTTTGGAGAGATCTAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E315923" ref_strand="+" ref_description="SGN-E315923 [cTOA-26-F23]">
      <seq>aaagttccttcaaaaaccctacctgtaaaacccatctaacccagaaggtaattgcaagctctcaacaaggagaactcggtttttctctaattcaatggagctagaggatagcattttaaacttctctgatgaagacgagagctttgaggatgatgaagatgttaaaatgaatgatattgaggaaggagaactagttgagaagatctccaagactggattagaggaaactggtgatgtatgtgccagctctgaaaatcctcttccaggtaaaaaaaatcggagacggaggaagaacaagggaaagaacaaaagcaagagagtttcttcaggtccaatcacagacattaacagatttgttttggatgtcggaagacgcttgaaagagaggaaatcttatcttatatggaatgctgttggttgtctcggcctatctgctttgagtgatcttgttaaagaggtggatgcaattcagacttgtggcggccagaagactgctgatggcaggcgtttccgaacaggtggtggaatattgtggagcatccttaaagtacgagatccaaatgcatacaaagagataatgaagaaagggaaggagtttgagaagcagtttaggcaggctaatctcaagcaagaacccctccaaaacaaagaagcttctcttggagagatctagtcagacaataggagacgagattacagccagttgttcagatgttttgctgcagcaagaacctgttgaacagtctaatagtggagccaaacgtgcatctgttcatgatagaataaggatgcctgtcacgtatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="136524" stop="140679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136824" g_stop="136901" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136902" i_stop="137359" i_length="458">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137360" g_stop="137632" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="351" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137633" i_stop="138033" i_length="401">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138034" g_stop="138139" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="457" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138140" i_stop="139356" i_length="1217">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="139357" g_stop="139500" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="601" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="139501" i_stop="140172" i_length="672">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140173" g_stop="140379" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="809" r_length="208" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-E315923" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136824" e_stop="136901"/>
          <exon e_start="137360" e_stop="137632"/>
          <exon e_start="138034" e_stop="138139"/>
          <exon e_start="139357" e_stop="139500"/>
          <exon e_start="140173" e_stop="140379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCCTTCAAAAACCCTACCTGTAAAACCCATCTAACCCAGAAGGTAATTGCAAGCTCTCAACAAGGAGAACTCGGTAAGGGTTCGATTCGTTTTCGTCTTTTTTTACTTTCATCAAATCTCTGTATTAAACCTAGAATCTGTATCTTGCCGTCTGTTGCATTTTTCAAACCAAATTGATATTCCCATTTATAAAAATTCATTTTTTCATCCATGTTATATATATTGAATTTCTACGGTATAAATCGAATGGGTAGGTTGAGAACTGAGATGCTTTGTTACTGATTGGAGAATCAATTGAGGCTTGCTCAAGTGGTTGAGCACCTCCACCATCCCTAGGTAATTGAGGGTTCGAGTTACTTGGGAGAGTAAGTTAGAACACTGTTGATACTCCGTCAGTGGAGTGGGGAAACAAATCAGTTAGTCATGTTATAGAGATATTTATGACCTGTAACTCTTTGCTGTAAAAGGTAGTGTCTTTGCTGTGATTCTTTTGGTGATGTAGAGGAATAATATTTCATTAATCTCGTGCAGGTTTTTCTCTAATTCAATGGAGCTAGAGGATAGCATTTTAAACTTCTCTGATGAAGACGAGAGCTTTGAGGATGATGAAGATGTTAAAATGAATGATATTGAGGAAGGAGAACTAGTTGAGAAGATCTCCAAGACTGGATTAGAGGAAACTGGTGATGTATGTGCCAGCTCTGAAAATCCTCTTCCAGGTAAAAAAAATCGGAGACGGAGGAAGAACAAGGGAAAGAACAAAAGCAAGAGAGTTTCTTCAGGTCCAATCACAGACATTAACAGGTTTGTTATGCTAATCATAGTTGTTATATCATGATTACCCAGTGCATACTATTTTTATTTCTATGGTGAAAGCAGTATTGTGCGTGGACTCGGGGCATACAGTTGGATATAGTTAACAAGATGATTGCCTTAGTGTAATCAAGGGAAGATGACTGATGCATAGGTTTATTTGCTTTGTTAATTTTACTATATGTCCCAGTTAATATTCGTTCCTTTGGTTTGCGAAGTGATCTCATGGAATTTTGTATTGCTATCTACAACTCTGTCGCTGTTGTGTCAAAGGTTAACACTTTGGTCTAAGTTGCTTCAATTTGTATACCCTTGTCTGTTACACGAATTTGCATCTTTTTCTCTGTTGTATTAGGCTCTGAATTTTCTGTCTTTGAAATTTTTGACTTTAGATTTGTTTTGGATGTCGGAAGACGCTTGAAAGAGAGGAAATCTTATCTTATATGGAATGCTGTTGGTTGTCTCGGCCTATCTGCTTTGAGTGATCTTGTTAAAGAGGTATGCCTTTTGTTCTGCACGCTTGTTTTCTTGAAGGATGATTTTTGCTTGTCAAATTCCTTGATGGCTTTACTGATAAGCTTAATTTTGTATTTAGACAGTAGTGTTGGCATAACTTCACCAAAATGCCCCCAACCCAAATAAACTTAATGAATAAGTTGGTCTTTTTGTAGCACAGACCCACAGATTCGAATTTTTGAGTTGGTAAGGTCATAGATGACAAATCAATTTCACTTTTTAAAGTTACCCTTATCTAAGAAAAAAACAAAAAACAAATCAACTTCACTTCTGTTTGGAGTAATACTTGTGTTTATCAGGATAACTATCTTATGAATAGCAACATTACTATTTATTTCCAATGCAAATGATTTTTACTGTCTTGGAAGGCATTGCATTCTCGATGGGGAGCGTGAAATTTAAACCAAATACCTTTATTAGCCTCAGAACCACTTGCCATCCCCTAGTTCATATTCGCTAAAGCTCATGGGCCTTCCATCTCCATGTTGGTGCCAATAACATTGATCTTCTCTTTATTTTCTTGTTACCAGAGATTGGGCATTCTAGAATTATTTACCCCTTGGTTTTGGCTAGATTGAGAATTATTCAGTGATTGCTAAGAGGTAAAGGATGGGCCTAACTCTTAACACGATTTCTTTAAGGTCTAATATTTTTTGTAGTTTCTGATGCTCAATGTTGTAATACACTCACAGATGCCTCCTGGTGAAGCCTTTTTCACTCCTTTCAGTCTCATGGACCTTTCTTCCAAGATAGCTTCTGCCGGAACTACTTTGTGGTGTCTATTTGGATTGATTCCAATGTTTTTGCCTGTCTTTGTTGTTTTACCCCATGGTATGCACATAACAATGCAATATGCTGAAATTTTGCATCTTTTTCCTGTTTCTTTTTTTCCTTTTTGTTTTTTTTTTCTTATGGGAATCAGAGGGTTGATTGAGAAGTAGAGAAAGTATTTTAGAAAGTAAGTGGGAACAATAGGAGCTCTGAGTTTAAGTAGTGAAAATTATTTGTGTATTAATTTGACAAATAATGGGCATTTTGTGTTTCCCCCAAGTTAGCTAGAACCTCTTGCTTGCTGCCTCTCCTCTTCTTCTCTTTTTCCCTTTTCCTCGAGGGAGATATTGCTTGTTTGAACCCATTTTATATGATTTTTGAGTTCTCCAATTATGAGTCAGCTGATGATGATGTTGTAAACTTTAAAGGTGGATGCAATTCAGACTTGTGGCGGCCAGAAGACTGCTGATGGCAGGCGTTTCCGAACAGGTGGTGGAATATTGTGGAGCATCCTTAAAGTACGAGATCCAAATGCATACAAAGAGATAATGAAGAAAGGGAAGGAGTTTGAGGTGGGTCATTATTCTTACGCATTATTAGTACTTATTTATCCCCAGTGCATCTGGCAGTTTTATTGCTCAACCTGGAAACTAGGTAGTTACCATCATTGATCATGAATTTTCCATTGTTGGGATCAGTAAGCATGAAGGTAATTGACAATGCTGAAGGTTTTTGTTCTATCTCAAAACAAACGAGAAAAATTAAAGCAGGTTAACCTTAAAAAAAGGAAAGAACCTTTAGTGAAGGCCTTATGGAGGTGCTTTTGTATATAATTTATTTTGACTGTGCATTGCAGTATTCATTGCAAGACAAATATAATGCTATTACCCACGTATATTTTCTCATTGCTCCGTTGAGATGCCCTAAATTTTGCGCTGTCTATTTGGATGTGTTAAAATTTTGAATTTCAAGTGATTATCTTACTGTGGATCATTTTCTCAAAATCAAAATGCATATTATTGGGTAAAATCCCCTATCCCTTGGGTAGCCACGGTCATTTCTAGTTGCGAGGACAATACTCTCCCATCAAAATTGTGAATCTCTGTTTGCTGATTGTTATTTTTCTTAAGACTAATTCCAACTTAGTATGCTGTGTATCCTAAACAATTGCATTCATAATTTGAACTGTTGATCTGCTAGTTGCTATTTTCCTTCCAGTGCTCATTAAGAACTTAATCTTGCAGAAGCAGTTTAGGCAGGCTAATCTCAAGCAAGAACCCCTCCAAAACAAAGAAGCTTCT-TTGGAGAGATCTAGTCAGACAATAGGAGACGAGATTACAGCCAGTTGTTCAGATGTTTTGCTGCAGCAAGAACCTGTTGAACAGTCTAATAGTGGAGCCAAACGTGCATCTGTTCATGATAGAATAAGGATGCCTGTCACGTATGATGAT</genome_strand>
        <mrna_strand>AAAGTTCCTTCAAAAACCCTACCTGTAAAACCCATCTAACCCAGAAGGTAATTGCAAGCTCTCAACAAGGAGAACTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTCTCTAATTCAATGGAGCTAGAGGATAGCATTTTAAACTTCTCTGATGAAGACGAGAGCTTTGAGGATGATGAAGATGTTAAAATGAATGATATTGAGGAAGGAGAACTAGTTGAGAAGATCTCCAAGACTGGATTAGAGGAAACTGGTGATGTATGTGCCAGCTCTGAAAATCCTCTTCCAGGTAAAAAAAATCGGAGACGGAGGAAGAACAAGGGAAAGAACAAAAGCAAGAGAGTTTCTTCAGGTCCAATCACAGACATTAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTTTTGGATGTCGGAAGACGCTTGAAAGAGAGGAAATCTTATCTTATATGGAATGCTGTTGGTTGTCTCGGCCTATCTGCTTTGAGTGATCTTGTTAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGCAATTCAGACTTGTGGCGGCCAGAAGACTGCTGATGGCAGGCGTTTCCGAACAGGTGGTGGAATATTGTGGAGCATCCTTAAAGTACGAGATCCAAATGCATACAAAGAGATAATGAAGAAAGGGAAGGAGTTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGTTTAGGCAGGCTAATCTCAAGCAAGAACCCCTCCAAAACAAAGAAGCTTCTCTTGGAGAGATCTAGTCAGACAATAGGAGACGAGATTACAGCCAGTTGTTCAGATGTTTTGCTGCAGCAAGAACCTGTTGAACAGTCTAATAGTGGAGCCAAACGTGCATCTGTTCATGATAGAATAAGGATGCCTGTCACGTATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E373197" ref_strand="-" ref_description="SGN-E373197 [TUS-32-M15]">
      <seq>tttagttggcttgggtattgaatggtccaacattcggaatgtaatggatatgaaagccatcaatggaggatttgcagcagctcttgcacagcagaaggtgtgggtgatgaatgttattcctgtacatgcaccaaacacccttcccgtagtctttgaaagaggacttattggcgtgtaccacgattggtgtgaggcttttggtacttatccaagatcatacgaccttctacatgcagatcatctcttctcaaggcttaagaacaggtgcaagcatcccattgtgattgtggttgagatggaccgtatattacggcctggtggctggggaatcatacgtgacaaggtcgaaatacttgatccattagagaaaatattgagaagcttgcactgggagatacgaatgacttttgccaaagataaggaaggcatcctttgtgctcagaagacaatgtggagaccttgatgaatgcttagaagcaagtcatttgattatttggactacagattccagtcattttcctgctggttatctatacacagtgccattcttgccaacaattgtgttccctgttcacatattgcaaaagaaattgtcgtggatccagaatttagacgttgtgagtattgagttcggaaatgtatacaaagatttaattcattgttggatcatctttgaaaggaaagtattttccaacaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="143642" stop="141813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143342" g_stop="143274" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143273" i_stop="143156" i_length="118">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143155" g_stop="142961" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="264" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142960" i_stop="142546" i_length="415">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142545" g_stop="142114" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="696" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="719"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E373197" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373197" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="143342" e_stop="143274"/>
          <exon e_start="143155" e_stop="142961"/>
          <exon e_start="142545" e_stop="142114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTGGCTTGGGTATTGAATGGTCCAACATTCGGAATGTAATGGATATGAAAGCCATCAATGGAGGGTAAGCCCCTAGCTTTGGTTAATCTGATGTTAGAGGCTCAAACATTAAAATGTTATTGGCTCTCCCTCTTCTTTTAATTGTAATATTGTGCCTCGGCAACTGAGAAAAATATACACAGATTTGCAGCAGCTCTTGCACAGCAGAAGGTGTGGGTGATGAATGTTATTCCTGTACATGCACCAAACACCCTTCCCGTAGTCTTTGAAAGAGGACTTATTGGCGTGTACCACGATTGGTGTGAGGCTTTTGGTACTTATCCAAGATCATACGACCTTCTACATGCAGATCATCTCTTCTCAAGGCTTAAGAACAGGTTACATGACCTTTTCTCCTTTATTTGCTCCTCTGTTTCAGTTTTCCCCTCATAAAACATATGCATGATCCTGTCTTTCTTGATTATGAATCAAAACGAAAAGTCGGATGTACTTGTTCAGTTCAGGTCTACTTATATGATCATTCTTCTATCTGAAAAAAAAGAAAGAATATTGCTTTAAAAAGGTGACTCATAGTCCCTTTTCGAGTATTATTAATCCAGTCGGTGTGTATAAGAACGAACAGTTTCCACCTCTTTTTGGGCTATATTCCCTTGTTTTCCCCCATACCCCCTTTCAGCAAGGGTTTTGAAAAATCTTCTTCCGACCTCTGGAGGTGGTCTGTAAAGTTTGAAACTTTCCATTTCCAGACTTCAAATTTTCTTCATAGCTAATTAAGTGGTTCATTCACTGCAGGTGCAAGCATCCCATTGTGATTGTGGTTGAGATGGACCGTATATTACGGCCTGGTGGCTGGGGAATCATACGTGACAAGGTCGAAATACTTGATCCATTAGAGAAAATATTGAGAAGCTTGCACTGGGAGATACGAATGACTTTTGCCAAAGATAAGGAAGGCATCCTTTGTGCTCAGAAGACAATGTGGAGACCTTGATGAATGCTTAGAAGCAAGTCATCTGATTATTTGGACTACAGATTCCAGTCATTTTCCTGCTGGTTATCTATACACAGTGCCATTCTTGCCAACAATTGTGTTCCCTGTTCACATATTGCAAAAGAAATTGTCGTGGATCCAGAATTTAGACGTTGTGAGTATTGAGTTCGGAAATGTATACAAAGATTTAATTCATTGTTGGATCATCTCTGAAAGGAAAGTATTTTCCAACA</genome_strand>
        <mrna_strand>TTTAGTTGGCTTGGGTATTGAATGGTCCAACATTCGGAATGTAATGGATATGAAAGCCATCAATGGAGG......................................................................................................................ATTTGCAGCAGCTCTTGCACAGCAGAAGGTGTGGGTGATGAATGTTATTCCTGTACATGCACCAAACACCCTTCCCGTAGTCTTTGAAAGAGGACTTATTGGCGTGTACCACGATTGGTGTGAGGCTTTTGGTACTTATCCAAGATCATACGACCTTCTACATGCAGATCATCTCTTCTCAAGGCTTAAGAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCATCCCATTGTGATTGTGGTTGAGATGGACCGTATATTACGGCCTGGTGGCTGGGGAATCATACGTGACAAGGTCGAAATACTTGATCCATTAGAGAAAATATTGAGAAGCTTGCACTGGGAGATACGAATGACTTTTGCCAAAGATAAGGAAGGCATCCTTTGTGCTCAGAAGACAATGTGGAGACCTTGATGAATGCTTAGAAGCAAGTCATTTGATTATTTGGACTACAGATTCCAGTCATTTTCCTGCTGGTTATCTATACACAGTGCCATTCTTGCCAACAATTGTGTTCCCTGTTCACATATTGCAAAAGAAATTGTCGTGGATCCAGAATTTAGACGTTGTGAGTATTGAGTTCGGAAATGTATACAAAGATTTAATTCATTGTTGGATCATCTTTGAAAGGAAAGTATTTTCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E351719" ref_strand="+" ref_description="SGN-E351719 [cTOS-8-D19]">
      <seq>gaaggaaagaagttccacctctatgcaaagcaaatgagaacccagatgcatctctggtatgtgccgattaaatcttgcttgcacacaattcctgaatccatagaacaaagaggaaccgaatggcctgaggagtggcctaagagacttgaaacttatcccgaatggatgaacaatagagagaaattgatcgcagacagtgagcactggaaagctattgttgaccattcttatttagttggcttgggtattgaatggtccaacattcggaatgtaatggatatgaaagccatcaatggaggatttgcaccagctcttgcacagcaaaaggtgtgggtgatgaatgttattcctgtacatgcaccaaacacccttcccgtagtctttgaaagaggacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="144090" stop="142757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143790" g_stop="143736" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143735" i_stop="143517" i_length="219">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143516" g_stop="143274" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="299" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143273" i_stop="143156" i_length="118">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143155" g_stop="143057" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="398" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E351719" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143790" e_stop="143736"/>
          <exon e_start="143516" e_stop="143274"/>
          <exon e_start="143155" e_stop="143057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAAAAAAGTTCCACCTCTATGCAAAGCAAATGAGAACCCAGATGCATC-CTGGTGAGTTGGAAAAGCTTGTGTTGTTATACTTGTTCTCTTTTCGGTCAATTTGCATTTCCTTTACACATACTTCCGCTACTGTGCATGTGCGAGTAATCTTGGGAAAATAAGTGCACAACTCCATCATTGTATGTCATCACACAAATAAGCTACACTTCTCTCAGAAGTGGTAGAATAAGCATGATTTATGATAAATTCCAATTACCTTGTCTGCAACAGGTATGTGCCGATTAAATCTTGCTTGCACACAATTCCTGAATCCATAGAACAAAGAGGAACCGAATGGCCTGAGGAGTGGCCTAAGAGACTTGAAACTTATCCCGAATGGATGAACAATAGAGAGAAATTGATCGCAGACAGTGAGCACTGGAAAGCTATTGTTGACCATTCTTATTTAGTTGGCTTGGGTATTGAATGGTCCAACATTCGGAATGTAATGGATATGAAAGCCATCAATGGAGGGTAAGCCCCTAGCTTTGGTTAATCTGATGTTAGAGGCTCAAACATTAAAATGTTATTGGCTCTCCCTCTTCTTTTAATTGTAATATTGTGCCTCGGCAACTGAGAAAAATATACACAGATTTGCAGCAGCTCTTGCACAGCAGAAGGTGTGGGTGATGAATGTTATTCCTGTACATGCACCAAACACCCTTCCCGTAGTCTTTGAAAGAGGACTTAT</genome_strand>
        <mrna_strand>GAAGGAAAGAAGTTCCACCTCTATGCAAAGCAAATGAGAACCCAGATGCATCTCTG...........................................................................................................................................................................................................................GTATGTGCCGATTAAATCTTGCTTGCACACAATTCCTGAATCCATAGAACAAAGAGGAACCGAATGGCCTGAGGAGTGGCCTAAGAGACTTGAAACTTATCCCGAATGGATGAACAATAGAGAGAAATTGATCGCAGACAGTGAGCACTGGAAAGCTATTGTTGACCATTCTTATTTAGTTGGCTTGGGTATTGAATGGTCCAACATTCGGAATGTAATGGATATGAAAGCCATCAATGGAGG......................................................................................................................ATTTGCACCAGCTCTTGCACAGCAAAAGGTGTGGGTGATGAATGTTATTCCTGTACATGCACCAAACACCCTTCCCGTAGTCTTTGAAAGAGGACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E373198" ref_strand="+" ref_description="SGN-E373198 [TUS-32-M15]">
      <seq>cacagctttaacaagatttgggagaaaggtaaaaggttcatatcaatcttatggtcttggtgttaagttagctgcagtagtaattttgggtctttgttttgtattcatttggtctgtgttttcaccttcttcttattcagtagcctatcaaagggacacttttgatgatattagagaacctatttcatctgcaaataggaaaaaggttacacctttagttccttcaactaagaaagaacaaccccataataagaaactgaaacatagatcaagttctggtgagaaaaagaagagggttgataggtcttctttgccttcaaaatctggtggttggcataagaatgataaaagtggagttgataggaagagaaaaggtgaggatctgaagttacccgaaaaggttgatgaggtgaaggaacaagaattggaaggatctgaaactgatgtgttggagaaggagaatgaggaagacaaaataggaaatgataagcaagaagaagagaaaaaagtagttgaagttaaagagaatgagaaagagaaaacagaaaataatagtaaacaagaaggagaaggagtggatggtaaagagaatgagaaagaggaaatagaaagtactaaagaagaagaaggagaaggagaangagaaggaacagtagatggtaatgaaggtaatggtgaaatagctaatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="147145" stop="145854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146845" g_stop="146154" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E373198" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146845" e_stop="146154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCTTTAACAAGATTTGGGAGAAAGGTAAAAGGTTCATATCAATCTTATGGTCTTGGTGTTAAGTTAGCTGCAGTAGTAATTTTGGGTCTTTGTTTTGTATTCATTTGGTCTGTGTTTTCACCTTCTTCTTATTCAGTAGCCTATCAAAGGGACACTTTTGATGATATTAGAGAACCTATTTCATCTGCAAATAGGAAAAAGGTTACACCTTTAGTTCCTTCAACTAAGAAAGAACAACCCCATAATAAGAAACTGAAACATAGATCAAGTTCTGGTGAGAAAAAGAAGAGGGTTGATAGGTCTTCTTTGCCTTCAAAATCTGGTGGTTGGCATAAGAATGATAAAAGTGGAGTTGATAGGAAGAGAAAAGGTGAGGATCTGAAGTTACCCGAAAAGGTTGATGAGGTGAAGGAACAAGAATTGGAAGGATCTGAAACTGATGTGTTGGAGAAGGAGAATGAGGAAGACAAAATAGGAAATGATAAGCAAGAAGAAGAGAAAAAAGTAGTTGAAGTTAAAGAGAATGAGAAAGAAAAAACAGAAAATAATAGTAAACAAGAAGGAGAAGGAGTGGATGGTAAAGAGAATGAGAAAGAGGAAATAGAAAGTACTAAAGAAGAAGAAGGAGAAGGAGAAGGAGAAGGAACAGTAGATGGTAATGAAGGTAATGGTGAAATAGCTAATACTG</genome_strand>
        <mrna_strand>CACAGCTTTAACAAGATTTGGGAGAAAGGTAAAAGGTTCATATCAATCTTATGGTCTTGGTGTTAAGTTAGCTGCAGTAGTAATTTTGGGTCTTTGTTTTGTATTCATTTGGTCTGTGTTTTCACCTTCTTCTTATTCAGTAGCCTATCAAAGGGACACTTTTGATGATATTAGAGAACCTATTTCATCTGCAAATAGGAAAAAGGTTACACCTTTAGTTCCTTCAACTAAGAAAGAACAACCCCATAATAAGAAACTGAAACATAGATCAAGTTCTGGTGAGAAAAAGAAGAGGGTTGATAGGTCTTCTTTGCCTTCAAAATCTGGTGGTTGGCATAAGAATGATAAAAGTGGAGTTGATAGGAAGAGAAAAGGTGAGGATCTGAAGTTACCCGAAAAGGTTGATGAGGTGAAGGAACAAGAATTGGAAGGATCTGAAACTGATGTGTTGGAGAAGGAGAATGAGGAAGACAAAATAGGAAATGATAAGCAAGAAGAAGAGAAAAAAGTAGTTGAAGTTAAAGAGAATGAGAAAGAGAAAACAGAAAATAATAGTAAACAAGAAGGAGAAGGAGTGGATGGTAAAGAGAATGAGAAAGAGGAAATAGAAAGTACTAAAGAAGAAGAAGGAGAAGGAGAANGAGAAGGAACAGTAGATGGTAATGAAGGTAATGGTGAAATAGCTAATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E294193" ref_strand="+" ref_description="SGN-E294193 [cLET-13-N8]">
      <seq>cacagctttaacaagatttgggagaaaggtaaaaggttcatatcaatcttatggtcttggtgttaagttagctgcagtagtaattttgggtctttgttttgtattcatttggtctgtgttttcaccttcttcttattcagtagcctatcaaagggacacttttgatgatattagagaacctatttcatctgcaaataggaaaaaggttacacctttagttccttcaactaagaaagaacaaccccataataagaaactgaaacatagatcaagttctggtgagaaaaagaagagggttgataggtcttctttgccttcaaaatctggtggttggcataagaatgataaaagtggagttgataggaagagaaaaggtgaggatctgaagttacccgaaaaggttgatgaggtgaaggaacaagaattggaaggatctgaaactgatgtgttggagaaggagaatgaggaagacaaaataggaaatgataagcaagaagaagagaaaaaagtagttgaagttaaagagaatgagaaagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="147145" stop="146004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146845" g_stop="146304" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E294193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146845" e_stop="146304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCTTTAACAAGATTTGGGAGAAAGGTAAAAGGTTCATATCAATCTTATGGTCTTGGTGTTAAGTTAGCTGCAGTAGTAATTTTGGGTCTTTGTTTTGTATTCATTTGGTCTGTGTTTTCACCTTCTTCTTATTCAGTAGCCTATCAAAGGGACACTTTTGATGATATTAGAGAACCTATTTCATCTGCAAATAGGAAAAAGGTTACACCTTTAGTTCCTTCAACTAAGAAAGAACAACCCCATAATAAGAAACTGAAACATAGATCAAGTTCTGGTGAGAAAAAGAAGAGGGTTGATAGGTCTTCTTTGCCTTCAAAATCTGGTGGTTGGCATAAGAATGATAAAAGTGGAGTTGATAGGAAGAGAAAAGGTGAGGATCTGAAGTTACCCGAAAAGGTTGATGAGGTGAAGGAACAAGAATTGGAAGGATCTGAAACTGATGTGTTGGAGAAGGAGAATGAGGAAGACAAAATAGGAAATGATAAGCAAGAAGAAGAGAAAAAAGTAGTTGAAGTTAAAGAGAATGAGAAAGAAAAAA</genome_strand>
        <mrna_strand>CACAGCTTTAACAAGATTTGGGAGAAAGGTAAAAGGTTCATATCAATCTTATGGTCTTGGTGTTAAGTTAGCTGCAGTAGTAATTTTGGGTCTTTGTTTTGTATTCATTTGGTCTGTGTTTTCACCTTCTTCTTATTCAGTAGCCTATCAAAGGGACACTTTTGATGATATTAGAGAACCTATTTCATCTGCAAATAGGAAAAAGGTTACACCTTTAGTTCCTTCAACTAAGAAAGAACAACCCCATAATAAGAAACTGAAACATAGATCAAGTTCTGGTGAGAAAAAGAAGAGGGTTGATAGGTCTTCTTTGCCTTCAAAATCTGGTGGTTGGCATAAGAATGATAAAAGTGGAGTTGATAGGAAGAGAAAAGGTGAGGATCTGAAGTTACCCGAAAAGGTTGATGAGGTGAAGGAACAAGAATTGGAAGGATCTGAAACTGATGTGTTGGAGAAGGAGAATGAGGAAGACAAAATAGGAAATGATAAGCAAGAAGAAGAGAAAAAAGTAGTTGAAGTTAAAGAGAATGAGAAAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E337803" ref_strand="+" ref_description="SGN-E337803 [cTOE-17-D10]">
      <seq>tcaattctctcttgagctgccaagattcttgttttggggtaaaaaaagattgttgcttttgttgtttatatggaattctgatttctgggtatgtctcaggtttttgtttgagttagaaatgaggaagcacaacacagctttaacaagatttgggagaaaggtaaaaggttcatatcaatcttatggtcttggtgttaagttagctgcagtagtaattttgggtctttgttttgtattcatttggtctgtgttttcaccttcttcttattcagtagcctatcaaagggacacttttgatgatattagagaacctatttcatctgcaaataggaaaaaggttacacctttagttccttcaactaagaaagaacaaccccataataagaaactgaaacatagatcaagttctggtgagaaaaagaagagggttgataggtcttctttgccttcaaaatctggtggttggcataagaatgataaaagtggagttgataggaagagaaaaggtgaggatctgaagttacccgaaaaggttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="147277" stop="146140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146977" g_stop="146440" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E337803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146977" e_stop="146440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCTCTCTTGAGCTGCCAAGATTCTTGTTTTGGGGTAAAAAAAGATTGTTGCTTTTGTTGTTTATATGGAATTCTGATTTCTGGGTATGTCTCAGGTTTTTGTTTGAGTTAGAAATGAGGAAGCACAACACAGCTTTAACAAGATTTGGGAGAAAGGTAAAAGGTTCATATCAATCTTATGGTCTTGGTGTTAAGTTAGCTGCAGTAGTAATTTTGGGTCTTTGTTTTGTATTCATTTGGTCTGTGTTTTCACCTTCTTCTTATTCAGTAGCCTATCAAAGGGACACTTTTGATGATATTAGAGAACCTATTTCATCTGCAAATAGGAAAAAGGTTACACCTTTAGTTCCTTCAACTAAGAAAGAACAACCCCATAATAAGAAACTGAAACATAGATCAAGTTCTGGTGAGAAAAAGAAGAGGGTTGATAGGTCTTCTTTGCCTTCAAAATCTGGTGGTTGGCATAAGAATGATAAAAGTGGAGTTGATAGGAAGAGAAAAGGTGAGGATCTGAAGTTACCCGAAAAGGTTGAT</genome_strand>
        <mrna_strand>TCAATTCTCTCTTGAGCTGCCAAGATTCTTGTTTTGGGGTAAAAAAAGATTGTTGCTTTTGTTGTTTATATGGAATTCTGATTTCTGGGTATGTCTCAGGTTTTTGTTTGAGTTAGAAATGAGGAAGCACAACACAGCTTTAACAAGATTTGGGAGAAAGGTAAAAGGTTCATATCAATCTTATGGTCTTGGTGTTAAGTTAGCTGCAGTAGTAATTTTGGGTCTTTGTTTTGTATTCATTTGGTCTGTGTTTTCACCTTCTTCTTATTCAGTAGCCTATCAAAGGGACACTTTTGATGATATTAGAGAACCTATTTCATCTGCAAATAGGAAAAAGGTTACACCTTTAGTTCCTTCAACTAAGAAAGAACAACCCCATAATAAGAAACTGAAACATAGATCAAGTTCTGGTGAGAAAAAGAAGAGGGTTGATAGGTCTTCTTTGCCTTCAAAATCTGGTGGTTGGCATAAGAATGATAAAAGTGGAGTTGATAGGAAGAGAAAAGGTGAGGATCTGAAGTTACCCGAAAAGGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E542295" ref_strand="-" ref_description="SGN-E542295 [TUS-63-I13]">
      <seq>tgcctctgtatgacattttgaatgagtttcagaagggccatagccacatcgctgttgtatataaagatctgaacgagacgaaagatatgccagtgaatgataaagatgctgatagcacaacaccaaaatctaactcgcatgacattaagactgcattacataaggctgatgatgaccaagtcccaaagaaatctcctcccccctactcctgctttcaagaagagacacaaaggttgctcattttgtattttggatttggaaaacactccaataccagagatcccttccaatcaagaagttgttggtgttattactatggaagatgtcattgaggagcttcttcaggaggagatattggatgaaaccgatgaatatgtcaacattcataacaggataaaggtgaacatgaattcttcacaagatttttcagctgaacagaattcctcaactcagctgctccaggccctctgactgttcaatcactatcttttaagacttctcaatagctacctcaagtatagcaacatgttaaatgtatagtttctctattctagcatatcctaattctagtatttctgtattactgtttaaacttagattagactggtcccgtagagcgcgaattcgggtagatagtatagccctatatacagaggaataggctgcaaattcaacaagaaagaaatttggtttggattgtaaaattgtaatgcagtgtattgctggagttttcagacatacagagttcattgactggaatctcatcagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="150124" stop="147591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149824" g_stop="149720" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149719" i_stop="149422" i_length="298">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149421" g_stop="149183" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="345" r_length="240" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149182" i_stop="148972" i_length="211">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148971" g_stop="148925" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="392" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="148924" i_stop="148269" i_length="656">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148268" g_stop="147894" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="767" r_length="375" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="770" polyA_stop="779"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E542295" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542295" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="149824" e_stop="149720"/>
          <exon e_start="149421" e_stop="149183"/>
          <exon e_start="148971" e_stop="148925"/>
          <exon e_start="148268" e_stop="147894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTCTGTATGACATTTTGAATGAGTTTCAGAAGGGCCATAGCCACATCGCTGTTGTATATAAAGATCTGAACGAGACGAAAGATATGCCAGTGAATGATAAAGGTCTGAAACCTTGAACTAGTCTTGGCTCTACCACGTGGCTACTTATCCTAGTTTTTCTGTTAAAACATTATTGCGAGCCTTAAACGTCTTTGTCTGCATATCCAGTTTAATTTCTCATTCATTTTGTGCTAAATGGGCTTCTGATCAACTCTCTCCAAGTCCTCAATACCTTGTAATTACCTCTATTTCAGAAATGAAGCAAACAGATCTTCAGAGATTAAACATTACAGTTTTCTATTAAATTTGTGAAATTACGATTTGGCCAACTTTTAATTGTTGTATGAACTGATAATTGCAGATGCTGATAGCACAACACCAAAATCTAACTCGCATGACATTAAGACTGCATTACATAAGGCTGATGATGACCAAGTCCCAAAGAAATCTCCT-CCCCCTACTCCTGCTTTCAAGAAGAGACACAAAGGTTGCTCATTTTGTATTTTGGATTTGGAAAACACTCCAATACCAGAGATCCCTTCCAATCAAGAAGTTGTTGGTGTTATTACTATGGAAGATGTCATTGAGGAGCTTCTTCAGGTGCTTAAGATTCCGACTTTCATTAATATTTGTTTCTCCTTTTTGTGGTATTGTTTTTATTGTAGACCCCCCTCCCCCCCCCCCCCCCTCCAACCCAGAGACAGGAGTATGTACAACACATTTTTACTCTTTATGCACTTCCATATCATTCTTAGAGAATCTATCCAAACCTCTCTGTGTATTACTTTCTCATTTTGCATTTCTATGGCAGGAGGAGATATTGGATGAAACCGATGAATATGTCAACATTCATAACAGGTATTGTCTGTCTAGCAGTGCCATTTATGCTCCTTAATTTGTTCTAGCATTGGCATGTAATACTCTTTTAGCTAAAGAACTAGTTCTATGCTACTTCAATACTATTAAAGATCAATCTTAATCTATTGCTGCCCCTCCTAAAGAAAATAGGAGGGAAGGAGAGCGACTGAGCATGTGGTAAGGTTTTCTCCCCTTTGTGGGGATTGTGAAGGTGTTGTTGCACACTTGCACTTGACAATATTTGCCTCTGTCCTTAGAAAGGGTTAGTTTTGTCAAAGGCTCATTTAAGCGCGTTTAAGCCCTGGGTCTCAGAATAGCTGAAGGAGTGCGCTTTGGTGCAGGCAAAACACTAAGGCGTACACCTCATTGACCATGAGTTCTATCTTGAAGGCGAGTGGTACTAAACAACAAAATATAATTGACAATTAAGTGTACTACTAGTTGCTGAGGAAAACATTATGAATGAATCTGTTACTTTCTTGAATTACATATATATTTCGCCTTCATTGCACCTTCTTTTTACTGAAGCCCACGGTGCTTAAAGCCCCATTAGACCGGGAGGCTGGAGTGCTCGTAGAGCTTGTCCGCTTTACGAGATTGTGAATTGATCAGTTGTGTGTCTGATGGGATTGTAATCATCAACTTACTCTTTTCAGGATAAAGGTGAACATGAATTCTTCACAAGATTTTTCAGCTGAACAGAATTCCTCAACTCAGCTGCTCCAGGCCCTCTGACTGTTCAATCACTATCTTTTAAGACTTCTCAATAGCTACCTCAAGTATAGCAACATGTTAAATGTATAGTTTCTCTATTCTAGCATATCCTAATTCTAGTATTTTTGTATTACTGTTTAAACTTAGATTAGACTGGTCCCGTAGAGCGCGAATTCGGGTAGATAGTATAGCCCTATATACAGAGGAATAGGCTGCAAATTCAACAAGAAAGAAATTTGGTTTGGATTGTAAAATTGTAATGCAGTGTATTGCTGGAGTTTTCAGACATACAGAGTTCATTGAGTGGAATCTCATCA</genome_strand>
        <mrna_strand>TGCCTCTGTATGACATTTTGAATGAGTTTCAGAAGGGCCATAGCCACATCGCTGTTGTATATAAAGATCTGAACGAGACGAAAGATATGCCAGTGAATGATAAAG..........................................................................................................................................................................................................................................................................................................ATGCTGATAGCACAACACCAAAATCTAACTCGCATGACATTAAGACTGCATTACATAAGGCTGATGATGACCAAGTCCCAAAGAAATCTCCTCCCCCCTACTCCTGCTTTCAAGAAGAGACACAAAGGTTGCTCATTTTGTATTTTGGATTTGGAAAACACTCCAATACCAGAGATCCCTTCCAATCAAGAAGTTGTTGGTGTTATTACTATGGAAGATGTCATTGAGGAGCTTCTTCAG...................................................................................................................................................................................................................GAGGAGATATTGGATGAAACCGATGAATATGTCAACATTCATAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGGTGAACATGAATTCTTCACAAGATTTTTCAGCTGAACAGAATTCCTCAACTCAGCTGCTCCAGGCCCTCTGACTGTTCAATCACTATCTTTTAAGACTTCTCAATAGCTACCTCAAGTATAGCAACATGTTAAATGTATAGTTTCTCTATTCTAGCATATCCTAATTCTAGTATTTCTGTATTACTGTTTAAACTTAGATTAGACTGGTCCCGTAGAGCGCGAATTCGGGTAGATAGTATAGCCCTATATACAGAGGAATAGGCTGCAAATTCAACAAGAAAGAAATTTGGTTTGGATTGTAAAATTGTAATGCAGTGTATTGCTGGAGTTTTCAGACATACAGAGTTCATTGACTGGAATCTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7xnv1y/sgn_ests_tomato" ref_id="SGN-E238857" ref_strand="-" ref_description="SGN-E238857 [cLEL-9-G9]">
      <seq>caggataaaggtgaacatgaattcttcacaagatttttcagctgaacagaattcctcaactcagctgctccaggccctctgactgttcaatcactatcttttaagacttctcaatagctacctcaagtatagcaacatgttaaatgtatagtttctctattctagcatatcctaattctagtatttctgtattactgtttaaacttagattagactggtcccgtagagcgcgaattcgggtagatagtatagccctatatacagaggaataggctgcaaattcaacaagaaagaaatttggtttggattgtaaaattgtaatgcagtgtattgctggagttttcagaaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-ZJrTi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="148571" stop="147617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="148271" g_stop="147917" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="367"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-E238857" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238857" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="148271" e_stop="147917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATAAAGGTGAACATGAATTCTTCACAAGATTTTTCAGCTGAACAGAATTCCTCAACTCAGCTGCTCCAGGCCCTCTGACTGTTCAATCACTATCTTTTAAGACTTCTCAATAGCTACCTCAAGTATAGCAACATGTTAAATGTATAGTTTCTCTATTCTAGCATATCCTAATTCTAGTATTTTTGTATTACTGTTTAAACTTAGATTAGACTGGTCCCGTAGAGCGCGAATTCGGGTAGATAGTATAGCCCTATATACAGAGGAATAGGCTGCAAATTCAACAAGAAAGAAATTTGGTTTGGATTGTAAAATTGTAATGCAGTGTATTGCTGGAGTTTTCAGACATACAGA</genome_strand>
        <mrna_strand>CAGGATAAAGGTGAACATGAATTCTTCACAAGATTTTTCAGCTGAACAGAATTCCTCAACTCAGCTGCTCCAGGCCCTCTGACTGTTCAATCACTATCTTTTAAGACTTCTCAATAGCTACCTCAAGTATAGCAACATGTTAAATGTATAGTTTCTCTATTCTAGCATATCCTAATTCTAGTATTTCTGTATTACTGTTTAAACTTAGATTAGACTGGTCCCGTAGAGCGCGAATTCGGGTAGATAGTATAGCCCTATATACAGAGGAATAGGCTGCAAATTCAACAAGAAAGAAATTTGGTTTGGATTGTAAAATTGTAATGCAGTGTATTGCTGGAGTTTTCAGAAATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>573</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="10" PGL_stop="3891"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10" e_stop="135"/>
            <exon e_start="926" e_stop="970"/>
            <exon e_start="1165" e_stop="1233"/>
            <exon e_start="1330" e_stop="1421"/>
            <exon e_start="1526" e_stop="1568"/>
            <exon e_start="2454" e_stop="2513"/>
            <exon e_start="2905" e_stop="2964"/>
            <exon e_start="3311" e_stop="3606"/>
            <exon e_start="3871" e_stop="3891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.921"/>
          <exon-intron don_prob="0.958" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.093" e_score="0.986"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="10" e_stop="135" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="136" i_stop="925" i_length="790"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="926" e_stop="970" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.999">
            <gDNA_intron_boundary i_start="971" i_stop="1164" i_length="194"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1165" e_stop="1233" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="1234" i_stop="1329" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1330" e_stop="1421" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.987">
            <gDNA_intron_boundary i_start="1422" i_stop="1525" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1526" e_stop="1568" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.940" acc_prob="0.958">
            <gDNA_intron_boundary i_start="1569" i_stop="2453" i_length="885"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2454" e_stop="2513" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2514" i_stop="2904" i_length="391"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2905" e_stop="2964" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="2965" i_stop="3310" i_length="346"/>
          </intron>
          <exon e_serial="8" e_score="0.986">
            <gDNA_exon_boundary e_start="3311" e_stop="3606" e_length="296"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.093">
            <gDNA_intron_boundary i_start="3607" i_stop="3870" i_length="264"/>
          </intron>
          <exon e_serial="9" e_score="0.571">
            <gDNA_exon_boundary e_start="3871" e_stop="3891" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10" stop="135"/>
              <exon start="926" stop="970"/>
              <exon start="1165" stop="1233"/>
              <exon start="1330" stop="1421"/>
              <exon start="1526" stop="1568"/>
              <exon start="2454" stop="2513"/>
              <exon start="2905" stop="2964"/>
              <exon start="3311" stop="3393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11" stop="135"/>
              <exon start="926" stop="970"/>
              <exon start="1165" stop="1233"/>
              <exon start="1330" stop="1421"/>
              <exon start="1526" stop="1568"/>
              <exon start="2454" stop="2513"/>
              <exon start="2905" stop="2964"/>
              <exon start="3311" stop="3508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11" stop="135"/>
              <exon start="926" stop="970"/>
              <exon start="1165" stop="1233"/>
              <exon start="1330" stop="1421"/>
              <exon start="1526" stop="1568"/>
              <exon start="2454" stop="2513"/>
              <exon start="2905" stop="2964"/>
              <exon start="3311" stop="3456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11" stop="135"/>
              <exon start="926" stop="970"/>
              <exon start="1165" stop="1233"/>
              <exon start="1330" stop="1421"/>
              <exon start="1526" stop="1568"/>
              <exon start="2454" stop="2513"/>
              <exon start="2905" stop="2964"/>
              <exon start="3311" stop="3434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11" stop="135"/>
              <exon start="926" stop="970"/>
              <exon start="1165" stop="1233"/>
              <exon start="1330" stop="1421"/>
              <exon start="1526" stop="1568"/>
              <exon start="2454" stop="2513"/>
              <exon start="2905" stop="2964"/>
              <exon start="3311" stop="3434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11" stop="135"/>
              <exon start="926" stop="970"/>
              <exon start="1165" stop="1233"/>
              <exon start="1330" stop="1421"/>
              <exon start="1526" stop="1568"/>
              <exon start="2454" stop="2513"/>
              <exon start="2905" stop="2964"/>
              <exon start="3311" stop="3433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1362" stop="1421"/>
              <exon start="1526" stop="1568"/>
              <exon start="2454" stop="2513"/>
              <exon start="2905" stop="2964"/>
              <exon start="3311" stop="3606"/>
              <exon start="3871" stop="3891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTCTTTACGCTACAGAGAAATCGATGAAGCTGCCTTAGAGCAAGCTCTGGCAGCTGCTGTGACGTGCACAATTTTGGCTGCAGCAGGTCCTCAACGATCTCGTGTACTTGCCACACTGTACAAA : GATGAGCGTTGCTCCAAATTGAAAATCTACCCAATCTTGCAGAAG : GTCTATCTAGAGAGAATCTTGAGAAAACCTGAAATTGATGCTTTTGCAGAAGAGTTGAAACCACATCAG : CAAGCACTTTTACCTGATAACTTCACAGTTCTGGATCGTGCTATGATTGAGCACAATCTCTTGAGTGCTAGCAAACTTTATACAAATATAAG : TTTTGATGAGTTGGGCACTTTGTTGGGCATTCCTCCTCAAAAG : GCTGAGAAAATTGCTTCAAGAATGATTTTCGAAGATAGAATGCGGGGATCCATTGATCAG : GTTGAGGGCGTCATACATTTTGAGGATGACACGGAAGAGCTGCAACAATGGGATCAACAG : ATCATGGGCCTTTGTCAAGCTCTCAATGATGTTCTTGATAGCATGGCAAAGAAGGGGCTCCCTATTCCTGTCTAGTTCATTTTGTGGTCATTTTTGAAGAATCTGGTACGATGCTGATGCACTCCTTCCTCGTACCATTTACTGGACTGGCGCCACTCTATACTTTCACCAGTTTTAAAACTTTGCTCGGAACTCGTCTCTTTAAGTTAGATTTATATTGTACATGACACACCTCTCCTCCAAGTTCAATGGTTTATTATGGATATAAATGTTAATTTTGTTACATTTCTCTTTTC : CATGAGAAAAAGGAAGAGAGA</gDNA_template>
            <first_frame> D  S  L  R  Y  R  E  I  D  E  A  A  L  E  Q  A  L  A  A  A  V  T  C  T  I  L  A  A  A  G  P  Q  R  S  R  V  L  A  T  L  Y  K  :  D  E  R  C  S  K  L  K  I  Y  P  I  L  Q  K  :  V  Y  L  E  R  I  L  R  K  P  E  I  D  A  F  A  E  E  L  K  P  H  Q  :  Q  A  L  L  P  D  N  F  T  V  L  D  R  A  M  I  E  H  N  L  L  S  A  S  K  L  Y  T  N  I  S :   F  D  E  L  G  T  L  L  G  I  P  P  Q  K  :  A  E  K  I  A  S  R  M  I  F  E  D  R  M  R  G  S  I  D  Q  :  V  E  G  V  I  H  F  E  D  D  T  E  E  L  Q  Q  W  D  Q  Q  :  I  M  G  L  C  Q  A  L  N  D  V  L  D  S  M  A  K  K  G  L  P  I  P  V  *  F  I  L  W  S  F  L  K  N  L  V  R  C  *  C  T  P  S  S  Y  H  L  L  D  W  R  H  S  I  L  S  P  V  L  K  L  C  S  E  L  V  S  L  S  *  I  Y  I  V  H  D  T  P  L  L  Q  V  Q  W  F  I  M  D  I  N  V  N  F  V  T  F  L  F  S :   M  R  K  R  K  R   </first_frame>
            <second_frame>  I  L  Y  A  T  E  K  S  M  K  L  P  *  S  K  L  W  Q  L  L  *  R  A  Q  F  W  L  Q  Q  V  L  N  D  L  V  Y  L  P  H  C  T  K :   M  S  V  A  P  N  *  K  S  T  Q  S  C  R  R :   S  I  *  R  E  S  *  E  N  L  K  L  M  L  L  Q  K  S  *  N  H  I  S :   K  H  F  Y  L  I  T  S  Q  F  W  I  V  L  *  L  S  T  I  S  *  V  L  A  N  F  I  Q  I  *   : V  L  M  S  W  A  L  C  W  A  F  L  L  K  R :   L  R  K  L  L  Q  E  *  F  S  K  I  E  C  G  D  P  L  I  R :   L  R  A  S  Y  I  L  R  M  T  R  K  S  C  N  N  G  I  N  R :   S  W  A  F  V  K  L  S  M  M  F  L  I  A  W  Q  R  R  G  S  L  F  L  S  S  S  F  C  G  H  F  *  R  I  W  Y  D  A  D  A  L  L  P  R  T  I  Y  W  T  G  A  T  L  Y  F  H  Q  F  *  N  F  A  R  N  S  S  L  *  V  R  F  I  L  Y  M  T  H  L  S  S  K  F  N  G  L  L  W  I  *  M  L  I  L  L  H  F  S  F   : P  *  E  K  G  R  E  </second_frame>
            <third_frame>   F  F  T  L  Q  R  N  R  *  S  C  L  R  A  S  S  G  S  C  C  D  V  H  N  F  G  C  S  R  S  S  T  I  S  C  T  C  H  T  V  Q   : R  *  A  L  L  Q  I  E  N  L  P  N  L  A  E   : G  L  S  R  E  N  L  E  K  T  *  N  *  C  F  C  R  R  V  E  T  T  S   : A  S  T  F  T  *  *  L  H  S  S  G  S  C  Y  D  *  A  Q  S  L  E  C  *  Q  T  L  Y  K  Y  K  :  F  *  *  V  G  H  F  V  G  H  S  S  S  K   : G  *  E  N  C  F  K  N  D  F  R  R  *  N  A  G  I  H  *  S   : G  *  G  R  H  T  F  *  G  *  H  G  R  A  A  T  M  G  S  T   : D  H  G  P  L  S  S  S  Q  *  C  S  *  *  H  G  K  E  G  A  P  Y  S  C  L  V  H  F  V  V  I  F  E  E  S  G  T  M  L  M  H  S  F  L  V  P  F  T  G  L  A  P  L  Y  T  F  T  S  F  K  T  L  L  G  T  R  L  F  K  L  D  L  Y  C  T  *  H  T  S  P  P  S  S  M  V  Y  Y  G  Y  K  C  *  F  C  Y  I  S  L  F  :  H  E  K  K  E  E  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10" stop="135"/>
                    <exon start="926" stop="970"/>
                    <exon start="1165" stop="1233"/>
                    <exon start="1330" stop="1421"/>
                    <exon start="1526" stop="1568"/>
                    <exon start="2454" stop="2513"/>
                    <exon start="2905" stop="2964"/>
                    <exon start="3311" stop="3385"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSLRYREIDEAALEQALAAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQQALLPDNFTVLDRAMIEHNLLSASKLYTNISFDELGTLLGIPPQKAEKIASRMIFEDRMRGSIDQVEGVIHFEDDTEELQQWDQQIMGLCQALNDVLDSMAKKGLPIPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="20515" PGL_stop="18607"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20515" e_stop="18607"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="20515" e_stop="18607" e_length="1909"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20515" stop="19899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20514" stop="20018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20344" stop="19760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20070" stop="19711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19988" stop="19215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19553" stop="18829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544174" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19182" stop="18607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19182" stop="18607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19182" stop="18611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19182" stop="18660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352474" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAGTATAGTCCTCTTTGGTTGGAAAGGTTTCAGTTTATATCAGCAGTGAGATTAGGATCAGATGCAACTAGTATCAATGTGTTACCATTTAGAGATGCTGAAGGACTGAGTAAGTATGTCGCCATTGGCGATGATCGCGGGAAAGTGTATGCATTCTCTAGAAATGGAGAAGTTTTGGTTGAATTTCAGACGTCGATGAGTTCACCAATAACAGCCTATGTGTCGTACTTGTCTGTTTATAAGAATGAGAGTGTGGTTGTTACGGGGCATGAGAATGGTGGGATTTTGATGCATAGAATTTGGGAGGTAGTAGTACCTGATGGTGATGACAGGACTTCTCTTCGTATGGAAACTGTAGGAAAATTTGCTTCACCGGAAATCGAGGAAGGAGGGTCTTCGATTTTAAGTTTAGAGGTGCATCATGTTGGAAGAAATAGGTATATCTTGTCCACGGATTCTGGTGGGAAACTCTGGGTTTTTAGGGAGAATGGAACTGTTTATGGGGTGACAACACCAAAGAGCAGGCCACTTGCGTTCTTGAAACAAAGGCTACTATTTCTAACTGAGACTGGTGCAGGGTCACTAGACTTGAGGACCATGAAGATTAGGGAATCTGAATGTGAAGGTTTAAACAATTCTATTGCTAAGAGTTATGTATTTGATGCAACTGAACGGTCGAAAGCCTATGGGTTTACATCTGATGGTGATTTGATTCATGTGCTACTCTTAGGTGATAATATGAACTTCAAGTGCAGGGTTAGATCCAAAAGGAAGTTAGAGATGGCCGAGCCTCTGTCTTTTCAAGCGATTAAAGGATATTTGCTTGTTGCTAACCAGGATAAGGTATCACTGTATAACGTGTCATCGCTGCATTACGTGCGGTCTGGTGGACCAAGACAATTGTTCTCTGTTGGTCATGATGAGATTGTAGCATCATTTTTGAGCTCTCAATCTTTGGAACCAAATGATAAAAGCAGAAAGGTTATTCCTTTAGTTGCCAGTGATCAAGAAAAGCTCGTTATTCTTGGCCTTGGAAGTGGTTACTTGGGGATATATCGCTCAAACCTTCCAGTTTTCAAAAATGAGTTCAACACTATGCTGTGGACGAGTCCTGTTTTATTTTTCATCATTTTCCTTTTAGGTGCATATTATTTTTTTGCCAAGAAAAAGGAAGCTCTTACCTCCTGGGGACCTGACGATCCTTTCCCTTCTACGGGTGTTACAAGTGGCGCTCCAATGGGATCCAGCCAGGGTGACAGATCTTATCCTGATTCATCGAGGAATGCAGATCTGATGGATCTTAGGGGTAGTAGCCTCAGAGGTCCATCTGGAAGGTATGTCTCTCCATCTCGCTATTCTGGTGGAACGGCAGGTGCCTATAGAACAAATTCTGCTGATACAAATTCTAGGTCTGCCTCTGTTGATCCCAACTTTAGAACTACCTCGGAGTTAAAATTTAGGGGGACGAATCTAGAAACACCAGGTTTTCCAAAAAGGAGAGATAGCCTGTTTGTAAACAGTCAAATTGTGGATGATGGCAAGTAACCTGCAGTTCATGTATGGTACATGTGTTTCAGCACCATACTGTCATTTGGACACGTGGGGAAGCTGACAATCTATAGCTGTAACTTTGCAACGGGTTACTCGTATTGAGAGGAAATAAAAAGAACATTTTGAGCTTTCAGTTCTGATTGCCTTAAATTGATAATCAAGGTTAAGCAGATGTCTGTTAACAATTTTTTCTCTCTTTTCCATTTATGCTAAATATTTATTCCAAGTATGCGCGCAATCCATCTGTAAATTCAGTTCTAGTGGAGATTATTCATATAGTGGTTGAAAGATATCTGAGTTTGAGATCAAGGCGGAAAAGATAAGCAGAACCCCCACCCCAAATAGAAAAAAGAAA</gDNA_template>
            <first_frame> T  K  Y  S  P  L  W  L  E  R  F  Q  F  I  S  A  V  R  L  G  S  D  A  T  S  I  N  V  L  P  F  R  D  A  E  G  L  S  K  Y  V  A  I  G  D  D  R  G  K  V  Y  A  F  S  R  N  G  E  V  L  V  E  F  Q  T  S  M  S  S  P  I  T  A  Y  V  S  Y  L  S  V  Y  K  N  E  S  V  V  V  T  G  H  E  N  G  G  I  L  M  H  R  I  W  E  V  V  V  P  D  G  D  D  R  T  S  L  R  M  E  T  V  G  K  F  A  S  P  E  I  E  E  G  G  S  S  I  L  S  L  E  V  H  H  V  G  R  N  R  Y  I  L  S  T  D  S  G  G  K  L  W  V  F  R  E  N  G  T  V  Y  G  V  T  T  P  K  S  R  P  L  A  F  L  K  Q  R  L  L  F  L  T  E  T  G  A  G  S  L  D  L  R  T  M  K  I  R  E  S  E  C  E  G  L  N  N  S  I  A  K  S  Y  V  F  D  A  T  E  R  S  K  A  Y  G  F  T  S  D  G  D  L  I  H  V  L  L  L  G  D  N  M  N  F  K  C  R  V  R  S  K  R  K  L  E  M  A  E  P  L  S  F  Q  A  I  K  G  Y  L  L  V  A  N  Q  D  K  V  S  L  Y  N  V  S  S  L  H  Y  V  R  S  G  G  P  R  Q  L  F  S  V  G  H  D  E  I  V  A  S  F  L  S  S  Q  S  L  E  P  N  D  K  S  R  K  V  I  P  L  V  A  S  D  Q  E  K  L  V  I  L  G  L  G  S  G  Y  L  G  I  Y  R  S  N  L  P  V  F  K  N  E  F  N  T  M  L  W  T  S  P  V  L  F  F  I  I  F  L  L  G  A  Y  Y  F  F  A  K  K  K  E  A  L  T  S  W  G  P  D  D  P  F  P  S  T  G  V  T  S  G  A  P  M  G  S  S  Q  G  D  R  S  Y  P  D  S  S  R  N  A  D  L  M  D  L  R  G  S  S  L  R  G  P  S  G  R  Y  V  S  P  S  R  Y  S  G  G  T  A  G  A  Y  R  T  N  S  A  D  T  N  S  R  S  A  S  V  D  P  N  F  R  T  T  S  E  L  K  F  R  G  T  N  L  E  T  P  G  F  P  K  R  R  D  S  L  F  V  N  S  Q  I  V  D  D  G  K  *  P  A  V  H  V  W  Y  M  C  F  S  T  I  L  S  F  G  H  V  G  K  L  T  I  Y  S  C  N  F  A  T  G  Y  S  Y  *  E  E  I  K  R  T  F  *  A  F  S  S  D  C  L  K  L  I  I  K  V  K  Q  M  S  V  N  N  F  F  S  L  F  H  L  C  *  I  F  I  P  S  M  R  A  I  H  L  *  I  Q  F  *  W  R  L  F  I  *  W  L  K  D  I  *  V  *  D  Q  G  G  K  D  K  Q  N  P  H  P  K  *  K  K  E  </first_frame>
            <second_frame>  Q  S  I  V  L  F  G  W  K  G  F  S  L  Y  Q  Q  *  D  *  D  Q  M  Q  L  V  S  M  C  Y  H  L  E  M  L  K  D  *  V  S  M  S  P  L  A  M  I  A  G  K  C  M  H  S  L  E  M  E  K  F  W  L  N  F  R  R  R  *  V  H  Q  *  Q  P  M  C  R  T  C  L  F  I  R  M  R  V  W  L  L  R  G  M  R  M  V  G  F  *  C  I  E  F  G  R  *  *  Y  L  M  V  M  T  G  L  L  F  V  W  K  L  *  E  N  L  L  H  R  K  S  R  K  E  G  L  R  F  *  V  *  R  C  I  M  L  E  E  I  G  I  S  C  P  R  I  L  V  G  N  S  G  F  L  G  R  M  E  L  F  M  G  *  Q  H  Q  R  A  G  H  L  R  S  *  N  K  G  Y  Y  F  *  L  R  L  V  Q  G  H  *  T  *  G  P  *  R  L  G  N  L  N  V  K  V  *  T  I  L  L  L  R  V  M  Y  L  M  Q  L  N  G  R  K  P  M  G  L  H  L  M  V  I  *  F  M  C  Y  S  *  V  I  I  *  T  S  S  A  G  L  D  P  K  G  S  *  R  W  P  S  L  C  L  F  K  R  L  K  D  I  C  L  L  L  T  R  I  R  Y  H  C  I  T  C  H  R  C  I  T  C  G  L  V  D  Q  D  N  C  S  L  L  V  M  M  R  L  *  H  H  F  *  A  L  N  L  W  N  Q  M  I  K  A  E  R  L  F  L  *  L  P  V  I  K  K  S  S  L  F  L  A  L  E  V  V  T  W  G  Y  I  A  Q  T  F  Q  F  S  K  M  S  S  T  L  C  C  G  R  V  L  F  Y  F  S  S  F  S  F  *  V  H  I  I  F  L  P  R  K  R  K  L  L  P  P  G  D  L  T  I  L  S  L  L  R  V  L  Q  V  A  L  Q  W  D  P  A  R  V  T  D  L  I  L  I  H  R  G  M  Q  I  *  W  I  L  G  V  V  A  S  E  V  H  L  E  G  M  S  L  H  L  A  I  L  V  E  R  Q  V  P  I  E  Q  I  L  L  I  Q  I  L  G  L  P  L  L  I  P  T  L  E  L  P  R  S  *  N  L  G  G  R  I  *  K  H  Q  V  F  Q  K  G  E  I  A  C  L  *  T  V  K  L  W  M  M  A  S  N  L  Q  F  M  Y  G  T  C  V  S  A  P  Y  C  H  L  D  T  W  G  S  *  Q  S  I  A  V  T  L  Q  R  V  T  R  I  E  R  K  *  K  E  H  F  E  L  S  V  L  I  A  L  N  *  *  S  R  L  S  R  C  L  L  T  I  F  S  L  F  S  I  Y  A  K  Y  L  F  Q  V  C  A  Q  S  I  C  K  F  S  S  S  G  D  Y  S  Y  S  G  *  K  I  S  E  F  E  I  K  A  E  K  I  S  R  T  P  T  P  N  R  K  K  K </second_frame>
            <third_frame>   K  V  *  S  S  L  V  G  K  V  S  V  Y  I  S  S  E  I  R  I  R  C  N  *  Y  Q  C  V  T  I  *  R  C  *  R  T  E  *  V  C  R  H  W  R  *  S  R  E  S  V  C  I  L  *  K  W  R  S  F  G  *  I  S  D  V  D  E  F  T  N  N  S  L  C  V  V  L  V  C  L  *  E  *  E  C  G  C  Y  G  A  *  E  W  W  D  F  D  A  *  N  L  G  G  S  S  T  *  W  *  *  Q  D  F  S  S  Y  G  N  C  R  K  I  C  F  T  G  N  R  G  R  R  V  F  D  F  K  F  R  G  A  S  C  W  K  K  *  V  Y  L  V  H  G  F  W  W  E  T  L  G  F  *  G  E  W  N  C  L  W  G  D  N  T  K  E  Q  A  T  C  V  L  E  T  K  A  T  I  S  N  *  D  W  C  R  V  T  R  L  E  D  H  E  D  *  G  I  *  M  *  R  F  K  Q  F  Y  C  *  E  L  C  I  *  C  N  *  T  V  E  S  L  W  V  Y  I  *  W  *  F  D  S  C  A  T  L  R  *  *  Y  E  L  Q  V  Q  G  *  I  Q  K  E  V  R  D  G  R  A  S  V  F  S  S  D  *  R  I  F  A  C  C  *  P  G  *  G  I  T  V  *  R  V  I  A  A  L  R  A  V  W  W  T  K  T  I  V  L  C  W  S  *  *  D  C  S  I  I  F  E  L  S  I  F  G  T  K  *  *  K  Q  K  G  Y  S  F  S  C  Q  *  S  R  K  A  R  Y  S  W  P  W  K  W  L  L  G  D  I  S  L  K  P  S  S  F  Q  K  *  V  Q  H  Y  A  V  D  E  S  C  F  I  F  H  H  F  P  F  R  C  I  L  F  F  C  Q  E  K  G  S  S  Y  L  L  G  T  *  R  S  F  P  F  Y  G  C  Y  K  W  R  S  N  G  I  Q  P  G  *  Q  I  L  S  *  F  I  E  E  C  R  S  D  G  S  *  G  *  *  P  Q  R  S  I  W  K  V  C  L  S  I  S  L  F  W  W  N  G  R  C  L  *  N  K  F  C  *  Y  K  F  *  V  C  L  C  *  S  Q  L  *  N  Y  L  G  V  K  I  *  G  D  E  S  R  N  T  R  F  S  K  K  E  R  *  P  V  C  K  Q  S  N  C  G  *  W  Q  V  T  C  S  S  C  M  V  H  V  F  Q  H  H  T  V  I  W  T  R  G  E  A  D  N  L  *  L  *  L  C  N  G  L  L  V  L  R  G  N  K  K  N  I  L  S  F  Q  F  *  L  P  *  I  D  N  Q  G  *  A  D  V  C  *  Q  F  F  L  S  F  P  F  M  L  N  I  Y  S  K  Y  A  R  N  P  S  V  N  S  V  L  V  E  I  I  H  I  V  V  E  R  Y  L  S  L  R  S  R  R  K  R  *  A  E  P  P  P  Q  I  E  K  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20515" stop="18968"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1545</number_coding_nucleotides>
                  <number_encoded_amino_acids>515</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKYSPLWLERFQFISAVRLGSDATSINVLPFRDAEGLSKYVAIGDDRGKVYAFSRNGEVLVEFQTSMSSPITAYVSYLSVYKNESVVVTGHENGGILMHRIWEVVVPDGDDRTSLRMETVGKFASPEIEEGGSSILSLEVHHVGRNRYILSTDSGGKLWVFRENGTVYGVTTPKSRPLAFLKQRLLFLTETGAGSLDLRTMKIRESECEGLNNSIAKSYVFDATERSKAYGFTSDGDLIHVLLLGDNMNFKCRVRSKRKLEMAEPLSFQAIKGYLLVANQDKVSLYNVSSLHYVRSGGPRQLFSVGHDEIVASFLSSQSLEPNDKSRKVIPLVASDQEKLVILGLGSGYLGIYRSNLPVFKNEFNTMLWTSPVLFFIIFLLGAYYFFAKKKEALTSWGPDDPFPSTGVTSGAPMGSSQGDRSYPDSSRNADLMDLRGSSLRGPSGRYVSPSRYSGGTAGAYRTNSADTNSRSASVDPNFRTTSELKFRGTNLETPGFPKRRDSLFVNSQIVDDGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="28209" PGL_stop="24449"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28209" e_stop="27803"/>
            <exon e_start="26957" e_stop="26598"/>
            <exon e_start="24789" e_stop="24449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.985" e_score="0.973"/>
          <exon-intron don_prob="0.925" acc_prob="0.655" e_score="0.997"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="28209" e_stop="27803" e_length="407"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.985">
            <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="26957" e_stop="26598" e_length="360"/>
          </exon>
          <intron i_serial="2" don_prob="0.925" acc_prob="0.655">
            <gDNA_intron_boundary i_start="26597" i_stop="24790" i_length="1808"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="24789" e_stop="24449" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28209" stop="27803"/>
              <exon start="26957" stop="26704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28128" stop="27803"/>
              <exon start="26957" stop="26700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28097" stop="27803"/>
              <exon start="26957" stop="26598"/>
              <exon start="24789" stop="24665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28090" stop="27803"/>
              <exon start="26957" stop="26598"/>
              <exon start="24789" stop="24661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28090" stop="27803"/>
              <exon start="26957" stop="26734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28083" stop="27803"/>
              <exon start="26957" stop="26630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28083" stop="27803"/>
              <exon start="26957" stop="26699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28083" stop="27803"/>
              <exon start="26957" stop="26731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28083" stop="27803"/>
              <exon start="26957" stop="26858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28083" stop="27803"/>
              <exon start="26957" stop="26859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28078" stop="27803"/>
              <exon start="26957" stop="26598"/>
              <exon start="24789" stop="24615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28072" stop="27803"/>
              <exon start="26957" stop="26598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28072" stop="27803"/>
              <exon start="26957" stop="26682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28064" stop="27803"/>
              <exon start="26957" stop="26735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28062" stop="27803"/>
              <exon start="26957" stop="26632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28054" stop="27803"/>
              <exon start="26957" stop="26654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28049" stop="27803"/>
              <exon start="26957" stop="26598"/>
              <exon start="24789" stop="24532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28034" stop="27803"/>
              <exon start="26957" stop="26633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28034" stop="27803"/>
              <exon start="26957" stop="26683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26954" stop="26598"/>
              <exon start="24789" stop="24539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257406" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26823" stop="26598"/>
              <exon start="24789" stop="24449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26750" stop="26598"/>
              <exon start="24789" stop="24454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232566" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26707" stop="26598"/>
              <exon start="24789" stop="24454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230185" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26673" stop="26598"/>
              <exon start="24789" stop="24454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238734" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26673" stop="26598"/>
              <exon start="24789" stop="24454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238937" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24755" stop="24454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232210" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTTACTTTATTGTATTTATGAAATTTTCCCCTTACGGGGCATGTTTGTCTTATCCATTCAGTTGAACAAATTAGAATGCCGGCCCCAAGTGTTAGAGCCATCCATCAGCAATTTCCTAATTCCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG : GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAG : ATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTTGTCAATCTTCCGATTTCAAGACACTTCCATGTTTTGATGCCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCAAAATGATGTATC</gDNA_template>
            <first_frame> K  V  T  L  L  Y  L  *  N  F  P  L  T  G  H  V  C  L  I  H  S  V  E  Q  I  R  M  P  A  P  S  V  R  A  I  H  Q  Q  F  P  N  S  *  T  S  N  L  L  L  L  I  P  L  A  R  E  S  K  K  I  E  Y  S  P  F  F  T  R  R  R  *  R  L  H  S  K  H  D  M  S  P  T  K  P  P  P  T  L  L  L  H  S  T  P  A  T  L  S  S  E  P  P  *  P  M  L  L  L  S  K  V  P  A  *  T  D  *  L  W  P  L  R  N  L  D  C  S  S  S  T  T  T  S  R  R  R :   T  L  G  F  N  L  *  T  Q  S  R  F  W  R  S  H  *  I  *  I  T  F  I  F  M  E  T  S  E  Q  Y  W  M  E  L  W  W  L  I  L  P  T  R  C  R  L  I  T  S  W  A  Q  E  V  V  N  *  S  T  H  M  S  T  E  E  S  L  L  S  S  P  S  M  I  Q  Q  R  M  R  G  T  S  W  Y  H  V  K  F  M  G  M  T  C  L  R  L  L  I  R  Q  Q  A  K  I  W  G  S  N  G  P  G  V  L  S  *  M  D  H  L  R :   F  V  H  L  S  V  C  L  R  N  A  K  S  Q  S  *  V  L  R  R  R  G  T  L  K  C  D  S  V  S  S  A  I  I  R  M  *  L  L  L  A  T  L  H  N  W  V  S  P  N  V  F  *  L  N  L  L  I  H  K  *  A  V  R  F  A  L  *  S  V  Y  G  Y  Q  H  E  Y  *  S  K  V  V  F  C  Q  S  S  D  F  K  T  L  P  C  F  D  A  L  T  L  P  E  L  M  I  *  G  S  I  K  M  M  Y  </first_frame>
            <second_frame>  K  L  L  Y  C  I  Y  E  I  F  P  L  R  G  M  F  V  L  S  I  Q  L  N  K  L  E  C  R  P  Q  V  L  E  P  S  I  S  N  F  L  I  P  K  P  Q  I  S  S  S  L  S  R  S  L  E  N  R  K  K  S  N  T  V  H  F  S  L  G  D  D  E  G  F  I  Q  S  T  I  *  A  R  Q  S  R  R  Q  R  Y  C  C  I  Q  R  R  R  P  *  A  P  S  L  H  D  R  C  Y  C  C  Q  R  S  Q  L  K  R  I  S  S  G  R  *  E  T  W  I  V  H  R  R  L  Q  R  P  E  E   : G  H  *  V  S  I  Y  E  L  N  Q  G  S  G  E  A  I  E  F  E  L  H  S  F  S  W  R  Q  A  N  N  I  G  W  N  F  G  G  *  F  C  Q  Q  G  V  G  *  S  R  H  G  L  R  K  L  *  I  K  V  H  I  C  P  R  R  N  H  Y  F  R  A  H  L  *  Y  S  K  E  C  V  G  L  H  G  I  T  *  S  L  W  G  *  R  V  *  G  Y  L  S  D  N  K  Q  K  F  G  A  R  M  V  Q  E  F  *  V  K  W  I  I  *   : D  L  C  I  S  L  F  A  *  G  T  Q  N  P  K  V  K  C  *  D  V  V  G  L  *  N  V  I  L  F  L  L  Q  *  F  G  C  N  Y  F  W  L  P  F  I  I  G  F  H  L  M  F  S  S  S  I  C  *  F  T  S  E  L  F  V  L  L  C  N  R  F  M  V  T  N  M  S  I  D  P  K  L  F  F  V  N  L  P  I  S  R  H  F  H  V  L  M  P  *  L  Y  L  N  *  *  F  K  A  P  S  K  *  C  I </second_frame>
            <third_frame>   S  Y  F  I  V  F  M  K  F  S  P  Y  G  A  C  L  S  Y  P  F  S  *  T  N  *  N  A  G  P  K  C  *  S  H  P  S  A  I  S  *  F  L  N  L  K  S  P  P  P  Y  P  A  R  *  R  I  E  K  N  R  I  Q  S  I  F  H  S  A  T  M  K  A  S  F  K  A  R  Y  E  P  D  K  A  A  A  N  A  T  V  A  F  N  A  G  D  L  K  L  R  A  S  M  T  D  A  T  V  V  K  G  P  S  L  N  G  L  A  L  A  V  E  K  P  G  L  F  I  V  D  Y  N  V  P  K  K  :  D  I  R  F  Q  F  M  N  S  I  K  V  L  E  K  P  L  N  L  N  Y  I  H  F  H  G  D  K  R  T  I  L  D  G  T  L  V  V  D  S  A  N  K  V  S  A  N  H  V  M  G  S  G  S  C  K  L  K  Y  T  Y  V  H  G  G  I  T  T  F  E  P  I  Y  D  T  A  K  N  A  W  D  F  M  V  S  R  K  V  Y  G  D  D  V  F  K  A  T  Y  Q  T  T  S  K  N  L  G  L  E  W  S  R  S  S  K  L  N  G  S  F  K  :  I  C  A  S  L  C  L  L  E  E  R  K  I  P  K  L  S  A  E  T  S  W  D  F  E  M  *  F  C  F  F  C  N  N  S  D  V  T  T  S  G  Y  P  S  *  L  G  F  T  *  C  F  L  A  Q  F  V  D  S  Q  V  S  C  S  F  C  F  V  I  G  L  W  L  P  T  *  V  L  I  Q  S  C  F  L  S  I  F  R  F  Q  D  T  S  M  F  *  C  P  D  F  T  *  I  N  D  L  R  L  H  Q  N  D  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28045" stop="27803"/>
                    <exon start="26957" stop="26598"/>
                    <exon start="24789" stop="24709"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIEKNRIQSIFHSATMKASFKARYEPDKAAANATVAFNAGDLKLRASMTDATVVKGPSLNGLALAVEKPGLFIVDYNVPKKDIRFQFMNSIKVLEKPLNLNYIHFHGDKRTILDGTLVVDSANKVSANHVMGSGSCKLKYTYVHGGITTFEPIYDTAKNAWDFMVSRKVYGDDVFKATYQTTSKNLGLEWSRSSKLNGSFKICASLCLLEERKIPKLSAETSWDFEM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28085" e_stop="27661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="28085" e_stop="27661" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28085" stop="27661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200013" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTA</gDNA_template>
            <first_frame> P  K  P  Q  I  S  S  S  L  S  R  S  L  E  N  R  K  K  S  N  T  V  H  F  S  L  G  D  D  E  G  F  I  Q  S  T  I  *  A  R  Q  S  R  R  Q  R  Y  C  C  I  Q  R  R  R  P  *  A  P  S  L  H  D  R  C  Y  C  C  Q  R  S  Q  L  K  R  I  S  S  G  R  *  E  T  W  I  V  H  R  R  L  Q  R  P  E  E  G  L  D  S  I  L  H  M  S  V  L  L  I  T  V  D  I  V  K  N  V  I  V  K  L  N  V  I  Y  T  H  D  L  H  R  L  F  *  L  V  R  N  *  D  L  V  G   </first_frame>
            <second_frame>  L  N  L  K  S  P  P  P  Y  P  A  R  *  R  I  E  K  N  R  I  Q  S  I  F  H  S  A  T  M  K  A  S  F  K  A  R  Y  E  P  D  K  A  A  A  N  A  T  V  A  F  N  A  G  D  L  K  L  R  A  S  M  T  D  A  T  V  V  K  G  P  S  L  N  G  L  A  L  A  V  E  K  P  G  L  F  I  V  D  Y  N  V  P  K  K  V  W  T  R  F  C  I  C  Q  F  Y  *  S  P  S  I  *  *  K  M  L  *  L  N  *  M  *  Y  I  H  M  I  Y  I  D  Y  S  N  *  F  G  I  E  I  *  L  V  </second_frame>
            <third_frame>   *  T  S  N  L  L  L  L  I  P  L  A  R  E  S  K  K  I  E  Y  S  P  F  F  T  R  R  R  *  R  L  H  S  K  H  D  M  S  P  T  K  P  P  P  T  L  L  L  H  S  T  P  A  T  L  S  S  E  P  P  *  P  M  L  L  L  S  K  V  P  A  *  T  D  *  L  W  P  L  R  N  L  D  C  S  S  S  T  T  T  S  R  R  R  S  G  L  D  S  A  Y  V  S  F  T  N  H  R  R  Y  S  E  K  C  Y  S  *  I  E  C  N  I  Y  T  *  F  T  *  T  I  L  T  S  S  E  L  R  F  S  W  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28045" stop="27767"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIEKNRIQSIFHSATMKASFKARYEPDKAAANATVAFNAGDLKLRASMTDATVVKGPSLNGLALAVEKPGLFIVDYNVPKKVWTRFCICQFY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="42384" PGL_stop="43927"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42384" e_stop="42886"/>
            <exon e_start="43887" e_stop="43927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.352" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="42384" e_stop="42886" e_length="503"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.352">
            <gDNA_intron_boundary i_start="42887" i_stop="43886" i_length="1000"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43887" e_stop="43927" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42384" stop="42886"/>
              <exon start="43887" stop="43927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCAAAGAAACACCTCTCTGGAAAAAAATAAAAAAAGTGACAGAGAAATATCCATTTCTCCCCAAATTTCTCTCAAAATCATTTGCTCCGTTTAATCCTCTCTCAAAGGAGGAAAAAAAGGAAACACCAATGTTTTAGTTCTTTTTCCCAACAATCTTCCTCTTTCTGTTTATATAATTTTTTTTGAAGAATAGTGTTGTATTTTTTACATCATGAGAAAATTGAGCCCTAATTTGGACAAAGAAGATGGATTGGATACAGTTTTGGAGGTTCCTCTTCCAGAAGAAATGTTTAGCAAAACGGATGGCAGCAGTGCAGCAATCAGGTGGAAGAAGATGCTAAATCTAATACGAGCTGATAAATTGCCAAATCGATCGAAGGCGGTTTCTTCTGGAAATAATGATCAATTTATGTTCTTGTTGAAAATTGTTGGATCTGCTCTTATACCTTTTCAGGTTCAATTGGATCATGCAATTAACTTGCCTGTTAGAGATGGTTGCATT : AAAGCTTCTTCTGCAAAATACATAGTACAACAATACCTAGC</gDNA_template>
            <first_frame> T  K  E  T  P  L  W  K  K  I  K  K  V  T  E  K  Y  P  F  L  P  K  F  L  S  K  S  F  A  P  F  N  P  L  S  K  E  E  K  K  E  T  P  M  F  *  F  F  F  P  T  I  F  L  F  L  F  I  *  F  F  L  K  N  S  V  V  F  F  T  S  *  E  N  *  A  L  I  W  T  K  K  M  D  W  I  Q  F  W  R  F  L  F  Q  K  K  C  L  A  K  R  M  A  A  V  Q  Q  S  G  G  R  R  C  *  I  *  Y  E  L  I  N  C  Q  I  D  R  R  R  F  L  L  E  I  M  I  N  L  C  S  C  *  K  L  L  D  L  L  L  Y  L  F  R  F  N  W  I  M  Q  L  T  C  L  L  E  M  V  A  L :   K  L  L  L  Q  N  T  *  Y  N  N  T  *  </first_frame>
            <second_frame>  P  K  K  H  L  S  G  K  K  *  K  K  *  Q  R  N  I  H  F  S  P  N  F  S  Q  N  H  L  L  R  L  I  L  S  Q  R  R  K  K  R  K  H  Q  C  F  S  S  F  S  Q  Q  S  S  S  F  C  L  Y  N  F  F  *  R  I  V  L  Y  F  L  H  H  E  K  I  E  P  *  F  G  Q  R  R  W  I  G  Y  S  F  G  G  S  S  S  R  R  N  V  *  Q  N  G  W  Q  Q  C  S  N  Q  V  E  E  D  A  K  S  N  T  S  *  *  I  A  K  S  I  E  G  G  F  F  W  K  *  *  S  I  Y  V  L  V  E  N  C  W  I  C  S  Y  T  F  S  G  S  I  G  S  C  N  *  L  A  C  *  R  W  L  H   : *  S  F  F  C  K  I  H  S  T  T  I  P  S </second_frame>
            <third_frame>   Q  R  N  T  S  L  E  K  N  K  K  S  D  R  E  I  S  I  S  P  Q  I  S  L  K  I  I  C  S  V  *  S  S  L  K  G  G  K  K  G  N  T  N  V  L  V  L  F  P  N  N  L  P  L  S  V  Y  I  I  F  F  E  E  *  C  C  I  F  Y  I  M  R  K  L  S  P  N  L  D  K  E  D  G  L  D  T  V  L  E  V  P  L  P  E  E  M  F  S  K  T  D  G  S  S  A  A  I  R  W  K  K  M  L  N  L  I  R  A  D  K  L  P  N  R  S  K  A  V  S  S  G  N  N  D  Q  F  M  F  L  L  K  I  V  G  S  A  L  I  P  F  Q  V  Q  L  D  H  A  I  N  L  P  V  R  D  G  C  I  :  K  A  S  S  A  K  Y  I  V  Q  Q  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42578" stop="42886"/>
                    <exon start="43887" stop="43925"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CCIFYIMRKLSPNLDKEDGLDTVLEVPLPEEMFSKTDGSSAAIRWKKMLNLIRADKLPNRSKAVSSGNNDQFMFLLKIVGSALIPFQVQLDHAINLPVRDGCIKASSAKYIVQQYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="51474" PGL_stop="54370"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51474" e_stop="51895"/>
            <exon e_start="52730" e_stop="52956"/>
            <exon e_start="54024" e_stop="54370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="51474" e_stop="51895" e_length="422"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51896" i_stop="52729" i_length="834"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52730" e_stop="52956" e_length="227"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="52957" i_stop="54023" i_length="1067"/>
          </intron>
          <exon e_serial="3" e_score="0.923">
            <gDNA_exon_boundary e_start="54024" e_stop="54370" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51474" stop="51895"/>
              <exon start="52730" stop="52956"/>
              <exon start="54024" stop="54359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51474" stop="51895"/>
              <exon start="52730" stop="52956"/>
              <exon start="54024" stop="54146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51474" stop="51895"/>
              <exon start="52730" stop="52859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51481" stop="51895"/>
              <exon start="52730" stop="52956"/>
              <exon start="54024" stop="54215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51680" stop="51895"/>
              <exon start="52730" stop="52956"/>
              <exon start="54024" stop="54370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546230" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52730" stop="52956"/>
              <exon start="54024" stop="54248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52824" stop="52956"/>
              <exon start="54024" stop="54232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287522" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCTTCTTGATTCTTCAAAAATAAAAAATCAAAAAAATTCTTACTCTCAGTTTTGCTTATAAAGATCTAATCTTTTCTGAATTGGGTGAAAGAAAAATCATGAGAATATACCAAGAAATGAAAGATGAAGAAGCTCAATCAAGAATTAGTACAAATACAGTAACAACAGTTTCTTCAGTTTCAGCAGTAGCAACACCAGCAGCAGCAGCAGCAACATCAACTGTAAAAAAAGATCAAGGATTTAGTGGGGTTTTTGGTAAAGGTAAATACAAATTGTGGGTATTGGCTGCAATTCTTTTGCTAGCTTTTTGGTCTATGTTTACTGGCTCACTTACTCTTAGTCTCAACTGGTCTACTTCAAATCTCAGCCGTTTATCTCATGCTTCTGATTTCACGATCCATGAAGATCTTGATATTCTG : GTATTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAGCAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCATACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAG : AGAAGCAGAGAAAGAAAAAGGATCTAAAAGTCCGGCGAAGACGATAACTACAAAGAAACAGAAATGATGATGAGGGAAATGGTTGTGTTGAGAATTAAGATGGAAGGTAGATGCAACAAAGTTGTGGTTGAACTCATTCTTCTTGGTAGTCAAAGTTCTTTACTTGTATTTATACTACTACTACTAGAGCTTTATTTAGATATATCATAAGATCAAAATTTAGTGAAGGCAAAGGTCTTCCTTTTGATTGTTTCCACTTAATAATATGCCATTTCAAAACCAGCTGGTTAATTATGTTGTTAACTAAAATCGGTTATTCTTATTTGGTTGATCCAAATCATATAGTA</gDNA_template>
            <first_frame> S  S  S  *  F  F  K  N  K  K  S  K  K  F  L  L  S  V  L  L  I  K  I  *  S  F  L  N  W  V  K  E  K  S  *  E  Y  T  K  K  *  K  M  K  K  L  N  Q  E  L  V  Q  I  Q  *  Q  Q  F  L  Q  F  Q  Q  *  Q  H  Q  Q  Q  Q  Q  Q  H  Q  L  *  K  K  I  K  D  L  V  G  F  L  V  K  V  N  T  N  C  G  Y  W  L  Q  F  F  C  *  L  F  G  L  C  L  L  A  H  L  L  L  V  S  T  G  L  L  Q  I  S  A  V  Y  L  M  L  L  I  S  R  S  M  K  I  L  I  F  W :   Y  W  R  K  E  R  R  W  *  N  I  C  G  M  C  T  H  R  I  A  G  S  G  C  L  S  S  G  K  T  L  S  K  Q  H  T  *  I  *  R  V  I  H  Q  L  P  E  T  L  L  C  R  R  L  P  R  C  P  S  A  P  L  P  L  M  N  H  L  P  T  R  N  Q  N  Q   : E  K  Q  R  K  K  K  D  L  K  V  R  R  R  R  *  L  Q  R  N  R  N  D  D  E  G  N  G  C  V  E  N  *  D  G  R  *  M  Q  Q  S  C  G  *  T  H  S  S  W  *  S  K  F  F  T  C  I  Y  T  T  T  T  R  A  L  F  R  Y  I  I  R  S  K  F  S  E  G  K  G  L  P  F  D  C  F  H  L  I  I  C  H  F  K  T  S  W  L  I  M  L  L  T  K  I  G  Y  S  Y  L  V  D  P  N  H  I  V </first_frame>
            <second_frame>  H  L  L  D  S  S  K  I  K  N  Q  K  N  S  Y  S  Q  F  C  L  *  R  S  N  L  F  *  I  G  *  K  K  N  H  E  N  I  P  R  N  E  R  *  R  S  S  I  K  N  *  Y  K  Y  S  N  N  S  F  F  S  F  S  S  S  N  T  S  S  S  S  S  N  I  N  C  K  K  R  S  R  I  *  W  G  F  W  *  R  *  I  Q  I  V  G  I  G  C  N  S  F  A  S  F  L  V  Y  V  Y  W  L  T  Y  S  *  S  Q  L  V  Y  F  K  S  Q  P  F  I  S  C  F  *  F  H  D  P  *  R  S  *  Y  S   : G  I  G  G  K  R  E  D  G  K  T  Y  V  G  C  V  H  T  E  *  Q  D  Q  V  A  *  V  L  A  R  R  F  P  S  S  I  P  R  F  D  E  *  F  T  S  Y  P  R  H  C  C  V  G  D  C  Q  D  V  P  P  L  H  F  H  L  *  I  T  F  Q  Q  E  T  R  T  K  :  R  S  R  E  R  K  R  I  *  K  S  G  E  D  D  N  Y  K  E  T  E  M  M  M  R  E  M  V  V  L  R  I  K  M  E  G  R  C  N  K  V  V  V  E  L  I  L  L  G  S  Q  S  S  L  L  V  F  I  L  L  L  L  E  L  Y  L  D  I  S  *  D  Q  N  L  V  K  A  K  V  F  L  L  I  V  S  T  *  *  Y  A  I  S  K  P  A  G  *  L  C  C  *  L  K  S  V  I  L  I  W  L  I  Q  I  I  *   </second_frame>
            <third_frame>   I  F  L  I  L  Q  K  *  K  I  K  K  I  L  T  L  S  F  A  Y  K  D  L  I  F  S  E  L  G  E  R  K  I  M  R  I  Y  Q  E  M  K  D  E  E  A  Q  S  R  I  S  T  N  T  V  T  T  V  S  S  V  S  A  V  A  T  P  A  A  A  A  A  T  S  T  V  K  K  D  Q  G  F  S  G  V  F  G  K  G  K  Y  K  L  W  V  L  A  A  I  L  L  L  A  F  W  S  M  F  T  G  S  L  T  L  S  L  N  W  S  T  S  N  L  S  R  L  S  H  A  S  D  F  T  I  H  E  D  L  D  I  L  :  V  L  E  E  R  E  K  M  V  K  H  M  W  D  V  Y  T  Q  N  S  R  I  R  L  P  K  F  W  Q  D  A  F  Q  A  A  Y  L  D  L  T  S  D  S  P  A  T  R  D  T  A  V  S  E  I  A  K  M  S  L  R  S  T  S  T  Y  E  S  P  S  N  K  K  P  E  P  R :   E  A  E  K  E  K  G  S  K  S  P  A  K  T  I  T  T  K  K  Q  K  *  *  *  G  K  W  L  C  *  E  L  R  W  K  V  D  A  T  K  L  W  L  N  S  F  F  L  V  V  K  V  L  Y  L  Y  L  Y  Y  Y  Y  *  S  F  I  *  I  Y  H  K  I  K  I  *  *  R  Q  R  S  S  F  *  L  F  P  L  N  N  M  P  F  Q  N  Q  L  V  N  Y  V  V  N  *  N  R  L  F  L  F  G  *  S  K  S  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51500" stop="51895"/>
                    <exon start="52730" stop="52956"/>
                    <exon start="54024" stop="54090"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIKKILTLSFAYKDLIFSELGERKIMRIYQEMKDEEAQSRISTNTVTTVSSVSAVATPAAAAATSTVKKDQGFSGVFGKGKYKLWVLAAILLLAFWSMFTGSLTLSLNWSTSNLSRLSHASDFTIHEDLDILVLEEREKMVKHMWDVYTQNSRIRLPKFWQDAFQAAYLDLTSDSPATRDTAVSEIAKMSLRSTSTYESPSNKKPEPREAEKEKGSKSPAKTITTKKQK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54173" stop="54370"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKFFTCIYTTTTRALFRYIIRSKFSEGKGLPFDCFHLIICHFKTSWLIMLLTKIGYSYLVDPNHIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="55692" PGL_stop="56139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55692" e_stop="56139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="55692" e_stop="56139" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55692" stop="56139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218557" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGTTTAATTCTGATTGAATCTGATTTAGAAGACCTAAAGTCAGAAATAGTATCACAAAAATTGCTTTGAGCAGATTAAATAGTACTGCTTCTGTTGCTGGATAATCCTAAAGCATTTACAAACATTCTCAAACACAAAGTATGTACCCTCCCTCATTCTACCTAATCTTCTACAGTCTGAATCTCTCCCATCATTATCCGGTTGCTAACCACATTGAAGCCCAACTCTGAAAGGTTAACCTTCTTGCCCTTCTTACCCTTCTTCTTTCCTCCCTTTGAGGCCCAATCCTGAACACTTGAGTTGCCCTGGTCAAAGCCAACACTGTTAGAAGTCACATTTTTGGCACTTGCACCAGTGACCTTACGATCATTACGACCCTGGAAGGCCATGTCAAAAACATCCGCAGGCAAAAAGTCTTTGTAGTTGAGGAACTTGTCAATGAATTC</gDNA_template>
            <first_frame> *  V  *  F  *  L  N  L  I  *  K  T  *  S  Q  K  *  Y  H  K  N  C  F  E  Q  I  K  *  Y  C  F  C  C  W  I  I  L  K  H  L  Q  T  F  S  N  T  K  Y  V  P  S  L  I  L  P  N  L  L  Q  S  E  S  L  P  S  L  S  G  C  *  P  H  *  S  P  T  L  K  G  *  P  S  C  P  S  Y  P  S  S  F  L  P  L  R  P  N  P  E  H  L  S  C  P  G  Q  S  Q  H  C  *  K  S  H  F  W  H  L  H  Q  *  P  Y  D  H  Y  D  P  G  R  P  C  Q  K  H  P  Q  A  K  S  L  C  S  *  G  T  C  Q  *  I  </first_frame>
            <second_frame>  R  F  N  S  D  *  I  *  F  R  R  P  K  V  R  N  S  I  T  K  I  A  L  S  R  L  N  S  T  A  S  V  A  G  *  S  *  S  I  Y  K  H  S  Q  T  Q  S  M  Y  P  P  S  F  Y  L  I  F  Y  S  L  N  L  S  H  H  Y  P  V  A  N  H  I  E  A  Q  L  *  K  V  N  L  L  A  L  L  T  L  L  L  S  S  L  *  G  P  I  L  N  T  *  V  A  L  V  K  A  N  T  V  R  S  H  I  F  G  T  C  T  S  D  L  T  I  I  T  T  L  E  G  H  V  K  N  I  R  R  Q  K  V  F  V  V  E  E  L  V  N  E  F </second_frame>
            <third_frame>   G  L  I  L  I  E  S  D  L  E  D  L  K  S  E  I  V  S  Q  K  L  L  *  A  D  *  I  V  L  L  L  L  L  D  N  P  K  A  F  T  N  I  L  K  H  K  V  C  T  L  P  H  S  T  *  S  S  T  V  *  I  S  P  I  I  I  R  L  L  T  T  L  K  P  N  S  E  R  L  T  F  L  P  F  L  P  F  F  F  P  P  F  E  A  Q  S  *  T  L  E  L  P  W  S  K  P  T  L  L  E  V  T  F  L  A  L  A  P  V  T  L  R  S  L  R  P  W  K  A  M  S  K  T  S  A  G  K  K  S  L  *  L  R  N  L  S  M  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0075G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="57926" PGL_stop="55758"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57926" e_stop="56893"/>
            <exon e_start="56803" e_stop="56610"/>
            <exon e_start="56505" e_stop="56446"/>
            <exon e_start="56231" e_stop="55758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.138" acc_prob="0.994" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.949" e_score="0.995"/>
          <exon-intron don_prob="0.997" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="57926" e_stop="56893" e_length="1034"/>
          </exon>
          <intron i_serial="1" don_prob="0.138" acc_prob="0.994">
            <gDNA_intron_boundary i_start="56892" i_stop="56804" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="56803" e_stop="56610" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.949">
            <gDNA_intron_boundary i_start="56609" i_stop="56506" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56505" e_stop="56446" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.975">
            <gDNA_intron_boundary i_start="56445" i_stop="56232" i_length="214"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="56231" e_stop="55758" e_length="474"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57926" stop="57134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57554" stop="56893"/>
              <exon start="56803" stop="56797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57527" stop="56893"/>
              <exon start="56803" stop="56792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57513" stop="57131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57406" stop="56893"/>
              <exon start="56803" stop="56640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57307" stop="56893"/>
              <exon start="56803" stop="56610"/>
              <exon start="56505" stop="56446"/>
              <exon start="56231" stop="56025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57254" stop="56893"/>
              <exon start="56803" stop="56610"/>
              <exon start="56505" stop="56446"/>
              <exon start="56231" stop="56085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56620" stop="56610"/>
              <exon start="56505" stop="56446"/>
              <exon start="56231" stop="55758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370205" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAGGTCCAGGAAGAAGAGAGAGCAGACCCGAAGTTGCTATTGCTGATGTTGTGGATGAATATCCAGGGCAAAACCCACCAATTTCACAGTCCAACACCCAAGTACAGTCTGGACAGCGAGCTTGGAAACCTGCTCCTGGTTTCAAGCCGAAGTCATTGTTGGAAATTCAAGAGGAAGAGCAGAGGAGAGCACAAGCAGAAATAACTACTACAGAGGTCGCCACATCTCTGAGCTCCTTAAGTGTGTCTACTCCATGGGCTGGATTTGTTACTAATTCAGATCATAAATTAGTTAGAGATACTCAGCAAGATGCTGCCAGCACTGATTTGAATATGAATAACTCAGATGTTTCTCTCGACCAGAAGACTAAGAAAAGTCAATTGCATGACGTACTGGCTGAGAACACTTTGGCCAAGTCAAGCGATAGAGAGAGAGATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATGACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAGTCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTTCATCATGGTCTAGTTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTCAAAGCA : ATCTGAATATCCTCAGCTTGGAAGTCAAGGCAGTTGGGGAAGCAAGACCACACCAGTGAAAGGAAGTCCTGGTGGTTCATTGAGCAGGCAAAAGTCTGTCAGCAGTAAGCCTGCAGAACGTCTACTATCCTCATCTCCTGCGTCAGGTCACTCGTCCCTGAAAGGGAAGAAGGATGCTTTGACAAAGCATTCAG : AAGCAATGGATTTCAGAGAATGGTGTGAGAATGAATGTGATAGGCTCATTGGTACAAGAG : ATACCAGCTTTCTGGACTTCTGTTTCAAGCAATCCAAGTCAGAGGCTGAAATGCTTCTGATAGAGAATCTTGGCTCTTATGATCCTGATCATGAATTCATTGACAAGTTCCTCAACTACAAAGACTTTTTGCCTGCGGATGTTTTTGACATGGCCTTCCAGGGTCGTAATGATCGTAAGGTCACTGGTGCAAGTGCCAAAAATGTGACTTCTAACAGTGTTGGCTTTGACCAGGGCAACTCAAGTGTTCAGGATTGGGCCTCAAAGGGAGGAAAGAAGAAGGGTAAGAAGGGCAAGAAGGTTAACCTTTCAGAGTTGGGCTTCAATGTGGTTAGCAACCGGATAATGATGGGAGAGATTCAGACTGTAGAAGATTAGGTAGAATGAGGGAGGGTACATACTTTGTGTTTGAGAATGTTTGTAAATGCTTTAGGATTATCCAGCAACAGAAGCAGTACTATTTAATCTGCTCAAA</gDNA_template>
            <first_frame> V  G  P  G  R  R  E  S  R  P  E  V  A  I  A  D  V  V  D  E  Y  P  G  Q  N  P  P  I  S  Q  S  N  T  Q  V  Q  S  G  Q  R  A  W  K  P  A  P  G  F  K  P  K  S  L  L  E  I  Q  E  E  E  Q  R  R  A  Q  A  E  I  T  T  T  E  V  A  T  S  L  S  S  L  S  V  S  T  P  W  A  G  F  V  T  N  S  D  H  K  L  V  R  D  T  Q  Q  D  A  A  S  T  D  L  N  M  N  N  S  D  V  S  L  D  Q  K  T  K  K  S  Q  L  H  D  V  L  A  E  N  T  L  A  K  S  S  D  R  E  R  D  F  P  D  M  T  S  V  Q  P  S  V  S  V  N  D  D  D  N  F  I  E  A  K  E  T  K  K  S  R  K  R  S  A  K  S  K  G  A  G  A  K  A  S  M  P  T  A  A  S  E  V  S  V  A  S  S  P  I  D  K  V  K  S  L  R  Q  V  Q  P  D  Q  E  V  L  P  A  I  P  S  G  P  S  L  G  D  F  V  V  W  K  G  E  S  A  S  S  A  T  I  P  V  P  A  W  S  T  D  S  G  K  P  S  K  P  T  S  L  R  D  I  L  K  E  Q  E  K  K  V  T  S  G  Q  Q  H  I  P  V  P  T  Q  K  S  V  P  N  P  P  A  R  V  G  G  S  S  W  S  S  S  S  P  A  K  A  A  S  P  I  Q  I  N  S  Q  A  G  A  Y  S  K  N  K  V  E  D  D  L  F  W  G  P  I  D  H  P  K  Q  E  S  K  Q :   S  E  Y  P  Q  L  G  S  Q  G  S  W  G  S  K  T  T  P  V  K  G  S  P  G  G  S  L  S  R  Q  K  S  V  S  S  K  P  A  E  R  L  L  S  S  S  P  A  S  G  H  S  S  L  K  G  K  K  D  A  L  T  K  H  S   : E  A  M  D  F  R  E  W  C  E  N  E  C  D  R  L  I  G  T  R   : D  T  S  F  L  D  F  C  F  K  Q  S  K  S  E  A  E  M  L  L  I  E  N  L  G  S  Y  D  P  D  H  E  F  I  D  K  F  L  N  Y  K  D  F  L  P  A  D  V  F  D  M  A  F  Q  G  R  N  D  R  K  V  T  G  A  S  A  K  N  V  T  S  N  S  V  G  F  D  Q  G  N  S  S  V  Q  D  W  A  S  K  G  G  K  K  K  G  K  K  G  K  K  V  N  L  S  E  L  G  F  N  V  V  S  N  R  I  M  M  G  E  I  Q  T  V  E  D  *  V  E  *  G  R  V  H  T  L  C  L  R  M  F  V  N  A  L  G  L  S  S  N  R  S  S  T  I  *  S  A  Q  </first_frame>
            <second_frame>  *  V  Q  E  E  E  R  A  D  P  K  L  L  L  L  M  L  W  M  N  I  Q  G  K  T  H  Q  F  H  S  P  T  P  K  Y  S  L  D  S  E  L  G  N  L  L  L  V  S  S  R  S  H  C  W  K  F  K  R  K  S  R  G  E  H  K  Q  K  *  L  L  Q  R  S  P  H  L  *  A  P  *  V  C  L  L  H  G  L  D  L  L  L  I  Q  I  I  N  *  L  E  I  L  S  K  M  L  P  A  L  I  *  I  *  I  T  Q  M  F  L  S  T  R  R  L  R  K  V  N  C  M  T  Y  W  L  R  T  L  W  P  S  Q  A  I  E  R  E  I  F  L  I  *  H  L  F  N  L  P  C  L  S  M  M  M  T  T  L  L  K  L  K  K  L  K  R  A  A  K  D  L  Q  N  L  R  E  Q  E  Q  R  P  Q  C  P  Q  L  L  P  R  C  L  L  H  Q  V  L  L  T  K  S  K  A  C  V  R  Y  N  L  T  R  K  Y  Y  L  L  Y  H  L  V  L  R  *  E  I  L  L  F  G  R  V  S  L  Q  V  L  L  L  F  L  F  Q  H  G  P  P  T  L  G  N  P  Q  N  P  H  P  C  G  T  S  *  R  N  K  K  R  R  L  L  L  D  S  S  I  Y  Q  C  Q  H  R  N  L  C  Q  I  H  L  R  E  *  V  V  H  H  G  L  V  H  R  P  P  R  L  H  L  L  F  R  L  T  H  K  L  A  L  I  Q  K  I  K  W  R  T  I  C  F  G  A  Q  *  I  I  P  S  K  S  Q  S   : N  L  N  I  L  S  L  E  V  K  A  V  G  E  A  R  P  H  Q  *  K  E  V  L  V  V  H  *  A  G  K  S  L  S  A  V  S  L  Q  N  V  Y  Y  P  H  L  L  R  Q  V  T  R  P  *  K  G  R  R  M  L  *  Q  S  I  Q  :  K  Q  W  I  S  E  N  G  V  R  M  N  V  I  G  S  L  V  Q  E  :  I  P  A  F  W  T  S  V  S  S  N  P  S  Q  R  L  K  C  F  *  *  R  I  L  A  L  M  I  L  I  M  N  S  L  T  S  S  S  T  T  K  T  F  C  L  R  M  F  L  T  W  P  S  R  V  V  M  I  V  R  S  L  V  Q  V  P  K  M  *  L  L  T  V  L  A  L  T  R  A  T  Q  V  F  R  I  G  P  Q  R  E  E  R  R  R  V  R  R  A  R  R  L  T  F  Q  S  W  A  S  M  W  L  A  T  G  *  *  W  E  R  F  R  L  *  K  I  R  *  N  E  G  G  Y  I  L  C  V  *  E  C  L  *  M  L  *  D  Y  P  A  T  E  A  V  L  F  N  L  L  K </second_frame>
            <third_frame>   R  S  R  K  K  R  E  Q  T  R  S  C  Y  C  *  C  C  G  *  I  S  R  A  K  P  T  N  F  T  V  Q  H  P  S  T  V  W  T  A  S  L  E  T  C  S  W  F  Q  A  E  V  I  V  G  N  S  R  G  R  A  E  E  S  T  S  R  N  N  Y  Y  R  G  R  H  I  S  E  L  L  K  C  V  Y  S  M  G  W  I  C  Y  *  F  R  S  *  I  S  *  R  Y  S  A  R  C  C  Q  H  *  F  E  Y  E  *  L  R  C  F  S  R  P  E  D  *  E  K  S  I  A  *  R  T  G  *  E  H  F  G  Q  V  K  R  *  R  E  R  F  S  *  Y  D  I  C  S  T  F  R  V  C  Q  *  *  *  Q  L  Y  *  S  *  R  N  *  K  E  P  Q  K  I  C  K  I  *  G  S  R  S  K  G  L  N  A  H  S  C  F  R  G  V  C  C  I  K  S  Y  *  Q  S  Q  K  L  A  S  G  T  T  *  P  G  S  I  T  C  Y  T  I  W  S  F  A  R  R  F  C  C  L  E  G  *  V  C  K  F  C  Y  Y  S  C  S  S  M  V  H  R  L  W  E  T  L  K  T  H  I  L  A  G  H  P  K  G  T  R  K  E  G  Y  F  W  T  A  A  Y  T  S  A  N  T  E  I  C  A  K  S  T  C  E  S  R  W  F  I  M  V  *  F  I  A  R  Q  G  C  I  S  Y  S  D  *  L  T  S  W  R  L  F  K  K  *  S  G  G  R  F  V  L  G  P  N  R  S  S  Q  A  R  V  K  A  :  I  *  I  S  S  A  W  K  S  R  Q  L  G  K  Q  D  H  T  S  E  R  K  S  W  W  F  I  E  Q  A  K  V  C  Q  Q  *  A  C  R  T  S  T  I  L  I  S  C  V  R  S  L  V  P  E  R  E  E  G  C  F  D  K  A  F  R :   S  N  G  F  Q  R  M  V  *  E  *  M  *  *  A  H  W  Y  K  R :   Y  Q  L  S  G  L  L  F  Q  A  I  Q  V  R  G  *  N  A  S  D  R  E  S  W  L  L  *  S  *  S  *  I  H  *  Q  V  P  Q  L  Q  R  L  F  A  C  G  C  F  *  H  G  L  P  G  S  *  *  S  *  G  H  W  C  K  C  Q  K  C  D  F  *  Q  C  W  L  *  P  G  Q  L  K  C  S  G  L  G  L  K  G  R  K  E  E  G  *  E  G  Q  E  G  *  P  F  R  V  G  L  Q  C  G  *  Q  P  D  N  D  G  R  D  S  D  C  R  R  L  G  R  M  R  E  G  T  Y  F  V  F  E  N  V  C  K  C  F  R  I  I  Q  Q  Q  K  Q  Y  Y  L  I  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57926" stop="56893"/>
                    <exon start="56803" stop="56610"/>
                    <exon start="56505" stop="56446"/>
                    <exon start="56231" stop="55855"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1662</number_coding_nucleotides>
                  <number_encoded_amino_acids>554</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGPGRRESRPEVAIADVVDEYPGQNPPISQSNTQVQSGQRAWKPAPGFKPKSLLEIQEEEQRRAQAEITTTEVATSLSSLSVSTPWAGFVTNSDHKLVRDTQQDAASTDLNMNNSDVSLDQKTKKSQLHDVLAENTLAKSSDRERDFPDMTSVQPSVSVNDDDNFIEAKETKKSRKRSAKSKGAGAKASMPTAASEVSVASSPIDKVKSLRQVQPDQEVLPAIPSGPSLGDFVVWKGESASSATIPVPAWSTDSGKPSKPTSLRDILKEQEKKVTSGQQHIPVPTQKSVPNPPARVGGSSWSSSSPAKAASPIQINSQAGAYSKNKVEDDLFWGPIDHPKQESKQSEYPQLGSQGSWGSKTTPVKGSPGGSLSRQKSVSSKPAERLLSSSPASGHSSLKGKKDALTKHSEAMDFREWCENECDRLIGTRDTSFLDFCFKQSKSEAEMLLIENLGSYDPDHEFIDKFLNYKDFLPADVFDMAFQGRNDRKVTGASAKNVTSNSVGFDQGNSSVQDWASKGGKKKGKKGKKVNLSELGFNVVSNRIMMGEIQTVED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="61498" PGL_stop="60509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61498" e_stop="61198"/>
            <exon e_start="61095" e_stop="60975"/>
            <exon e_start="60857" e_stop="60509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61498" e_stop="61198" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61197" i_stop="61096" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61095" e_stop="60975" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.931" acc_prob="0.994">
            <gDNA_intron_boundary i_start="60974" i_stop="60858" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="60857" e_stop="60509" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61498" stop="61198"/>
              <exon start="61095" stop="60975"/>
              <exon start="60857" stop="60536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379887" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61403" stop="61198"/>
              <exon start="61095" stop="60975"/>
              <exon start="60857" stop="60509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395682" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGGGGACGTGAAGATGGTGCTACCCCTACTTTTTCTCTTGGTAGGGGTCGTGCTGTCTCTGGAGGGAGCCCCATGATTAAAGGCTCTCTTCATGTGCAGTCAGTCGGGGCATTCTCGGAGAAAGCTGAAAGTGTTTCCTCTCCTATACGATACAGTCGGTTAAAAATGCTTGATGTGTACAGAGGGACGGACATGCAGTCCTGTAGCAACTTTTCGGATGTGATTGTGCAAGTTCCTTCACTTACACAAGATGAACCTCTGGAGCCTCTCGCATTATGTGCACCCAGTCAGGAGGAATTG : GCTATCTTGAAGGGAATTGACAAGGGGGATGTTCTGAGTAGTGGAGCTCCACAGACTACTAAAGATGGAACATTAGCTCGAAACTCAACTGAACATACTCAACCAAGGCGCGGCAAACTAG : GTAGCAGAGAAGATTTATCTTTTGATGATTCAAGAGAAGAAAGTACCGACAATGCCAAAGGTGGTTATTTGAATCACCCAGAAGGTTCTTTCTTCGAAAAGTTACATTCTTATGGGTCCAGTTCTAAATCTGAGACTAAGCAGAGTTTAGAGAGATTTTCTGATCCCAAATTAGGTGCTGTAGGTATATGTGTGGATATCTGTCTCTTGATGTACTATGCAGTTCATCAGGGTGCAGTAACAAAAACATATCTTAAATGTTACTAAGGTTTGGATGTCCTGTTAAAATTTCAAGAACCAAATACATAAGCTAGTCTGTTGCTTATACATATCTTTCAATAAGCAGAGTT</gDNA_template>
            <first_frame> P  G  T  *  R  W  C  Y  P  Y  F  F  S  W  *  G  S  C  C  L  W  R  E  P  H  D  *  R  L  S  S  C  A  V  S  R  G  I  L  G  E  S  *  K  C  F  L  S  Y  T  I  Q  S  V  K  N  A  *  C  V  Q  R  D  G  H  A  V  L  *  Q  L  F  G  C  D  C  A  S  S  F  T  Y  T  R  *  T  S  G  A  S  R  I  M  C  T  Q  S  G  G  I   : G  Y  L  E  G  N  *  Q  G  G  C  S  E  *  W  S  S  T  D  Y  *  R  W  N  I  S  S  K  L  N  *  T  Y  S  T  K  A  R  Q  T  R :   *  Q  R  R  F  I  F  *  *  F  K  R  R  K  Y  R  Q  C  Q  R  W  L  F  E  S  P  R  R  F  F  L  R  K  V  T  F  L  W  V  Q  F  *  I  *  D  *  A  E  F  R  E  I  F  *  S  Q  I  R  C  C  R  Y  M  C  G  Y  L  S  L  D  V  L  C  S  S  S  G  C  S  N  K  N  I  S  *  M  L  L  R  F  G  C  P  V  K  I  S  R  T  K  Y  I  S  *  S  V  A  Y  T  Y  L  S  I  S  R  V </first_frame>
            <second_frame>  R  G  R  E  D  G  A  T  P  T  F  S  L  G  R  G  R  A  V  S  G  G  S  P  M  I  K  G  S  L  H  V  Q  S  V  G  A  F  S  E  K  A  E  S  V  S  S  P  I  R  Y  S  R  L  K  M  L  D  V  Y  R  G  T  D  M  Q  S  C  S  N  F  S  D  V  I  V  Q  V  P  S  L  T  Q  D  E  P  L  E  P  L  A  L  C  A  P  S  Q  E  E  L  :  A  I  L  K  G  I  D  K  G  D  V  L  S  S  G  A  P  Q  T  T  K  D  G  T  L  A  R  N  S  T  E  H  T  Q  P  R  R  G  K  L   : G  S  R  E  D  L  S  F  D  D  S  R  E  E  S  T  D  N  A  K  G  G  Y  L  N  H  P  E  G  S  F  F  E  K  L  H  S  Y  G  S  S  S  K  S  E  T  K  Q  S  L  E  R  F  S  D  P  K  L  G  A  V  G  I  C  V  D  I  C  L  L  M  Y  Y  A  V  H  Q  G  A  V  T  K  T  Y  L  K  C  Y  *  G  L  D  V  L  L  K  F  Q  E  P  N  T  *  A  S  L  L  L  I  H  I  F  Q  *  A  E   </second_frame>
            <third_frame>   G  D  V  K  M  V  L  P  L  L  F  L  L  V  G  V  V  L  S  L  E  G  A  P  *  L  K  A  L  F  M  C  S  Q  S  G  H  S  R  R  K  L  K  V  F  P  L  L  Y  D  T  V  G  *  K  C  L  M  C  T  E  G  R  T  C  S  P  V  A  T  F  R  M  *  L  C  K  F  L  H  L  H  K  M  N  L  W  S  L  S  H  Y  V  H  P  V  R  R  N  W :   L  S  *  R  E  L  T  R  G  M  F  *  V  V  E  L  H  R  L  L  K  M  E  H  *  L  E  T  Q  L  N  I  L  N  Q  G  A  A  N  *  :  V  A  E  K  I  Y  L  L  M  I  Q  E  K  K  V  P  T  M  P  K  V  V  I  *  I  T  Q  K  V  L  S  S  K  S  Y  I  L  M  G  P  V  L  N  L  R  L  S  R  V  *  R  D  F  L  I  P  N  *  V  L  *  V  Y  V  W  I  S  V  S  *  C  T  M  Q  F  I  R  V  Q  *  Q  K  H  I  L  N  V  T  K  V  W  M  S  C  *  N  F  K  N  Q  I  H  K  L  V  C  C  L  Y  I  S  F  N  K  Q  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61497" stop="61198"/>
                    <exon start="61095" stop="60975"/>
                    <exon start="60857" stop="60592"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGREDGATPTFSLGRGRAVSGGSPMIKGSLHVQSVGAFSEKAESVSSPIRYSRLKMLDVYRGTDMQSCSNFSDVIVQVPSLTQDEPLEPLALCAPSQEELAILKGIDKGDVLSSGAPQTTKDGTLARNSTEHTQPRRGKLGSREDLSFDDSREESTDNAKGGYLNHPEGSFFEKLHSYGSSSKSETKQSLERFSDPKLGAVGICVDICLLMYYAVHQGAVTKTYLKCY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="65471" PGL_stop="61625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65471" e_stop="65329"/>
            <exon e_start="62377" e_stop="62289"/>
            <exon e_start="62100" e_stop="61625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.989"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65471" e_stop="65329" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65328" i_stop="62378" i_length="2951"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="62377" e_stop="62289" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62288" i_stop="62101" i_length="188"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="62100" e_stop="61625" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65471" stop="65329"/>
              <exon start="62377" stop="62289"/>
              <exon start="62100" stop="61665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65470" stop="65329"/>
              <exon start="62377" stop="62289"/>
              <exon start="62100" stop="61625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65470" stop="65329"/>
              <exon start="62377" stop="62289"/>
              <exon start="62100" stop="61855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210316" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTTCTCCCCTTCTTCCCTCCTCTCACAAAGCAGCATAAATTAGGGTTTTCTTTGAGCGCTTATTCACTTTTTCTCCTTCCGATCATCAGCCATGGGTGACAAAACGCAATTTGATTCTCGCCATAGTCAGATCTCCAAAG : ATGTGCAAGGACCCAACGATTCCATTCCGCTTTCACCGCAGTGGCTCCTGCCAAAACCAGGGGAAAGTAAGGCTGGGATGGTCACCGGG : GACAACCATCTCAATGCACATCCGGGGTATCCTATTCGTTCAGAGTTAGCAAAATTTCCTGGGATGAGTGAAGATATGCATGATAATCAAAAGAAGAAAGATGTGTTTAGGCCATCTGTGCTCGATATGGAATCAGGTCGACGGGATCGCTGGCGTGATGAAGAAAGGGACACCAATTCTGCTGTTCGAAGGGATCGCTGGAGGGAGGGAGATAAGGAGATTGGTGATGGCCGCAAGGTGGAGCGCTGGTCGGACTCCTCTGGCAGACATCATGGAGAAGTACGACGTGGTCCAGGTGAAAGATGGACCGATTCTGGAAATAGGGATAGCAATCACGATCAGCGTCGAGAGAGCAAATGGAACACGCGCTGGGGACCTGATGAGAAGGAGGCAGATGCTGTGCGTGAGAAATGGAGCAACCCTAGCAAAGATGCTGAAATGCATCTTGAGAAGGGGTCGCCAGGTCTTGCCTATCA</gDNA_template>
            <first_frame> L  L  L  P  F  F  P  P  L  T  K  Q  H  K  L  G  F  S  L  S  A  Y  S  L  F  L  L  P  I  I  S  H  G  *  Q  N  A  I  *  F  S  P  *  S  D  L  Q  R :   C  A  R  T  Q  R  F  H  S  A  F  T  A  V  A  P  A  K  T  R  G  K  *  G  W  D  G  H  R   : G  Q  P  S  Q  C  T  S  G  V  S  Y  S  F  R  V  S  K  I  S  W  D  E  *  R  Y  A  *  *  S  K  E  E  R  C  V  *  A  I  C  A  R  Y  G  I  R  S  T  G  S  L  A  *  *  R  K  G  H  Q  F  C  C  S  K  G  S  L  E  G  G  R  *  G  D  W  *  W  P  Q  G  G  A  L  V  G  L  L  W  Q  T  S  W  R  S  T  T  W  S  R  *  K  M  D  R  F  W  K  *  G  *  Q  S  R  S  A  S  R  E  Q  M  E  H  A  L  G  T  *  *  E  G  G  R  C  C  A  *  E  M  E  Q  P  *  Q  R  C  *  N  A  S  *  E  G  V  A  R  S  C  L  S </first_frame>
            <second_frame>  F  F  S  P  S  S  L  L  S  Q  S  S  I  N  *  G  F  L  *  A  L  I  H  F  F  S  F  R  S  S  A  M  G  D  K  T  Q  F  D  S  R  H  S  Q  I  S  K   : D  V  Q  G  P  N  D  S  I  P  L  S  P  Q  W  L  L  P  K  P  G  E  S  K  A  G  M  V  T  G  :  D  N  H  L  N  A  H  P  G  Y  P  I  R  S  E  L  A  K  F  P  G  M  S  E  D  M  H  D  N  Q  K  K  K  D  V  F  R  P  S  V  L  D  M  E  S  G  R  R  D  R  W  R  D  E  E  R  D  T  N  S  A  V  R  R  D  R  W  R  E  G  D  K  E  I  G  D  G  R  K  V  E  R  W  S  D  S  S  G  R  H  H  G  E  V  R  R  G  P  G  E  R  W  T  D  S  G  N  R  D  S  N  H  D  Q  R  R  E  S  K  W  N  T  R  W  G  P  D  E  K  E  A  D  A  V  R  E  K  W  S  N  P  S  K  D  A  E  M  H  L  E  K  G  S  P  G  L  A  Y   </second_frame>
            <third_frame>   S  S  P  L  L  P  S  S  H  K  A  A  *  I  R  V  F  F  E  R  L  F  T  F  S  P  S  D  H  Q  P  W  V  T  K  R  N  L  I  L  A  I  V  R  S  P  K  :  M  C  K  D  P  T  I  P  F  R  F  H  R  S  G  S  C  Q  N  Q  G  K  V  R  L  G  W  S  P  G :   T  T  I  S  M  H  I  R  G  I  L  F  V  Q  S  *  Q  N  F  L  G  *  V  K  I  C  M  I  I  K  R  R  K  M  C  L  G  H  L  C  S  I  W  N  Q  V  D  G  I  A  G  V  M  K  K  G  T  P  I  L  L  F  E  G  I  A  G  G  R  E  I  R  R  L  V  M  A  A  R  W  S  A  G  R  T  P  L  A  D  I  M  E  K  Y  D  V  V  Q  V  K  D  G  P  I  L  E  I  G  I  A  I  T  I  S  V  E  R  A  N  G  T  R  A  G  D  L  M  R  R  R  Q  M  L  C  V  R  N  G  A  T  L  A  K  M  L  K  C  I  L  R  R  G  R  Q  V  L  P  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65413" stop="65329"/>
                    <exon start="62377" stop="62289"/>
                    <exon start="62100" stop="61627"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALIHFFSFRSSAMGDKTQFDSRHSQISKDVQGPNDSIPLSPQWLLPKPGESKAGMVTGDNHLNAHPGYPIRSELAKFPGMSEDMHDNQKKKDVFRPSVLDMESGRRDRWRDEERDTNSAVRRDRWREGDKEIGDGRKVERWSDSSGRHHGEVRRGPGERWTDSGNRDSNHDQRRESKWNTRWGPDEKEADAVREKWSNPSKDAEMHLEKGSPGLAY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="67618" PGL_stop="69463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67618" e_stop="67828"/>
            <exon e_start="69017" e_stop="69108"/>
            <exon e_start="69203" e_stop="69463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="67618" e_stop="67828" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67829" i_stop="69016" i_length="1188"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69017" e_stop="69108" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="69109" i_stop="69202" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="69203" e_stop="69463" e_length="261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67618" stop="67828"/>
              <exon start="69017" stop="69108"/>
              <exon start="69203" stop="69463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298262" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTTTAAACAATTTTATTGTTTGGTAATATAATTTACTAATTATGGCAGAGGAAAAGAAGTTCACAAATTTTGCAGTCCAAAATGGATCAGTTGATATTTGTGAAGTCATAAAGAGTTATATACCATTCTTGAATGTGAGAAGATTATCAGAAAATGCCACTTTGCCCAAAAGAATGTTCCCTCATTCTGCAGCTTATGATCTTTTCAG : TGCAAGGGACGTTATGGTGCCAGCACGAGGCAAGGCAAAAGTTGCCACTGACTTAAGCATAGACTTACCTCCAGGAACCTATGGTCGTGTCG : CTGCAAGATCAAGTTTGTCTTGGCATCGTTCCATTGATGTTGGAGGTGGTGTGGTTGATTTAGACAAAAATCCTGTTTTCGTGATACTGTTCAACCATTCTGATGTTGATTTCGAGGTGAAAGTTGGCGATAACATAGCACAGCTAGTCATTGAGCTCCATGCTATACCTGAGATTGTTGAGGTTTATCAATAATTATAATGTGGGGTTTGAATTTGCTGGAGCAGCTTTATGTCTGTGTATGTTATGCAGTTGTTATGTT</gDNA_template>
            <first_frame> K  F  *  T  I  L  L  F  G  N  I  I  Y  *  L  W  Q  R  K  R  S  S  Q  I  L  Q  S  K  M  D  Q  L  I  F  V  K  S  *  R  V  I  Y  H  S  *  M  *  E  D  Y  Q  K  M  P  L  C  P  K  E  C  S  L  I  L  Q  L  M  I  F  S   : V  Q  G  T  L  W  C  Q  H  E  A  R  Q  K  L  P  L  T  *  A  *  T  Y  L  Q  E  P  M  V  V  S  :  L  Q  D  Q  V  C  L  G  I  V  P  L  M  L  E  V  V  W  L  I  *  T  K  I  L  F  S  *  Y  C  S  T  I  L  M  L  I  S  R  *  K  L  A  I  T  *  H  S  *  S  L  S  S  M  L  Y  L  R  L  L  R  F  I  N  N  Y  N  V  G  F  E  F  A  G  A  A  L  C  L  C  M  L  C  S  C  Y  V </first_frame>
            <second_frame>  N  F  K  Q  F  Y  C  L  V  I  *  F  T  N  Y  G  R  G  K  E  V  H  K  F  C  S  P  K  W  I  S  *  Y  L  *  S  H  K  E  L  Y  T  I  L  E  C  E  K  I  I  R  K  C  H  F  A  Q  K  N  V  P  S  F  C  S  L  *  S  F  Q  :  C  K  G  R  Y  G  A  S  T  R  Q  G  K  S  C  H  *  L  K  H  R  L  T  S  R  N  L  W  S  C  R :   C  K  I  K  F  V  L  A  S  F  H  *  C  W  R  W  C  G  *  F  R  Q  K  S  C  F  R  D  T  V  Q  P  F  *  C  *  F  R  G  E  S  W  R  *  H  S  T  A  S  H  *  A  P  C  Y  T  *  D  C  *  G  L  S  I  I  I  M  W  G  L  N  L  L  E  Q  L  Y  V  C  V  C  Y  A  V  V  M   </second_frame>
            <third_frame>   I  L  N  N  F  I  V  W  *  Y  N  L  L  I  M  A  E  E  K  K  F  T  N  F  A  V  Q  N  G  S  V  D  I  C  E  V  I  K  S  Y  I  P  F  L  N  V  R  R  L  S  E  N  A  T  L  P  K  R  M  F  P  H  S  A  A  Y  D  L  F  S :   A  R  D  V  M  V  P  A  R  G  K  A  K  V  A  T  D  L  S  I  D  L  P  P  G  T  Y  G  R  V   : A  A  R  S  S  L  S  W  H  R  S  I  D  V  G  G  G  V  V  D  L  D  K  N  P  V  F  V  I  L  F  N  H  S  D  V  D  F  E  V  K  V  G  D  N  I  A  Q  L  V  I  E  L  H  A  I  P  E  I  V  E  V  Y  Q  *  L  *  C  G  V  *  I  C  W  S  S  F  M  S  V  Y  V  M  Q  L  L  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67647" stop="67828"/>
                    <exon start="69017" stop="69108"/>
                    <exon start="69203" stop="69396"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNLLIMAEEKKFTNFAVQNGSVDICEVIKSYIPFLNVRRLSENATLPKRMFPHSAAYDLFSARDVMVPARGKAKVATDLSIDLPPGTYGRVAARSSLSWHRSIDVGGGVVDLDKNPVFVILFNHSDVDFEVKVGDNIAQLVIELHAIPEIVEVYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="76490" PGL_stop="73595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76490" e_stop="76298"/>
            <exon e_start="76132" e_stop="75468"/>
            <exon e_start="74661" e_stop="74335"/>
            <exon e_start="73936" e_stop="73595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.984"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.908" e_score="0.994"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="76490" e_stop="76298" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="76297" i_stop="76133" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="76132" e_stop="75468" e_length="665"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75467" i_stop="74662" i_length="806"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="74661" e_stop="74335" e_length="327"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.908">
            <gDNA_intron_boundary i_start="74334" i_stop="73937" i_length="398"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="73936" e_stop="73595" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76490" stop="76298"/>
              <exon start="76132" stop="75468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76481" stop="76298"/>
              <exon start="76132" stop="75501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76360" stop="76298"/>
              <exon start="76132" stop="75624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75687" stop="75468"/>
              <exon start="74661" stop="74335"/>
              <exon start="73936" stop="73595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAATCTAAACACCTTTGAAGTTTCTTTTGTATGCTCTGTTTTTGTACTTTGTACTTCAAAAAGCTATCTCTATTTATACTTCTTCTCCGTCAATTATTTTTCACCATCAAATTAACATCCATGGCTAATTTGCTTCACAATTCATCCTTCTTCCTTCTTCTCTGTCTCTTGCATTTCGTACTCGTCGCGA : AATCGCAGTCATTTATTGGTATAAATTATGGCCAAGTTGCGGATAATTTACCGGCACCGGAGGCAACAGCCAAGTTACTACAATCAACTTCAATTCAAAAAGTCCGGTTATACGGATCCGACCCGGCAATTATCAAAGCTTTAGCAAATACCGGTATCGGAATCATGATCGGAGTAGCCAACGGTGATATTCCGGCGATGGCATCAGACCCGAACTTCGCAAAAGGATGGCTGAGTTCAAACGTGCTTCCGTTTTACCCGGCGAGTGAAATTATCGTAATTAACGTCGGAAATGAGGTTATGTCTTCAAATGATCAGAATCTGATGACGAATTTGTTGCCGGCGATGCAAAATTTACGAAAAGCCCTAAATGATGTTTCAATTGGAGGGAAAATTAAGGTCTCTACGGTTCATTCTATGGCGGTTATGAAGCAATCGGATCCTCCGTCTTCTGGAAGTTTCGACCCGAATATTGGGGATTTGTTGAAAGGATTGTTGGAGTTCAATAAAGCTACTGGTTCTCCTTTCGCCATTAATCCTTATCCGTTTTTCGCTTATCAGAGTGATCCTAGACCTGATACTTTAGCTTTTTGCTTGTTTCAACCTAATGCTGGTCGAGTTGATGCTGGCACCAAGATCAAGTACACCAACATGTTCGATGCTCAG : GTGGATGCAATAAGAGCAGCGCTTAACGCTATGGGATTCAAGGAAGTAGAGATTGTGATTGCGGAAACAGGGTGGCCTTATAAGGGAGACAGCAATGAAGTTGGTCCAAGTATTGAGAATGCAAAGGCTTACAATGGCAATTTGATTGCTCACTTGAGGTCAATGGTTGGTACTCCTTTGATGCCTGGCAAATCAGTAGATACCTATCTCTTTGCCATATATGATGAGGATCTCAAACCAGGACCAACTTCTGAGCGATCCTTCGGACTTTTTAAGCCTGATTTAACCATGAGTTATGATATTGGACTTTCTAAAGCCAACAACCAG : GTTCCAACACCAAAAACTCCGGTGTCTCCCTCGCCAAATGCATCCCCAAAAGCTCCTGTGTCTCTCTCACCAAATCCAGCACCAAAAGCTCCGGTGACTCCCACACTGGTTCCAACGCCAAACACCACAGTGACTCCCCCGTCACCAAAGACAGAGAAAAGTGTCAAGGCAGGTGTATCAGATTCTCAATCGCAAGCAAATATCAACGTAGGGATGCTTGTTTTGAGCCAAATACTGTGGTACCCCATGCTGCATATGCGATAAATCTCTTTACCAAAATTCAGTAAAGAATGTTTGAACTGACAGCATCTCTCTCATCAACGTGTCCTAGTAAGCTGCTGA</gDNA_template>
            <first_frame> E  E  S  K  H  L  *  S  F  F  C  M  L  C  F  C  T  L  Y  F  K  K  L  S  L  F  I  L  L  L  R  Q  L  F  F  T  I  K  L  T  S  M  A  N  L  L  H  N  S  S  F  F  L  L  L  C  L  L  H  F  V  L  V  A   : K  S  Q  S  F  I  G  I  N  Y  G  Q  V  A  D  N  L  P  A  P  E  A  T  A  K  L  L  Q  S  T  S  I  Q  K  V  R  L  Y  G  S  D  P  A  I  I  K  A  L  A  N  T  G  I  G  I  M  I  G  V  A  N  G  D  I  P  A  M  A  S  D  P  N  F  A  K  G  W  L  S  S  N  V  L  P  F  Y  P  A  S  E  I  I  V  I  N  V  G  N  E  V  M  S  S  N  D  Q  N  L  M  T  N  L  L  P  A  M  Q  N  L  R  K  A  L  N  D  V  S  I  G  G  K  I  K  V  S  T  V  H  S  M  A  V  M  K  Q  S  D  P  P  S  S  G  S  F  D  P  N  I  G  D  L  L  K  G  L  L  E  F  N  K  A  T  G  S  P  F  A  I  N  P  Y  P  F  F  A  Y  Q  S  D  P  R  P  D  T  L  A  F  C  L  F  Q  P  N  A  G  R  V  D  A  G  T  K  I  K  Y  T  N  M  F  D  A  Q  :  V  D  A  I  R  A  A  L  N  A  M  G  F  K  E  V  E  I  V  I  A  E  T  G  W  P  Y  K  G  D  S  N  E  V  G  P  S  I  E  N  A  K  A  Y  N  G  N  L  I  A  H  L  R  S  M  V  G  T  P  L  M  P  G  K  S  V  D  T  Y  L  F  A  I  Y  D  E  D  L  K  P  G  P  T  S  E  R  S  F  G  L  F  K  P  D  L  T  M  S  Y  D  I  G  L  S  K  A  N  N  Q  :  V  P  T  P  K  T  P  V  S  P  S  P  N  A  S  P  K  A  P  V  S  L  S  P  N  P  A  P  K  A  P  V  T  P  T  L  V  P  T  P  N  T  T  V  T  P  P  S  P  K  T  E  K  S  V  K  A  G  V  S  D  S  Q  S  Q  A  N  I  N  V  G  M  L  V  L  S  Q  I  L  W  Y  P  M  L  H  M  R  *  I  S  L  P  K  F  S  K  E  C  L  N  *  Q  H  L  S  H  Q  R  V  L  V  S  C  * </first_frame>
            <second_frame>  K  N  L  N  T  F  E  V  S  F  V  C  S  V  F  V  L  C  T  S  K  S  Y  L  Y  L  Y  F  F  S  V  N  Y  F  S  P  S  N  *  H  P  W  L  I  C  F  T  I  H  P  S  S  F  F  S  V  S  C  I  S  Y  S  S  R  :  N  R  S  H  L  L  V  *  I  M  A  K  L  R  I  I  Y  R  H  R  R  Q  Q  P  S  Y  Y  N  Q  L  Q  F  K  K  S  G  Y  T  D  P  T  R  Q  L  S  K  L  *  Q  I  P  V  S  E  S  *  S  E  *  P  T  V  I  F  R  R  W  H  Q  T  R  T  S  Q  K  D  G  *  V  Q  T  C  F  R  F  T  R  R  V  K  L  S  *  L  T  S  E  M  R  L  C  L  Q  M  I  R  I  *  *  R  I  C  C  R  R  C  K  I  Y  E  K  P  *  M  M  F  Q  L  E  G  K  L  R  S  L  R  F  I  L  W  R  L  *  S  N  R  I  L  R  L  L  E  V  S  T  R  I  L  G  I  C  *  K  D  C  W  S  S  I  K  L  L  V  L  L  S  P  L  I  L  I  R  F  S  L  I  R  V  I  L  D  L  I  L  *  L  F  A  C  F  N  L  M  L  V  E  L  M  L  A  P  R  S  S  T  P  T  C  S  M  L  R :   W  M  Q  *  E  Q  R  L  T  L  W  D  S  R  K  *  R  L  *  L  R  K  Q  G  G  L  I  R  E  T  A  M  K  L  V  Q  V  L  R  M  Q  R  L  T  M  A  I  *  L  L  T  *  G  Q  W  L  V  L  L  *  C  L  A  N  Q  *  I  P  I  S  L  P  Y  M  M  R  I  S  N  Q  D  Q  L  L  S  D  P  S  D  F  L  S  L  I  *  P  *  V  M  I  L  D  F  L  K  P  T  T  R :   F  Q  H  Q  K  L  R  C  L  P  R  Q  M  H  P  Q  K  L  L  C  L  S  H  Q  I  Q  H  Q  K  L  R  *  L  P  H  W  F  Q  R  Q  T  P  Q  *  L  P  R  H  Q  R  Q  R  K  V  S  R  Q  V  Y  Q  I  L  N  R  K  Q  I  S  T  *  G  C  L  F  *  A  K  Y  C  G  T  P  C  C  I  C  D  K  S  L  Y  Q  N  S  V  K  N  V  *  T  D  S  I  S  L  I  N  V  S  *  *  A  A   </second_frame>
            <third_frame>   R  I  *  T  P  L  K  F  L  L  Y  A  L  F  L  Y  F  V  L  Q  K  A  I  S  I  Y  T  S  S  P  S  I  I  F  H  H  Q  I  N  I  H  G  *  F  A  S  Q  F  I  L  L  P  S  S  L  S  L  A  F  R  T  R  R  E :   I  A  V  I  Y  W  Y  K  L  W  P  S  C  G  *  F  T  G  T  G  G  N  S  Q  V  T  T  I  N  F  N  S  K  S  P  V  I  R  I  R  P  G  N  Y  Q  S  F  S  K  Y  R  Y  R  N  H  D  R  S  S  Q  R  *  Y  S  G  D  G  I  R  P  E  L  R  K  R  M  A  E  F  K  R  A  S  V  L  P  G  E  *  N  Y  R  N  *  R  R  K  *  G  Y  V  F  K  *  S  E  S  D  D  E  F  V  A  G  D  A  K  F  T  K  S  P  K  *  C  F  N  W  R  E  N  *  G  L  Y  G  S  F  Y  G  G  Y  E  A  I  G  S  S  V  F  W  K  F  R  P  E  Y  W  G  F  V  E  R  I  V  G  V  Q  *  S  Y  W  F  S  F  R  H  *  S  L  S  V  F  R  L  S  E  *  S  *  T  *  Y  F  S  F  L  L  V  S  T  *  C  W  S  S  *  C  W  H  Q  D  Q  V  H  Q  H  V  R  C  S   : G  G  C  N  K  S  S  A  *  R  Y  G  I  Q  G  S  R  D  C  D  C  G  N  R  V  A  L  *  G  R  Q  Q  *  S  W  S  K  Y  *  E  C  K  G  L  Q  W  Q  F  D  C  S  L  E  V  N  G  W  Y  S  F  D  A  W  Q  I  S  R  Y  L  S  L  C  H  I  *  *  G  S  Q  T  R  T  N  F  *  A  I  L  R  T  F  *  A  *  F  N  H  E  L  *  Y  W  T  F  *  S  Q  Q  P   : G  S  N  T  K  N  S  G  V  S  L  A  K  C  I  P  K  S  S  C  V  S  L  T  K  S  S  T  K  S  S  G  D  S  H  T  G  S  N  A  K  H  H  S  D  S  P  V  T  K  D  R  E  K  C  Q  G  R  C  I  R  F  S  I  A  S  K  Y  Q  R  R  D  A  C  F  E  P  N  T  V  V  P  H  A  A  Y  A  I  N  L  F  T  K  I  Q  *  R  M  F  E  L  T  A  S  L  S  S  T  C  P  S  K  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76469" stop="76298"/>
                    <exon start="76132" stop="75468"/>
                    <exon start="74661" stop="74335"/>
                    <exon start="73936" stop="73673"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1425</number_coding_nucleotides>
                  <number_encoded_amino_acids>475</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFCMLCFCTLYFKKLSLFILLLRQLFFTIKLTSMANLLHNSSFFLLLCLLHFVLVAKSQSFIGINYGQVADNLPAPEATAKLLQSTSIQKVRLYGSDPAIIKALANTGIGIMIGVANGDIPAMASDPNFAKGWLSSNVLPFYPASEIIVINVGNEVMSSNDQNLMTNLLPAMQNLRKALNDVSIGGKIKVSTVHSMAVMKQSDPPSSGSFDPNIGDLLKGLLEFNKATGSPFAINPYPFFAYQSDPRPDTLAFCLFQPNAGRVDAGTKIKYTNMFDAQVDAIRAALNAMGFKEVEIVIAETGWPYKGDSNEVGPSIENAKAYNGNLIAHLRSMVGTPLMPGKSVDTYLFAIYDEDLKPGPTSERSFGLFKPDLTMSYDIGLSKANNQVPTPKTPVSPSPNASPKAPVSLSPNPAPKAPVTPTLVPTPNTTVTPPSPKTEKSVKAGVSDSQSQANINVGMLVLSQILWYPMLHMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="82340" PGL_stop="81312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82340" e_stop="82009"/>
            <exon e_start="81877" e_stop="81781"/>
            <exon e_start="81545" e_stop="81468"/>
            <exon e_start="81375" e_stop="81312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.707" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82340" e_stop="82009" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="0.707" acc_prob="0.993">
            <gDNA_intron_boundary i_start="82008" i_stop="81878" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81877" e_stop="81781" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.964">
            <gDNA_intron_boundary i_start="81780" i_stop="81546" i_length="235"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81545" e_stop="81468" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81467" i_stop="81376" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="81375" e_stop="81312" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82340" stop="82009"/>
              <exon start="81877" stop="81781"/>
              <exon start="81545" stop="81485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82288" stop="82009"/>
              <exon start="81877" stop="81781"/>
              <exon start="81545" stop="81468"/>
              <exon start="81375" stop="81357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82276" stop="82009"/>
              <exon start="81877" stop="81781"/>
              <exon start="81545" stop="81468"/>
              <exon start="81375" stop="81312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231405" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCCATCCACAGATAGGATGGATCATCATAACAAAATTCATAGAACTGAGACCTCTCCGAAAATAGATGAGTTATCCCCAACTTTGCAAGACACAGAGCTGCAGAAGGATGACAAAAGCTGCTCTGGTGGAGCAGAACAGTCAACTGAAAGCCAGACAAGAGAAGCAAATGCAGACAACATAGGATCTAATGAGCCAGATGTGAGCATGGAGATACTCGACTTCCAAACCGAGCTACTTGGTAAAATAGAGAACAGTACCTCGTGCAACACAATTATGGAAAAGGAATGTGACAACCTGACAGATTCTGGAACTGTGATTTCAAATGAAAAT : CATCAAGAAAAAACGCCACAAGAAGTTGAAATATCCATGGACCAGAAAGTCAGAGAAGATAGGCCAAAGATATTACAAGCTACAGACCAATTTAATG : GGATTCATCAAGAAGCCTCACAGAACAGTAAACTTTTCTATGATGAACAAAATAAAAGTTTTCCTGCCAAATTTACAG : GAAAAGGAGGTATAAAAATCTCCAATGTTGTTAGAAATGATCAAGAAACAGCTCTCACATTAGT</gDNA_template>
            <first_frame> C  H  P  Q  I  G  W  I  I  I  T  K  F  I  E  L  R  P  L  R  K  *  M  S  Y  P  Q  L  C  K  T  Q  S  C  R  R  M  T  K  A  A  L  V  E  Q  N  S  Q  L  K  A  R  Q  E  K  Q  M  Q  T  T  *  D  L  M  S  Q  M  *  A  W  R  Y  S  T  S  K  P  S  Y  L  V  K  *  R  T  V  P  R  A  T  Q  L  W  K  R  N  V  T  T  *  Q  I  L  E  L  *  F  Q  M  K  I :   I  K  K  K  R  H  K  K  L  K  Y  P  W  T  R  K  S  E  K  I  G  Q  R  Y  Y  K  L  Q  T  N  L  M  :  G  F  I  K  K  P  H  R  T  V  N  F  S  M  M  N  K  I  K  V  F  L  P  N  L  Q  :  E  K  E  V  *  K  S  P  M  L  L  E  M  I  K  K  Q  L  S  H  *  </first_frame>
            <second_frame>  A  I  H  R  *  D  G  S  S  *  Q  N  S  *  N  *  D  L  S  E  N  R  *  V  I  P  N  F  A  R  H  R  A  A  E  G  *  Q  K  L  L  W  W  S  R  T  V  N  *  K  P  D  K  R  S  K  C  R  Q  H  R  I  *  *  A  R  C  E  H  G  D  T  R  L  P  N  R  A  T  W  *  N  R  E  Q  Y  L  V  Q  H  N  Y  G  K  G  M  *  Q  P  D  R  F  W  N  C  D  F  K  *  K   : S  S  R  K  N  A  T  R  S  *  N  I  H  G  P  E  S  Q  R  R  *  A  K  D  I  T  S  Y  R  P  I  *  W :   D  S  S  R  S  L  T  E  Q  *  T  F  L  *  *  T  K  *  K  F  S  C  Q  I  Y  R :   K  R  R  Y  K  N  L  Q  C  C  *  K  *  S  R  N  S  S  H  I  S </second_frame>
            <third_frame>   P  S  T  D  R  M  D  H  H  N  K  I  H  R  T  E  T  S  P  K  I  D  E  L  S  P  T  L  Q  D  T  E  L  Q  K  D  D  K  S  C  S  G  G  A  E  Q  S  T  E  S  Q  T  R  E  A  N  A  D  N  I  G  S  N  E  P  D  V  S  M  E  I  L  D  F  Q  T  E  L  L  G  K  I  E  N  S  T  S  C  N  T  I  M  E  K  E  C  D  N  L  T  D  S  G  T  V  I  S  N  E  N  :  H  Q  E  K  T  P  Q  E  V  E  I  S  M  D  Q  K  V  R  E  D  R  P  K  I  L  Q  A  T  D  Q  F  N   : G  I  H  Q  E  A  S  Q  N  S  K  L  F  Y  D  E  Q  N  K  S  F  P  A  K  F  T   : G  K  G  G  I  K  I  S  N  V  V  R  N  D  Q  E  T  A  L  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82338" stop="82009"/>
                    <exon start="81877" stop="81781"/>
                    <exon start="81545" stop="81468"/>
                    <exon start="81375" stop="81314"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSTDRMDHHNKIHRTETSPKIDELSPTLQDTELQKDDKSCSGGAEQSTESQTREANADNIGSNEPDVSMEILDFQTELLGKIENSTSCNTIMEKECDNLTDSGTVISNENHQEKTPQEVEISMDQKVREDRPKILQATDQFNGIHQEASQNSKLFYDEQNKSFPAKFTGKGGIKISNVVRNDQETALTL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="90132" PGL_stop="94202"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90132" e_stop="90533"/>
            <exon e_start="90635" e_stop="92466"/>
            <exon e_start="92580" e_stop="93062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.545" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="0.993"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90132" e_stop="90533" e_length="402"/>
          </exon>
          <intron i_serial="1" don_prob="0.545" acc_prob="0.985">
            <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91882" stop="92464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91894" stop="92464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91914" stop="92400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91920" stop="92464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91924" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577626" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91931" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542108" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91938" stop="92348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91961" stop="92464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91980" stop="92466"/>
              <exon start="92580" stop="92675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296722" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91996" stop="92466"/>
              <exon start="92580" stop="92649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92010" stop="92334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92030" stop="92463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92031" stop="92466"/>
              <exon start="92580" stop="92830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92032" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92042" stop="92466"/>
              <exon start="92580" stop="92940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543514" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92043" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542588" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252081" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92066" stop="92466"/>
              <exon start="92580" stop="92793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92086" stop="92466"/>
              <exon start="92580" stop="92920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92086" stop="92466"/>
              <exon start="92580" stop="92634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92087" stop="92466"/>
              <exon start="92580" stop="92660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226675" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92118" stop="92466"/>
              <exon start="92580" stop="92818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92120" stop="92457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92123" stop="92466"/>
              <exon start="92580" stop="92660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226304" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92124" stop="92466"/>
              <exon start="92580" stop="92801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92126" stop="92466"/>
              <exon start="92580" stop="92936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549684" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92129" stop="92466"/>
              <exon start="92580" stop="92916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92136" stop="92466"/>
              <exon start="92580" stop="92696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92139" stop="92466"/>
              <exon start="92580" stop="93048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544325" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92154" stop="92466"/>
              <exon start="92580" stop="92675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92155" stop="92394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92157" stop="92466"/>
              <exon start="92580" stop="92640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92164" stop="92466"/>
              <exon start="92580" stop="92695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92179" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92224" stop="92466"/>
              <exon start="92580" stop="92967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377136" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92235" stop="92466"/>
              <exon start="92580" stop="93025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92245" stop="92466"/>
              <exon start="92580" stop="93047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375252" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92262" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200360" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92288" stop="92466"/>
              <exon start="92580" stop="92931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92288" stop="92466"/>
              <exon start="92580" stop="92919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92292" stop="92466"/>
              <exon start="92580" stop="92759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258018" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92298" stop="92466"/>
              <exon start="92580" stop="92945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92339" stop="92466"/>
              <exon start="92580" stop="93025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299571" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92374" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394668" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92389" stop="92466"/>
              <exon start="92580" stop="93018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258626" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92402" stop="92466"/>
              <exon start="92580" stop="93020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92402" stop="92466"/>
              <exon start="92580" stop="93020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92409" stop="92466"/>
              <exon start="92580" stop="93021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225893" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92419" stop="92466"/>
              <exon start="92580" stop="92934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92429" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220243" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92434" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283025" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92443" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92655" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278275" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92662" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278281" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92691" stop="93059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218315" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92708" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220161" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92711" stop="93035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227897" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92716" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278445" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92719" stop="92928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92773" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278480" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92803" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278475" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92827" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278332" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTATACCTTTTCCCTCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG : GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG : TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAACCA</gDNA_template>
            <first_frame> C  I  P  F  P  S  T  P  I  F  F  F  S  P  D  L  F  *  V  V  Y  L  L  Q  I  L  *  S  D  L  C  R  S  L  L  D  L  R  F  G  Y  G  F  A  A  F  L  Y  R  T  A  V  V  L  Y  R  T  G  D  *  R  A  V  W  M  D  G  S  I  F  V  C  S  G  R  R  L  T  K  R  W  W  I  *  C  V  C  V  F  V  W  D  R  *  A  *  S  S  I  R  S  V  R  S  *  *  I  C  G  D  W  R  R  S  F  S  N  L  D  V  I  I  A  R  V  Q  P  L  C  A  R  D  L  L  :  V  *  R  *  M  Q  G  L  S  V  L  F  V  V  V  I  D  Q  A  L  L  T  G  Y  H  R  R  R  L  N  H  R  T  L  W  *  I  Q  G  Y  D  G  L  I  L  M  F  I  I  I  *  M  F  Y  L  L  K  F  L  S  M  H  A  H  V  R  E  I  K  E  *  V  E  V  V  R  G  L  R  G  K  K  *  G  V  Y  C  F  M  L  P  G  L  C  H  V  G  C  A  R  M  A  G  Q  K  Y  L  I  K  L  Y  F  L  V  L  E  R  R  G  T  G  F  C  L  D  L  L  S  V  C  V  A  S  F  I  F  S  C  S  F  P  A  P  A  S  N  N  L  A  P  I  Q  W  L  L  V  F  Y  G  Q  V  I  R  V  E  L  L  N  M  A  M  D  K  A  T  F  L  L  L  H  S  S  E  V  H  N  Q  F  Y  I  I  S  I  H  I  L  I  T  F  P  L  *  S  P  T  Q  *  W  *  Y  L  *  S  I  V  V  E  S  F  N  K  P  H  K  A  *  S  F  I  C  S  H  I  Q  L  I  I  E  A  A  L  N  Y  V  I  K  Y  F  G  W  S  P  L  S  T  L  C  L  Y  P  I  *  P  *  F  L  I  T  *  G  S  C  T  Y  F  S  R  T  N  V  F  Q  K  R  K  Y  *  H  L  L  S  K  Y  *  Q  L  K  D  Q  S  L  D  Q  L  F  C  D  A  S  T  L  S  C  V  S  L  S  L  V  L  V  I  I  *  P  S  S  C  Q  T  *  T  I  I  *  I  L  V  G  F  F  Q  V  N  K  I  R  I  *  N  M  S  C  K  K  P  S  K  N  K  F  C  V  R  T  I  V  M  A  *  P  R  L  Q  L  C  L  F  L  L  M  A  V  L  F  H  L  F  S  R  L  F  H  L  E  I  T  S  L  W  M  S  *  F  L  L  S  *  F  Y  S  R  S  S  C  G  E  P  L  C  F  F  *  I  V  M  *  M  F  Q  S  M  E  M  P  I  M  A  P  L  L  C  S  L  L  G  S  V  F  *  A  G  L  G  F  *  L  L  N  *  F  R  V  L  G  R  S  C  I  *  L  D  D  G  K  F  A  T  *  N  L  G  I  S  L  F  L  I  H  A  V  W  G  P  T  L  W  W  G  V  L  L  S  *  C  M  D  V  L  P  G  A  F  *  F  C  L  C  C  C  C  C  *  S  *  R  S  E  D  A  F  A  A  V  G  S  *  I  I  L  V  T  L  L  G  C  S  C  Y  I  W  K  H  S  T  F  N  S  *  T  C  C  C  C  L  S  E  S  V  V  C  I  I  N  T  V  W  *  P  G  H  S  S  P  D  I  L  H  S  K  L  *  Q  I  N  F  L  P  W  G  F  I  K  H  I  M  M  L  L  M  S :   S  D  C  F  Y  *  S  G  C  K  A  C  F  H  D  I  *  Q  F  T  V  L  M  K  T  M  R  C  I  *  F  L  L  F  *  R  C  *  F  A  V  P  N  G  L  Q  F  H  L  F  N  I  E  V  I  I  F  G  F  T  V  S  F  S  F  R  S  I  F  L  F  I  S  R  V  C  P  C  L  P  E  M  L  S  H  G  S  I  C  *  D  *  H  G  V  C  P  L  A  *  K  V  L  R  H  F  S  I  I  I  Y  Y  R  V  I  V  V  T  I  I  L  D  F  Y  T  F  L  G  T  V  T  *  K  L  Y  S  L  T  S  L  I  K  Y  F  F  L  K  E  C  S  L  L  *  L  *  K  F  V  L  N   </first_frame>
            <second_frame>  V  Y  L  F  P  L  R  L  S  S  S  F  L  Q  I  S  S  K  *  F  I  F  S  K  F  Y  D  Q  I  C  V  D  R  C  L  I  Y  V  L  D  M  D  L  P  R  F  C  T  G  P  P  W  F  C  T  G  P  A  T  D  G  P  Y  G  W  M  V  R  Y  L  F  V  L  A  D  G  *  R  R  D  G  G  S  D  V  F  V  C  S  F  G  I  D  E  H  S  R  A  S  D  L  F  G  L  N  R  F  V  E  I  G  E  E  V  S  A  T  L  M  L  S  S  R  G  F  N  R  C  A  Q  E  I  Y  W :   F  E  D  R  C  K  D  Y  R  F  C  S  L  L  S  *  I  K  L  F  *  P  V  I  I  G  E  G  *  I  I  E  R  Y  G  E  S  K  V  M  M  V  *  F  *  C  L  *  L  F  K  C  F  I  C  L  S  F  Y  R  C  M  H  M  Y  E  R  *  K  N  E  L  R  L  C  E  V  *  E  E  K  S  E  V  F  T  V  L  C  C  Q  A  F  A  M  L  G  A  L  A  W  Q  A  K  S  T  *  *  N  Y  I  F  W  C  W  R  G  E  A  Q  G  F  A  W  I  S  S  L  C  V  S  P  L  L  F  F  H  V  L  S  L  L  L  R  P  T  I  S  H  R  S  S  G  Y  L  F  F  M  D  K  L  F  V  L  N  C  L  I  W  R  W  T  K  Q  R  F  Y  C  C  T  P  Q  R  Y  I  I  N  F  T  L  S  A  S  I  Y  *  L  L  F  L  Y  N  H  L  H  S  N  G  N  I  S  N  Q  *  L  *  N  H  S  T  S  R  T  K  L  S  L  L  Y  V  V  T  Y  S  *  L  L  K  Q  L  *  T  M  S  *  N  I  L  A  G  L  P  S  Q  L  Y  V  Y  I  Q  Y  N  H  D  F  *  *  L  R  V  H  V  H  I  F  Q  E  R  M  Y  F  K  N  E  N  I  D  T  F  *  V  S  I  N  N  *  K  T  N  R  *  T  N  Y  S  V  T  H  Q  L  *  V  A  L  A  *  A  S  C  *  *  L  F  S  R  L  A  V  K  L  E  L  L  F  E  Y  *  *  V  F  F  R  *  T  R  F  A  S  K  I  C  H  V  K  S  H  L  K  I  S  S  A  *  E  P  L  S  W  H  N  Q  G  F  N  Y  V  S  S  C  *  W  L  F  F  F  I  C  S  H  G  S  F  T  W  K  L  L  R  C  G  *  V  N  S  F  *  V  N  S  I  V  G  V  V  V  E  S  H  F  V  S  F  K  S  *  C  K  C  F  N  L  W  R  C  R  L  W  L  P  F  C  V  A  F  W  E  V  Y  F  R  Q  V  W  D  F  D  C  *  I  N  S  V  Y  W  V  D  L  V  S  D  W  M  M  E  N  L  Q  L  R  T  W  E  Y  L  C  F  *  F  M  L  S  G  V  P  P  C  G  G  E  C  C  S  V  D  A  W  M  F  Y  L  V  R  S  S  F  V  C  A  V  A  A  V  E  V  E  D  L  K  M  R  L  L  L  L  E  V  K  S  F  W  S  H  C  W  V  V  P  V  T  F  G  N  T  Q  L  L  T  P  K  L  V  A  V  A  C  L  N  L  S  C  A  S  L  T  Q  Y  G  S  L  V  I  L  L  L  I  Y  C  T  Q  S  C  S  R  *  I  F  S  L  G  V  L  L  S  I  L  *  C  Y  S  *   : V  P  I  V  S  T  R  V  D  V  R  H  V  F  M  I  Y  D  N  S  Q  F  S  *  R  P  C  G  A  F  N  F  S  S  F  E  D  A  D  L  P  Y  L  M  V  C  S  S  I  Y  S  I  L  K  L  L  F  L  V  L  L  *  V  S  V  F  A  L  F  F  Y  L  F  L  E  Y  V  R  V  C  R  R  C  C  P  M  E  V  F  V  E  I  S  M  G  C  V  L  W  R  K  R  F  Y  V  I  L  V  L  *  Y  T  I  E  L  L  W  L  R  L  F  *  I  F  I  P  F  W  G  L  *  H  E  S  C  T  H  S  R  V  *  S  N  T  F  F  L  K  S  V  R  Y  Y  N  S  E  S  L  F  *  T  </second_frame>
            <third_frame>   Y  T  F  S  L  Y  A  Y  L  L  L  F  S  R  S  L  L  S  S  L  S  S  P  N  F  M  I  R  S  V  *  I  V  A  *  S  T  F  W  I  W  I  C  R  V  S  V  P  D  R  R  G  F  V  P  D  R  R  L  T  G  R  M  D  G  W  F  D  I  C  L  F  W  P  T  V  D  E  E  M  V  D  L  M  C  L  C  V  R  L  G  *  M  S  I  V  E  H  Q  I  C  S  V  L  I  D  L  W  R  L  E  K  K  F  Q  Q  P  *  C  Y  H  R  E  G  S  T  V  V  R  K  R  F  I   : G  L  K  I  D  A  R  T  I  G  F  V  R  C  C  H  R  S  S  S  F  D  R  L  S  S  A  K  V  E  S  *  N  V  M  V  N  P  R  L  *  W  F  N  F  D  V  Y  N  Y  L  N  V  L  F  A  *  V  F  I  D  A  C  T  C  T  R  D  K  R  M  S  *  G  C  A  R  F  E  R  K  K  V  R  C  L  L  F  Y  V  A  R  P  L  P  C  W  V  R  S  H  G  R  P  K  V  P  N  K  T  I  F  F  G  V  G  E  E  R  H  R  V  L  P  G  S  P  L  C  V  C  R  L  F  Y  F  F  M  F  F  P  C  S  C  V  Q  Q  S  R  T  D  P  V  V  T  C  F  L  W  T  S  Y  S  C  *  I  A  *  Y  G  D  G  Q  S  N  V  S  T  A  A  L  L  R  G  T  *  S  I  L  H  Y  Q  H  P  Y  I  N  Y  F  S  S  I  I  T  Y  T  V  M  V  I  S  L  I  N  S  C  R  I  I  Q  Q  A  A  Q  S  L  V  F  Y  M  *  S  H  T  A  D  Y  *  S  S  F  K  L  C  H  K  I  F  W  L  V  S  P  L  N  S  M  F  I  S  N  I  T  M  I  F  D  N  L  G  F  M  Y  I  F  F  K  N  E  C  I  S  K  T  K  I  L  T  P  F  K  *  V  L  T  T  K  R  P  I  V  R  P  I  I  L  *  R  I  N  F  K  L  R  *  L  K  P  R  A  S  N  Y  L  A  V  *  L  S  N  L  N  Y  Y  L  N  I  S  R  F  F  S  G  E  Q  D  S  H  L  K  Y  V  M  *  K  A  I  *  K  *  V  L  R  K  N  H  C  H  G  I  T  K  A  S  T  M  S  L  L  V  D  G  C  S  F  S  F  V  L  T  A  L  S  L  G  N  Y  F  V  V  D  E  L  I  P  F  K  L  I  L  *  *  E  *  L  W  R  A  T  L  F  L  L  N  R  D  V  N  V  S  I  Y  G  D  A  D  Y  G  S  P  F  V  *  P  S  G  K  C  I  L  G  R  F  G  I  L  T  V  E  L  I  P  C  T  G  *  I  L  Y  L  I  G  *  W  K  I  C  N  L  E  L  G  N  I  F  V  S  D  S  C  C  L  G  S  H  L  V  V  G  S  V  A  Q  L  M  H  G  C  F  T  W  C  V  L  V  L  F  V  L  L  L  L  L  K  L  K  I  *  R  C  V  C  C  C  W  K  L  N  H  F  G  H  T  V  G  L  F  L  L  H  L  E  T  L  N  F  *  L  L  N  L  L  L  L  L  V  *  I  C  R  V  H  H  *  H  S  M  V  A  W  S  F  F  S  *  Y  T  A  L  K  V  V  A  D  K  F  S  P  L  G  F  Y  *  A  Y  Y  D  A  T  H  E  :  F  R  L  F  L  L  E  W  M  *  G  M  F  S  *  Y  M  T  I  H  S  S  H  E  D  H  A  V  H  L  I  S  P  L  L  K  M  L  I  C  R  T  *  W  F  A  V  P  F  I  Q  Y  *  S  Y  Y  F  W  F  Y  C  E  F  Q  F  S  L  Y  F  F  I  Y  F  *  S  M  S  V  F  A  G  D  V  V  P  W  K  Y  L  L  R  L  A  W  G  V  S  F  G  V  K  G  F  T  S  F  *  Y  Y  N  I  L  S  S  Y  C  G  Y  D  Y  F  R  F  L  Y  L  F  G  D  C  N  M  K  V  V  L  T  H  E  F  D  Q  I  L  F  S  *  R  V  F  V  I  I  T  L  K  V  C  F  K  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90884" stop="91240"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVYCFMLPGLCHVGCARMAGQKYLIKLYFLVLERRGTGFCLDLLSVCVASFIFSCSFPAPASNNLAPIQWLLVFYGQVIRVELLNMAMDKATFLLLHSSEVHNQFYIISIHILITFPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92097" stop="92417"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMLSGVPPCGGECCSVDAWMFYLVRSSFVCAVAAVEVEDLKMRLLLLEVKSFWSHCWVVPVTFGNTQLLTPKLVAVACLNLSCASLTQYGSLVILLLIYCTQSCSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90853" stop="91128"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCARFERKKVRCLLFYVARPLPCWVRSHGRPKVPNKTIFFGVGEERHRVLPGSPLCVCRLFYFFMFFPCSCVQQSRTDPVVTCFLWTSYSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90364" stop="90533"/>
                    <exon start="90635" stop="90683"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRDGGSDVFVCSFGIDEHSRASDLFGLNRFVEIGEEVSATLMLSSRGFNRCAQEIYWFEDRCKDYRFCSLLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90132" e_stop="90533"/>
            <exon e_start="90635" e_stop="92466"/>
            <exon e_start="92580" e_stop="93023"/>
            <exon e_start="94196" e_stop="94202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.545" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="0.993"/>
          <exon-intron don_prob="0.000" acc_prob="0.617" e_score="0.995"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
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            <referenceDNA id="SGN-E317812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91818" stop="92189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91829" stop="92400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92466"/>
              <exon start="92580" stop="92598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91844" stop="92131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91882" stop="92464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91894" stop="92464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91914" stop="92400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91920" stop="92464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91924" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577626" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91931" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542108" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91938" stop="92348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91961" stop="92464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91980" stop="92466"/>
              <exon start="92580" stop="92675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296722" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91996" stop="92466"/>
              <exon start="92580" stop="92649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92010" stop="92334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92030" stop="92463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92031" stop="92466"/>
              <exon start="92580" stop="92830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92032" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92042" stop="92466"/>
              <exon start="92580" stop="92940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543514" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92043" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542588" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252081" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92066" stop="92466"/>
              <exon start="92580" stop="92793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92086" stop="92466"/>
              <exon start="92580" stop="92920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92086" stop="92466"/>
              <exon start="92580" stop="92634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92087" stop="92466"/>
              <exon start="92580" stop="92660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226675" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92118" stop="92466"/>
              <exon start="92580" stop="92818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92120" stop="92457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92123" stop="92466"/>
              <exon start="92580" stop="92660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226304" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92124" stop="92466"/>
              <exon start="92580" stop="92801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92126" stop="92466"/>
              <exon start="92580" stop="92936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549684" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92129" stop="92466"/>
              <exon start="92580" stop="92916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92136" stop="92466"/>
              <exon start="92580" stop="92696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92154" stop="92466"/>
              <exon start="92580" stop="92675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92155" stop="92394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92157" stop="92466"/>
              <exon start="92580" stop="92640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92164" stop="92466"/>
              <exon start="92580" stop="92695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92179" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92224" stop="92466"/>
              <exon start="92580" stop="92967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377136" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92262" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200360" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92288" stop="92466"/>
              <exon start="92580" stop="92931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92288" stop="92466"/>
              <exon start="92580" stop="92919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92292" stop="92466"/>
              <exon start="92580" stop="92759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258018" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92298" stop="92466"/>
              <exon start="92580" stop="92945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92346" stop="92466"/>
              <exon start="92580" stop="93023"/>
              <exon start="94196" stop="94202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394215" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92374" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394668" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92389" stop="92466"/>
              <exon start="92580" stop="93018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258626" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92402" stop="92466"/>
              <exon start="92580" stop="93020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92402" stop="92466"/>
              <exon start="92580" stop="93020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92409" stop="92466"/>
              <exon start="92580" stop="93021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225893" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92419" stop="92466"/>
              <exon start="92580" stop="92934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92429" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220243" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92434" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283025" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92443" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92708" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220161" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92719" stop="92928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394594" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTATACCTTTTCCCTCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG : GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG : TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGA : AGAAAAA</gDNA_template>
            <first_frame> C  I  P  F  P  S  T  P  I  F  F  F  S  P  D  L  F  *  V  V  Y  L  L  Q  I  L  *  S  D  L  C  R  S  L  L  D  L  R  F  G  Y  G  F  A  A  F  L  Y  R  T  A  V  V  L  Y  R  T  G  D  *  R  A  V  W  M  D  G  S  I  F  V  C  S  G  R  R  L  T  K  R  W  W  I  *  C  V  C  V  F  V  W  D  R  *  A  *  S  S  I  R  S  V  R  S  *  *  I  C  G  D  W  R  R  S  F  S  N  L  D  V  I  I  A  R  V  Q  P  L  C  A  R  D  L  L  :  V  *  R  *  M  Q  G  L  S  V  L  F  V  V  V  I  D  Q  A  L  L  T  G  Y  H  R  R  R  L  N  H  R  T  L  W  *  I  Q  G  Y  D  G  L  I  L  M  F  I  I  I  *  M  F  Y  L  L  K  F  L  S  M  H  A  H  V  R  E  I  K  E  *  V  E  V  V  R  G  L  R  G  K  K  *  G  V  Y  C  F  M  L  P  G  L  C  H  V  G  C  A  R  M  A  G  Q  K  Y  L  I  K  L  Y  F  L  V  L  E  R  R  G  T  G  F  C  L  D  L  L  S  V  C  V  A  S  F  I  F  S  C  S  F  P  A  P  A  S  N  N  L  A  P  I  Q  W  L  L  V  F  Y  G  Q  V  I  R  V  E  L  L  N  M  A  M  D  K  A  T  F  L  L  L  H  S  S  E  V  H  N  Q  F  Y  I  I  S  I  H  I  L  I  T  F  P  L  *  S  P  T  Q  *  W  *  Y  L  *  S  I  V  V  E  S  F  N  K  P  H  K  A  *  S  F  I  C  S  H  I  Q  L  I  I  E  A  A  L  N  Y  V  I  K  Y  F  G  W  S  P  L  S  T  L  C  L  Y  P  I  *  P  *  F  L  I  T  *  G  S  C  T  Y  F  S  R  T  N  V  F  Q  K  R  K  Y  *  H  L  L  S  K  Y  *  Q  L  K  D  Q  S  L  D  Q  L  F  C  D  A  S  T  L  S  C  V  S  L  S  L  V  L  V  I  I  *  P  S  S  C  Q  T  *  T  I  I  *  I  L  V  G  F  F  Q  V  N  K  I  R  I  *  N  M  S  C  K  K  P  S  K  N  K  F  C  V  R  T  I  V  M  A  *  P  R  L  Q  L  C  L  F  L  L  M  A  V  L  F  H  L  F  S  R  L  F  H  L  E  I  T  S  L  W  M  S  *  F  L  L  S  *  F  Y  S  R  S  S  C  G  E  P  L  C  F  F  *  I  V  M  *  M  F  Q  S  M  E  M  P  I  M  A  P  L  L  C  S  L  L  G  S  V  F  *  A  G  L  G  F  *  L  L  N  *  F  R  V  L  G  R  S  C  I  *  L  D  D  G  K  F  A  T  *  N  L  G  I  S  L  F  L  I  H  A  V  W  G  P  T  L  W  W  G  V  L  L  S  *  C  M  D  V  L  P  G  A  F  *  F  C  L  C  C  C  C  C  *  S  *  R  S  E  D  A  F  A  A  V  G  S  *  I  I  L  V  T  L  L  G  C  S  C  Y  I  W  K  H  S  T  F  N  S  *  T  C  C  C  C  L  S  E  S  V  V  C  I  I  N  T  V  W  *  P  G  H  S  S  P  D  I  L  H  S  K  L  *  Q  I  N  F  L  P  W  G  F  I  K  H  I  M  M  L  L  M  S :   S  D  C  F  Y  *  S  G  C  K  A  C  F  H  D  I  *  Q  F  T  V  L  M  K  T  M  R  C  I  *  F  L  L  F  *  R  C  *  F  A  V  P  N  G  L  Q  F  H  L  F  N  I  E  V  I  I  F  G  F  T  V  S  F  S  F  R  S  I  F  L  F  I  S  R  V  C  P  C  L  P  E  M  L  S  H  G  S  I  C  *  D  *  H  G  V  C  P  L  A  *  K  V  L  R  H  F  S  I  I  I  Y  Y  R  V  I  V  V  T  I  I  L  D  F  Y  T  F  L  G  T  V  T  *  K  L  Y  S  L  T  S  L  I  K  Y  F  F  L  K  E :   E  K </first_frame>
            <second_frame>  V  Y  L  F  P  L  R  L  S  S  S  F  L  Q  I  S  S  K  *  F  I  F  S  K  F  Y  D  Q  I  C  V  D  R  C  L  I  Y  V  L  D  M  D  L  P  R  F  C  T  G  P  P  W  F  C  T  G  P  A  T  D  G  P  Y  G  W  M  V  R  Y  L  F  V  L  A  D  G  *  R  R  D  G  G  S  D  V  F  V  C  S  F  G  I  D  E  H  S  R  A  S  D  L  F  G  L  N  R  F  V  E  I  G  E  E  V  S  A  T  L  M  L  S  S  R  G  F  N  R  C  A  Q  E  I  Y  W :   F  E  D  R  C  K  D  Y  R  F  C  S  L  L  S  *  I  K  L  F  *  P  V  I  I  G  E  G  *  I  I  E  R  Y  G  E  S  K  V  M  M  V  *  F  *  C  L  *  L  F  K  C  F  I  C  L  S  F  Y  R  C  M  H  M  Y  E  R  *  K  N  E  L  R  L  C  E  V  *  E  E  K  S  E  V  F  T  V  L  C  C  Q  A  F  A  M  L  G  A  L  A  W  Q  A  K  S  T  *  *  N  Y  I  F  W  C  W  R  G  E  A  Q  G  F  A  W  I  S  S  L  C  V  S  P  L  L  F  F  H  V  L  S  L  L  L  R  P  T  I  S  H  R  S  S  G  Y  L  F  F  M  D  K  L  F  V  L  N  C  L  I  W  R  W  T  K  Q  R  F  Y  C  C  T  P  Q  R  Y  I  I  N  F  T  L  S  A  S  I  Y  *  L  L  F  L  Y  N  H  L  H  S  N  G  N  I  S  N  Q  *  L  *  N  H  S  T  S  R  T  K  L  S  L  L  Y  V  V  T  Y  S  *  L  L  K  Q  L  *  T  M  S  *  N  I  L  A  G  L  P  S  Q  L  Y  V  Y  I  Q  Y  N  H  D  F  *  *  L  R  V  H  V  H  I  F  Q  E  R  M  Y  F  K  N  E  N  I  D  T  F  *  V  S  I  N  N  *  K  T  N  R  *  T  N  Y  S  V  T  H  Q  L  *  V  A  L  A  *  A  S  C  *  *  L  F  S  R  L  A  V  K  L  E  L  L  F  E  Y  *  *  V  F  F  R  *  T  R  F  A  S  K  I  C  H  V  K  S  H  L  K  I  S  S  A  *  E  P  L  S  W  H  N  Q  G  F  N  Y  V  S  S  C  *  W  L  F  F  F  I  C  S  H  G  S  F  T  W  K  L  L  R  C  G  *  V  N  S  F  *  V  N  S  I  V  G  V  V  V  E  S  H  F  V  S  F  K  S  *  C  K  C  F  N  L  W  R  C  R  L  W  L  P  F  C  V  A  F  W  E  V  Y  F  R  Q  V  W  D  F  D  C  *  I  N  S  V  Y  W  V  D  L  V  S  D  W  M  M  E  N  L  Q  L  R  T  W  E  Y  L  C  F  *  F  M  L  S  G  V  P  P  C  G  G  E  C  C  S  V  D  A  W  M  F  Y  L  V  R  S  S  F  V  C  A  V  A  A  V  E  V  E  D  L  K  M  R  L  L  L  L  E  V  K  S  F  W  S  H  C  W  V  V  P  V  T  F  G  N  T  Q  L  L  T  P  K  L  V  A  V  A  C  L  N  L  S  C  A  S  L  T  Q  Y  G  S  L  V  I  L  L  L  I  Y  C  T  Q  S  C  S  R  *  I  F  S  L  G  V  L  L  S  I  L  *  C  Y  S  *   : V  P  I  V  S  T  R  V  D  V  R  H  V  F  M  I  Y  D  N  S  Q  F  S  *  R  P  C  G  A  F  N  F  S  S  F  E  D  A  D  L  P  Y  L  M  V  C  S  S  I  Y  S  I  L  K  L  L  F  L  V  L  L  *  V  S  V  F  A  L  F  F  Y  L  F  L  E  Y  V  R  V  C  R  R  C  C  P  M  E  V  F  V  E  I  S  M  G  C  V  L  W  R  K  R  F  Y  V  I  L  V  L  *  Y  T  I  E  L  L  W  L  R  L  F  *  I  F  I  P  F  W  G  L  *  H  E  S  C  T  H  S  R  V  *  S  N  T  F  F  L  K   : K  K   </second_frame>
            <third_frame>   Y  T  F  S  L  Y  A  Y  L  L  L  F  S  R  S  L  L  S  S  L  S  S  P  N  F  M  I  R  S  V  *  I  V  A  *  S  T  F  W  I  W  I  C  R  V  S  V  P  D  R  R  G  F  V  P  D  R  R  L  T  G  R  M  D  G  W  F  D  I  C  L  F  W  P  T  V  D  E  E  M  V  D  L  M  C  L  C  V  R  L  G  *  M  S  I  V  E  H  Q  I  C  S  V  L  I  D  L  W  R  L  E  K  K  F  Q  Q  P  *  C  Y  H  R  E  G  S  T  V  V  R  K  R  F  I   : G  L  K  I  D  A  R  T  I  G  F  V  R  C  C  H  R  S  S  S  F  D  R  L  S  S  A  K  V  E  S  *  N  V  M  V  N  P  R  L  *  W  F  N  F  D  V  Y  N  Y  L  N  V  L  F  A  *  V  F  I  D  A  C  T  C  T  R  D  K  R  M  S  *  G  C  A  R  F  E  R  K  K  V  R  C  L  L  F  Y  V  A  R  P  L  P  C  W  V  R  S  H  G  R  P  K  V  P  N  K  T  I  F  F  G  V  G  E  E  R  H  R  V  L  P  G  S  P  L  C  V  C  R  L  F  Y  F  F  M  F  F  P  C  S  C  V  Q  Q  S  R  T  D  P  V  V  T  C  F  L  W  T  S  Y  S  C  *  I  A  *  Y  G  D  G  Q  S  N  V  S  T  A  A  L  L  R  G  T  *  S  I  L  H  Y  Q  H  P  Y  I  N  Y  F  S  S  I  I  T  Y  T  V  M  V  I  S  L  I  N  S  C  R  I  I  Q  Q  A  A  Q  S  L  V  F  Y  M  *  S  H  T  A  D  Y  *  S  S  F  K  L  C  H  K  I  F  W  L  V  S  P  L  N  S  M  F  I  S  N  I  T  M  I  F  D  N  L  G  F  M  Y  I  F  F  K  N  E  C  I  S  K  T  K  I  L  T  P  F  K  *  V  L  T  T  K  R  P  I  V  R  P  I  I  L  *  R  I  N  F  K  L  R  *  L  K  P  R  A  S  N  Y  L  A  V  *  L  S  N  L  N  Y  Y  L  N  I  S  R  F  F  S  G  E  Q  D  S  H  L  K  Y  V  M  *  K  A  I  *  K  *  V  L  R  K  N  H  C  H  G  I  T  K  A  S  T  M  S  L  L  V  D  G  C  S  F  S  F  V  L  T  A  L  S  L  G  N  Y  F  V  V  D  E  L  I  P  F  K  L  I  L  *  *  E  *  L  W  R  A  T  L  F  L  L  N  R  D  V  N  V  S  I  Y  G  D  A  D  Y  G  S  P  F  V  *  P  S  G  K  C  I  L  G  R  F  G  I  L  T  V  E  L  I  P  C  T  G  *  I  L  Y  L  I  G  *  W  K  I  C  N  L  E  L  G  N  I  F  V  S  D  S  C  C  L  G  S  H  L  V  V  G  S  V  A  Q  L  M  H  G  C  F  T  W  C  V  L  V  L  F  V  L  L  L  L  L  K  L  K  I  *  R  C  V  C  C  C  W  K  L  N  H  F  G  H  T  V  G  L  F  L  L  H  L  E  T  L  N  F  *  L  L  N  L  L  L  L  L  V  *  I  C  R  V  H  H  *  H  S  M  V  A  W  S  F  F  S  *  Y  T  A  L  K  V  V  A  D  K  F  S  P  L  G  F  Y  *  A  Y  Y  D  A  T  H  E  :  F  R  L  F  L  L  E  W  M  *  G  M  F  S  *  Y  M  T  I  H  S  S  H  E  D  H  A  V  H  L  I  S  P  L  L  K  M  L  I  C  R  T  *  W  F  A  V  P  F  I  Q  Y  *  S  Y  Y  F  W  F  Y  C  E  F  Q  F  S  L  Y  F  F  I  Y  F  *  S  M  S  V  F  A  G  D  V  V  P  W  K  Y  L  L  R  L  A  W  G  V  S  F  G  V  K  G  F  T  S  F  *  Y  Y  N  I  L  S  S  Y  C  G  Y  D  Y  F  R  F  L  Y  L  F  G  D  C  N  M  K  V  V  L  T  H  E  F  D  Q  I  L  F  S  *  R  :  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90884" stop="91240"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVYCFMLPGLCHVGCARMAGQKYLIKLYFLVLERRGTGFCLDLLSVCVASFIFSCSFPAPASNNLAPIQWLLVFYGQVIRVELLNMAMDKATFLLLHSSEVHNQFYIISIHILITFPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92097" stop="92417"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMLSGVPPCGGECCSVDAWMFYLVRSSFVCAVAAVEVEDLKMRLLLLEVKSFWSHCWVVPVTFGNTQLLTPKLVAVACLNLSCASLTQYGSLVILLLIYCTQSCSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90853" stop="91128"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCARFERKKVRCLLFYVARPLPCWVRSHGRPKVPNKTIFFGVGEERHRVLPGSPLCVCRLFYFFMFFPCSCVQQSRTDPVVTCFLWTSYSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90364" stop="90533"/>
                    <exon start="90635" stop="90683"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRDGGSDVFVCSFGIDEHSRASDLFGLNRFVEIGEEVSATLMLSSRGFNRCAQEIYWFEDRCKDYRFCSLLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="90132" e_stop="90533"/>
            <exon e_start="90635" e_stop="93062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.545" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90132" e_stop="90533" e_length="402"/>
          </exon>
          <intron i_serial="1" don_prob="0.545" acc_prob="0.985">
            <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.923">
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91882" stop="92464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91894" stop="92464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91914" stop="92400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91920" stop="92464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91938" stop="92348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91961" stop="92464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92010" stop="92334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92030" stop="92463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92120" stop="92457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92135" stop="92576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92154" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92155" stop="92394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92578" stop="92849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92655" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278275" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92662" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278281" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92691" stop="93059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218315" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92708" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220161" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92711" stop="93035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227897" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92716" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278445" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92719" stop="92928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92773" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278480" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92803" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278475" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92827" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278332" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTATACCTTTTCCCTCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG : GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAACCA</gDNA_template>
            <first_frame> C  I  P  F  P  S  T  P  I  F  F  F  S  P  D  L  F  *  V  V  Y  L  L  Q  I  L  *  S  D  L  C  R  S  L  L  D  L  R  F  G  Y  G  F  A  A  F  L  Y  R  T  A  V  V  L  Y  R  T  G  D  *  R  A  V  W  M  D  G  S  I  F  V  C  S  G  R  R  L  T  K  R  W  W  I  *  C  V  C  V  F  V  W  D  R  *  A  *  S  S  I  R  S  V  R  S  *  *  I  C  G  D  W  R  R  S  F  S  N  L  D  V  I  I  A  R  V  Q  P  L  C  A  R  D  L  L  :  V  *  R  *  M  Q  G  L  S  V  L  F  V  V  V  I  D  Q  A  L  L  T  G  Y  H  R  R  R  L  N  H  R  T  L  W  *  I  Q  G  Y  D  G  L  I  L  M  F  I  I  I  *  M  F  Y  L  L  K  F  L  S  M  H  A  H  V  R  E  I  K  E  *  V  E  V  V  R  G  L  R  G  K  K  *  G  V  Y  C  F  M  L  P  G  L  C  H  V  G  C  A  R  M  A  G  Q  K  Y  L  I  K  L  Y  F  L  V  L  E  R  R  G  T  G  F  C  L  D  L  L  S  V  C  V  A  S  F  I  F  S  C  S  F  P  A  P  A  S  N  N  L  A  P  I  Q  W  L  L  V  F  Y  G  Q  V  I  R  V  E  L  L  N  M  A  M  D  K  A  T  F  L  L  L  H  S  S  E  V  H  N  Q  F  Y  I  I  S  I  H  I  L  I  T  F  P  L  *  S  P  T  Q  *  W  *  Y  L  *  S  I  V  V  E  S  F  N  K  P  H  K  A  *  S  F  I  C  S  H  I  Q  L  I  I  E  A  A  L  N  Y  V  I  K  Y  F  G  W  S  P  L  S  T  L  C  L  Y  P  I  *  P  *  F  L  I  T  *  G  S  C  T  Y  F  S  R  T  N  V  F  Q  K  R  K  Y  *  H  L  L  S  K  Y  *  Q  L  K  D  Q  S  L  D  Q  L  F  C  D  A  S  T  L  S  C  V  S  L  S  L  V  L  V  I  I  *  P  S  S  C  Q  T  *  T  I  I  *  I  L  V  G  F  F  Q  V  N  K  I  R  I  *  N  M  S  C  K  K  P  S  K  N  K  F  C  V  R  T  I  V  M  A  *  P  R  L  Q  L  C  L  F  L  L  M  A  V  L  F  H  L  F  S  R  L  F  H  L  E  I  T  S  L  W  M  S  *  F  L  L  S  *  F  Y  S  R  S  S  C  G  E  P  L  C  F  F  *  I  V  M  *  M  F  Q  S  M  E  M  P  I  M  A  P  L  L  C  S  L  L  G  S  V  F  *  A  G  L  G  F  *  L  L  N  *  F  R  V  L  G  R  S  C  I  *  L  D  D  G  K  F  A  T  *  N  L  G  I  S  L  F  L  I  H  A  V  W  G  P  T  L  W  W  G  V  L  L  S  *  C  M  D  V  L  P  G  A  F  *  F  C  L  C  C  C  C  C  *  S  *  R  S  E  D  A  F  A  A  V  G  S  *  I  I  L  V  T  L  L  G  C  S  C  Y  I  W  K  H  S  T  F  N  S  *  T  C  C  C  C  L  S  E  S  V  V  C  I  I  N  T  V  W  *  P  G  H  S  S  P  D  I  L  H  S  K  L  *  Q  I  N  F  L  P  W  G  F  I  K  H  I  M  M  L  L  M  R  *  I  I  C  L  I  E  D  I  L  L  F  L  S  V  N  I  S  L  N  S  C  I  F  V  F  Y  L  L  Y  W  Y  F  S  L  S  A  V  P  I  V  S  T  R  V  D  V  R  H  V  F  M  I  Y  D  N  S  Q  F  S  *  R  P  C  G  A  F  N  F  S  S  F  E  D  A  D  L  P  Y  L  M  V  C  S  S  I  Y  S  I  L  K  L  L  F  L  V  L  L  *  V  S  V  F  A  L  F  F  Y  L  F  L  E  Y  V  R  V  C  R  R  C  C  P  M  E  V  F  V  E  I  S  M  G  C  V  L  W  R  K  R  F  Y  V  I  L  V  L  *  Y  T  I  E  L  L  W  L  R  L  F  *  I  F  I  P  F  W  G  L  *  H  E  S  C  T  H  S  R  V  *  S  N  T  F  F  L  K  S  V  R  Y  Y  N  S  E  S  L  F  *  T  </first_frame>
            <second_frame>  V  Y  L  F  P  L  R  L  S  S  S  F  L  Q  I  S  S  K  *  F  I  F  S  K  F  Y  D  Q  I  C  V  D  R  C  L  I  Y  V  L  D  M  D  L  P  R  F  C  T  G  P  P  W  F  C  T  G  P  A  T  D  G  P  Y  G  W  M  V  R  Y  L  F  V  L  A  D  G  *  R  R  D  G  G  S  D  V  F  V  C  S  F  G  I  D  E  H  S  R  A  S  D  L  F  G  L  N  R  F  V  E  I  G  E  E  V  S  A  T  L  M  L  S  S  R  G  F  N  R  C  A  Q  E  I  Y  W :   F  E  D  R  C  K  D  Y  R  F  C  S  L  L  S  *  I  K  L  F  *  P  V  I  I  G  E  G  *  I  I  E  R  Y  G  E  S  K  V  M  M  V  *  F  *  C  L  *  L  F  K  C  F  I  C  L  S  F  Y  R  C  M  H  M  Y  E  R  *  K  N  E  L  R  L  C  E  V  *  E  E  K  S  E  V  F  T  V  L  C  C  Q  A  F  A  M  L  G  A  L  A  W  Q  A  K  S  T  *  *  N  Y  I  F  W  C  W  R  G  E  A  Q  G  F  A  W  I  S  S  L  C  V  S  P  L  L  F  F  H  V  L  S  L  L  L  R  P  T  I  S  H  R  S  S  G  Y  L  F  F  M  D  K  L  F  V  L  N  C  L  I  W  R  W  T  K  Q  R  F  Y  C  C  T  P  Q  R  Y  I  I  N  F  T  L  S  A  S  I  Y  *  L  L  F  L  Y  N  H  L  H  S  N  G  N  I  S  N  Q  *  L  *  N  H  S  T  S  R  T  K  L  S  L  L  Y  V  V  T  Y  S  *  L  L  K  Q  L  *  T  M  S  *  N  I  L  A  G  L  P  S  Q  L  Y  V  Y  I  Q  Y  N  H  D  F  *  *  L  R  V  H  V  H  I  F  Q  E  R  M  Y  F  K  N  E  N  I  D  T  F  *  V  S  I  N  N  *  K  T  N  R  *  T  N  Y  S  V  T  H  Q  L  *  V  A  L  A  *  A  S  C  *  *  L  F  S  R  L  A  V  K  L  E  L  L  F  E  Y  *  *  V  F  F  R  *  T  R  F  A  S  K  I  C  H  V  K  S  H  L  K  I  S  S  A  *  E  P  L  S  W  H  N  Q  G  F  N  Y  V  S  S  C  *  W  L  F  F  F  I  C  S  H  G  S  F  T  W  K  L  L  R  C  G  *  V  N  S  F  *  V  N  S  I  V  G  V  V  V  E  S  H  F  V  S  F  K  S  *  C  K  C  F  N  L  W  R  C  R  L  W  L  P  F  C  V  A  F  W  E  V  Y  F  R  Q  V  W  D  F  D  C  *  I  N  S  V  Y  W  V  D  L  V  S  D  W  M  M  E  N  L  Q  L  R  T  W  E  Y  L  C  F  *  F  M  L  S  G  V  P  P  C  G  G  E  C  C  S  V  D  A  W  M  F  Y  L  V  R  S  S  F  V  C  A  V  A  A  V  E  V  E  D  L  K  M  R  L  L  L  L  E  V  K  S  F  W  S  H  C  W  V  V  P  V  T  F  G  N  T  Q  L  L  T  P  K  L  V  A  V  A  C  L  N  L  S  C  A  S  L  T  Q  Y  G  S  L  V  I  L  L  L  I  Y  C  T  Q  S  C  S  R  *  I  F  S  L  G  V  L  L  S  I  L  *  C  Y  S  *  G  K  S  S  V  L  *  K  I  F  F  S  F  C  L  L  I  F  R  *  I  R  V  F  L  Y  F  I  Y  S  I  G  I  F  P  C  L  Q  F  R  L  F  L  L  E  W  M  *  G  M  F  S  *  Y  M  T  I  H  S  S  H  E  D  H  A  V  H  L  I  S  P  L  L  K  M  L  I  C  R  T  *  W  F  A  V  P  F  I  Q  Y  *  S  Y  Y  F  W  F  Y  C  E  F  Q  F  S  L  Y  F  F  I  Y  F  *  S  M  S  V  F  A  G  D  V  V  P  W  K  Y  L  L  R  L  A  W  G  V  S  F  G  V  K  G  F  T  S  F  *  Y  Y  N  I  L  S  S  Y  C  G  Y  D  Y  F  R  F  L  Y  L  F  G  D  C  N  M  K  V  V  L  T  H  E  F  D  Q  I  L  F  S  *  R  V  F  V  I  I  T  L  K  V  C  F  K  P </second_frame>
            <third_frame>   Y  T  F  S  L  Y  A  Y  L  L  L  F  S  R  S  L  L  S  S  L  S  S  P  N  F  M  I  R  S  V  *  I  V  A  *  S  T  F  W  I  W  I  C  R  V  S  V  P  D  R  R  G  F  V  P  D  R  R  L  T  G  R  M  D  G  W  F  D  I  C  L  F  W  P  T  V  D  E  E  M  V  D  L  M  C  L  C  V  R  L  G  *  M  S  I  V  E  H  Q  I  C  S  V  L  I  D  L  W  R  L  E  K  K  F  Q  Q  P  *  C  Y  H  R  E  G  S  T  V  V  R  K  R  F  I   : G  L  K  I  D  A  R  T  I  G  F  V  R  C  C  H  R  S  S  S  F  D  R  L  S  S  A  K  V  E  S  *  N  V  M  V  N  P  R  L  *  W  F  N  F  D  V  Y  N  Y  L  N  V  L  F  A  *  V  F  I  D  A  C  T  C  T  R  D  K  R  M  S  *  G  C  A  R  F  E  R  K  K  V  R  C  L  L  F  Y  V  A  R  P  L  P  C  W  V  R  S  H  G  R  P  K  V  P  N  K  T  I  F  F  G  V  G  E  E  R  H  R  V  L  P  G  S  P  L  C  V  C  R  L  F  Y  F  F  M  F  F  P  C  S  C  V  Q  Q  S  R  T  D  P  V  V  T  C  F  L  W  T  S  Y  S  C  *  I  A  *  Y  G  D  G  Q  S  N  V  S  T  A  A  L  L  R  G  T  *  S  I  L  H  Y  Q  H  P  Y  I  N  Y  F  S  S  I  I  T  Y  T  V  M  V  I  S  L  I  N  S  C  R  I  I  Q  Q  A  A  Q  S  L  V  F  Y  M  *  S  H  T  A  D  Y  *  S  S  F  K  L  C  H  K  I  F  W  L  V  S  P  L  N  S  M  F  I  S  N  I  T  M  I  F  D  N  L  G  F  M  Y  I  F  F  K  N  E  C  I  S  K  T  K  I  L  T  P  F  K  *  V  L  T  T  K  R  P  I  V  R  P  I  I  L  *  R  I  N  F  K  L  R  *  L  K  P  R  A  S  N  Y  L  A  V  *  L  S  N  L  N  Y  Y  L  N  I  S  R  F  F  S  G  E  Q  D  S  H  L  K  Y  V  M  *  K  A  I  *  K  *  V  L  R  K  N  H  C  H  G  I  T  K  A  S  T  M  S  L  L  V  D  G  C  S  F  S  F  V  L  T  A  L  S  L  G  N  Y  F  V  V  D  E  L  I  P  F  K  L  I  L  *  *  E  *  L  W  R  A  T  L  F  L  L  N  R  D  V  N  V  S  I  Y  G  D  A  D  Y  G  S  P  F  V  *  P  S  G  K  C  I  L  G  R  F  G  I  L  T  V  E  L  I  P  C  T  G  *  I  L  Y  L  I  G  *  W  K  I  C  N  L  E  L  G  N  I  F  V  S  D  S  C  C  L  G  S  H  L  V  V  G  S  V  A  Q  L  M  H  G  C  F  T  W  C  V  L  V  L  F  V  L  L  L  L  L  K  L  K  I  *  R  C  V  C  C  C  W  K  L  N  H  F  G  H  T  V  G  L  F  L  L  H  L  E  T  L  N  F  *  L  L  N  L  L  L  L  L  V  *  I  C  R  V  H  H  *  H  S  M  V  A  W  S  F  F  S  *  Y  T  A  L  K  V  V  A  D  K  F  S  P  L  G  F  Y  *  A  Y  Y  D  A  T  H  E  V  N  H  L  S  Y  R  R  Y  S  S  L  S  V  C  *  Y  F  A  E  F  V  Y  F  C  I  L  F  T  L  L  V  F  F  P  V  C  S  S  D  C  F  Y  *  S  G  C  K  A  C  F  H  D  I  *  Q  F  T  V  L  M  K  T  M  R  C  I  *  F  L  L  F  *  R  C  *  F  A  V  P  N  G  L  Q  F  H  L  F  N  I  E  V  I  I  F  G  F  T  V  S  F  S  F  R  S  I  F  L  F  I  S  R  V  C  P  C  L  P  E  M  L  S  H  G  S  I  C  *  D  *  H  G  V  C  P  L  A  *  K  V  L  R  H  F  S  I  I  I  Y  Y  R  V  I  V  V  T  I  I  L  D  F  Y  T  F  L  G  T  V  T  *  K  L  Y  S  L  T  S  L  I  K  Y  F  F  L  K  E  C  S  L  L  *  L  *  K  F  V  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90884" stop="91240"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVYCFMLPGLCHVGCARMAGQKYLIKLYFLVLERRGTGFCLDLLSVCVASFIFSCSFPAPASNNLAPIQWLLVFYGQVIRVELLNMAMDKATFLLLHSSEVHNQFYIISIHILITFPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92097" stop="92417"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMLSGVPPCGGECCSVDAWMFYLVRSSFVCAVAAVEVEDLKMRLLLLEVKSFWSHCWVVPVTFGNTQLLTPKLVAVACLNLSCASLTQYGSLVILLLIYCTQSCSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90853" stop="91128"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCARFERKKVRCLLFYVARPLPCWVRSHGRPKVPNKTIFFGVGEERHRVLPGSPLCVCRLFYFFMFFPCSCVQQSRTDPVVTCFLWTSYSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90364" stop="90533"/>
                    <exon start="90635" stop="90683"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRDGGSDVFVCSFGIDEHSRASDLFGLNRFVEIGEEVSATLMLSSRGFNRCAQEIYWFEDRCKDYRFCSLLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="90132" e_stop="90533"/>
            <exon e_start="90635" e_stop="91463"/>
            <exon e_start="91661" e_stop="92466"/>
            <exon e_start="92580" e_stop="93062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.545" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.851" e_score="0.996"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="0.902"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90132" e_stop="90533" e_length="402"/>
          </exon>
          <intron i_serial="1" don_prob="0.545" acc_prob="0.985">
            <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="90635" e_stop="91463" e_length="829"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.851">
            <gDNA_intron_boundary i_start="91464" i_stop="91660" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="0.902">
            <gDNA_exon_boundary e_start="91661" e_stop="92466" e_length="806"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="92580" e_stop="93062" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90132" stop="90533"/>
              <exon start="90635" stop="90979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90134" stop="90533"/>
              <exon start="90635" stop="90891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90135" stop="90533"/>
              <exon start="90635" stop="90820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90147" stop="90533"/>
              <exon start="90635" stop="90894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90147" stop="90533"/>
              <exon start="90635" stop="90859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <gDNA_exon_coordinates>
              <exon start="92031" stop="92466"/>
              <exon start="92580" stop="92830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92032" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92042" stop="92466"/>
              <exon start="92580" stop="92940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543514" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92043" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542588" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252081" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92066" stop="92466"/>
              <exon start="92580" stop="92793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92086" stop="92466"/>
              <exon start="92580" stop="92920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92086" stop="92466"/>
              <exon start="92580" stop="92634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92087" stop="92466"/>
              <exon start="92580" stop="92660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226675" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92118" stop="92466"/>
              <exon start="92580" stop="92818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92120" stop="92457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92123" stop="92466"/>
              <exon start="92580" stop="92660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226304" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92124" stop="92466"/>
              <exon start="92580" stop="92801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92126" stop="92466"/>
              <exon start="92580" stop="92936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549684" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92129" stop="92466"/>
              <exon start="92580" stop="92916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92136" stop="92466"/>
              <exon start="92580" stop="92696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92139" stop="92466"/>
              <exon start="92580" stop="93048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544325" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92154" stop="92466"/>
              <exon start="92580" stop="92675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92155" stop="92394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92157" stop="92466"/>
              <exon start="92580" stop="92640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92164" stop="92466"/>
              <exon start="92580" stop="92695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92179" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92224" stop="92466"/>
              <exon start="92580" stop="92967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377136" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92235" stop="92466"/>
              <exon start="92580" stop="93025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92245" stop="92466"/>
              <exon start="92580" stop="93047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375252" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92262" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200360" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92288" stop="92466"/>
              <exon start="92580" stop="92931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92288" stop="92466"/>
              <exon start="92580" stop="92919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92292" stop="92466"/>
              <exon start="92580" stop="92759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258018" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92298" stop="92466"/>
              <exon start="92580" stop="92945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92339" stop="92466"/>
              <exon start="92580" stop="93025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299571" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92374" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394668" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92389" stop="92466"/>
              <exon start="92580" stop="93018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258626" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92402" stop="92466"/>
              <exon start="92580" stop="93020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92402" stop="92466"/>
              <exon start="92580" stop="93020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92409" stop="92466"/>
              <exon start="92580" stop="93021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225893" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92419" stop="92466"/>
              <exon start="92580" stop="92934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92429" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220243" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92434" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283025" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92443" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92655" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278275" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92662" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278281" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92691" stop="93059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218315" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92708" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220161" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92711" stop="93035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227897" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92716" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278445" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92719" stop="92928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92773" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278480" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92803" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278475" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92827" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278332" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTATACCTTTTCCCTCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG : GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAA : GTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG : TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAACCA</gDNA_template>
            <first_frame> C  I  P  F  P  S  T  P  I  F  F  F  S  P  D  L  F  *  V  V  Y  L  L  Q  I  L  *  S  D  L  C  R  S  L  L  D  L  R  F  G  Y  G  F  A  A  F  L  Y  R  T  A  V  V  L  Y  R  T  G  D  *  R  A  V  W  M  D  G  S  I  F  V  C  S  G  R  R  L  T  K  R  W  W  I  *  C  V  C  V  F  V  W  D  R  *  A  *  S  S  I  R  S  V  R  S  *  *  I  C  G  D  W  R  R  S  F  S  N  L  D  V  I  I  A  R  V  Q  P  L  C  A  R  D  L  L  :  V  *  R  *  M  Q  G  L  S  V  L  F  V  V  V  I  D  Q  A  L  L  T  G  Y  H  R  R  R  L  N  H  R  T  L  W  *  I  Q  G  Y  D  G  L  I  L  M  F  I  I  I  *  M  F  Y  L  L  K  F  L  S  M  H  A  H  V  R  E  I  K  E  *  V  E  V  V  R  G  L  R  G  K  K  *  G  V  Y  C  F  M  L  P  G  L  C  H  V  G  C  A  R  M  A  G  Q  K  Y  L  I  K  L  Y  F  L  V  L  E  R  R  G  T  G  F  C  L  D  L  L  S  V  C  V  A  S  F  I  F  S  C  S  F  P  A  P  A  S  N  N  L  A  P  I  Q  W  L  L  V  F  Y  G  Q  V  I  R  V  E  L  L  N  M  A  M  D  K  A  T  F  L  L  L  H  S  S  E  V  H  N  Q  F  Y  I  I  S  I  H  I  L  I  T  F  P  L  *  S  P  T  Q  *  W  *  Y  L  *  S  I  V  V  E  S  F  N  K  P  H  K  A  *  S  F  I  C  S  H  I  Q  L  I  I  E  A  A  L  N  Y  V  I  K  Y  F  G  W  S  P  L  S  T  L  C  L  Y  P  I  *  P  *  F  L  I  T  *  G  S  C  T  Y  F  S   : S  E  Q  D  S  H  L  K  Y  V  M  *  K  A  I  *  K  *  V  L  R  K  N  H  C  H  G  I  T  K  A  S  T  M  S  L  L  V  D  G  C  S  F  S  F  V  L  T  A  L  S  L  G  N  Y  F  V  V  D  E  L  I  P  F  K  L  I  L  *  *  E  *  L  W  R  A  T  L  F  L  L  N  R  D  V  N  V  S  I  Y  G  D  A  D  Y  G  S  P  F  V  *  P  S  G  K  C  I  L  G  R  F  G  I  L  T  V  E  L  I  P  C  T  G  *  I  L  Y  L  I  G  *  W  K  I  C  N  L  E  L  G  N  I  F  V  S  D  S  C  C  L  G  S  H  L  V  V  G  S  V  A  Q  L  M  H  G  C  F  T  W  C  V  L  V  L  F  V  L  L  L  L  L  K  L  K  I  *  R  C  V  C  C  C  W  K  L  N  H  F  G  H  T  V  G  L  F  L  L  H  L  E  T  L  N  F  *  L  L  N  L  L  L  L  L  V  *  I  C  R  V  H  H  *  H  S  M  V  A  W  S  F  F  S  *  Y  T  A  L  K  V  V  A  D  K  F  S  P  L  G  F  Y  *  A  Y  Y  D  A  T  H  E  :  F  R  L  F  L  L  E  W  M  *  G  M  F  S  *  Y  M  T  I  H  S  S  H  E  D  H  A  V  H  L  I  S  P  L  L  K  M  L  I  C  R  T  *  W  F  A  V  P  F  I  Q  Y  *  S  Y  Y  F  W  F  Y  C  E  F  Q  F  S  L  Y  F  F  I  Y  F  *  S  M  S  V  F  A  G  D  V  V  P  W  K  Y  L  L  R  L  A  W  G  V  S  F  G  V  K  G  F  T  S  F  *  Y  Y  N  I  L  S  S  Y  C  G  Y  D  Y  F  R  F  L  Y  L  F  G  D  C  N  M  K  V  V  L  T  H  E  F  D  Q  I  L  F  S  *  R  V  F  V  I  I  T  L  K  V  C  F  K  P </first_frame>
            <second_frame>  V  Y  L  F  P  L  R  L  S  S  S  F  L  Q  I  S  S  K  *  F  I  F  S  K  F  Y  D  Q  I  C  V  D  R  C  L  I  Y  V  L  D  M  D  L  P  R  F  C  T  G  P  P  W  F  C  T  G  P  A  T  D  G  P  Y  G  W  M  V  R  Y  L  F  V  L  A  D  G  *  R  R  D  G  G  S  D  V  F  V  C  S  F  G  I  D  E  H  S  R  A  S  D  L  F  G  L  N  R  F  V  E  I  G  E  E  V  S  A  T  L  M  L  S  S  R  G  F  N  R  C  A  Q  E  I  Y  W :   F  E  D  R  C  K  D  Y  R  F  C  S  L  L  S  *  I  K  L  F  *  P  V  I  I  G  E  G  *  I  I  E  R  Y  G  E  S  K  V  M  M  V  *  F  *  C  L  *  L  F  K  C  F  I  C  L  S  F  Y  R  C  M  H  M  Y  E  R  *  K  N  E  L  R  L  C  E  V  *  E  E  K  S  E  V  F  T  V  L  C  C  Q  A  F  A  M  L  G  A  L  A  W  Q  A  K  S  T  *  *  N  Y  I  F  W  C  W  R  G  E  A  Q  G  F  A  W  I  S  S  L  C  V  S  P  L  L  F  F  H  V  L  S  L  L  L  R  P  T  I  S  H  R  S  S  G  Y  L  F  F  M  D  K  L  F  V  L  N  C  L  I  W  R  W  T  K  Q  R  F  Y  C  C  T  P  Q  R  Y  I  I  N  F  T  L  S  A  S  I  Y  *  L  L  F  L  Y  N  H  L  H  S  N  G  N  I  S  N  Q  *  L  *  N  H  S  T  S  R  T  K  L  S  L  L  Y  V  V  T  Y  S  *  L  L  K  Q  L  *  T  M  S  *  N  I  L  A  G  L  P  S  Q  L  Y  V  Y  I  Q  Y  N  H  D  F  *  *  L  R  V  H  V  H  I  F  Q  :  V  N  K  I  R  I  *  N  M  S  C  K  K  P  S  K  N  K  F  C  V  R  T  I  V  M  A  *  P  R  L  Q  L  C  L  F  L  L  M  A  V  L  F  H  L  F  S  R  L  F  H  L  E  I  T  S  L  W  M  S  *  F  L  L  S  *  F  Y  S  R  S  S  C  G  E  P  L  C  F  F  *  I  V  M  *  M  F  Q  S  M  E  M  P  I  M  A  P  L  L  C  S  L  L  G  S  V  F  *  A  G  L  G  F  *  L  L  N  *  F  R  V  L  G  R  S  C  I  *  L  D  D  G  K  F  A  T  *  N  L  G  I  S  L  F  L  I  H  A  V  W  G  P  T  L  W  W  G  V  L  L  S  *  C  M  D  V  L  P  G  A  F  *  F  C  L  C  C  C  C  C  *  S  *  R  S  E  D  A  F  A  A  V  G  S  *  I  I  L  V  T  L  L  G  C  S  C  Y  I  W  K  H  S  T  F  N  S  *  T  C  C  C  C  L  S  E  S  V  V  C  I  I  N  T  V  W  *  P  G  H  S  S  P  D  I  L  H  S  K  L  *  Q  I  N  F  L  P  W  G  F  I  K  H  I  M  M  L  L  M  S :   S  D  C  F  Y  *  S  G  C  K  A  C  F  H  D  I  *  Q  F  T  V  L  M  K  T  M  R  C  I  *  F  L  L  F  *  R  C  *  F  A  V  P  N  G  L  Q  F  H  L  F  N  I  E  V  I  I  F  G  F  T  V  S  F  S  F  R  S  I  F  L  F  I  S  R  V  C  P  C  L  P  E  M  L  S  H  G  S  I  C  *  D  *  H  G  V  C  P  L  A  *  K  V  L  R  H  F  S  I  I  I  Y  Y  R  V  I  V  V  T  I  I  L  D  F  Y  T  F  L  G  T  V  T  *  K  L  Y  S  L  T  S  L  I  K  Y  F  F  L  K  E  C  S  L  L  *  L  *  K  F  V  L  N   </second_frame>
            <third_frame>   Y  T  F  S  L  Y  A  Y  L  L  L  F  S  R  S  L  L  S  S  L  S  S  P  N  F  M  I  R  S  V  *  I  V  A  *  S  T  F  W  I  W  I  C  R  V  S  V  P  D  R  R  G  F  V  P  D  R  R  L  T  G  R  M  D  G  W  F  D  I  C  L  F  W  P  T  V  D  E  E  M  V  D  L  M  C  L  C  V  R  L  G  *  M  S  I  V  E  H  Q  I  C  S  V  L  I  D  L  W  R  L  E  K  K  F  Q  Q  P  *  C  Y  H  R  E  G  S  T  V  V  R  K  R  F  I   : G  L  K  I  D  A  R  T  I  G  F  V  R  C  C  H  R  S  S  S  F  D  R  L  S  S  A  K  V  E  S  *  N  V  M  V  N  P  R  L  *  W  F  N  F  D  V  Y  N  Y  L  N  V  L  F  A  *  V  F  I  D  A  C  T  C  T  R  D  K  R  M  S  *  G  C  A  R  F  E  R  K  K  V  R  C  L  L  F  Y  V  A  R  P  L  P  C  W  V  R  S  H  G  R  P  K  V  P  N  K  T  I  F  F  G  V  G  E  E  R  H  R  V  L  P  G  S  P  L  C  V  C  R  L  F  Y  F  F  M  F  F  P  C  S  C  V  Q  Q  S  R  T  D  P  V  V  T  C  F  L  W  T  S  Y  S  C  *  I  A  *  Y  G  D  G  Q  S  N  V  S  T  A  A  L  L  R  G  T  *  S  I  L  H  Y  Q  H  P  Y  I  N  Y  F  S  S  I  I  T  Y  T  V  M  V  I  S  L  I  N  S  C  R  I  I  Q  Q  A  A  Q  S  L  V  F  Y  M  *  S  H  T  A  D  Y  *  S  S  F  K  L  C  H  K  I  F  W  L  V  S  P  L  N  S  M  F  I  S  N  I  T  M  I  F  D  N  L  G  F  M  Y  I  F  F  K :   *  T  R  F  A  S  K  I  C  H  V  K  S  H  L  K  I  S  S  A  *  E  P  L  S  W  H  N  Q  G  F  N  Y  V  S  S  C  *  W  L  F  F  F  I  C  S  H  G  S  F  T  W  K  L  L  R  C  G  *  V  N  S  F  *  V  N  S  I  V  G  V  V  V  E  S  H  F  V  S  F  K  S  *  C  K  C  F  N  L  W  R  C  R  L  W  L  P  F  C  V  A  F  W  E  V  Y  F  R  Q  V  W  D  F  D  C  *  I  N  S  V  Y  W  V  D  L  V  S  D  W  M  M  E  N  L  Q  L  R  T  W  E  Y  L  C  F  *  F  M  L  S  G  V  P  P  C  G  G  E  C  C  S  V  D  A  W  M  F  Y  L  V  R  S  S  F  V  C  A  V  A  A  V  E  V  E  D  L  K  M  R  L  L  L  L  E  V  K  S  F  W  S  H  C  W  V  V  P  V  T  F  G  N  T  Q  L  L  T  P  K  L  V  A  V  A  C  L  N  L  S  C  A  S  L  T  Q  Y  G  S  L  V  I  L  L  L  I  Y  C  T  Q  S  C  S  R  *  I  F  S  L  G  V  L  L  S  I  L  *  C  Y  S  *   : V  P  I  V  S  T  R  V  D  V  R  H  V  F  M  I  Y  D  N  S  Q  F  S  *  R  P  C  G  A  F  N  F  S  S  F  E  D  A  D  L  P  Y  L  M  V  C  S  S  I  Y  S  I  L  K  L  L  F  L  V  L  L  *  V  S  V  F  A  L  F  F  Y  L  F  L  E  Y  V  R  V  C  R  R  C  C  P  M  E  V  F  V  E  I  S  M  G  C  V  L  W  R  K  R  F  Y  V  I  L  V  L  *  Y  T  I  E  L  L  W  L  R  L  F  *  I  F  I  P  F  W  G  L  *  H  E  S  C  T  H  S  R  V  *  S  N  T  F  F  L  K  S  V  R  Y  Y  N  S  E  S  L  F  *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90884" stop="91240"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVYCFMLPGLCHVGCARMAGQKYLIKLYFLVLERRGTGFCLDLLSVCVASFIFSCSFPAPASNNLAPIQWLLVFYGQVIRVELLNMAMDKATFLLLHSSEVHNQFYIISIHILITFPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92097" stop="92417"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMLSGVPPCGGECCSVDAWMFYLVRSSFVCAVAAVEVEDLKMRLLLLEVKSFWSHCWVVPVTFGNTQLLTPKLVAVACLNLSCASLTQYGSLVILLLIYCTQSCSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90853" stop="91128"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCARFERKKVRCLLFYVARPLPCWVRSHGRPKVPNKTIFFGVGEERHRVLPGSPLCVCRLFYFFMFFPCSCVQQSRTDPVVTCFLWTSYSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90364" stop="90533"/>
                    <exon start="90635" stop="90683"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRDGGSDVFVCSFGIDEHSRASDLFGLNRFVEIGEEVSATLMLSSRGFNRCAQEIYWFEDRCKDYRFCSLLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="90132" e_stop="90533"/>
            <exon e_start="90635" e_stop="91183"/>
            <exon e_start="91661" e_stop="92466"/>
            <exon e_start="92580" e_stop="93062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.545" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.851" e_score="0.998"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="0.902"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90132" e_stop="90533" e_length="402"/>
          </exon>
          <intron i_serial="1" don_prob="0.545" acc_prob="0.985">
            <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="90635" e_stop="91183" e_length="549"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.851">
            <gDNA_intron_boundary i_start="91184" i_stop="91660" i_length="477"/>
          </intron>
          <exon e_serial="3" e_score="0.902">
            <gDNA_exon_boundary e_start="91661" e_stop="92466" e_length="806"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="92580" e_stop="93062" e_length="483"/>
          </exon>
        </exon-intron_info>
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              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252081" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92066" stop="92466"/>
              <exon start="92580" stop="92793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92086" stop="92466"/>
              <exon start="92580" stop="92920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92086" stop="92466"/>
              <exon start="92580" stop="92634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92087" stop="92466"/>
              <exon start="92580" stop="92660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226675" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92118" stop="92466"/>
              <exon start="92580" stop="92818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92120" stop="92457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92123" stop="92466"/>
              <exon start="92580" stop="92660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226304" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92124" stop="92466"/>
              <exon start="92580" stop="92801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92126" stop="92466"/>
              <exon start="92580" stop="92936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549684" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92129" stop="92466"/>
              <exon start="92580" stop="92916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92136" stop="92466"/>
              <exon start="92580" stop="92696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92139" stop="92466"/>
              <exon start="92580" stop="93048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544325" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92154" stop="92466"/>
              <exon start="92580" stop="92675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92155" stop="92394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92157" stop="92466"/>
              <exon start="92580" stop="92640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92164" stop="92466"/>
              <exon start="92580" stop="92695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92179" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92224" stop="92466"/>
              <exon start="92580" stop="92967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377136" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92235" stop="92466"/>
              <exon start="92580" stop="93025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92245" stop="92466"/>
              <exon start="92580" stop="93047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375252" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92262" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200360" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92288" stop="92466"/>
              <exon start="92580" stop="92931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92288" stop="92466"/>
              <exon start="92580" stop="92919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92292" stop="92466"/>
              <exon start="92580" stop="92759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258018" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92298" stop="92466"/>
              <exon start="92580" stop="92945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92339" stop="92466"/>
              <exon start="92580" stop="93025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299571" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92374" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394668" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92389" stop="92466"/>
              <exon start="92580" stop="93018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258626" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92402" stop="92466"/>
              <exon start="92580" stop="93020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92402" stop="92466"/>
              <exon start="92580" stop="93020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92409" stop="92466"/>
              <exon start="92580" stop="93021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225893" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92419" stop="92466"/>
              <exon start="92580" stop="92934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92429" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220243" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92434" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283025" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92443" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92655" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278275" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92662" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278281" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92691" stop="93059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218315" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92708" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220161" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92711" stop="93035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227897" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92716" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278445" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92719" stop="92928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92773" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278480" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92803" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278475" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92827" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278332" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTATACCTTTTCCCTCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG : GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG : GTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG : TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAACCA</gDNA_template>
            <first_frame> C  I  P  F  P  S  T  P  I  F  F  F  S  P  D  L  F  *  V  V  Y  L  L  Q  I  L  *  S  D  L  C  R  S  L  L  D  L  R  F  G  Y  G  F  A  A  F  L  Y  R  T  A  V  V  L  Y  R  T  G  D  *  R  A  V  W  M  D  G  S  I  F  V  C  S  G  R  R  L  T  K  R  W  W  I  *  C  V  C  V  F  V  W  D  R  *  A  *  S  S  I  R  S  V  R  S  *  *  I  C  G  D  W  R  R  S  F  S  N  L  D  V  I  I  A  R  V  Q  P  L  C  A  R  D  L  L  :  V  *  R  *  M  Q  G  L  S  V  L  F  V  V  V  I  D  Q  A  L  L  T  G  Y  H  R  R  R  L  N  H  R  T  L  W  *  I  Q  G  Y  D  G  L  I  L  M  F  I  I  I  *  M  F  Y  L  L  K  F  L  S  M  H  A  H  V  R  E  I  K  E  *  V  E  V  V  R  G  L  R  G  K  K  *  G  V  Y  C  F  M  L  P  G  L  C  H  V  G  C  A  R  M  A  G  Q  K  Y  L  I  K  L  Y  F  L  V  L  E  R  R  G  T  G  F  C  L  D  L  L  S  V  C  V  A  S  F  I  F  S  C  S  F  P  A  P  A  S  N  N  L  A  P  I  Q  W  L  L  V  F  Y  G  Q  V  I  R  V  E  L  L  N  M  A  M  D  K  A  T  F  L  L  L  H  S  S  E  :  V  N  K  I  R  I  *  N  M  S  C  K  K  P  S  K  N  K  F  C  V  R  T  I  V  M  A  *  P  R  L  Q  L  C  L  F  L  L  M  A  V  L  F  H  L  F  S  R  L  F  H  L  E  I  T  S  L  W  M  S  *  F  L  L  S  *  F  Y  S  R  S  S  C  G  E  P  L  C  F  F  *  I  V  M  *  M  F  Q  S  M  E  M  P  I  M  A  P  L  L  C  S  L  L  G  S  V  F  *  A  G  L  G  F  *  L  L  N  *  F  R  V  L  G  R  S  C  I  *  L  D  D  G  K  F  A  T  *  N  L  G  I  S  L  F  L  I  H  A  V  W  G  P  T  L  W  W  G  V  L  L  S  *  C  M  D  V  L  P  G  A  F  *  F  C  L  C  C  C  C  C  *  S  *  R  S  E  D  A  F  A  A  V  G  S  *  I  I  L  V  T  L  L  G  C  S  C  Y  I  W  K  H  S  T  F  N  S  *  T  C  C  C  C  L  S  E  S  V  V  C  I  I  N  T  V  W  *  P  G  H  S  S  P  D  I  L  H  S  K  L  *  Q  I  N  F  L  P  W  G  F  I  K  H  I  M  M  L  L  M  S :   S  D  C  F  Y  *  S  G  C  K  A  C  F  H  D  I  *  Q  F  T  V  L  M  K  T  M  R  C  I  *  F  L  L  F  *  R  C  *  F  A  V  P  N  G  L  Q  F  H  L  F  N  I  E  V  I  I  F  G  F  T  V  S  F  S  F  R  S  I  F  L  F  I  S  R  V  C  P  C  L  P  E  M  L  S  H  G  S  I  C  *  D  *  H  G  V  C  P  L  A  *  K  V  L  R  H  F  S  I  I  I  Y  Y  R  V  I  V  V  T  I  I  L  D  F  Y  T  F  L  G  T  V  T  *  K  L  Y  S  L  T  S  L  I  K  Y  F  F  L  K  E  C  S  L  L  *  L  *  K  F  V  L  N   </first_frame>
            <second_frame>  V  Y  L  F  P  L  R  L  S  S  S  F  L  Q  I  S  S  K  *  F  I  F  S  K  F  Y  D  Q  I  C  V  D  R  C  L  I  Y  V  L  D  M  D  L  P  R  F  C  T  G  P  P  W  F  C  T  G  P  A  T  D  G  P  Y  G  W  M  V  R  Y  L  F  V  L  A  D  G  *  R  R  D  G  G  S  D  V  F  V  C  S  F  G  I  D  E  H  S  R  A  S  D  L  F  G  L  N  R  F  V  E  I  G  E  E  V  S  A  T  L  M  L  S  S  R  G  F  N  R  C  A  Q  E  I  Y  W :   F  E  D  R  C  K  D  Y  R  F  C  S  L  L  S  *  I  K  L  F  *  P  V  I  I  G  E  G  *  I  I  E  R  Y  G  E  S  K  V  M  M  V  *  F  *  C  L  *  L  F  K  C  F  I  C  L  S  F  Y  R  C  M  H  M  Y  E  R  *  K  N  E  L  R  L  C  E  V  *  E  E  K  S  E  V  F  T  V  L  C  C  Q  A  F  A  M  L  G  A  L  A  W  Q  A  K  S  T  *  *  N  Y  I  F  W  C  W  R  G  E  A  Q  G  F  A  W  I  S  S  L  C  V  S  P  L  L  F  F  H  V  L  S  L  L  L  R  P  T  I  S  H  R  S  S  G  Y  L  F  F  M  D  K  L  F  V  L  N  C  L  I  W  R  W  T  K  Q  R  F  Y  C  C  T  P  Q  R :   *  T  R  F  A  S  K  I  C  H  V  K  S  H  L  K  I  S  S  A  *  E  P  L  S  W  H  N  Q  G  F  N  Y  V  S  S  C  *  W  L  F  F  F  I  C  S  H  G  S  F  T  W  K  L  L  R  C  G  *  V  N  S  F  *  V  N  S  I  V  G  V  V  V  E  S  H  F  V  S  F  K  S  *  C  K  C  F  N  L  W  R  C  R  L  W  L  P  F  C  V  A  F  W  E  V  Y  F  R  Q  V  W  D  F  D  C  *  I  N  S  V  Y  W  V  D  L  V  S  D  W  M  M  E  N  L  Q  L  R  T  W  E  Y  L  C  F  *  F  M  L  S  G  V  P  P  C  G  G  E  C  C  S  V  D  A  W  M  F  Y  L  V  R  S  S  F  V  C  A  V  A  A  V  E  V  E  D  L  K  M  R  L  L  L  L  E  V  K  S  F  W  S  H  C  W  V  V  P  V  T  F  G  N  T  Q  L  L  T  P  K  L  V  A  V  A  C  L  N  L  S  C  A  S  L  T  Q  Y  G  S  L  V  I  L  L  L  I  Y  C  T  Q  S  C  S  R  *  I  F  S  L  G  V  L  L  S  I  L  *  C  Y  S  *   : V  P  I  V  S  T  R  V  D  V  R  H  V  F  M  I  Y  D  N  S  Q  F  S  *  R  P  C  G  A  F  N  F  S  S  F  E  D  A  D  L  P  Y  L  M  V  C  S  S  I  Y  S  I  L  K  L  L  F  L  V  L  L  *  V  S  V  F  A  L  F  F  Y  L  F  L  E  Y  V  R  V  C  R  R  C  C  P  M  E  V  F  V  E  I  S  M  G  C  V  L  W  R  K  R  F  Y  V  I  L  V  L  *  Y  T  I  E  L  L  W  L  R  L  F  *  I  F  I  P  F  W  G  L  *  H  E  S  C  T  H  S  R  V  *  S  N  T  F  F  L  K  S  V  R  Y  Y  N  S  E  S  L  F  *  T  </second_frame>
            <third_frame>   Y  T  F  S  L  Y  A  Y  L  L  L  F  S  R  S  L  L  S  S  L  S  S  P  N  F  M  I  R  S  V  *  I  V  A  *  S  T  F  W  I  W  I  C  R  V  S  V  P  D  R  R  G  F  V  P  D  R  R  L  T  G  R  M  D  G  W  F  D  I  C  L  F  W  P  T  V  D  E  E  M  V  D  L  M  C  L  C  V  R  L  G  *  M  S  I  V  E  H  Q  I  C  S  V  L  I  D  L  W  R  L  E  K  K  F  Q  Q  P  *  C  Y  H  R  E  G  S  T  V  V  R  K  R  F  I   : G  L  K  I  D  A  R  T  I  G  F  V  R  C  C  H  R  S  S  S  F  D  R  L  S  S  A  K  V  E  S  *  N  V  M  V  N  P  R  L  *  W  F  N  F  D  V  Y  N  Y  L  N  V  L  F  A  *  V  F  I  D  A  C  T  C  T  R  D  K  R  M  S  *  G  C  A  R  F  E  R  K  K  V  R  C  L  L  F  Y  V  A  R  P  L  P  C  W  V  R  S  H  G  R  P  K  V  P  N  K  T  I  F  F  G  V  G  E  E  R  H  R  V  L  P  G  S  P  L  C  V  C  R  L  F  Y  F  F  M  F  F  P  C  S  C  V  Q  Q  S  R  T  D  P  V  V  T  C  F  L  W  T  S  Y  S  C  *  I  A  *  Y  G  D  G  Q  S  N  V  S  T  A  A  L  L  R   : G  E  Q  D  S  H  L  K  Y  V  M  *  K  A  I  *  K  *  V  L  R  K  N  H  C  H  G  I  T  K  A  S  T  M  S  L  L  V  D  G  C  S  F  S  F  V  L  T  A  L  S  L  G  N  Y  F  V  V  D  E  L  I  P  F  K  L  I  L  *  *  E  *  L  W  R  A  T  L  F  L  L  N  R  D  V  N  V  S  I  Y  G  D  A  D  Y  G  S  P  F  V  *  P  S  G  K  C  I  L  G  R  F  G  I  L  T  V  E  L  I  P  C  T  G  *  I  L  Y  L  I  G  *  W  K  I  C  N  L  E  L  G  N  I  F  V  S  D  S  C  C  L  G  S  H  L  V  V  G  S  V  A  Q  L  M  H  G  C  F  T  W  C  V  L  V  L  F  V  L  L  L  L  L  K  L  K  I  *  R  C  V  C  C  C  W  K  L  N  H  F  G  H  T  V  G  L  F  L  L  H  L  E  T  L  N  F  *  L  L  N  L  L  L  L  L  V  *  I  C  R  V  H  H  *  H  S  M  V  A  W  S  F  F  S  *  Y  T  A  L  K  V  V  A  D  K  F  S  P  L  G  F  Y  *  A  Y  Y  D  A  T  H  E  :  F  R  L  F  L  L  E  W  M  *  G  M  F  S  *  Y  M  T  I  H  S  S  H  E  D  H  A  V  H  L  I  S  P  L  L  K  M  L  I  C  R  T  *  W  F  A  V  P  F  I  Q  Y  *  S  Y  Y  F  W  F  Y  C  E  F  Q  F  S  L  Y  F  F  I  Y  F  *  S  M  S  V  F  A  G  D  V  V  P  W  K  Y  L  L  R  L  A  W  G  V  S  F  G  V  K  G  F  T  S  F  *  Y  Y  N  I  L  S  S  Y  C  G  Y  D  Y  F  R  F  L  Y  L  F  G  D  C  N  M  K  V  V  L  T  H  E  F  D  Q  I  L  F  S  *  R  V  F  V  I  I  T  L  K  V  C  F  K  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90884" stop="91183"/>
                    <exon start="91661" stop="91681"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVYCFMLPGLCHVGCARMAGQKYLIKLYFLVLERRGTGFCLDLLSVCVASFIFSCSFPAPASNNLAPIQWLLVFYGQVIRVELLNMAMDKATFLLLHSSEVNKIRI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92097" stop="92417"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMLSGVPPCGGECCSVDAWMFYLVRSSFVCAVAAVEVEDLKMRLLLLEVKSFWSHCWVVPVTFGNTQLLTPKLVAVACLNLSCASLTQYGSLVILLLIYCTQSCSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90853" stop="91128"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCARFERKKVRCLLFYVARPLPCWVRSHGRPKVPNKTIFFGVGEERHRVLPGSPLCVCRLFYFFMFFPCSCVQQSRTDPVVTCFLWTSYSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90364" stop="90533"/>
                    <exon start="90635" stop="90683"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRDGGSDVFVCSFGIDEHSRASDLFGLNRFVEIGEEVSATLMLSSRGFNRCAQEIYWFEDRCKDYRFCSLLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="90132" e_stop="90533"/>
            <exon e_start="90635" e_stop="91183"/>
            <exon e_start="92032" e_stop="92466"/>
            <exon e_start="92580" e_stop="93062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.545" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.183" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="0.983"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90132" e_stop="90533" e_length="402"/>
          </exon>
          <intron i_serial="1" don_prob="0.545" acc_prob="0.985">
            <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90635" e_stop="91183" e_length="549"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.183">
            <gDNA_intron_boundary i_start="91184" i_stop="92031" i_length="848"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="92032" e_stop="92466" e_length="435"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="92580" e_stop="93062" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90132" stop="90533"/>
              <exon start="90635" stop="90979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90134" stop="90533"/>
              <exon start="90635" stop="90891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90135" stop="90533"/>
              <exon start="90635" stop="90820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90147" stop="90533"/>
              <exon start="90635" stop="90894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90147" stop="90533"/>
              <exon start="90635" stop="90859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90147" stop="90533"/>
              <exon start="90635" stop="90734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90148" stop="90533"/>
              <exon start="90635" stop="91043"/>
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            <referenceDNA id="SGN-E278475" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92827" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278332" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTATACCTTTTCCCTCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG : GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG : ATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG : TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAACCA</gDNA_template>
            <first_frame> C  I  P  F  P  S  T  P  I  F  F  F  S  P  D  L  F  *  V  V  Y  L  L  Q  I  L  *  S  D  L  C  R  S  L  L  D  L  R  F  G  Y  G  F  A  A  F  L  Y  R  T  A  V  V  L  Y  R  T  G  D  *  R  A  V  W  M  D  G  S  I  F  V  C  S  G  R  R  L  T  K  R  W  W  I  *  C  V  C  V  F  V  W  D  R  *  A  *  S  S  I  R  S  V  R  S  *  *  I  C  G  D  W  R  R  S  F  S  N  L  D  V  I  I  A  R  V  Q  P  L  C  A  R  D  L  L  :  V  *  R  *  M  Q  G  L  S  V  L  F  V  V  V  I  D  Q  A  L  L  T  G  Y  H  R  R  R  L  N  H  R  T  L  W  *  I  Q  G  Y  D  G  L  I  L  M  F  I  I  I  *  M  F  Y  L  L  K  F  L  S  M  H  A  H  V  R  E  I  K  E  *  V  E  V  V  R  G  L  R  G  K  K  *  G  V  Y  C  F  M  L  P  G  L  C  H  V  G  C  A  R  M  A  G  Q  K  Y  L  I  K  L  Y  F  L  V  L  E  R  R  G  T  G  F  C  L  D  L  L  S  V  C  V  A  S  F  I  F  S  C  S  F  P  A  P  A  S  N  N  L  A  P  I  Q  W  L  L  V  F  Y  G  Q  V  I  R  V  E  L  L  N  M  A  M  D  K  A  T  F  L  L  L  H  S  S  E  :  I  L  Y  L  I  G  *  W  K  I  C  N  L  E  L  G  N  I  F  V  S  D  S  C  C  L  G  S  H  L  V  V  G  S  V  A  Q  L  M  H  G  C  F  T  W  C  V  L  V  L  F  V  L  L  L  L  L  K  L  K  I  *  R  C  V  C  C  C  W  K  L  N  H  F  G  H  T  V  G  L  F  L  L  H  L  E  T  L  N  F  *  L  L  N  L  L  L  L  L  V  *  I  C  R  V  H  H  *  H  S  M  V  A  W  S  F  F  S  *  Y  T  A  L  K  V  V  A  D  K  F  S  P  L  G  F  Y  *  A  Y  Y  D  A  T  H  E  :  F  R  L  F  L  L  E  W  M  *  G  M  F  S  *  Y  M  T  I  H  S  S  H  E  D  H  A  V  H  L  I  S  P  L  L  K  M  L  I  C  R  T  *  W  F  A  V  P  F  I  Q  Y  *  S  Y  Y  F  W  F  Y  C  E  F  Q  F  S  L  Y  F  F  I  Y  F  *  S  M  S  V  F  A  G  D  V  V  P  W  K  Y  L  L  R  L  A  W  G  V  S  F  G  V  K  G  F  T  S  F  *  Y  Y  N  I  L  S  S  Y  C  G  Y  D  Y  F  R  F  L  Y  L  F  G  D  C  N  M  K  V  V  L  T  H  E  F  D  Q  I  L  F  S  *  R  V  F  V  I  I  T  L  K  V  C  F  K  P </first_frame>
            <second_frame>  V  Y  L  F  P  L  R  L  S  S  S  F  L  Q  I  S  S  K  *  F  I  F  S  K  F  Y  D  Q  I  C  V  D  R  C  L  I  Y  V  L  D  M  D  L  P  R  F  C  T  G  P  P  W  F  C  T  G  P  A  T  D  G  P  Y  G  W  M  V  R  Y  L  F  V  L  A  D  G  *  R  R  D  G  G  S  D  V  F  V  C  S  F  G  I  D  E  H  S  R  A  S  D  L  F  G  L  N  R  F  V  E  I  G  E  E  V  S  A  T  L  M  L  S  S  R  G  F  N  R  C  A  Q  E  I  Y  W :   F  E  D  R  C  K  D  Y  R  F  C  S  L  L  S  *  I  K  L  F  *  P  V  I  I  G  E  G  *  I  I  E  R  Y  G  E  S  K  V  M  M  V  *  F  *  C  L  *  L  F  K  C  F  I  C  L  S  F  Y  R  C  M  H  M  Y  E  R  *  K  N  E  L  R  L  C  E  V  *  E  E  K  S  E  V  F  T  V  L  C  C  Q  A  F  A  M  L  G  A  L  A  W  Q  A  K  S  T  *  *  N  Y  I  F  W  C  W  R  G  E  A  Q  G  F  A  W  I  S  S  L  C  V  S  P  L  L  F  F  H  V  L  S  L  L  L  R  P  T  I  S  H  R  S  S  G  Y  L  F  F  M  D  K  L  F  V  L  N  C  L  I  W  R  W  T  K  Q  R  F  Y  C  C  T  P  Q  R :   S  C  I  *  L  D  D  G  K  F  A  T  *  N  L  G  I  S  L  F  L  I  H  A  V  W  G  P  T  L  W  W  G  V  L  L  S  *  C  M  D  V  L  P  G  A  F  *  F  C  L  C  C  C  C  C  *  S  *  R  S  E  D  A  F  A  A  V  G  S  *  I  I  L  V  T  L  L  G  C  S  C  Y  I  W  K  H  S  T  F  N  S  *  T  C  C  C  C  L  S  E  S  V  V  C  I  I  N  T  V  W  *  P  G  H  S  S  P  D  I  L  H  S  K  L  *  Q  I  N  F  L  P  W  G  F  I  K  H  I  M  M  L  L  M  S :   S  D  C  F  Y  *  S  G  C  K  A  C  F  H  D  I  *  Q  F  T  V  L  M  K  T  M  R  C  I  *  F  L  L  F  *  R  C  *  F  A  V  P  N  G  L  Q  F  H  L  F  N  I  E  V  I  I  F  G  F  T  V  S  F  S  F  R  S  I  F  L  F  I  S  R  V  C  P  C  L  P  E  M  L  S  H  G  S  I  C  *  D  *  H  G  V  C  P  L  A  *  K  V  L  R  H  F  S  I  I  I  Y  Y  R  V  I  V  V  T  I  I  L  D  F  Y  T  F  L  G  T  V  T  *  K  L  Y  S  L  T  S  L  I  K  Y  F  F  L  K  E  C  S  L  L  *  L  *  K  F  V  L  N   </second_frame>
            <third_frame>   Y  T  F  S  L  Y  A  Y  L  L  L  F  S  R  S  L  L  S  S  L  S  S  P  N  F  M  I  R  S  V  *  I  V  A  *  S  T  F  W  I  W  I  C  R  V  S  V  P  D  R  R  G  F  V  P  D  R  R  L  T  G  R  M  D  G  W  F  D  I  C  L  F  W  P  T  V  D  E  E  M  V  D  L  M  C  L  C  V  R  L  G  *  M  S  I  V  E  H  Q  I  C  S  V  L  I  D  L  W  R  L  E  K  K  F  Q  Q  P  *  C  Y  H  R  E  G  S  T  V  V  R  K  R  F  I   : G  L  K  I  D  A  R  T  I  G  F  V  R  C  C  H  R  S  S  S  F  D  R  L  S  S  A  K  V  E  S  *  N  V  M  V  N  P  R  L  *  W  F  N  F  D  V  Y  N  Y  L  N  V  L  F  A  *  V  F  I  D  A  C  T  C  T  R  D  K  R  M  S  *  G  C  A  R  F  E  R  K  K  V  R  C  L  L  F  Y  V  A  R  P  L  P  C  W  V  R  S  H  G  R  P  K  V  P  N  K  T  I  F  F  G  V  G  E  E  R  H  R  V  L  P  G  S  P  L  C  V  C  R  L  F  Y  F  F  M  F  F  P  C  S  C  V  Q  Q  S  R  T  D  P  V  V  T  C  F  L  W  T  S  Y  S  C  *  I  A  *  Y  G  D  G  Q  S  N  V  S  T  A  A  L  L  R   : D  L  V  S  D  W  M  M  E  N  L  Q  L  R  T  W  E  Y  L  C  F  *  F  M  L  S  G  V  P  P  C  G  G  E  C  C  S  V  D  A  W  M  F  Y  L  V  R  S  S  F  V  C  A  V  A  A  V  E  V  E  D  L  K  M  R  L  L  L  L  E  V  K  S  F  W  S  H  C  W  V  V  P  V  T  F  G  N  T  Q  L  L  T  P  K  L  V  A  V  A  C  L  N  L  S  C  A  S  L  T  Q  Y  G  S  L  V  I  L  L  L  I  Y  C  T  Q  S  C  S  R  *  I  F  S  L  G  V  L  L  S  I  L  *  C  Y  S  *   : V  P  I  V  S  T  R  V  D  V  R  H  V  F  M  I  Y  D  N  S  Q  F  S  *  R  P  C  G  A  F  N  F  S  S  F  E  D  A  D  L  P  Y  L  M  V  C  S  S  I  Y  S  I  L  K  L  L  F  L  V  L  L  *  V  S  V  F  A  L  F  F  Y  L  F  L  E  Y  V  R  V  C  R  R  C  C  P  M  E  V  F  V  E  I  S  M  G  C  V  L  W  R  K  R  F  Y  V  I  L  V  L  *  Y  T  I  E  L  L  W  L  R  L  F  *  I  F  I  P  F  W  G  L  *  H  E  S  C  T  H  S  R  V  *  S  N  T  F  F  L  K  S  V  R  Y  Y  N  S  E  S  L  F  *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90884" stop="91183"/>
                    <exon start="92032" stop="92052"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVYCFMLPGLCHVGCARMAGQKYLIKLYFLVLERRGTGFCLDLLSVCVASFIFSCSFPAPASNNLAPIQWLLVFYGQVIRVELLNMAMDKATFLLLHSSEILYLIG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92097" stop="92417"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMLSGVPPCGGECCSVDAWMFYLVRSSFVCAVAAVEVEDLKMRLLLLEVKSFWSHCWVVPVTFGNTQLLTPKLVAVACLNLSCASLTQYGSLVILLLIYCTQSCSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90853" stop="91128"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCARFERKKVRCLLFYVARPLPCWVRSHGRPKVPNKTIFFGVGEERHRVLPGSPLCVCRLFYFFMFFPCSCVQQSRTDPVVTCFLWTSYSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90960" stop="91183"/>
                    <exon start="92032" stop="92044"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYIFWCWRGEAQGFAWISSLCVSPLLFFHVLSLLLRPTISHRSSGYLFFMDKLFVLNCLIWRWTKQRFYCCTPQRSCI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90364" stop="90533"/>
                    <exon start="90635" stop="90683"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRDGGSDVFVCSFGIDEHSRASDLFGLNRFVEIGEEVSATLMLSSRGFNRCAQEIYWFEDRCKDYRFCSLLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="90149" e_stop="90537"/>
            <exon e_start="90635" e_stop="92466"/>
            <exon e_start="92580" e_stop="93062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.985" e_score="0.997"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="0.906"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="90149" e_stop="90537" e_length="389"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="90538" i_stop="90634" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="0.906">
            <gDNA_exon_boundary e_start="90635" e_stop="92466" e_length="1832"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="92580" e_stop="93062" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90149" stop="90439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90149" stop="90317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90151" stop="90413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90152" stop="90511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90152" stop="90505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90152" stop="90490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90152" stop="90375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90153" stop="90328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90154" stop="90467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90154" stop="90456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90154" stop="90333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90155" stop="90418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90156" stop="90498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90157" stop="90481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90157" stop="90387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90157" stop="90386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277157" strand="+"/>
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            <gDNA_exon_coordinates>
              <exon start="92136" stop="92466"/>
              <exon start="92580" stop="92696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92139" stop="92466"/>
              <exon start="92580" stop="93048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544325" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92154" stop="92466"/>
              <exon start="92580" stop="92675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92155" stop="92394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92157" stop="92466"/>
              <exon start="92580" stop="92640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92164" stop="92466"/>
              <exon start="92580" stop="92695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92179" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92224" stop="92466"/>
              <exon start="92580" stop="92967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377136" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92235" stop="92466"/>
              <exon start="92580" stop="93025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92245" stop="92466"/>
              <exon start="92580" stop="93047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375252" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92262" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200360" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92288" stop="92466"/>
              <exon start="92580" stop="92931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92288" stop="92466"/>
              <exon start="92580" stop="92919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92292" stop="92466"/>
              <exon start="92580" stop="92759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258018" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92298" stop="92466"/>
              <exon start="92580" stop="92945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92339" stop="92466"/>
              <exon start="92580" stop="93025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299571" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92374" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394668" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92389" stop="92466"/>
              <exon start="92580" stop="93018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258626" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92402" stop="92466"/>
              <exon start="92580" stop="93020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92402" stop="92466"/>
              <exon start="92580" stop="93020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92409" stop="92466"/>
              <exon start="92580" stop="93021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225893" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92419" stop="92466"/>
              <exon start="92580" stop="92934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92429" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220243" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92434" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283025" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92443" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92655" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278275" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92662" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278281" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92691" stop="93059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218315" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92708" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220161" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92711" stop="93035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227897" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92716" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278445" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92719" stop="92928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92773" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278480" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92803" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278475" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92827" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278332" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGA : GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG : TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAACCA</gDNA_template>
            <first_frame> Y  A  Y  L  L  L  F  S  R  S  L  L  S  S  L  S  S  P  N  F  M  I  R  S  V  *  I  V  A  *  S  T  F  W  I  W  I  C  R  V  S  V  P  D  R  R  G  F  V  P  D  R  R  L  T  G  R  M  D  G  W  F  D  I  C  L  F  W  P  T  V  D  E  E  M  V  D  L  M  C  L  C  V  R  L  G  *  M  S  I  V  E  H  Q  I  C  S  V  L  I  D  L  W  R  L  E  K  K  F  Q  Q  P  *  C  Y  H  R  E  G  S  T  V  V  R  K  R  F  I  G  E :   F  E  D  R  C  K  D  Y  R  F  C  S  L  L  S  *  I  K  L  F  *  P  V  I  I  G  E  G  *  I  I  E  R  Y  G  E  S  K  V  M  M  V  *  F  *  C  L  *  L  F  K  C  F  I  C  L  S  F  Y  R  C  M  H  M  Y  E  R  *  K  N  E  L  R  L  C  E  V  *  E  E  K  S  E  V  F  T  V  L  C  C  Q  A  F  A  M  L  G  A  L  A  W  Q  A  K  S  T  *  *  N  Y  I  F  W  C  W  R  G  E  A  Q  G  F  A  W  I  S  S  L  C  V  S  P  L  L  F  F  H  V  L  S  L  L  L  R  P  T  I  S  H  R  S  S  G  Y  L  F  F  M  D  K  L  F  V  L  N  C  L  I  W  R  W  T  K  Q  R  F  Y  C  C  T  P  Q  R  Y  I  I  N  F  T  L  S  A  S  I  Y  *  L  L  F  L  Y  N  H  L  H  S  N  G  N  I  S  N  Q  *  L  *  N  H  S  T  S  R  T  K  L  S  L  L  Y  V  V  T  Y  S  *  L  L  K  Q  L  *  T  M  S  *  N  I  L  A  G  L  P  S  Q  L  Y  V  Y  I  Q  Y  N  H  D  F  *  *  L  R  V  H  V  H  I  F  Q  E  R  M  Y  F  K  N  E  N  I  D  T  F  *  V  S  I  N  N  *  K  T  N  R  *  T  N  Y  S  V  T  H  Q  L  *  V  A  L  A  *  A  S  C  *  *  L  F  S  R  L  A  V  K  L  E  L  L  F  E  Y  *  *  V  F  F  R  *  T  R  F  A  S  K  I  C  H  V  K  S  H  L  K  I  S  S  A  *  E  P  L  S  W  H  N  Q  G  F  N  Y  V  S  S  C  *  W  L  F  F  F  I  C  S  H  G  S  F  T  W  K  L  L  R  C  G  *  V  N  S  F  *  V  N  S  I  V  G  V  V  V  E  S  H  F  V  S  F  K  S  *  C  K  C  F  N  L  W  R  C  R  L  W  L  P  F  C  V  A  F  W  E  V  Y  F  R  Q  V  W  D  F  D  C  *  I  N  S  V  Y  W  V  D  L  V  S  D  W  M  M  E  N  L  Q  L  R  T  W  E  Y  L  C  F  *  F  M  L  S  G  V  P  P  C  G  G  E  C  C  S  V  D  A  W  M  F  Y  L  V  R  S  S  F  V  C  A  V  A  A  V  E  V  E  D  L  K  M  R  L  L  L  L  E  V  K  S  F  W  S  H  C  W  V  V  P  V  T  F  G  N  T  Q  L  L  T  P  K  L  V  A  V  A  C  L  N  L  S  C  A  S  L  T  Q  Y  G  S  L  V  I  L  L  L  I  Y  C  T  Q  S  C  S  R  *  I  F  S  L  G  V  L  L  S  I  L  *  C  Y  S  *   : V  P  I  V  S  T  R  V  D  V  R  H  V  F  M  I  Y  D  N  S  Q  F  S  *  R  P  C  G  A  F  N  F  S  S  F  E  D  A  D  L  P  Y  L  M  V  C  S  S  I  Y  S  I  L  K  L  L  F  L  V  L  L  *  V  S  V  F  A  L  F  F  Y  L  F  L  E  Y  V  R  V  C  R  R  C  C  P  M  E  V  F  V  E  I  S  M  G  C  V  L  W  R  K  R  F  Y  V  I  L  V  L  *  Y  T  I  E  L  L  W  L  R  L  F  *  I  F  I  P  F  W  G  L  *  H  E  S  C  T  H  S  R  V  *  S  N  T  F  F  L  K  S  V  R  Y  Y  N  S  E  S  L  F  *  T  </first_frame>
            <second_frame>  T  P  I  F  F  F  S  P  D  L  F  *  V  V  Y  L  L  Q  I  L  *  S  D  L  C  R  S  L  L  D  L  R  F  G  Y  G  F  A  A  F  L  Y  R  T  A  V  V  L  Y  R  T  G  D  *  R  A  V  W  M  D  G  S  I  F  V  C  S  G  R  R  L  T  K  R  W  W  I  *  C  V  C  V  F  V  W  D  R  *  A  *  S  S  I  R  S  V  R  S  *  *  I  C  G  D  W  R  R  S  F  S  N  L  D  V  I  I  A  R  V  Q  P  L  C  A  R  D  L  L  V   : S  L  K  I  D  A  R  T  I  G  F  V  R  C  C  H  R  S  S  S  F  D  R  L  S  S  A  K  V  E  S  *  N  V  M  V  N  P  R  L  *  W  F  N  F  D  V  Y  N  Y  L  N  V  L  F  A  *  V  F  I  D  A  C  T  C  T  R  D  K  R  M  S  *  G  C  A  R  F  E  R  K  K  V  R  C  L  L  F  Y  V  A  R  P  L  P  C  W  V  R  S  H  G  R  P  K  V  P  N  K  T  I  F  F  G  V  G  E  E  R  H  R  V  L  P  G  S  P  L  C  V  C  R  L  F  Y  F  F  M  F  F  P  C  S  C  V  Q  Q  S  R  T  D  P  V  V  T  C  F  L  W  T  S  Y  S  C  *  I  A  *  Y  G  D  G  Q  S  N  V  S  T  A  A  L  L  R  G  T  *  S  I  L  H  Y  Q  H  P  Y  I  N  Y  F  S  S  I  I  T  Y  T  V  M  V  I  S  L  I  N  S  C  R  I  I  Q  Q  A  A  Q  S  L  V  F  Y  M  *  S  H  T  A  D  Y  *  S  S  F  K  L  C  H  K  I  F  W  L  V  S  P  L  N  S  M  F  I  S  N  I  T  M  I  F  D  N  L  G  F  M  Y  I  F  F  K  N  E  C  I  S  K  T  K  I  L  T  P  F  K  *  V  L  T  T  K  R  P  I  V  R  P  I  I  L  *  R  I  N  F  K  L  R  *  L  K  P  R  A  S  N  Y  L  A  V  *  L  S  N  L  N  Y  Y  L  N  I  S  R  F  F  S  G  E  Q  D  S  H  L  K  Y  V  M  *  K  A  I  *  K  *  V  L  R  K  N  H  C  H  G  I  T  K  A  S  T  M  S  L  L  V  D  G  C  S  F  S  F  V  L  T  A  L  S  L  G  N  Y  F  V  V  D  E  L  I  P  F  K  L  I  L  *  *  E  *  L  W  R  A  T  L  F  L  L  N  R  D  V  N  V  S  I  Y  G  D  A  D  Y  G  S  P  F  V  *  P  S  G  K  C  I  L  G  R  F  G  I  L  T  V  E  L  I  P  C  T  G  *  I  L  Y  L  I  G  *  W  K  I  C  N  L  E  L  G  N  I  F  V  S  D  S  C  C  L  G  S  H  L  V  V  G  S  V  A  Q  L  M  H  G  C  F  T  W  C  V  L  V  L  F  V  L  L  L  L  L  K  L  K  I  *  R  C  V  C  C  C  W  K  L  N  H  F  G  H  T  V  G  L  F  L  L  H  L  E  T  L  N  F  *  L  L  N  L  L  L  L  L  V  *  I  C  R  V  H  H  *  H  S  M  V  A  W  S  F  F  S  *  Y  T  A  L  K  V  V  A  D  K  F  S  P  L  G  F  Y  *  A  Y  Y  D  A  T  H  E  :  F  R  L  F  L  L  E  W  M  *  G  M  F  S  *  Y  M  T  I  H  S  S  H  E  D  H  A  V  H  L  I  S  P  L  L  K  M  L  I  C  R  T  *  W  F  A  V  P  F  I  Q  Y  *  S  Y  Y  F  W  F  Y  C  E  F  Q  F  S  L  Y  F  F  I  Y  F  *  S  M  S  V  F  A  G  D  V  V  P  W  K  Y  L  L  R  L  A  W  G  V  S  F  G  V  K  G  F  T  S  F  *  Y  Y  N  I  L  S  S  Y  C  G  Y  D  Y  F  R  F  L  Y  L  F  G  D  C  N  M  K  V  V  L  T  H  E  F  D  Q  I  L  F  S  *  R  V  F  V  I  I  T  L  K  V  C  F  K  P </second_frame>
            <third_frame>   R  L  S  S  S  F  L  Q  I  S  S  K  *  F  I  F  S  K  F  Y  D  Q  I  C  V  D  R  C  L  I  Y  V  L  D  M  D  L  P  R  F  C  T  G  P  P  W  F  C  T  G  P  A  T  D  G  P  Y  G  W  M  V  R  Y  L  F  V  L  A  D  G  *  R  R  D  G  G  S  D  V  F  V  C  S  F  G  I  D  E  H  S  R  A  S  D  L  F  G  L  N  R  F  V  E  I  G  E  E  V  S  A  T  L  M  L  S  S  R  G  F  N  R  C  A  Q  E  I  Y  W  *  :  V  *  R  *  M  Q  G  L  S  V  L  F  V  V  V  I  D  Q  A  L  L  T  G  Y  H  R  R  R  L  N  H  R  T  L  W  *  I  Q  G  Y  D  G  L  I  L  M  F  I  I  I  *  M  F  Y  L  L  K  F  L  S  M  H  A  H  V  R  E  I  K  E  *  V  E  V  V  R  G  L  R  G  K  K  *  G  V  Y  C  F  M  L  P  G  L  C  H  V  G  C  A  R  M  A  G  Q  K  Y  L  I  K  L  Y  F  L  V  L  E  R  R  G  T  G  F  C  L  D  L  L  S  V  C  V  A  S  F  I  F  S  C  S  F  P  A  P  A  S  N  N  L  A  P  I  Q  W  L  L  V  F  Y  G  Q  V  I  R  V  E  L  L  N  M  A  M  D  K  A  T  F  L  L  L  H  S  S  E  V  H  N  Q  F  Y  I  I  S  I  H  I  L  I  T  F  P  L  *  S  P  T  Q  *  W  *  Y  L  *  S  I  V  V  E  S  F  N  K  P  H  K  A  *  S  F  I  C  S  H  I  Q  L  I  I  E  A  A  L  N  Y  V  I  K  Y  F  G  W  S  P  L  S  T  L  C  L  Y  P  I  *  P  *  F  L  I  T  *  G  S  C  T  Y  F  S  R  T  N  V  F  Q  K  R  K  Y  *  H  L  L  S  K  Y  *  Q  L  K  D  Q  S  L  D  Q  L  F  C  D  A  S  T  L  S  C  V  S  L  S  L  V  L  V  I  I  *  P  S  S  C  Q  T  *  T  I  I  *  I  L  V  G  F  F  Q  V  N  K  I  R  I  *  N  M  S  C  K  K  P  S  K  N  K  F  C  V  R  T  I  V  M  A  *  P  R  L  Q  L  C  L  F  L  L  M  A  V  L  F  H  L  F  S  R  L  F  H  L  E  I  T  S  L  W  M  S  *  F  L  L  S  *  F  Y  S  R  S  S  C  G  E  P  L  C  F  F  *  I  V  M  *  M  F  Q  S  M  E  M  P  I  M  A  P  L  L  C  S  L  L  G  S  V  F  *  A  G  L  G  F  *  L  L  N  *  F  R  V  L  G  R  S  C  I  *  L  D  D  G  K  F  A  T  *  N  L  G  I  S  L  F  L  I  H  A  V  W  G  P  T  L  W  W  G  V  L  L  S  *  C  M  D  V  L  P  G  A  F  *  F  C  L  C  C  C  C  C  *  S  *  R  S  E  D  A  F  A  A  V  G  S  *  I  I  L  V  T  L  L  G  C  S  C  Y  I  W  K  H  S  T  F  N  S  *  T  C  C  C  C  L  S  E  S  V  V  C  I  I  N  T  V  W  *  P  G  H  S  S  P  D  I  L  H  S  K  L  *  Q  I  N  F  L  P  W  G  F  I  K  H  I  M  M  L  L  M  S :   S  D  C  F  Y  *  S  G  C  K  A  C  F  H  D  I  *  Q  F  T  V  L  M  K  T  M  R  C  I  *  F  L  L  F  *  R  C  *  F  A  V  P  N  G  L  Q  F  H  L  F  N  I  E  V  I  I  F  G  F  T  V  S  F  S  F  R  S  I  F  L  F  I  S  R  V  C  P  C  L  P  E  M  L  S  H  G  S  I  C  *  D  *  H  G  V  C  P  L  A  *  K  V  L  R  H  F  S  I  I  I  Y  Y  R  V  I  V  V  T  I  I  L  D  F  Y  T  F  L  G  T  V  T  *  K  L  Y  S  L  T  S  L  I  K  Y  F  F  L  K  E  C  S  L  L  *  L  *  K  F  V  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90884" stop="91240"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVYCFMLPGLCHVGCARMAGQKYLIKLYFLVLERRGTGFCLDLLSVCVASFIFSCSFPAPASNNLAPIQWLLVFYGQVIRVELLNMAMDKATFLLLHSSEVHNQFYIISIHILITFPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92097" stop="92417"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMLSGVPPCGGECCSVDAWMFYLVRSSFVCAVAAVEVEDLKMRLLLLEVKSFWSHCWVVPVTFGNTQLLTPKLVAVACLNLSCASLTQYGSLVILLLIYCTQSCSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="7" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90853" stop="91128"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCARFERKKVRCLLFYVARPLPCWVRSHGRPKVPNKTIFFGVGEERHRVLPGSPLCVCRLFYFFMFFPCSCVQQSRTDPVVTCFLWTSYSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="90132" e_stop="90533"/>
            <exon e_start="90635" e_stop="91183"/>
            <exon e_start="92143" e_stop="92466"/>
            <exon e_start="92580" e_stop="93062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.545" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.998"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="0.978"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90132" e_stop="90533" e_length="402"/>
          </exon>
          <intron i_serial="1" don_prob="0.545" acc_prob="0.985">
            <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="90635" e_stop="91183" e_length="549"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91184" i_stop="92142" i_length="959"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="92143" e_stop="92466" e_length="324"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="92580" e_stop="93062" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90132" stop="90533"/>
              <exon start="90635" stop="90979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90134" stop="90533"/>
              <exon start="90635" stop="90891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90135" stop="90533"/>
              <exon start="90635" stop="90820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90147" stop="90533"/>
              <exon start="90635" stop="90894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90147" stop="90533"/>
              <exon start="90635" stop="90859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90147" stop="90533"/>
              <exon start="90635" stop="90734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90148" stop="90533"/>
              <exon start="90635" stop="91043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90148" stop="90533"/>
              <exon start="90635" stop="90980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90148" stop="90533"/>
              <exon start="90635" stop="90980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90148" stop="90533"/>
              <exon start="90635" stop="90973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90148" stop="90533"/>
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              <exon start="90635" stop="90837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90328" stop="90533"/>
              <exon start="90635" stop="90699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90329" stop="90533"/>
              <exon start="90635" stop="91088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90348" stop="90533"/>
              <exon start="90635" stop="90859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90349" stop="90533"/>
              <exon start="90635" stop="90872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90349" stop="90533"/>
              <exon start="90635" stop="90839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90354" stop="90533"/>
              <exon start="90635" stop="90971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90355" stop="90533"/>
              <exon start="90635" stop="91077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90396" stop="90533"/>
              <exon start="90635" stop="91183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90396" stop="90533"/>
              <exon start="90635" stop="91108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90414" stop="90533"/>
              <exon start="90635" stop="90982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90433" stop="90533"/>
              <exon start="90635" stop="91086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90433" stop="90533"/>
              <exon start="90635" stop="90814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90456" stop="90533"/>
              <exon start="90635" stop="91057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90471" stop="90533"/>
              <exon start="90635" stop="91183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90480" stop="90533"/>
              <exon start="90635" stop="90861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90484" stop="90533"/>
              <exon start="90635" stop="90982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90513" stop="90533"/>
              <exon start="90635" stop="91118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90521" stop="90533"/>
              <exon start="90635" stop="91119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90521" stop="90533"/>
              <exon start="90635" stop="91054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90531" stop="90533"/>
              <exon start="90635" stop="90971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90635" stop="91172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90647" stop="91086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90649" stop="91110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90653" stop="90827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90694" stop="91054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90706" stop="90973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90708" stop="91074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90712" stop="91150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90721" stop="91175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90739" stop="91176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90766" stop="90966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90826" stop="91170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90844" stop="91112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91061" stop="91183"/>
              <exon start="92143" stop="92466"/>
              <exon start="92580" stop="92718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91061" stop="91183"/>
              <exon start="92143" stop="92466"/>
              <exon start="92580" stop="92718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92154" stop="92466"/>
              <exon start="92580" stop="92675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92155" stop="92394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92157" stop="92466"/>
              <exon start="92580" stop="92640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92164" stop="92466"/>
              <exon start="92580" stop="92695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92179" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92224" stop="92466"/>
              <exon start="92580" stop="92967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377136" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92235" stop="92466"/>
              <exon start="92580" stop="93025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92245" stop="92466"/>
              <exon start="92580" stop="93047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375252" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92262" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200360" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92288" stop="92466"/>
              <exon start="92580" stop="92931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92288" stop="92466"/>
              <exon start="92580" stop="92919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92292" stop="92466"/>
              <exon start="92580" stop="92759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258018" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92298" stop="92466"/>
              <exon start="92580" stop="92945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92339" stop="92466"/>
              <exon start="92580" stop="93025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299571" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92374" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394668" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92389" stop="92466"/>
              <exon start="92580" stop="93018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258626" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92402" stop="92466"/>
              <exon start="92580" stop="93020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92402" stop="92466"/>
              <exon start="92580" stop="93020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92409" stop="92466"/>
              <exon start="92580" stop="93021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225893" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92419" stop="92466"/>
              <exon start="92580" stop="92934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92429" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220243" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92434" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283025" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92443" stop="92466"/>
              <exon start="92580" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92655" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278275" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92662" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278281" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92691" stop="93059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218315" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92708" stop="93023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220161" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92711" stop="93035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227897" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92716" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278445" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92719" stop="92928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92773" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278480" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92803" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278475" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92827" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278332" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTATACCTTTTCCCTCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG : GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG : TTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG : TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAACCA</gDNA_template>
            <first_frame> C  I  P  F  P  S  T  P  I  F  F  F  S  P  D  L  F  *  V  V  Y  L  L  Q  I  L  *  S  D  L  C  R  S  L  L  D  L  R  F  G  Y  G  F  A  A  F  L  Y  R  T  A  V  V  L  Y  R  T  G  D  *  R  A  V  W  M  D  G  S  I  F  V  C  S  G  R  R  L  T  K  R  W  W  I  *  C  V  C  V  F  V  W  D  R  *  A  *  S  S  I  R  S  V  R  S  *  *  I  C  G  D  W  R  R  S  F  S  N  L  D  V  I  I  A  R  V  Q  P  L  C  A  R  D  L  L  :  V  *  R  *  M  Q  G  L  S  V  L  F  V  V  V  I  D  Q  A  L  L  T  G  Y  H  R  R  R  L  N  H  R  T  L  W  *  I  Q  G  Y  D  G  L  I  L  M  F  I  I  I  *  M  F  Y  L  L  K  F  L  S  M  H  A  H  V  R  E  I  K  E  *  V  E  V  V  R  G  L  R  G  K  K  *  G  V  Y  C  F  M  L  P  G  L  C  H  V  G  C  A  R  M  A  G  Q  K  Y  L  I  K  L  Y  F  L  V  L  E  R  R  G  T  G  F  C  L  D  L  L  S  V  C  V  A  S  F  I  F  S  C  S  F  P  A  P  A  S  N  N  L  A  P  I  Q  W  L  L  V  F  Y  G  Q  V  I  R  V  E  L  L  N  M  A  M  D  K  A  T  F  L  L  L  H  S  S  E  :  L  M  H  G  C  F  T  W  C  V  L  V  L  F  V  L  L  L  L  L  K  L  K  I  *  R  C  V  C  C  C  W  K  L  N  H  F  G  H  T  V  G  L  F  L  L  H  L  E  T  L  N  F  *  L  L  N  L  L  L  L  L  V  *  I  C  R  V  H  H  *  H  S  M  V  A  W  S  F  F  S  *  Y  T  A  L  K  V  V  A  D  K  F  S  P  L  G  F  Y  *  A  Y  Y  D  A  T  H  E  :  F  R  L  F  L  L  E  W  M  *  G  M  F  S  *  Y  M  T  I  H  S  S  H  E  D  H  A  V  H  L  I  S  P  L  L  K  M  L  I  C  R  T  *  W  F  A  V  P  F  I  Q  Y  *  S  Y  Y  F  W  F  Y  C  E  F  Q  F  S  L  Y  F  F  I  Y  F  *  S  M  S  V  F  A  G  D  V  V  P  W  K  Y  L  L  R  L  A  W  G  V  S  F  G  V  K  G  F  T  S  F  *  Y  Y  N  I  L  S  S  Y  C  G  Y  D  Y  F  R  F  L  Y  L  F  G  D  C  N  M  K  V  V  L  T  H  E  F  D  Q  I  L  F  S  *  R  V  F  V  I  I  T  L  K  V  C  F  K  P </first_frame>
            <second_frame>  V  Y  L  F  P  L  R  L  S  S  S  F  L  Q  I  S  S  K  *  F  I  F  S  K  F  Y  D  Q  I  C  V  D  R  C  L  I  Y  V  L  D  M  D  L  P  R  F  C  T  G  P  P  W  F  C  T  G  P  A  T  D  G  P  Y  G  W  M  V  R  Y  L  F  V  L  A  D  G  *  R  R  D  G  G  S  D  V  F  V  C  S  F  G  I  D  E  H  S  R  A  S  D  L  F  G  L  N  R  F  V  E  I  G  E  E  V  S  A  T  L  M  L  S  S  R  G  F  N  R  C  A  Q  E  I  Y  W :   F  E  D  R  C  K  D  Y  R  F  C  S  L  L  S  *  I  K  L  F  *  P  V  I  I  G  E  G  *  I  I  E  R  Y  G  E  S  K  V  M  M  V  *  F  *  C  L  *  L  F  K  C  F  I  C  L  S  F  Y  R  C  M  H  M  Y  E  R  *  K  N  E  L  R  L  C  E  V  *  E  E  K  S  E  V  F  T  V  L  C  C  Q  A  F  A  M  L  G  A  L  A  W  Q  A  K  S  T  *  *  N  Y  I  F  W  C  W  R  G  E  A  Q  G  F  A  W  I  S  S  L  C  V  S  P  L  L  F  F  H  V  L  S  L  L  L  R  P  T  I  S  H  R  S  S  G  Y  L  F  F  M  D  K  L  F  V  L  N  C  L  I  W  R  W  T  K  Q  R  F  Y  C  C  T  P  Q  S :   *  C  M  D  V  L  P  G  A  F  *  F  C  L  C  C  C  C  C  *  S  *  R  S  E  D  A  F  A  A  V  G  S  *  I  I  L  V  T  L  L  G  C  S  C  Y  I  W  K  H  S  T  F  N  S  *  T  C  C  C  C  L  S  E  S  V  V  C  I  I  N  T  V  W  *  P  G  H  S  S  P  D  I  L  H  S  K  L  *  Q  I  N  F  L  P  W  G  F  I  K  H  I  M  M  L  L  M  S :   S  D  C  F  Y  *  S  G  C  K  A  C  F  H  D  I  *  Q  F  T  V  L  M  K  T  M  R  C  I  *  F  L  L  F  *  R  C  *  F  A  V  P  N  G  L  Q  F  H  L  F  N  I  E  V  I  I  F  G  F  T  V  S  F  S  F  R  S  I  F  L  F  I  S  R  V  C  P  C  L  P  E  M  L  S  H  G  S  I  C  *  D  *  H  G  V  C  P  L  A  *  K  V  L  R  H  F  S  I  I  I  Y  Y  R  V  I  V  V  T  I  I  L  D  F  Y  T  F  L  G  T  V  T  *  K  L  Y  S  L  T  S  L  I  K  Y  F  F  L  K  E  C  S  L  L  *  L  *  K  F  V  L  N   </second_frame>
            <third_frame>   Y  T  F  S  L  Y  A  Y  L  L  L  F  S  R  S  L  L  S  S  L  S  S  P  N  F  M  I  R  S  V  *  I  V  A  *  S  T  F  W  I  W  I  C  R  V  S  V  P  D  R  R  G  F  V  P  D  R  R  L  T  G  R  M  D  G  W  F  D  I  C  L  F  W  P  T  V  D  E  E  M  V  D  L  M  C  L  C  V  R  L  G  *  M  S  I  V  E  H  Q  I  C  S  V  L  I  D  L  W  R  L  E  K  K  F  Q  Q  P  *  C  Y  H  R  E  G  S  T  V  V  R  K  R  F  I   : G  L  K  I  D  A  R  T  I  G  F  V  R  C  C  H  R  S  S  S  F  D  R  L  S  S  A  K  V  E  S  *  N  V  M  V  N  P  R  L  *  W  F  N  F  D  V  Y  N  Y  L  N  V  L  F  A  *  V  F  I  D  A  C  T  C  T  R  D  K  R  M  S  *  G  C  A  R  F  E  R  K  K  V  R  C  L  L  F  Y  V  A  R  P  L  P  C  W  V  R  S  H  G  R  P  K  V  P  N  K  T  I  F  F  G  V  G  E  E  R  H  R  V  L  P  G  S  P  L  C  V  C  R  L  F  Y  F  F  M  F  F  P  C  S  C  V  Q  Q  S  R  T  D  P  V  V  T  C  F  L  W  T  S  Y  S  C  *  I  A  *  Y  G  D  G  Q  S  N  V  S  T  A  A  L  L  R   : V  D  A  W  M  F  Y  L  V  R  S  S  F  V  C  A  V  A  A  V  E  V  E  D  L  K  M  R  L  L  L  L  E  V  K  S  F  W  S  H  C  W  V  V  P  V  T  F  G  N  T  Q  L  L  T  P  K  L  V  A  V  A  C  L  N  L  S  C  A  S  L  T  Q  Y  G  S  L  V  I  L  L  L  I  Y  C  T  Q  S  C  S  R  *  I  F  S  L  G  V  L  L  S  I  L  *  C  Y  S  *   : V  P  I  V  S  T  R  V  D  V  R  H  V  F  M  I  Y  D  N  S  Q  F  S  *  R  P  C  G  A  F  N  F  S  S  F  E  D  A  D  L  P  Y  L  M  V  C  S  S  I  Y  S  I  L  K  L  L  F  L  V  L  L  *  V  S  V  F  A  L  F  F  Y  L  F  L  E  Y  V  R  V  C  R  R  C  C  P  M  E  V  F  V  E  I  S  M  G  C  V  L  W  R  K  R  F  Y  V  I  L  V  L  *  Y  T  I  E  L  L  W  L  R  L  F  *  I  F  I  P  F  W  G  L  *  H  E  S  C  T  H  S  R  V  *  S  N  T  F  F  L  K  S  V  R  Y  Y  N  S  E  S  L  F  *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90884" stop="91183"/>
                    <exon start="92143" stop="92217"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVYCFMLPGLCHVGCARMAGQKYLIKLYFLVLERRGTGFCLDLLSVCVASFIFSCSFPAPASNNLAPIQWLLVFYGQVIRVELLNMAMDKATFLLLHSSELMHGCFTWCVLVLFVLLLLLKLKI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="8" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91138" stop="91183"/>
                    <exon start="92143" stop="92417"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YGDGQSNVSTAALLRVDAWMFYLVRSSFVCAVAAVEVEDLKMRLLLLEVKSFWSHCWVVPVTFGNTQLLTPKLVAVACLNLSCASLTQYGSLVILLLIYCTQSCSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="8" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90364" stop="90533"/>
                    <exon start="90635" stop="90683"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRDGGSDVFVCSFGIDEHSRASDLFGLNRFVEIGEEVSATLMLSSRGFNRCAQEIYWFEDRCKDYRFCSLLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="93036" PGL_stop="92640"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93036" e_stop="92640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="93036" e_stop="92640" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93036" stop="92715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93002" stop="92640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92965" stop="92651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92820" stop="92670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATAACGAACACTCTTTAAGAAAAAAGTATTTGATCAAACTCGTGAGTGAGTACAACTTTCATGTTACAGTCCCCAAAAAGGTATAAAAATCTAAAATAATCGTAACCACAATAACTCGATAGTATATTATAATACTAAAATGACGTAAAACCTTTTACGCCAAAGGACACACCCCATGCTAATCTCAACAAATACTTCCATGGGACAACATCTCCGGCAAACACGGACATACTCTAGAAATAAATAAAAAAATAGAGCGAAAACTGAAACTCACAGTAAAACCAAAAATAATAACTTCAATATTGAATAAATGGAACTGCAAACCATTAGGTACGGCAAATCAGCATCTTCAAAAGAGGAGAAATTAAATGCACCGCATGGTCTTCATGAGAACT</gDNA_template>
            <first_frame> *  *  R  T  L  F  K  K  K  V  F  D  Q  T  R  E  *  V  Q  L  S  C  Y  S  P  Q  K  G  I  K  I  *  N  N  R  N  H  N  N  S  I  V  Y  Y  N  T  K  M  T  *  N  L  L  R  Q  R  T  H  P  M  L  I  S  T  N  T  S  M  G  Q  H  L  R  Q  T  R  T  Y  S  R  N  K  *  K  N  R  A  K  T  E  T  H  S  K  T  K  N  N  N  F  N  I  E  *  M  E  L  Q  T  I  R  Y  G  K  S  A  S  S  K  E  E  K  L  N  A  P  H  G  L  H  E  N  </first_frame>
            <second_frame>  N  N  E  H  S  L  R  K  K  Y  L  I  K  L  V  S  E  Y  N  F  H  V  T  V  P  K  K  V  *  K  S  K  I  I  V  T  T  I  T  R  *  Y  I  I  I  L  K  *  R  K  T  F  Y  A  K  G  H  T  P  C  *  S  Q  Q  I  L  P  W  D  N  I  S  G  K  H  G  H  T  L  E  I  N  K  K  I  E  R  K  L  K  L  T  V  K  P  K  I  I  T  S  I  L  N  K  W  N  C  K  P  L  G  T  A  N  Q  H  L  Q  K  R  R  N  *  M  H  R  M  V  F  M  R  T </second_frame>
            <third_frame>   I  T  N  T  L  *  E  K  S  I  *  S  N  S  *  V  S  T  T  F  M  L  Q  S  P  K  R  Y  K  N  L  K  *  S  *  P  Q  *  L  D  S  I  L  *  Y  *  N  D  V  K  P  F  T  P  K  D  T  P  H  A  N  L  N  K  Y  F  H  G  T  T  S  P  A  N  T  D  I  L  *  K  *  I  K  K  *  S  E  N  *  N  S  Q  *  N  Q  K  *  *  L  Q  Y  *  I  N  G  T  A  N  H  *  V  R  Q  I  S  I  F  K  R  G  E  I  K  C  T  A  W  S  S  *  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0075G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="103166" PGL_stop="108099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103166" e_stop="103329"/>
            <exon e_start="105426" e_stop="105525"/>
            <exon e_start="106039" e_stop="106215"/>
            <exon e_start="106834" e_stop="106932"/>
            <exon e_start="107035" e_stop="107280"/>
            <exon e_start="107612" e_stop="108099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103166" e_stop="103329" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="103330" i_stop="105425" i_length="2096"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105426" e_stop="105525" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="105526" i_stop="106038" i_length="513"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106039" e_stop="106215" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.996">
            <gDNA_intron_boundary i_start="106216" i_stop="106833" i_length="618"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106834" e_stop="106932" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106933" i_stop="107034" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="107035" e_stop="107280" e_length="246"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.944">
            <gDNA_intron_boundary i_start="107281" i_stop="107611" i_length="331"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="107612" e_stop="108099" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103166" stop="103329"/>
              <exon start="105426" stop="105525"/>
              <exon start="106039" stop="106215"/>
              <exon start="106834" stop="106917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103166" stop="103329"/>
              <exon start="105426" stop="105525"/>
              <exon start="106039" stop="106215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103172" stop="103329"/>
              <exon start="105426" stop="105525"/>
              <exon start="106039" stop="106215"/>
              <exon start="106834" stop="106932"/>
              <exon start="107035" stop="107249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103172" stop="103329"/>
              <exon start="105426" stop="105525"/>
              <exon start="106039" stop="106215"/>
              <exon start="106834" stop="106932"/>
              <exon start="107035" stop="107102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103176" stop="103329"/>
              <exon start="105426" stop="105525"/>
              <exon start="106039" stop="106215"/>
              <exon start="106834" stop="106932"/>
              <exon start="107035" stop="107280"/>
              <exon start="107612" stop="107667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103188" stop="103329"/>
              <exon start="105426" stop="105525"/>
              <exon start="106039" stop="106215"/>
              <exon start="106834" stop="106932"/>
              <exon start="107035" stop="107089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103204" stop="103329"/>
              <exon start="105426" stop="105525"/>
              <exon start="106039" stop="106210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105482" stop="105525"/>
              <exon start="106039" stop="106215"/>
              <exon start="106834" stop="106932"/>
              <exon start="107035" stop="107221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106061" stop="106215"/>
              <exon start="106834" stop="106932"/>
              <exon start="107035" stop="107280"/>
              <exon start="107612" stop="107763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106061" stop="106215"/>
              <exon start="106834" stop="106932"/>
              <exon start="107035" stop="107280"/>
              <exon start="107612" stop="107708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107094" stop="107280"/>
              <exon start="107612" stop="108099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546525" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107252" stop="107280"/>
              <exon start="107612" stop="108081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311395" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTCCTCAGATATAGAGAGAGAAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAGAGGACCTCAAGCTCACTTTTTTGTGCTTCTTCTTCTTCTTCTTCCGTTTCTCGTCAG : GTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAG : GTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG : AATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAG : AACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCCAGAAGGTCAAGAACAGATGGCCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTACCCTGAGAGACTCGCTGCAGCACTTCTGTACAATCCACCGCGACTTTTTGAAACATTTTGGAGG : ATTGTCAAATACTTTATGGATCCCAAAACATTTCAAAAGGTCAAGTTTGTGTATCCAAAGAATAAGGATAGCGCGGAACTGATGAAGTCGTACTTCGACGTTGACAATCTTCCTACTGAGTTTGGAGGAACAGCTACACTGAAATATGATCACGAGGAGTTCTCAAGGCAAATGGCTCAAGATGATGTGAAGGCCGCCAAGTTTTGGGGTTCGGACAAACATCCCCCTGGTCCTGGTGGTAATGGTAATTACTCTGCAGTAGAAGTTGCTCCAGAACCTTAATCACTTACTCTATAAGCCACTGCCTGAGCTTAAATGATTGCAACACTGACAAAGCTCAGTCTCTTATATGCCTAACTAAGTTCAAATAAATAATGAGGAATGTAAGAATCATGTTCACAGACATTAGCTTATTTCAGATGAACTTTAATTGTAGGTTGAACTTTGATTTATGCAGAAATCAAAAAGCACTAAATATTTAAGCCTCA</gDNA_template>
            <first_frame> C  S  S  D  I  E  R  E  R  S  A  *  V  Y  E  L  I  F  L  P  F  I  L  F  F  W  Q  N  L  H  D  I  L  L  K  R  G  P  Q  A  H  F  F  V  L  L  L  L  L  L  P  F  L  V  R :   *  S  S  S  K  R  Q  I  I  V  A  F  T  M  F  R  R  K  N  H  S  N  S  E  Q  G  G  E  D  Q  Q  H  K  :  V  K  E  L  R  A  S  L  G  Q  L  S  G  R  S  A  Q  F  C  T  D  A  C  L  K  R  F  L  E  A  R  N  W  N  V  D  K  A  K  K  M  L  E  E  T  L  K  W  R  L  S  F  K  P  E  E  I  R  W  :  N  E  V  A  K  E  G  E  T  G  K  V  F  K  A  N  F  H  D  R  H  G  R  T  V  L  I  L  R  P  G  M  Q  :  N  T  A  A  L  D  N  Q  M  K  H  L  V  Y  L  I  E  N  A  I  F  N  L  P  E  G  Q  E  Q  M  A  W  L  I  D  F  T  G  W  S  I  T  N  N  V  P  V  K  S  A  R  E  T  I  N  I  L  Q  N  H  Y  P  E  R  L  A  A  A  L  L  Y  N  P  P  R  L  F  E  T  F  W  R  :  I  V  K  Y  F  M  D  P  K  T  F  Q  K  V  K  F  V  Y  P  K  N  K  D  S  A  E  L  M  K  S  Y  F  D  V  D  N  L  P  T  E  F  G  G  T  A  T  L  K  Y  D  H  E  E  F  S  R  Q  M  A  Q  D  D  V  K  A  A  K  F  W  G  S  D  K  H  P  P  G  P  G  G  N  G  N  Y  S  A  V  E  V  A  P  E  P  *  S  L  T  L  *  A  T  A  *  A  *  M  I  A  T  L  T  K  L  S  L  L  Y  A  *  L  S  S  N  K  *  *  G  M  *  E  S  C  S  Q  T  L  A  Y  F  R  *  T  L  I  V  G  *  T  L  I  Y  A  E  I  K  K  H  *  I  F  K  P   </first_frame>
            <second_frame>  A  P  Q  I  *  R  E  K  E  V  R  E  C  M  N  *  F  F  F  H  L  F  Y  F  F  G  R  I  C  M  T  F  C  *  K  E  D  L  K  L  T  F  L  C  F  F  F  F  F  F  R  F  S  S   : G  K  A  Q  V  R  D  K  L  *  *  H  S  P  C  F  V  A  R  T  T  L  I  V  N  R  G  V  R  T  S  S  T  R :   L  R  S  L  G  L  P  W  G  N  S  Q  A  A  V  H  S  S  A  L  M  H  V  *  K  G  F  W  R  H  G  I  G  M  *  I  K  Q  R  R  C  W  R  R  R  L  N  G  D  Y  R  L  N  L  K  K  F  A  G :   M  K  *  R  K  K  V  R  L  G  R  C  L  K  Q  I  F  M  T  A  M  A  G  Q  S  *  Y  Y  G  Q  E  C  R :   T  R  Q  H  *  T  T  R  *  S  I  W  C  I  *  S  R  M  P  F  L  I  C  Q  K  V  K  N  R  W  P  G  *  L  T  S  L  D  G  L  *  P  I  M  F  L  *  N  L  L  A  R  P  S  I  F  C  K  T  T  T  L  R  D  S  L  Q  H  F  C  T  I  H  R  D  F  L  K  H  F  G  G :   L  S  N  T  L  W  I  P  K  H  F  K  R  S  S  L  C  I  Q  R  I  R  I  A  R  N  *  *  S  R  T  S  T  L  T  I  F  L  L  S  L  E  E  Q  L  H  *  N  M  I  T  R  S  S  Q  G  K  W  L  K  M  M  *  R  P  P  S  F  G  V  R  T  N  I  P  L  V  L  V  V  M  V  I  T  L  Q  *  K  L  L  Q  N  L  N  H  L  L  Y  K  P  L  P  E  L  K  *  L  Q  H  *  Q  S  S  V  S  Y  M  P  N  *  V  Q  I  N  N  E  E  C  K  N  H  V  H  R  H  *  L  I  S  D  E  L  *  L  *  V  E  L  *  F  M  Q  K  S  K  S  T  K  Y  L  S  L  </second_frame>
            <third_frame>   L  L  R  Y  R  E  R  K  K  C  V  S  V  *  I  N  F  S  S  I  Y  F  I  F  L  A  E  F  A  *  H  S  V  E  K  R  T  S  S  S  L  F  C  A  S  S  S  S  S  S  V  S  R  Q  :  V  K  L  K  *  E  T  N  Y  S  S  I  H  H  V  S  S  Q  E  P  L  *  *  *  T  G  G  *  G  P  A  A  Q   : G  *  G  A  *  G  F  P  G  A  T  L  R  P  Q  C  T  V  L  H  *  C  M  F  K  K  V  F  G  G  T  E  L  E  C  R  *  S  K  E  D  V  G  G  D  A  *  M  E  I  I  V  *  T  *  R  N  S  L   : E  *  S  S  E  R  R  *  D  W  E  G  V  *  S  K  F  S  *  P  P  W  Q  D  S  P  N  I  T  A  R  N  A   : E  H  G  S  T  R  Q  P  D  E  A  F  G  V  S  N  R  E  C  H  F  *  S  A  R  R  S  R  T  D  G  L  V  N  *  L  H  W  M  V  Y  N  Q  *  C  S  C  K  I  C  S  R  D  H  Q  Y  F  A  K  P  L  P  *  E  T  R  C  S  T  S  V  Q  S  T  A  T  F  *  N  I  L  E   : D  C  Q  I  L  Y  G  S  Q  N  I  S  K  G  Q  V  C  V  S  K  E  *  G  *  R  G  T  D  E  V  V  L  R  R  *  Q  S  S  Y  *  V  W  R  N  S  Y  T  E  I  *  S  R  G  V  L  K  A  N  G  S  R  *  C  E  G  R  Q  V  L  G  F  G  Q  T  S  P  W  S  W  W  *  W  *  L  L  C  S  R  S  C  S  R  T  L  I  T  Y  S  I  S  H  C  L  S  L  N  D  C  N  T  D  K  A  Q  S  L  I  C  L  T  K  F  K  *  I  M  R  N  V  R  I  M  F  T  D  I  S  L  F  Q  M  N  F  N  C  R  L  N  F  D  L  C  R  N  Q  K  A  L  N  I  *  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105430" stop="105525"/>
                    <exon start="106039" stop="106215"/>
                    <exon start="106834" stop="106932"/>
                    <exon start="107035" stop="107280"/>
                    <exon start="107612" stop="107893"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSKRQIIVAFTMFRRKNHSNSEQGGEDQQHKVKELRASLGQLSGRSAQFCTDACLKRFLEARNWNVDKAKKMLEETLKWRLSFKPEEIRWNEVAKEGETGKVFKANFHDRHGRTVLILRPGMQNTAALDNQMKHLVYLIENAIFNLPEGQEQMAWLIDFTGWSITNNVPVKSARETINILQNHYPERLAAALLYNPPRLFETFWRIVKYFMDPKTFQKVKFVYPKNKDSAELMKSYFDVDNLPTEFGGTATLKYDHEEFSRQMAQDDVKAAKFWGSDKHPPGPGGNGNYSAVEVAPEP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="105148" e_stop="105525"/>
            <exon e_start="106039" e_stop="106215"/>
            <exon e_start="106834" e_stop="106932"/>
            <exon e_start="107035" e_stop="107280"/>
            <exon e_start="107612" e_stop="108099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="0.976"/>
          <exon-intron don_prob="0.958" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="105148" e_stop="105525" e_length="378"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="105526" i_stop="106038" i_length="513"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106039" e_stop="106215" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.996">
            <gDNA_intron_boundary i_start="106216" i_stop="106833" i_length="618"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106834" e_stop="106932" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106933" i_stop="107034" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107035" e_stop="107280" e_length="246"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.944">
            <gDNA_intron_boundary i_start="107281" i_stop="107611" i_length="331"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="107612" e_stop="108099" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105148" stop="105525"/>
              <exon start="106039" stop="106215"/>
              <exon start="106834" stop="106932"/>
              <exon start="107035" stop="107105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105482" stop="105525"/>
              <exon start="106039" stop="106215"/>
              <exon start="106834" stop="106932"/>
              <exon start="107035" stop="107221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106061" stop="106215"/>
              <exon start="106834" stop="106932"/>
              <exon start="107035" stop="107280"/>
              <exon start="107612" stop="107763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106061" stop="106215"/>
              <exon start="106834" stop="106932"/>
              <exon start="107035" stop="107280"/>
              <exon start="107612" stop="107708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107094" stop="107280"/>
              <exon start="107612" stop="108099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546525" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107252" stop="107280"/>
              <exon start="107612" stop="108081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311395" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAATTGTTTCGTAATTGGGAAAAGCCTATCTGGGATTAGGCAATATGTTTGCCTTTTTGCCTTGTAGTGATTCTTTTAGAAGCAATAAACTGCATGTAGAGATTTTTGTCACAAATCGTAAGTGTTTTATTCAAATAAAAGGCTGGTTACAACATTCTTGCTTACCAAAGCCAATTCCCCTTGTTTGTTATTGTCTCTGAGAAAAACACCTGCATTGCTACATGGGTAAATTAACTATTAACAATCTGTTGCTTGTTTTATTAATCATTTTTTCAGGTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAG : GTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG : AATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAG : AACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCCAGAAGGTCAAGAACAGATGGCCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTACCCTGAGAGACTCGCTGCAGCACTTCTGTACAATCCACCGCGACTTTTTGAAACATTTTGGAGG : ATTGTCAAATACTTTATGGATCCCAAAACATTTCAAAAGGTCAAGTTTGTGTATCCAAAGAATAAGGATAGCGCGGAACTGATGAAGTCGTACTTCGACGTTGACAATCTTCCTACTGAGTTTGGAGGAACAGCTACACTGAAATATGATCACGAGGAGTTCTCAAGGCAAATGGCTCAAGATGATGTGAAGGCCGCCAAGTTTTGGGGTTCGGACAAACATCCCCCTGGTCCTGGTGGTAATGGTAATTACTCTGCAGTAGAAGTTGCTCCAGAACCTTAATCACTTACTCTATAAGCCACTGCCTGAGCTTAAATGATTGCAACACTGACAAAGCTCAGTCTCTTATATGCCTAACTAAGTTCAAATAAATAATGAGGAATGTAAGAATCATGTTCACAGACATTAGCTTATTTCAGATGAACTTTAATTGTAGGTTGAACTTTGATTTATGCAGAAATCAAAAAGCACTAAATATTTAAGCCTCA</gDNA_template>
            <first_frame> V  N  C  F  V  I  G  K  S  L  S  G  I  R  Q  Y  V  C  L  F  A  L  *  *  F  F  *  K  Q  *  T  A  C  R  D  F  C  H  K  S  *  V  F  Y  S  N  K  R  L  V  T  T  F  L  L  T  K  A  N  S  P  C  L  L  L  S  L  R  K  T  P  A  L  L  H  G  *  I  N  Y  *  Q  S  V  A  C  F  I  N  H  F  F  R  *  S  S  S  K  R  Q  I  I  V  A  F  T  M  F  R  R  K  N  H  S  N  S  E  Q  G  G  E  D  Q  Q  H  K  :  V  K  E  L  R  A  S  L  G  Q  L  S  G  R  S  A  Q  F  C  T  D  A  C  L  K  R  F  L  E  A  R  N  W  N  V  D  K  A  K  K  M  L  E  E  T  L  K  W  R  L  S  F  K  P  E  E  I  R  W  :  N  E  V  A  K  E  G  E  T  G  K  V  F  K  A  N  F  H  D  R  H  G  R  T  V  L  I  L  R  P  G  M  Q  :  N  T  A  A  L  D  N  Q  M  K  H  L  V  Y  L  I  E  N  A  I  F  N  L  P  E  G  Q  E  Q  M  A  W  L  I  D  F  T  G  W  S  I  T  N  N  V  P  V  K  S  A  R  E  T  I  N  I  L  Q  N  H  Y  P  E  R  L  A  A  A  L  L  Y  N  P  P  R  L  F  E  T  F  W  R  :  I  V  K  Y  F  M  D  P  K  T  F  Q  K  V  K  F  V  Y  P  K  N  K  D  S  A  E  L  M  K  S  Y  F  D  V  D  N  L  P  T  E  F  G  G  T  A  T  L  K  Y  D  H  E  E  F  S  R  Q  M  A  Q  D  D  V  K  A  A  K  F  W  G  S  D  K  H  P  P  G  P  G  G  N  G  N  Y  S  A  V  E  V  A  P  E  P  *  S  L  T  L  *  A  T  A  *  A  *  M  I  A  T  L  T  K  L  S  L  L  Y  A  *  L  S  S  N  K  *  *  G  M  *  E  S  C  S  Q  T  L  A  Y  F  R  *  T  L  I  V  G  *  T  L  I  Y  A  E  I  K  K  H  *  I  F  K  P   </first_frame>
            <second_frame>  *  I  V  S  *  L  G  K  A  Y  L  G  L  G  N  M  F  A  F  L  P  C  S  D  S  F  R  S  N  K  L  H  V  E  I  F  V  T  N  R  K  C  F  I  Q  I  K  G  W  L  Q  H  S  C  L  P  K  P  I  P  L  V  C  Y  C  L  *  E  K  H  L  H  C  Y  M  G  K  L  T  I  N  N  L  L  L  V  L  L  I  I  F  S  G  K  A  Q  V  R  D  K  L  *  *  H  S  P  C  F  V  A  R  T  T  L  I  V  N  R  G  V  R  T  S  S  T  R :   L  R  S  L  G  L  P  W  G  N  S  Q  A  A  V  H  S  S  A  L  M  H  V  *  K  G  F  W  R  H  G  I  G  M  *  I  K  Q  R  R  C  W  R  R  R  L  N  G  D  Y  R  L  N  L  K  K  F  A  G :   M  K  *  R  K  K  V  R  L  G  R  C  L  K  Q  I  F  M  T  A  M  A  G  Q  S  *  Y  Y  G  Q  E  C  R :   T  R  Q  H  *  T  T  R  *  S  I  W  C  I  *  S  R  M  P  F  L  I  C  Q  K  V  K  N  R  W  P  G  *  L  T  S  L  D  G  L  *  P  I  M  F  L  *  N  L  L  A  R  P  S  I  F  C  K  T  T  T  L  R  D  S  L  Q  H  F  C  T  I  H  R  D  F  L  K  H  F  G  G :   L  S  N  T  L  W  I  P  K  H  F  K  R  S  S  L  C  I  Q  R  I  R  I  A  R  N  *  *  S  R  T  S  T  L  T  I  F  L  L  S  L  E  E  Q  L  H  *  N  M  I  T  R  S  S  Q  G  K  W  L  K  M  M  *  R  P  P  S  F  G  V  R  T  N  I  P  L  V  L  V  V  M  V  I  T  L  Q  *  K  L  L  Q  N  L  N  H  L  L  Y  K  P  L  P  E  L  K  *  L  Q  H  *  Q  S  S  V  S  Y  M  P  N  *  V  Q  I  N  N  E  E  C  K  N  H  V  H  R  H  *  L  I  S  D  E  L  *  L  *  V  E  L  *  F  M  Q  K  S  K  S  T  K  Y  L  S  L  </second_frame>
            <third_frame>   K  L  F  R  N  W  E  K  P  I  W  D  *  A  I  C  L  P  F  C  L  V  V  I  L  L  E  A  I  N  C  M  *  R  F  L  S  Q  I  V  S  V  L  F  K  *  K  A  G  Y  N  I  L  A  Y  Q  S  Q  F  P  L  F  V  I  V  S  E  K  N  T  C  I  A  T  W  V  N  *  L  L  T  I  C  C  L  F  Y  *  S  F  F  Q  V  K  L  K  *  E  T  N  Y  S  S  I  H  H  V  S  S  Q  E  P  L  *  *  *  T  G  G  *  G  P  A  A  Q   : G  *  G  A  *  G  F  P  G  A  T  L  R  P  Q  C  T  V  L  H  *  C  M  F  K  K  V  F  G  G  T  E  L  E  C  R  *  S  K  E  D  V  G  G  D  A  *  M  E  I  I  V  *  T  *  R  N  S  L   : E  *  S  S  E  R  R  *  D  W  E  G  V  *  S  K  F  S  *  P  P  W  Q  D  S  P  N  I  T  A  R  N  A   : E  H  G  S  T  R  Q  P  D  E  A  F  G  V  S  N  R  E  C  H  F  *  S  A  R  R  S  R  T  D  G  L  V  N  *  L  H  W  M  V  Y  N  Q  *  C  S  C  K  I  C  S  R  D  H  Q  Y  F  A  K  P  L  P  *  E  T  R  C  S  T  S  V  Q  S  T  A  T  F  *  N  I  L  E   : D  C  Q  I  L  Y  G  S  Q  N  I  S  K  G  Q  V  C  V  S  K  E  *  G  *  R  G  T  D  E  V  V  L  R  R  *  Q  S  S  Y  *  V  W  R  N  S  Y  T  E  I  *  S  R  G  V  L  K  A  N  G  S  R  *  C  E  G  R  Q  V  L  G  F  G  Q  T  S  P  W  S  W  W  *  W  *  L  L  C  S  R  S  C  S  R  T  L  I  T  Y  S  I  S  H  C  L  S  L  N  D  C  N  T  D  K  A  Q  S  L  I  C  L  T  K  F  K  *  I  M  R  N  V  R  I  M  F  T  D  I  S  L  F  Q  M  N  F  N  C  R  L  N  F  D  L  C  R  N  Q  K  A  L  N  I  *  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105430" stop="105525"/>
                    <exon start="106039" stop="106215"/>
                    <exon start="106834" stop="106932"/>
                    <exon start="107035" stop="107280"/>
                    <exon start="107612" stop="107893"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSKRQIIVAFTMFRRKNHSNSEQGGEDQQHKVKELRASLGQLSGRSAQFCTDACLKRFLEARNWNVDKAKKMLEETLKWRLSFKPEEIRWNEVAKEGETGKVFKANFHDRHGRTVLILRPGMQNTAALDNQMKHLVYLIENAIFNLPEGQEQMAWLIDFTGWSITNNVPVKSARETINILQNHYPERLAAALLYNPPRLFETFWRIVKYFMDPKTFQKVKFVYPKNKDSAELMKSYFDVDNLPTEFGGTATLKYDHEEFSRQMAQDDVKAAKFWGSDKHPPGPGGNGNYSAVEVAPEP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="111471" PGL_stop="108343"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111471" e_stop="110994"/>
            <exon e_start="108737" e_stop="108343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="0.981"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="111471" e_stop="110994" e_length="478"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="110993" i_stop="108738" i_length="2256"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="108737" e_stop="108343" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111471" stop="110994"/>
              <exon start="108737" stop="108343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733892" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTAATGGTATAAGATGTTCAGTGCACTCGGAAGGAGCCTCTTGCTTTCTTCGAAGGGACCGTGTTGATAAGAAAGCTGAAGAAGCTACATTTGTGAGCACAGATAGTATAAGATTGACTGGGAGTGTGAACTTTGAGGTTTCATATAAAGATGATCTTTTTCTCTCTGGGACTTTGGAGATGGCCAACATCAATGATTCTCAAAACTGTCTTAGGAGATGGAGCATGAACTGTGAATCAGTTATGAGTGCTGGCACGGGATTTCTGAAAGGAAAACATATTGTGGGTTCTGAATCATTGTCACCGACAATTGAAGTCTATGTTACCGGTTGCTTCTCTGGGACACCTATCATCTTAACTAAGACTTTGCAGCTAAATCACAGGAAGAAGCACCATAGAAAGGGTATGTTAGACTCCATTCCGGAGCATGACACTTCTGAACAGCATAAAGAAGTCTCATCTGAACATGATCTGCAG : GTAACAGAATACAACGGAAACTACAAACCAGAAAGCGAAGAAGACTACAACAACATGTACTGGGGACGAACAGAACTTATGGATGGTGAAGACGGAGAAATGTCCTGGTTCAATGCTGGGGTTCGAGTTGGTGTTGGGATTGGCCTTGGCATTTGTGTAGGAGTTGGAGTAGGAGTTGGTTTATTAGTCCGTACTACACGCAACTTAAGAAGGCGCCTTATGTAATTACATAGCATACGTATAAAGGCTAACAATACAGAGATACTGTTTTTAAGAATATATTGTAATTTTTCGACGTTGCTAACCATTTTCTTTTTCATGTGTAATCTGTTTGCTGCATTTTTGTGGTGAGTTGCTAAAGCTGTATGGACATGTTTTTAGGTAATATTGTATCA</gDNA_template>
            <first_frame> S  *  W  Y  K  M  F  S  A  L  G  R  S  L  L  L  S  S  K  G  P  C  *  *  E  S  *  R  S  Y  I  C  E  H  R  *  Y  K  I  D  W  E  C  E  L  *  G  F  I  *  R  *  S  F  S  L  W  D  F  G  D  G  Q  H  Q  *  F  S  K  L  S  *  E  M  E  H  E  L  *  I  S  Y  E  C  W  H  G  I  S  E  R  K  T  Y  C  G  F  *  I  I  V  T  D  N  *  S  L  C  Y  R  L  L  L  W  D  T  Y  H  L  N  *  D  F  A  A  K  S  Q  E  E  A  P  *  K  G  Y  V  R  L  H  S  G  A  *  H  F  *  T  A  *  R  S  L  I  *  T  *  S  A   : G  N  R  I  Q  R  K  L  Q  T  R  K  R  R  R  L  Q  Q  H  V  L  G  T  N  R  T  Y  G  W  *  R  R  R  N  V  L  V  Q  C  W  G  S  S  W  C  W  D  W  P  W  H  L  C  R  S  W  S  R  S  W  F  I  S  P  Y  Y  T  Q  L  K  K  A  P  Y  V  I  T  *  H  T  Y  K  G  *  Q  Y  R  D  T  V  F  K  N  I  L  *  F  F  D  V  A  N  H  F  L  F  H  V  *  S  V  C  C  I  F  V  V  S  C  *  S  C  M  D  M  F  L  G  N  I  V  S </first_frame>
            <second_frame>  V  N  G  I  R  C  S  V  H  S  E  G  A  S  C  F  L  R  R  D  R  V  D  K  K  A  E  E  A  T  F  V  S  T  D  S  I  R  L  T  G  S  V  N  F  E  V  S  Y  K  D  D  L  F  L  S  G  T  L  E  M  A  N  I  N  D  S  Q  N  C  L  R  R  W  S  M  N  C  E  S  V  M  S  A  G  T  G  F  L  K  G  K  H  I  V  G  S  E  S  L  S  P  T  I  E  V  Y  V  T  G  C  F  S  G  T  P  I  I  L  T  K  T  L  Q  L  N  H  R  K  K  H  H  R  K  G  M  L  D  S  I  P  E  H  D  T  S  E  Q  H  K  E  V  S  S  E  H  D  L  Q  :  V  T  E  Y  N  G  N  Y  K  P  E  S  E  E  D  Y  N  N  M  Y  W  G  R  T  E  L  M  D  G  E  D  G  E  M  S  W  F  N  A  G  V  R  V  G  V  G  I  G  L  G  I  C  V  G  V  G  V  G  V  G  L  L  V  R  T  T  R  N  L  R  R  R  L  M  *  L  H  S  I  R  I  K  A  N  N  T  E  I  L  F  L  R  I  Y  C  N  F  S  T  L  L  T  I  F  F  F  M  C  N  L  F  A  A  F  L  W  *  V  A  K  A  V  W  T  C  F  *  V  I  L  Y   </second_frame>
            <third_frame>   L  M  V  *  D  V  Q  C  T  R  K  E  P  L  A  F  F  E  G  T  V  L  I  R  K  L  K  K  L  H  L  *  A  Q  I  V  *  D  *  L  G  V  *  T  L  R  F  H  I  K  M  I  F  F  S  L  G  L  W  R  W  P  T  S  M  I  L  K  T  V  L  G  D  G  A  *  T  V  N  Q  L  *  V  L  A  R  D  F  *  K  E  N  I  L  W  V  L  N  H  C  H  R  Q  L  K  S  M  L  P  V  A  S  L  G  H  L  S  S  *  L  R  L  C  S  *  I  T  G  R  S  T  I  E  R  V  C  *  T  P  F  R  S  M  T  L  L  N  S  I  K  K  S  H  L  N  M  I  C  R :   *  Q  N  T  T  E  T  T  N  Q  K  A  K  K  T  T  T  T  C  T  G  D  E  Q  N  L  W  M  V  K  T  E  K  C  P  G  S  M  L  G  F  E  L  V  L  G  L  A  L  A  F  V  *  E  L  E  *  E  L  V  Y  *  S  V  L  H  A  T  *  E  G  A  L  C  N  Y  I  A  Y  V  *  R  L  T  I  Q  R  Y  C  F  *  E  Y  I  V  I  F  R  R  C  *  P  F  S  F  S  C  V  I  C  L  L  H  F  C  G  E  L  L  K  L  Y  G  H  V  F  R  *  Y  C  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111470" stop="110994"/>
                    <exon start="108737" stop="108513"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNGIRCSVHSEGASCFLRRDRVDKKAEEATFVSTDSIRLTGSVNFEVSYKDDLFLSGTLEMANINDSQNCLRRWSMNCESVMSAGTGFLKGKHIVGSESLSPTIEVYVTGCFSGTPIILTKTLQLNHRKKHHRKGMLDSIPEHDTSEQHKEVSSEHDLQVTEYNGNYKPESEEDYNNMYWGRTELMDGEDGEMSWFNAGVRVGVGIGLGICVGVGVGVGLLVRTTRNLRRRLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="109305" e_stop="108588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="109305" e_stop="108588" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109305" stop="108588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342895" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGTGCTATCCATCTTTCATGATTAACTTTAGAAATGCTATGATATATGAATTCTGCTTCTGATGATAACACTTAGCTCCTTGCTCTGATGTTGTGTGATTGAATAGTGCCATCCAGTTTTGTTCTTACATTTTTTTGCACTCCATATGGCAACCTTAGTGACATTTGTTTCTTTTGGGATATCGAATCCATTACGTGACGAACATTAGCTTGTTATACGTCAACGTTGTTCCAAACTCAAGTTGACTTTTCTTGAAAGTAAATCCAAAGTTTGAAAGTTTCAGCTCATGTGTAAGTATTGCCTATGTGCTGCTTTAATTTTTGAAGTTGACAAAAATTAGTTGCATTTCATCTACAGTTTCTGATTGTTAAGTTTTCTGTGTCGTTTCGATTGAAAAATATTATCATGGCAGTGGTTGGTTTTAGTAATTCTTTAGTACTTGTTTATTTTGAACCACAAAGTAGAGTTCCACAGGTGCAATTAATTAGATGAATCCCACAGCTTCTCAGATGTGTAATTACATGATGGAAACTGCACAGGTTCTGAAGTTCATTGTGTTTCACAGGTAACAGAATACAACGGAAACTACAAACCAGAAAGCGAAGAAGACTACAACAACATGTACTGGGGACGAACAGAACTTATGGATGGTGAAGACGGAGAAATGTCCTGGTTCAATGCTGGGGTTCGAGTTGGTGTTGGGATTGGCCTTGGC</gDNA_template>
            <first_frame> S  R  A  I  H  L  S  *  L  T  L  E  M  L  *  Y  M  N  S  A  S  D  D  N  T  *  L  L  A  L  M  L  C  D  *  I  V  P  S  S  F  V  L  T  F  F  C  T  P  Y  G  N  L  S  D  I  C  F  F  W  D  I  E  S  I  T  *  R  T  L  A  C  Y  T  S  T  L  F  Q  T  Q  V  D  F  S  *  K  *  I  Q  S  L  K  V  S  A  H  V  *  V  L  P  M  C  C  F  N  F  *  S  *  Q  K  L  V  A  F  H  L  Q  F  L  I  V  K  F  S  V  S  F  R  L  K  N  I  I  M  A  V  V  G  F  S  N  S  L  V  L  V  Y  F  E  P  Q  S  R  V  P  Q  V  Q  L  I  R  *  I  P  Q  L  L  R  C  V  I  T  *  W  K  L  H  R  F  *  S  S  L  C  F  T  G  N  R  I  Q  R  K  L  Q  T  R  K  R  R  R  L  Q  Q  H  V  L  G  T  N  R  T  Y  G  W  *  R  R  R  N  V  L  V  Q  C  W  G  S  S  W  C  W  D  W  P  W  </first_frame>
            <second_frame>  H  V  L  S  I  F  H  D  *  L  *  K  C  Y  D  I  *  I  L  L  L  M  I  T  L  S  S  L  L  *  C  C  V  I  E  *  C  H  P  V  L  F  L  H  F  F  A  L  H  M  A  T  L  V  T  F  V  S  F  G  I  S  N  P  L  R  D  E  H  *  L  V  I  R  Q  R  C  S  K  L  K  L  T  F  L  E  S  K  S  K  V  *  K  F  Q  L  M  C  K  Y  C  L  C  A  A  L  I  F  E  V  D  K  N  *  L  H  F  I  Y  S  F  *  L  L  S  F  L  C  R  F  D  *  K  I  L  S  W  Q  W  L  V  L  V  I  L  *  Y  L  F  I  L  N  H  K  V  E  F  H  R  C  N  *  L  D  E  S  H  S  F  S  D  V  *  L  H  D  G  N  C  T  G  S  E  V  H  C  V  S  Q  V  T  E  Y  N  G  N  Y  K  P  E  S  E  E  D  Y  N  N  M  Y  W  G  R  T  E  L  M  D  G  E  D  G  E  M  S  W  F  N  A  G  V  R  V  G  V  G  I  G  L  G </second_frame>
            <third_frame>   T  C  Y  P  S  F  M  I  N  F  R  N  A  M  I  Y  E  F  C  F  *  *  *  H  L  A  P  C  S  D  V  V  *  L  N  S  A  I  Q  F  C  S  Y  I  F  L  H  S  I  W  Q  P  *  *  H  L  F  L  L  G  Y  R  I  H  Y  V  T  N  I  S  L  L  Y  V  N  V  V  P  N  S  S  *  L  F  L  K  V  N  P  K  F  E  S  F  S  S  C  V  S  I  A  Y  V  L  L  *  F  L  K  L  T  K  I  S  C  I  S  S  T  V  S  D  C  *  V  F  C  V  V  S  I  E  K  Y  Y  H  G  S  G  W  F  *  *  F  F  S  T  C  L  F  *  T  T  K  *  S  S  T  G  A  I  N  *  M  N  P  T  A  S  Q  M  C  N  Y  M  M  E  T  A  Q  V  L  K  F  I  V  F  H  R  *  Q  N  T  T  E  T  T  N  Q  K  A  K  K  T  T  T  T  C  T  G  D  E  Q  N  L  W  M  V  K  T  E  K  C  P  G  S  M  L  G  F  E  L  V  L  G  L  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108785" stop="108588"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHDGNCTGSEVHCVSQVTEYNGNYKPESEEDYNNMYWGRTELMDGEDGEMSWFNAGVRVGVGIGLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="117685" PGL_stop="119965"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117692" e_stop="117794"/>
            <exon e_start="119305" e_stop="119952"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.662" e_score="0.981"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="117692" e_stop="117794" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.662">
            <gDNA_intron_boundary i_start="117795" i_stop="119304" i_length="1510"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="119305" e_stop="119952" e_length="648"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117692" stop="117794"/>
              <exon start="119305" stop="119952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117692" stop="117794"/>
              <exon start="119305" stop="119952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117692" stop="117794"/>
              <exon start="119305" stop="119843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117692" stop="117794"/>
              <exon start="119305" stop="119824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117696" stop="117794"/>
              <exon start="119305" stop="119461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117747" stop="117794"/>
              <exon start="119305" stop="119807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAA : ATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCTGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATCGATCGATGATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGCTAGTTTTTAATTTTTTTTTAATTTTGTTGTTTAGTATGTCTATTTTAATTGTGAGGAATATTTTAGTTAGGGAGCAATTGTTATTAGCTTTACACTCTGGATTGAATTGTGATATGTCACATTAATGA</gDNA_template>
            <first_frame> L  Y  V  K  M  K  G  F  A  *  H  Q  K  S  *  T  H  E  L  F  L  M  K  K  K  I  L  L  A  L  P  S  H  K   : N  *  W  E  R  R  K  L  *  R  K  Q  K  S  Y  Q  *  Q  *  Q  N  H  Q  Q  *  V  E  I  H  N  N  N  N  K  L  L  L  E  K  E  E  D  Q  E  R  L  L  V  L  *  K  K  M  K  K  K  F  L  L  N  *  R  N  S  K  Q  M  K  L  K  N  H  K  V  K  T  K  K  K  M  N  L  K  R  I  K  I  Y  N  H  K  S  N  N  L  Q  G  A  E  L  E  E  K  A  N  Q  E  R  V  A  N  L  I  F  S  D  Q  Q  Y  S  H  L  S  S  N  D  V  T  L  N  R  S  M  I  D  V  L  N  Y  L  S  Y  *  N  S  C  V  K  N  P  L  F  L  L  G  N  F  *  N  K  V  I  S  S  F  L  V  *  F  L  S  A  I  A  S  F  *  F  F  F  N  F  V  V  *  Y  V  Y  F  N  C  E  E  Y  F  S  *  G  A  I  V  I  S  F  T  L  W  I  E  L  *  Y  V  T  L  M  </first_frame>
            <second_frame>  C  M  *  R  *  K  V  L  L  S  T  K  R  A  K  H  M  S  Y  F  L  *  K  K  K  Y  Y  *  L  Y  H  L  I  K  :  I  D  G  K  E  E  S  C  E  E  N  K  R  V  I  S  S  N  S  R  I  I  S  N  E  W  R  F  T  T  T  T  T  N  Y  S  *  K  K  R  K  T  K  K  D  Y  *  Y  C  K  R  R  *  R  R  S  F  C  *  I  K  E  T  Q  N  K  *  S  *  R  I  T  R  *  K  Q  K  R  R  *  I  *  R  G  *  K  F  T  T  T  K  A  T  T  Y  K  E  Q  S  *  K  K  K  Q  T  K  K  E  L  L  I  *  F  F  L  I  N  S  I  P  T  Y  P  L  T  M  *  L  *  I  D  R  *  *  M  C  *  T  T  *  A  T  K  I  H  V  S  R  I  P  F  F  F  *  V  I  F  E  T  K  *  F  H  L  S  *  F  N  F  L  V  L  *  L  V  F  N  F  F  L  I  L  L  F  S  M  S  I  L  I  V  R  N  I  L  V  R  E  Q  L  L  L  A  L  H  S  G  L  N  C  D  M  S  H  *  * </second_frame>
            <third_frame>   V  C  K  D  E  R  F  C  L  A  P  K  E  L  N  T  *  V  I  S  Y  E  K  K  N  I  I  S  S  T  I  S  *  K :   L  M  G  K  K  K  V  V  K  K  T  K  E  L  S  V  A  I  A  E  S  S  A  M  S  G  D  S  Q  Q  Q  Q  Q  I  T  P  R  K  R  G  R  P  R  K  I  I  S  I  V  K  E  D  E  E  E  V  S  A  E  L  K  K  L  K  T  N  E  V  E  E  S  Q  G  E  N  K  K  E  D  E  F  E  E  D  K  N  L  Q  P  Q  K  Q  Q  P  T  R  S  R  A  R  R  K  S  K  P  R  K  S  C  *  F  N  F  F  *  S  T  V  F  P  L  I  L  *  R  C  D  S  E  S  I  D  D  R  C  A  K  L  L  E  L  L  K  F  M  C  Q  E  S  P  F  S  F  R  *  F  L  K  Q  S  N  F  I  F  P  S  L  I  S  *  C  Y  S  *  F  L  I  F  F  *  F  C  C  L  V  C  L  F  *  L  *  G  I  F  *  L  G  S  N  C  Y  *  L  Y  T  L  D  *  I  V  I  C  H  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117793" stop="117794"/>
                    <exon start="119305" stop="119635"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLMGKKKVVKKTKELSVAIAESSAMSGDSQQQQQITPRKRGRPRKIISIVKEDEEEVSAELKKLKTNEVEESQGENKKEDEFEEDKNLQPQKQQPTRSRARRKSKPRKSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119487" stop="119732"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNSKQMKLKNHKVKTKKKMNLKRIKIYNHKSNNLQGAELEEKANQERVANLIFSDQQYSHLSSNDVTLNRSMIDVLNYLSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="117685" e_stop="117794"/>
            <exon e_start="119290" e_stop="119965"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.897" e_score="0.982"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="117685" e_stop="117794" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.897">
            <gDNA_intron_boundary i_start="117795" i_stop="119289" i_length="1495"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="119290" e_stop="119965" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117685" stop="117794"/>
              <exon start="119290" stop="119612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117687" stop="117794"/>
              <exon start="119290" stop="119965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119301" stop="119874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284996" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGGTTTTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAA : TGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCTGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATCGATCGATGATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGCTAGTTTTTAATTTTTTTTTAATTTTGTTGTTTAGTATGTCTATTTTAATTGTGAGGAATATTTTAGTTAGGGAGCAATTGTTATTAGCTTTACACTCTGGATTGAATTGTGATATGTCACATTAATGAATTTTTGTGTTAA</gDNA_template>
            <first_frame> Y  G  F  V  C  K  D  E  R  F  C  L  A  P  K  E  L  N  T  *  V  I  S  Y  E  K  K  N  I  I  S  S  T  I  S  *  N :   G  L  S  Q  R  L  M  G  K  K  K  V  V  K  K  T  K  E  L  S  V  A  I  A  E  S  S  A  M  S  G  D  S  Q  Q  Q  Q  Q  I  T  P  R  K  R  G  R  P  R  K  I  I  S  I  V  K  E  D  E  E  E  V  S  A  E  L  K  K  L  K  T  N  E  V  E  E  S  Q  G  E  N  K  K  E  D  E  F  E  E  D  K  N  L  Q  P  Q  K  Q  Q  P  T  R  S  R  A  R  R  K  S  K  P  R  K  S  C  *  F  N  F  F  *  S  T  V  F  P  L  I  L  *  R  C  D  S  E  S  I  D  D  R  C  A  K  L  L  E  L  L  K  F  M  C  Q  E  S  P  F  S  F  R  *  F  L  K  Q  S  N  F  I  F  P  S  L  I  S  *  C  Y  S  *  F  L  I  F  F  *  F  C  C  L  V  C  L  F  *  L  *  G  I  F  *  L  G  S  N  C  Y  *  L  Y  T  L  D  *  I  V  I  C  H  I  N  E  F  L  C  * </first_frame>
            <second_frame>  M  V  L  Y  V  K  M  K  G  F  A  *  H  Q  K  S  *  T  H  E  L  F  L  M  K  K  K  I  L  L  A  L  P  S  H  K   : M  D  C  H  K  D  *  W  E  R  R  K  L  *  R  K  Q  K  S  Y  Q  *  Q  *  Q  N  H  Q  Q  *  V  E  I  H  N  N  N  N  K  L  L  L  E  K  E  E  D  Q  E  R  L  L  V  L  *  K  K  M  K  K  K  F  L  L  N  *  R  N  S  K  Q  M  K  L  K  N  H  K  V  K  T  K  K  K  M  N  L  K  R  I  K  I  Y  N  H  K  S  N  N  L  Q  G  A  E  L  E  E  K  A  N  Q  E  R  V  A  N  L  I  F  S  D  Q  Q  Y  S  H  L  S  S  N  D  V  T  L  N  R  S  M  I  D  V  L  N  Y  L  S  Y  *  N  S  C  V  K  N  P  L  F  L  L  G  N  F  *  N  K  V  I  S  S  F  L  V  *  F  L  S  A  I  A  S  F  *  F  F  F  N  F  V  V  *  Y  V  Y  F  N  C  E  E  Y  F  S  *  G  A  I  V  I  S  F  T  L  W  I  E  L  *  Y  V  T  L  M  N  F  C  V   </second_frame>
            <third_frame>   W  F  C  M  *  R  *  K  V  L  L  S  T  K  R  A  K  H  M  S  Y  F  L  *  K  K  K  Y  Y  *  L  Y  H  L  I  K  :  W  I  V  T  K  I  D  G  K  E  E  S  C  E  E  N  K  R  V  I  S  S  N  S  R  I  I  S  N  E  W  R  F  T  T  T  T  T  N  Y  S  *  K  K  R  K  T  K  K  D  Y  *  Y  C  K  R  R  *  R  R  S  F  C  *  I  K  E  T  Q  N  K  *  S  *  R  I  T  R  *  K  Q  K  R  R  *  I  *  R  G  *  K  F  T  T  T  K  A  T  T  Y  K  E  Q  S  *  K  K  K  Q  T  K  K  E  L  L  I  *  F  F  L  I  N  S  I  P  T  Y  P  L  T  M  *  L  *  I  D  R  *  *  M  C  *  T  T  *  A  T  K  I  H  V  S  R  I  P  F  F  F  *  V  I  F  E  T  K  *  F  H  L  S  *  F  N  F  L  V  L  *  L  V  F  N  F  F  L  I  L  L  F  S  M  S  I  L  I  V  R  N  I  L  V  R  E  Q  L  L  L  A  L  H  S  G  L  N  C  D  M  S  H  *  *  I  F  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117793" stop="117794"/>
                    <exon start="119290" stop="119635"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGLSQRLMGKKKVVKKTKELSVAIAESSAMSGDSQQQQQITPRKRGRPRKIISIVKEDEEEVSAELKKLKTNEVEESQGENKKEDEFEEDKNLQPQKQQPTRSRARRKSKPRKSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="119021" e_stop="119874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="119021" e_stop="119874" e_length="854"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119021" stop="119566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119301" stop="119874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284996" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACACTAGAAATCTTAAAGATAGGATTTTTATGTTGTGGTTTGTTTTCAAAATTGGATTTTAATTATCATATGTAGCTAAAAGAAAGCTCTAGAGGCCTTAAACTTTGGGGATTTTTATTTTTGGGTAATTTTCAAGATTGAATTTTGTTATCATATATACTAAGAGAGAGCAATAGAAACCTTAAAAATTGAATTTTTGTTTCTTGGAGTTTTTCAAGATTCTATTTTTATCATATTATAAGCTTTTGAAATGACTAAATTAGTTTAGTGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCTGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATCGATCGATGATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGCTAGTTTTTAATTTTTTTTTAATTTTGTTGTTTAGTATGTCTATTTTAATT</gDNA_template>
            <first_frame> N  T  R  N  L  K  D  R  I  F  M  L  W  F  V  F  K  I  G  F  *  L  S  Y  V  A  K  R  K  L  *  R  P  *  T  L  G  I  F  I  F  G  *  F  S  R  L  N  F  V  I  I  Y  T  K  R  E  Q  *  K  P  *  K  L  N  F  C  F  L  E  F  F  K  I  L  F  L  S  Y  Y  K  L  L  K  *  L  N  *  F  S  G  L  S  Q  R  L  M  G  K  K  K  V  V  K  K  T  K  E  L  S  V  A  I  A  E  S  S  A  M  S  G  D  S  Q  Q  Q  Q  Q  I  T  P  R  K  R  G  R  P  R  K  I  I  S  I  V  K  E  D  E  E  E  V  S  A  E  L  K  K  L  K  T  N  E  V  E  E  S  Q  G  E  N  K  K  E  D  E  F  E  E  D  K  N  L  Q  P  Q  K  Q  Q  P  T  R  S  R  A  R  R  K  S  K  P  R  K  S  C  *  F  N  F  F  *  S  T  V  F  P  L  I  L  *  R  C  D  S  E  S  I  D  D  R  C  A  K  L  L  E  L  L  K  F  M  C  Q  E  S  P  F  S  F  R  *  F  L  K  Q  S  N  F  I  F  P  S  L  I  S  *  C  Y  S  *  F  L  I  F  F  *  F  C  C  L  V  C  L  F  *   </first_frame>
            <second_frame>  T  L  E  I  L  K  I  G  F  L  C  C  G  L  F  S  K  L  D  F  N  Y  H  M  *  L  K  E  S  S  R  G  L  K  L  W  G  F  L  F  L  G  N  F  Q  D  *  I  L  L  S  Y  I  L  R  E  S  N  R  N  L  K  N  *  I  F  V  S  W  S  F  S  R  F  Y  F  Y  H  I  I  S  F  *  N  D  *  I  S  L  V  D  C  H  K  D  *  W  E  R  R  K  L  *  R  K  Q  K  S  Y  Q  *  Q  *  Q  N  H  Q  Q  *  V  E  I  H  N  N  N  N  K  L  L  L  E  K  E  E  D  Q  E  R  L  L  V  L  *  K  K  M  K  K  K  F  L  L  N  *  R  N  S  K  Q  M  K  L  K  N  H  K  V  K  T  K  K  K  M  N  L  K  R  I  K  I  Y  N  H  K  S  N  N  L  Q  G  A  E  L  E  E  K  A  N  Q  E  R  V  A  N  L  I  F  S  D  Q  Q  Y  S  H  L  S  S  N  D  V  T  L  N  R  S  M  I  D  V  L  N  Y  L  S  Y  *  N  S  C  V  K  N  P  L  F  L  L  G  N  F  *  N  K  V  I  S  S  F  L  V  *  F  L  S  A  I  A  S  F  *  F  F  F  N  F  V  V  *  Y  V  Y  F  N  </second_frame>
            <third_frame>   H  *  K  S  *  R  *  D  F  Y  V  V  V  C  F  Q  N  W  I  L  I  I  I  C  S  *  K  K  A  L  E  A  L  N  F  G  D  F  Y  F  W  V  I  F  K  I  E  F  C  Y  H  I  Y  *  E  R  A  I  E  T  L  K  I  E  F  L  F  L  G  V  F  Q  D  S  I  F  I  I  L  *  A  F  E  M  T  K  L  V  *  W  I  V  T  K  I  D  G  K  E  E  S  C  E  E  N  K  R  V  I  S  S  N  S  R  I  I  S  N  E  W  R  F  T  T  T  T  T  N  Y  S  *  K  K  R  K  T  K  K  D  Y  *  Y  C  K  R  R  *  R  R  S  F  C  *  I  K  E  T  Q  N  K  *  S  *  R  I  T  R  *  K  Q  K  R  R  *  I  *  R  G  *  K  F  T  T  T  K  A  T  T  Y  K  E  Q  S  *  K  K  K  Q  T  K  K  E  L  L  I  *  F  F  L  I  N  S  I  P  T  Y  P  L  T  M  *  L  *  I  D  R  *  *  M  C  *  T  T  *  A  T  K  I  H  V  S  R  I  P  F  F  F  *  V  I  F  E  T  K  *  F  H  L  S  *  F  N  F  L  V  L  *  L  V  F  N  F  F  L  I  L  L  F  S  M  S  I  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119285" stop="119635"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSGLSQRLMGKKKVVKKTKELSVAIAESSAMSGDSQQQQQITPRKRGRPRKIISIVKEDEEEVSAELKKLKTNEVEESQGENKKEDEFEEDKNLQPQKQQPTRSRARRKSKPRKSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="118228" e_stop="118952"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="118228" e_stop="118952" e_length="725"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118228" stop="118952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118229" stop="118624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGGATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTCAAGATTGGATTTAAAGGTTATATGTGCAAAAGAGAATACTACAAACCTTAAATATTGAATTTTTATTTTGTGGGTAGTTCCAAGATTGGATTTTTAAGGCTATATATGCAAATGAGAGCATTGGAAACATTAAAGATTGAATTTTCATTTTGTGGGTAGTTTCAAGATTGGATTTTAAAGGTAATATATACAAAAGAGAACACTAAAAACCTTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGATTGGATTTTTAAGTCTATATATGCAAATGAGACCACTAGAGACATTAAAGATTGAATTTTTATTTTGTGGGTATTTTCA</gDNA_template>
            <first_frame> Q  N  R  K  Y  *  K  P  *  K  L  N  F  Y  L  V  G  S  F  K  I  G  F  *  G  Y  I  G  K  G  E  E  N  S  I  F  K  V  S  S  P  L  K  D  W  F  V  I  L  W  V  V  F  K  I  G  F  *  R  *  Y  M  Q  K  R  N  T  *  N  L  K  R  L  N  F  Y  L  W  V  F  S  R  L  D  F  *  G  N  I  Y  I  R  E  H  *  K  T  L  K  I  E  F  F  I  L  W  V  I  S  R  L  N  F  L  G  Y  I  C  K  R  E  L  *  K  P  *  R  L  D  F  S  F  Q  D  W  I  *  R  L  Y  V  Q  K  R  I  L  Q  T  L  N  I  E  F  L  F  C  G  *  F  Q  D  W  I  F  K  A  I  Y  A  N  E  S  I  G  N  I  K  D  *  I  F  I  L  W  V  V  S  R  L  D  F  K  G  N  I  Y  K  R  E  H  *  K  P  *  R  L  N  F  Y  F  V  G  I  F  K  I  G  F  L  S  L  Y  M  Q  M  R  P  L  E  T  L  K  I  E  F  L  F  C  G  Y  F   </first_frame>
            <second_frame>  K  I  E  N  T  R  N  L  R  N  *  I  F  I  *  W  V  V  L  R  L  D  F  K  V  I  *  A  K  E  R  K  I  Q  S  L  R  S  L  V  L  *  K  I  G  L  L  F  C  G  *  F  S  R  L  D  F  K  G  N  I  C  K  R  E  I  L  E  T  L  K  D  *  I  F  I  C  G  Y  F  Q  D  W  I  F  K  V  I  Y  T  *  G  N  T  K  K  P  *  R  L  N  F  L  F  C  G  *  F  Q  D  *  I  F  *  V  I  Y  A  K  E  S  Y  R  N  L  K  D  W  I  L  V  F  K  I  G  F  K  G  Y  M  C  K  R  E  Y  Y  K  P  *  I  L  N  F  Y  F  V  G  S  S  K  I  G  F  L  R  L  Y  M  Q  M  R  A  L  E  T  L  K  I  E  F  S  F  C  G  *  F  Q  D  W  I  L  K  V  I  Y  T  K  E  N  T  K  N  L  K  D  *  I  F  I  L  W  V  F  S  R  L  D  F  *  V  Y  I  C  K  *  D  H  *  R  H  *  R  L  N  F  Y  F  V  G  I  F  </second_frame>
            <third_frame>   K  *  K  I  L  E  T  L  E  I  E  F  L  F  S  G  *  F  *  D  W  I  L  R  L  Y  R  Q  R  R  G  K  F  N  L  *  G  L  *  S  F  K  R  L  V  C  Y  F  V  G  S  F  Q  D  W  I  L  K  V  I  Y  A  K  E  K  Y  L  K  P  *  K  I  E  F  L  F  V  G  I  F  K  I  G  F  L  R  *  Y  I  H  K  G  T  L  K  N  L  K  D  *  I  F  Y  F  V  G  N  F  K  I  E  F  F  R  L  Y  M  Q  K  R  A  I  E  T  L  K  I  G  F  *  F  S  R  L  D  L  K  V  I  C  A  K  E  N  T  T  N  L  K  Y  *  I  F  I  L  W  V  V  P  R  L  D  F  *  G  Y  I  C  K  *  E  H  W  K  H  *  R  L  N  F  H  F  V  G  S  F  K  I  G  F  *  R  *  Y  I  Q  K  R  T  L  K  T  L  K  I  E  F  L  F  C  G  Y  F  Q  D  W  I  F  K  S  I  Y  A  N  E  T  T  R  D  I  K  D  *  I  F  I  L  W  V  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0075G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="134560" PGL_stop="130818"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134560" e_stop="134458"/>
            <exon e_start="134370" e_stop="134255"/>
            <exon e_start="133092" e_stop="132917"/>
            <exon e_start="132477" e_stop="132287"/>
            <exon e_start="132194" e_stop="132108"/>
            <exon e_start="131767" e_stop="131610"/>
            <exon e_start="131501" e_stop="131291"/>
            <exon e_start="131187" e_stop="130818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.995" e_score="0.990"/>
          <exon-intron don_prob="0.985" acc_prob="0.818" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.876" acc_prob="0.752" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.508" e_score="0.991"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="134560" e_stop="134458" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.995">
            <gDNA_intron_boundary i_start="134457" i_stop="134371" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134370" e_stop="134255" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.818">
            <gDNA_intron_boundary i_start="134254" i_stop="133093" i_length="1162"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="133092" e_stop="132917" e_length="176"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.000">
            <gDNA_intron_boundary i_start="132916" i_stop="132478" i_length="439"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="132477" e_stop="132287" e_length="191"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="132286" i_stop="132195" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="132194" e_stop="132108" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.876" acc_prob="0.752">
            <gDNA_intron_boundary i_start="132107" i_stop="131768" i_length="340"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="131767" e_stop="131610" e_length="158"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="131609" i_stop="131502" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="131501" e_stop="131291" e_length="211"/>
          </exon>
          <intron i_serial="7" don_prob="0.828" acc_prob="0.508">
            <gDNA_intron_boundary i_start="131290" i_stop="131188" i_length="103"/>
          </intron>
          <exon e_serial="8" e_score="0.973">
            <gDNA_exon_boundary e_start="131187" e_stop="130818" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134560" stop="134458"/>
              <exon start="134370" stop="134255"/>
              <exon start="133092" stop="132917"/>
              <exon start="132477" stop="132287"/>
              <exon start="132194" stop="132110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134513" stop="134458"/>
              <exon start="134370" stop="134255"/>
              <exon start="133092" stop="132917"/>
              <exon start="132477" stop="132287"/>
              <exon start="132194" stop="132108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134470" stop="134458"/>
              <exon start="134370" stop="134255"/>
              <exon start="133092" stop="132917"/>
              <exon start="132477" stop="132287"/>
              <exon start="132194" stop="132108"/>
              <exon start="131767" stop="131617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133001" stop="132917"/>
              <exon start="132477" stop="132287"/>
              <exon start="132194" stop="132108"/>
              <exon start="131767" stop="131610"/>
              <exon start="131501" stop="131453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132474" stop="132287"/>
              <exon start="132194" stop="132108"/>
              <exon start="131767" stop="131610"/>
              <exon start="131501" stop="131291"/>
              <exon start="131187" stop="131178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132472" stop="132287"/>
              <exon start="132194" stop="132108"/>
              <exon start="131767" stop="131610"/>
              <exon start="131501" stop="131354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131738" stop="131610"/>
              <exon start="131501" stop="131291"/>
              <exon start="131187" stop="131102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131738" stop="131610"/>
              <exon start="131501" stop="131291"/>
              <exon start="131187" stop="131115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131692" stop="131610"/>
              <exon start="131501" stop="131291"/>
              <exon start="131187" stop="130818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352085" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAGTTAACGATAAGTTCGTTAATGGGAAGTCGAATGGTGGAACTGTGAATGGAGAGAAGGCAATGGTAACTCCAGTTATTAGAGCGAGTTTGGAGAAACAG : GGATATAAAATAATTGGCACGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTATGGCATTGAGAGTCACAG : GTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAG : GTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAG : TTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTT : GATTCTTTGAGAGCTCTTAAGGAGAAGGAGCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAAC : GTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAGGTTGCCTGTGAGCATGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCGCTAAGTTCAAAATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTG : GTAGCTTCTGGGAAACCCTTTACAAGTAAAGATTACATGACACCTACACCATCTTGGGCTGTCTATGGAGCTGAGGAAGGTGGTTTTGACCCAGAGCAATTGCGTTTCAAAAAAGAGCGGCACCACAGATCATCTCGTCAGGAAAATGGTTCTTGAAATGTTCGAAGCAGGTTTTCGTTACCTCTGGGATGGCCTAAAATTTTGTTCCTTCGACTTAGATTTTGCTTTCCTCCATTTTCCTATACAAGTTGCATTTCACTATATAACTGCCGAAGTTGTCACTGATATGAAAAATATTGCTTGTATGAACACTTTGTATGTTGTTTCATACACAAATTTTAATTAATTTTGATTATATAAAACGATTGGA</gDNA_template>
            <first_frame> R  S  *  R  *  V  R  *  W  E  V  E  W  W  N  C  E  W  R  E  G  N  G  N  S  S  Y  *  S  E  F  G  E  T   : G  I  *  N  N  W  H  A  *  R  C  E  T  L  *  M  D  K  I  T  T  *  R  A  R  R  L  L  *  A  L  I  L  W  H  *  E  S  Q  :  V  H  G  G  H  S  *  F  S  M  C  K  Q  M  C  F  L  L  E  T  S  H  K  S  C  W  E  E  L  D  M  E  D  G  *  S  Y  *  D  C  E  H  S  Y  R  F  A  Y  Q  N  D  K  T  D  E  R  R  S  R :   C  *  S  *  A  F  V  *  G  S  F  S  *  A  L  C  F  V  T  G  W  *  A  Y  Y  V  S  R  N  K  F  T  C  R  *  A  A  Q  E  A  D  F  D  F  S  C  Y  *  C  T  V  P  *  Q  D  *  V  I  E  T  N  H  T   : V  V  C  Q  R  R  C  R  Y  K  G  Q  L  K  S  N  *  Q  T  T  I  W  R  L  L  G  A  I  S   : *  F  F  E  S  S  *  G  E  G  A  K  N  C  L  S  F  D  T  R  *  R  V  E  H  R  R  C  G  C  I  F  *  P  I  Q  H  W  E  T  R  F  H  *  N  Q  R  C  H  L  L  W  N  :  V  G  Y  I  K  V  D  N  G  E  C  P  L  A  F  *  C  E  G  I  L  *  S  L  G  *  K  E  Q  R  R  V  *  G  C  L  *  A  C  A  F  L  L  C  S  S  G  *  S  R  *  V  Q  N  R  R  S  M  V  H  V  D  R  L  R  E  V  P  *  S   : G  S  F  W  E  T  L  Y  K  *  R  L  H  D  T  Y  T  I  L  G  C  L  W  S  *  G  R  W  F  *  P  R  A  I  A  F  Q  K  R  A  A  P  Q  I  I  S  S  G  K  W  F  L  K  C  S  K  Q  V  F  V  T  S  G  M  A  *  N  F  V  P  S  T  *  I  L  L  S  S  I  F  L  Y  K  L  H  F  T  I  *  L  P  K  L  S  L  I  *  K  I  L  L  V  *  T  L  C  M  L  F  H  T  Q  I  L  I  N  F  D  Y  I  K  R  L   </first_frame>
            <second_frame>  G  V  N  D  K  F  V  N  G  K  S  N  G  G  T  V  N  G  E  K  A  M  V  T  P  V  I  R  A  S  L  E  K  Q  :  G  Y  K  I  I  G  T  H  S  G  V  K  L  C  R  W  T  K  S  Q  L  R  G  R  G  G  C  Y  K  H  S  F  Y  G  I  E  S  H  R :   C  M  E  A  T  P  S  L  A  C  A  N  K  C  V  F  C  W  R  H  H  T  N  P  V  G  K  S  W  T  W  K  M  D  D  P  I  E  I  V  N  T  A  I  D  L  H  T  K  M  I  K  Q  M  K  G  V  P   : G  V  K  A  E  R  L  S  E  G  L  S  P  R  H  C  A  L  S  L  V  G  E  P  I  M  Y  P  E  I  N  S  L  V  D  E  L  H  R  R  R  I  S  T  F  L  V  T  N  A  Q  F  P  D  K  I  K  L  L  K  P  I  T  Q  :  L  Y  V  S  V  D  A  G  T  K  D  S  L  K  A  I  D  R  P  L  F  G  D  F  W  E  R  F  L  :  D  S  L  R  A  L  K  E  K  E  Q  R  T  V  Y  R  L  T  L  V  K  G  W  N  T  E  D  V  D  A  Y  S  S  L  F  S  I  G  K  P  D  F  I  E  I  K  G  V  T  Y  C  G  T :   S  A  T  S  K  L  T  M  E  N  V  P  W  H  S  D  V  K  E  F  S  E  A  L  A  K  K  S  N  G  E  Y  E  V  A  C  E  H  V  H  S  C  C  V  L  L  A  K  V  A  K  F  K  I  D  G  Q  W  F  T  W  I  D  Y  E  K  F  H  D  L  :  V  A  S  G  K  P  F  T  S  K  D  Y  M  T  P  T  P  S  W  A  V  Y  G  A  E  E  G  G  F  D  P  E  Q  L  R  F  K  K  E  R  H  H  R  S  S  R  Q  E  N  G  S  *  N  V  R  S  R  F  S  L  P  L  G  W  P  K  I  L  F  L  R  L  R  F  C  F  P  P  F  S  Y  T  S  C  I  S  L  Y  N  C  R  S  C  H  *  Y  E  K  Y  C  L  Y  E  H  F  V  C  C  F  I  H  K  F  *  L  I  L  I  I  *  N  D  W  </second_frame>
            <third_frame>   E  L  T  I  S  S  L  M  G  S  R  M  V  E  L  *  M  E  R  R  Q  W  *  L  Q  L  L  E  R  V  W  R  N  R :   D  I  K  *  L  A  R  I  A  V  *  N  F  V  D  G  Q  N  H  N  L  E  G  A  E  V  A  I  S  T  H  F  M  A  L  R  V  T   : G  A  W  R  P  L  L  V  *  H  V  Q  T  N  V  F  F  V  G  D  I  T  Q  I  L  L  G  R  A  G  H  G  R  W  M  I  L  L  R  L  *  T  Q  L  *  I  C  I  P  K  *  *  N  R  *  K  A  F  Q  :  V  L  K  L  S  V  C  L  R  V  F  L  L  G  I  V  L  C  H  W  L  V  S  L  L  C  I  Q  K  *  I  H  L  *  M  S  C  T  G  G  G  F  R  L  F  L  L  L  M  H  S  S  L  T  R  L  S  Y  *  N  Q  S  H  S :   C  M  S  A  *  M  Q  V  Q  R  T  A  *  K  Q  L  T  D  H  Y  L  E  T  S  G  S  D  F  L :   I  L  *  E  L  L  R  R  R  S  K  E  L  S  I  V  *  H  S  L  K  G  G  T  Q  K  M  W  M  H  I  L  A  Y  S  A  L  G  N  P  I  S  L  K  S  K  V  S  L  I  V  E   : R  R  L  H  Q  S  *  Q  W  R  M  S  L  G  I  L  M  *  R  N  S  L  K  P  W  L  K  R  A  T  E  S  M  R  L  P  V  S  M  C  I  P  A  V  F  F  W  L  K  S  L  S  S  K  *  T  V  N  G  S  R  G  *  T  T  R  S  S  M  I  W :   *  L  L  G  N  P  L  Q  V  K  I  T  *  H  L  H  H  L  G  L  S  M  E  L  R  K  V  V  L  T  Q  S  N  C  V  S  K  K  S  G  T  T  D  H  L  V  R  K  M  V  L  E  M  F  E  A  G  F  R  Y  L  W  D  G  L  K  F  C  S  F  D  L  D  F  A  F  L  H  F  P  I  Q  V  A  F  H  Y  I  T  A  E  V  V  T  D  M  K  N  I  A  C  M  N  T  L  Y  V  V  S  Y  T  N  F  N  *  F  *  L  Y  K  T  I  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134559" stop="134458"/>
                    <exon start="134370" stop="134255"/>
                    <exon start="133092" stop="132917"/>
                    <exon start="132477" stop="132287"/>
                    <exon start="132194" stop="132108"/>
                    <exon start="131767" stop="131610"/>
                    <exon start="131501" stop="131291"/>
                    <exon start="131187" stop="131032"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVNDKFVNGKSNGGTVNGEKAMVTPVIRASLEKQGYKIIGTHSGVKLCRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWTWKMDDPIEIVNTAIDLHTKMIKQMKGVPGVKAERLSEGLSPRHCALSLVGEPIMYPEINSLVDELHRRRISTFLVTNAQFPDKIKLLKPITQLYVSVDAGTKDSLKAIDRPLFGDFWERFLDSLRALKEKEQRTVYRLTLVKGWNTEDVDAYSSLFSIGKPDFIEIKGVTYCGTSATSKLTMENVPWHSDVKEFSEALAKKSNGEYEVACEHVHSCCVLLAKVAKFKIDGQWFTWIDYEKFHDLVASGKPFTSKDYMTPTPSWAVYGAEEGGFDPEQLRFKKERHHRSSRQENGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="134380" e_stop="134255"/>
            <exon e_start="133092" e_stop="132917"/>
            <exon e_start="132477" e_stop="132287"/>
            <exon e_start="132194" e_stop="132108"/>
            <exon e_start="131767" e_stop="131610"/>
            <exon e_start="131501" e_stop="131291"/>
            <exon e_start="131187" e_stop="130818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.818" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.876" acc_prob="0.752" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.508" e_score="0.991"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="134380" e_stop="134255" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.818">
            <gDNA_intron_boundary i_start="134254" i_stop="133093" i_length="1162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="133092" e_stop="132917" e_length="176"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.000">
            <gDNA_intron_boundary i_start="132916" i_stop="132478" i_length="439"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="132477" e_stop="132287" e_length="191"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="132286" i_stop="132195" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="132194" e_stop="132108" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.876" acc_prob="0.752">
            <gDNA_intron_boundary i_start="132107" i_stop="131768" i_length="340"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="131767" e_stop="131610" e_length="158"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="131609" i_stop="131502" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="131501" e_stop="131291" e_length="211"/>
          </exon>
          <intron i_serial="6" don_prob="0.828" acc_prob="0.508">
            <gDNA_intron_boundary i_start="131290" i_stop="131188" i_length="103"/>
          </intron>
          <exon e_serial="7" e_score="0.973">
            <gDNA_exon_boundary e_start="131187" e_stop="130818" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134380" stop="134255"/>
              <exon start="133092" stop="132917"/>
              <exon start="132477" stop="132287"/>
              <exon start="132194" stop="132108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133001" stop="132917"/>
              <exon start="132477" stop="132287"/>
              <exon start="132194" stop="132108"/>
              <exon start="131767" stop="131610"/>
              <exon start="131501" stop="131453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132474" stop="132287"/>
              <exon start="132194" stop="132108"/>
              <exon start="131767" stop="131610"/>
              <exon start="131501" stop="131291"/>
              <exon start="131187" stop="131178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132472" stop="132287"/>
              <exon start="132194" stop="132108"/>
              <exon start="131767" stop="131610"/>
              <exon start="131501" stop="131354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131738" stop="131610"/>
              <exon start="131501" stop="131291"/>
              <exon start="131187" stop="131102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131738" stop="131610"/>
              <exon start="131501" stop="131291"/>
              <exon start="131187" stop="131115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131692" stop="131610"/>
              <exon start="131501" stop="131291"/>
              <exon start="131187" stop="130818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352085" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATTGCAGGGATATAAAATAATTGGCACGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTATGGCATTGAGAGTCACAG : GTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAG : GTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAG : TTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTT : GATTCTTTGAGAGCTCTTAAGGAGAAGGAGCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAAC : GTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAGGTTGCCTGTGAGCATGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCGCTAAGTTCAAAATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTG : GTAGCTTCTGGGAAACCCTTTACAAGTAAAGATTACATGACACCTACACCATCTTGGGCTGTCTATGGAGCTGAGGAAGGTGGTTTTGACCCAGAGCAATTGCGTTTCAAAAAAGAGCGGCACCACAGATCATCTCGTCAGGAAAATGGTTCTTGAAATGTTCGAAGCAGGTTTTCGTTACCTCTGGGATGGCCTAAAATTTTGTTCCTTCGACTTAGATTTTGCTTTCCTCCATTTTCCTATACAAGTTGCATTTCACTATATAACTGCCGAAGTTGTCACTGATATGAAAAATATTGCTTGTATGAACACTTTGTATGTTGTTTCATACACAAATTTTAATTAATTTTGATTATATAAAACGATTGGA</gDNA_template>
            <first_frame> *  I  A  G  I  *  N  N  W  H  A  *  R  C  E  T  L  *  M  D  K  I  T  T  *  R  A  R  R  L  L  *  A  L  I  L  W  H  *  E  S  Q  :  V  H  G  G  H  S  *  F  S  M  C  K  Q  M  C  F  L  L  E  T  S  H  K  S  C  W  E  E  L  D  M  E  D  G  *  S  Y  *  D  C  E  H  S  Y  R  F  A  Y  Q  N  D  K  T  D  E  R  R  S  R :   C  *  S  *  A  F  V  *  G  S  F  S  *  A  L  C  F  V  T  G  W  *  A  Y  Y  V  S  R  N  K  F  T  C  R  *  A  A  Q  E  A  D  F  D  F  S  C  Y  *  C  T  V  P  *  Q  D  *  V  I  E  T  N  H  T   : V  V  C  Q  R  R  C  R  Y  K  G  Q  L  K  S  N  *  Q  T  T  I  W  R  L  L  G  A  I  S   : *  F  F  E  S  S  *  G  E  G  A  K  N  C  L  S  F  D  T  R  *  R  V  E  H  R  R  C  G  C  I  F  *  P  I  Q  H  W  E  T  R  F  H  *  N  Q  R  C  H  L  L  W  N  :  V  G  Y  I  K  V  D  N  G  E  C  P  L  A  F  *  C  E  G  I  L  *  S  L  G  *  K  E  Q  R  R  V  *  G  C  L  *  A  C  A  F  L  L  C  S  S  G  *  S  R  *  V  Q  N  R  R  S  M  V  H  V  D  R  L  R  E  V  P  *  S   : G  S  F  W  E  T  L  Y  K  *  R  L  H  D  T  Y  T  I  L  G  C  L  W  S  *  G  R  W  F  *  P  R  A  I  A  F  Q  K  R  A  A  P  Q  I  I  S  S  G  K  W  F  L  K  C  S  K  Q  V  F  V  T  S  G  M  A  *  N  F  V  P  S  T  *  I  L  L  S  S  I  F  L  Y  K  L  H  F  T  I  *  L  P  K  L  S  L  I  *  K  I  L  L  V  *  T  L  C  M  L  F  H  T  Q  I  L  I  N  F  D  Y  I  K  R  L   </first_frame>
            <second_frame>  K  L  Q  G  Y  K  I  I  G  T  H  S  G  V  K  L  C  R  W  T  K  S  Q  L  R  G  R  G  G  C  Y  K  H  S  F  Y  G  I  E  S  H  R :   C  M  E  A  T  P  S  L  A  C  A  N  K  C  V  F  C  W  R  H  H  T  N  P  V  G  K  S  W  T  W  K  M  D  D  P  I  E  I  V  N  T  A  I  D  L  H  T  K  M  I  K  Q  M  K  G  V  P   : G  V  K  A  E  R  L  S  E  G  L  S  P  R  H  C  A  L  S  L  V  G  E  P  I  M  Y  P  E  I  N  S  L  V  D  E  L  H  R  R  R  I  S  T  F  L  V  T  N  A  Q  F  P  D  K  I  K  L  L  K  P  I  T  Q  :  L  Y  V  S  V  D  A  G  T  K  D  S  L  K  A  I  D  R  P  L  F  G  D  F  W  E  R  F  L  :  D  S  L  R  A  L  K  E  K  E  Q  R  T  V  Y  R  L  T  L  V  K  G  W  N  T  E  D  V  D  A  Y  S  S  L  F  S  I  G  K  P  D  F  I  E  I  K  G  V  T  Y  C  G  T :   S  A  T  S  K  L  T  M  E  N  V  P  W  H  S  D  V  K  E  F  S  E  A  L  A  K  K  S  N  G  E  Y  E  V  A  C  E  H  V  H  S  C  C  V  L  L  A  K  V  A  K  F  K  I  D  G  Q  W  F  T  W  I  D  Y  E  K  F  H  D  L  :  V  A  S  G  K  P  F  T  S  K  D  Y  M  T  P  T  P  S  W  A  V  Y  G  A  E  E  G  G  F  D  P  E  Q  L  R  F  K  K  E  R  H  H  R  S  S  R  Q  E  N  G  S  *  N  V  R  S  R  F  S  L  P  L  G  W  P  K  I  L  F  L  R  L  R  F  C  F  P  P  F  S  Y  T  S  C  I  S  L  Y  N  C  R  S  C  H  *  Y  E  K  Y  C  L  Y  E  H  F  V  C  C  F  I  H  K  F  *  L  I  L  I  I  *  N  D  W  </second_frame>
            <third_frame>   N  C  R  D  I  K  *  L  A  R  I  A  V  *  N  F  V  D  G  Q  N  H  N  L  E  G  A  E  V  A  I  S  T  H  F  M  A  L  R  V  T   : G  A  W  R  P  L  L  V  *  H  V  Q  T  N  V  F  F  V  G  D  I  T  Q  I  L  L  G  R  A  G  H  G  R  W  M  I  L  L  R  L  *  T  Q  L  *  I  C  I  P  K  *  *  N  R  *  K  A  F  Q  :  V  L  K  L  S  V  C  L  R  V  F  L  L  G  I  V  L  C  H  W  L  V  S  L  L  C  I  Q  K  *  I  H  L  *  M  S  C  T  G  G  G  F  R  L  F  L  L  L  M  H  S  S  L  T  R  L  S  Y  *  N  Q  S  H  S :   C  M  S  A  *  M  Q  V  Q  R  T  A  *  K  Q  L  T  D  H  Y  L  E  T  S  G  S  D  F  L :   I  L  *  E  L  L  R  R  R  S  K  E  L  S  I  V  *  H  S  L  K  G  G  T  Q  K  M  W  M  H  I  L  A  Y  S  A  L  G  N  P  I  S  L  K  S  K  V  S  L  I  V  E   : R  R  L  H  Q  S  *  Q  W  R  M  S  L  G  I  L  M  *  R  N  S  L  K  P  W  L  K  R  A  T  E  S  M  R  L  P  V  S  M  C  I  P  A  V  F  F  W  L  K  S  L  S  S  K  *  T  V  N  G  S  R  G  *  T  T  R  S  S  M  I  W :   *  L  L  G  N  P  L  Q  V  K  I  T  *  H  L  H  H  L  G  L  S  M  E  L  R  K  V  V  L  T  Q  S  N  C  V  S  K  K  S  G  T  T  D  H  L  V  R  K  M  V  L  E  M  F  E  A  G  F  R  Y  L  W  D  G  L  K  F  C  S  F  D  L  D  F  A  F  L  H  F  P  I  Q  V  A  F  H  Y  I  T  A  E  V  V  T  D  M  K  N  I  A  C  M  N  T  L  Y  V  V  S  Y  T  N  F  N  *  F  *  L  Y  K  T  I  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134379" stop="134255"/>
                    <exon start="133092" stop="132917"/>
                    <exon start="132477" stop="132287"/>
                    <exon start="132194" stop="132108"/>
                    <exon start="131767" stop="131610"/>
                    <exon start="131501" stop="131291"/>
                    <exon start="131187" stop="131032"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLQGYKIIGTHSGVKLCRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWTWKMDDPIEIVNTAIDLHTKMIKQMKGVPGVKAERLSEGLSPRHCALSLVGEPIMYPEINSLVDELHRRRISTFLVTNAQFPDKIKLLKPITQLYVSVDAGTKDSLKAIDRPLFGDFWERFLDSLRALKEKEQRTVYRLTLVKGWNTEDVDAYSSLFSIGKPDFIEIKGVTYCGTSATSKLTMENVPWHSDVKEFSEALAKKSNGEYEVACEHVHSCCVLLAKVAKFKIDGQWFTWIDYEKFHDLVASGKPFTSKDYMTPTPSWAVYGAEEGGFDPEQLRFKKERHHRSSRQENGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="136783" PGL_stop="140379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136822" e_stop="136901"/>
            <exon e_start="137360" e_stop="137632"/>
            <exon e_start="138034" e_stop="138139"/>
            <exon e_start="139357" e_stop="139500"/>
            <exon e_start="140173" e_stop="140379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="136822" e_stop="136901" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="136902" i_stop="137359" i_length="458"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="137360" e_stop="137632" e_length="273"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.883">
            <gDNA_intron_boundary i_start="137633" i_stop="138033" i_length="401"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="138034" e_stop="138139" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="138140" i_stop="139356" i_length="1217"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="139357" e_stop="139500" e_length="144"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.000">
            <gDNA_intron_boundary i_start="139501" i_stop="140172" i_length="672"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="140173" e_stop="140379" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136822" stop="136901"/>
              <exon start="137360" stop="137632"/>
              <exon start="138034" stop="138139"/>
              <exon start="139357" stop="139500"/>
              <exon start="140173" stop="140245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136824" stop="136901"/>
              <exon start="137360" stop="137632"/>
              <exon start="138034" stop="138139"/>
              <exon start="139357" stop="139500"/>
              <exon start="140173" stop="140379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315923" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGTTCCTTCAAAAACCCTACCTGTAAAACCCATCTAACCCAGAAGGTAATTGCAAGCTCTCAACAAGGAGAACTCG : GTTTTTCTCTAATTCAATGGAGCTAGAGGATAGCATTTTAAACTTCTCTGATGAAGACGAGAGCTTTGAGGATGATGAAGATGTTAAAATGAATGATATTGAGGAAGGAGAACTAGTTGAGAAGATCTCCAAGACTGGATTAGAGGAAACTGGTGATGTATGTGCCAGCTCTGAAAATCCTCTTCCAGGTAAAAAAAATCGGAGACGGAGGAAGAACAAGGGAAAGAACAAAAGCAAGAGAGTTTCTTCAGGTCCAATCACAGACATTAACAG : ATTTGTTTTGGATGTCGGAAGACGCTTGAAAGAGAGGAAATCTTATCTTATATGGAATGCTGTTGGTTGTCTCGGCCTATCTGCTTTGAGTGATCTTGTTAAAGAG : GTGGATGCAATTCAGACTTGTGGCGGCCAGAAGACTGCTGATGGCAGGCGTTTCCGAACAGGTGGTGGAATATTGTGGAGCATCCTTAAAGTACGAGATCCAAATGCATACAAAGAGATAATGAAGAAAGGGAAGGAGTTTGAG : AAGCAGTTTAGGCAGGCTAATCTCAAGCAAGAACCCCTCCAAAACAAAGAAGCTTCTTTGGAGAGATCTAGTCAGACAATAGGAGACGAGATTACAGCCAGTTGTTCAGATGTTTTGCTGCAGCAAGAACCTGTTGAACAGTCTAATAGTGGAGCCAAACGTGCATCTGTTCATGATAGAATAAGGATGCCTGTCACGTATGATGAT</gDNA_template>
            <first_frame> K  K  F  L  Q  K  P  Y  L  *  N  P  S  N  P  E  G  N  C  K  L  S  T  R  R  T  R :   F  F  S  N  S  M  E  L  E  D  S  I  L  N  F  S  D  E  D  E  S  F  E  D  D  E  D  V  K  M  N  D  I  E  E  G  E  L  V  E  K  I  S  K  T  G  L  E  E  T  G  D  V  C  A  S  S  E  N  P  L  P  G  K  K  N  R  R  R  R  K  N  K  G  K  N  K  S  K  R  V  S  S  G  P  I  T  D  I  N  R :   F  V  L  D  V  G  R  R  L  K  E  R  K  S  Y  L  I  W  N  A  V  G  C  L  G  L  S  A  L  S  D  L  V  K  E  :  V  D  A  I  Q  T  C  G  G  Q  K  T  A  D  G  R  R  F  R  T  G  G  G  I  L  W  S  I  L  K  V  R  D  P  N  A  Y  K  E  I  M  K  K  G  K  E  F  E  :  K  Q  F  R  Q  A  N  L  K  Q  E  P  L  Q  N  K  E  A  S  L  E  R  S  S  Q  T  I  G  D  E  I  T  A  S  C  S  D  V  L  L  Q  Q  E  P  V  E  Q  S  N  S  G  A  K  R  A  S  V  H  D  R  I  R  M  P  V  T  Y  D  D </first_frame>
            <second_frame>  K  S  S  F  K  N  P  T  C  K  T  H  L  T  Q  K  V  I  A  S  S  Q  Q  G  E  L   : G  F  S  L  I  Q  W  S  *  R  I  A  F  *  T  S  L  M  K  T  R  A  L  R  M  M  K  M  L  K  *  M  I  L  R  K  E  N  *  L  R  R  S  P  R  L  D  *  R  K  L  V  M  Y  V  P  A  L  K  I  L  F  Q  V  K  K  I  G  D  G  G  R  T  R  E  R  T  K  A  R  E  F  L  Q  V  Q  S  Q  T  L  T   : D  L  F  W  M  S  E  D  A  *  K  R  G  N  L  I  L  Y  G  M  L  L  V  V  S  A  Y  L  L  *  V  I  L  L  K  R :   W  M  Q  F  R  L  V  A  A  R  R  L  L  M  A  G  V  S  E  Q  V  V  E  Y  C  G  A  S  L  K  Y  E  I  Q  M  H  T  K  R  *  *  R  K  G  R  S  L  R :   S  S  L  G  R  L  I  S  S  K  N  P  S  K  T  K  K  L  L  W  R  D  L  V  R  Q  *  E  T  R  L  Q  P  V  V  Q  M  F  C  C  S  K  N  L  L  N  S  L  I  V  E  P  N  V  H  L  F  M  I  E  *  G  C  L  S  R  M  M   </second_frame>
            <third_frame>   K  V  P  S  K  T  L  P  V  K  P  I  *  P  R  R  *  L  Q  A  L  N  K  E  N  S  :  V  F  L  *  F  N  G  A  R  G  *  H  F  K  L  L  *  *  R  R  E  L  *  G  *  *  R  C  *  N  E  *  Y  *  G  R  R  T  S  *  E  D  L  Q  D  W  I  R  G  N  W  *  C  M  C  Q  L  *  K  S  S  S  R  *  K  K  S  E  T  E  E  E  Q  G  K  E  Q  K  Q  E  S  F  F  R  S  N  H  R  H  *  Q  :  I  C  F  G  C  R  K  T  L  E  R  E  E  I  L  S  Y  M  E  C  C  W  L  S  R  P  I  C  F  E  *  S  C  *  R   : G  G  C  N  S  D  L  W  R  P  E  D  C  *  W  Q  A  F  P  N  R  W  W  N  I  V  E  H  P  *  S  T  R  S  K  C  I  Q  R  D  N  E  E  R  E  G  V  *   : E  A  V  *  A  G  *  S  Q  A  R  T  P  P  K  Q  R  S  F  F  G  E  I  *  S  D  N  R  R  R  D  Y  S  Q  L  F  R  C  F  A  A  A  R  T  C  *  T  V  *  *  W  S  Q  T  C  I  C  S  *  *  N  K  D  A  C  H  V  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136852" stop="136901"/>
                    <exon start="137360" stop="137632"/>
                    <exon start="138034" stop="138139"/>
                    <exon start="139357" stop="139500"/>
                    <exon start="140173" stop="140379"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPSNPEGNCKLSTRRTRFFSNSMELEDSILNFSDEDESFEDDEDVKMNDIEEGELVEKISKTGLEETGDVCASSENPLPGKKNRRRRKNKGKNKSKRVSSGPITDINRFVLDVGRRLKERKSYLIWNAVGCLGLSALSDLVKEVDAIQTCGGQKTADGRRFRTGGGILWSILKVRDPNAYKEIMKKGKEFEKQFRQANLKQEPLQNKEASLERSSQTIGDEITASCSDVLLQQEPVEQSNSGAKRASVHDRIRMPVTYDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="136783" e_stop="136901"/>
            <exon e_start="137360" e_stop="137632"/>
            <exon e_start="138034" e_stop="138139"/>
            <exon e_start="138850" e_stop="138988"/>
            <exon e_start="139357" e_stop="139500"/>
            <exon e_start="140173" e_stop="140213"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="0.950"/>
          <exon-intron don_prob="0.997" acc_prob="0.883" e_score="0.978"/>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.624" acc_prob="0.961" e_score="0.986"/>
          <exon-intron don_prob="0.986" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="136783" e_stop="136901" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="136902" i_stop="137359" i_length="458"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="137360" e_stop="137632" e_length="273"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.883">
            <gDNA_intron_boundary i_start="137633" i_stop="138033" i_length="401"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="138034" e_stop="138139" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="138140" i_stop="138849" i_length="710"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="138850" e_stop="138988" e_length="139"/>
          </exon>
          <intron i_serial="4" don_prob="0.624" acc_prob="0.961">
            <gDNA_intron_boundary i_start="138989" i_stop="139356" i_length="368"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="139357" e_stop="139500" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.000">
            <gDNA_intron_boundary i_start="139501" i_stop="140172" i_length="672"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="140173" e_stop="140213" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136783" stop="136901"/>
              <exon start="137360" stop="137632"/>
              <exon start="138034" stop="138139"/>
              <exon start="138850" stop="138988"/>
              <exon start="139357" stop="139500"/>
              <exon start="140173" stop="140213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGCTTTGGCACTAAACCCATCAGCATTCTTCCCCGAAAAAAGTTCCTTCAAAAACCCTACCTGTAAAACCCATCTAACCCAGAAGGTAATTGCAAGCTCTCAACAAGGAGAACTCG : GTTTTTCTCTAATTCAATGGAGCTAGAGGATAGCATTTTAAACTTCTCTGATGAAGACGAGAGCTTTGAGGATGATGAAGATGTTAAAATGAATGATATTGAGGAAGGAGAACTAGTTGAGAAGATCTCCAAGACTGGATTAGAGGAAACTGGTGATGTATGTGCCAGCTCTGAAAATCCTCTTCCAGGTAAAAAAAATCGGAGACGGAGGAAGAACAAGGGAAAGAACAAAAGCAAGAGAGTTTCTTCAGGTCCAATCACAGACATTAACAG : ATTTGTTTTGGATGTCGGAAGACGCTTGAAAGAGAGGAAATCTTATCTTATATGGAATGCTGTTGGTTGTCTCGGCCTATCTGCTTTGAGTGATCTTGTTAAAGAG : ATGCCTCCTGGTGAAGCCTTTTTCACTCCTTTCAGTCTCATGGACCTTTCTTCCAAGATAGCTTCTGCCGGAACTACTTTGTGGTGTCTATTTGGATTGATTCCAATGTTTTTGCCTGTCTTTGTTGTTTTACCCCATG : GTGGATGCAATTCAGACTTGTGGCGGCCAGAAGACTGCTGATGGCAGGCGTTTCCGAACAGGTGGTGGAATATTGTGGAGCATCCTTAAAGTACGAGATCCAAATGCATACAAAGAGATAATGAAGAAAGGGAAGGAGTTTGAG : AAGCAGTTTAGGCAGGCTAATCTCAAGCAAGAACCCCTCCA</gDNA_template>
            <first_frame> *  S  F  G  T  K  P  I  S  I  L  P  R  K  K  F  L  Q  K  P  Y  L  *  N  P  S  N  P  E  G  N  C  K  L  S  T  R  R  T  R :   F  F  S  N  S  M  E  L  E  D  S  I  L  N  F  S  D  E  D  E  S  F  E  D  D  E  D  V  K  M  N  D  I  E  E  G  E  L  V  E  K  I  S  K  T  G  L  E  E  T  G  D  V  C  A  S  S  E  N  P  L  P  G  K  K  N  R  R  R  R  K  N  K  G  K  N  K  S  K  R  V  S  S  G  P  I  T  D  I  N  R :   F  V  L  D  V  G  R  R  L  K  E  R  K  S  Y  L  I  W  N  A  V  G  C  L  G  L  S  A  L  S  D  L  V  K  E  :  M  P  P  G  E  A  F  F  T  P  F  S  L  M  D  L  S  S  K  I  A  S  A  G  T  T  L  W  C  L  F  G  L  I  P  M  F  L  P  V  F  V  V  L  P  H   : G  G  C  N  S  D  L  W  R  P  E  D  C  *  W  Q  A  F  P  N  R  W  W  N  I  V  E  H  P  *  S  T  R  S  K  C  I  Q  R  D  N  E  E  R  E  G  V  *   : E  A  V  *  A  G  *  S  Q  A  R  T  P  P </first_frame>
            <second_frame>  E  A  L  A  L  N  P  S  A  F  F  P  E  K  S  S  F  K  N  P  T  C  K  T  H  L  T  Q  K  V  I  A  S  S  Q  Q  G  E  L   : G  F  S  L  I  Q  W  S  *  R  I  A  F  *  T  S  L  M  K  T  R  A  L  R  M  M  K  M  L  K  *  M  I  L  R  K  E  N  *  L  R  R  S  P  R  L  D  *  R  K  L  V  M  Y  V  P  A  L  K  I  L  F  Q  V  K  K  I  G  D  G  G  R  T  R  E  R  T  K  A  R  E  F  L  Q  V  Q  S  Q  T  L  T   : D  L  F  W  M  S  E  D  A  *  K  R  G  N  L  I  L  Y  G  M  L  L  V  V  S  A  Y  L  L  *  V  I  L  L  K  R :   C  L  L  V  K  P  F  S  L  L  S  V  S  W  T  F  L  P  R  *  L  L  P  E  L  L  C  G  V  Y  L  D  *  F  Q  C  F  C  L  S  L  L  F  Y  P  M  :  V  D  A  I  Q  T  C  G  G  Q  K  T  A  D  G  R  R  F  R  T  G  G  G  I  L  W  S  I  L  K  V  R  D  P  N  A  Y  K  E  I  M  K  K  G  K  E  F  E  :  K  Q  F  R  Q  A  N  L  K  Q  E  P  L   </second_frame>
            <third_frame>   K  L  W  H  *  T  H  Q  H  S  S  P  K  K  V  P  S  K  T  L  P  V  K  P  I  *  P  R  R  *  L  Q  A  L  N  K  E  N  S  :  V  F  L  *  F  N  G  A  R  G  *  H  F  K  L  L  *  *  R  R  E  L  *  G  *  *  R  C  *  N  E  *  Y  *  G  R  R  T  S  *  E  D  L  Q  D  W  I  R  G  N  W  *  C  M  C  Q  L  *  K  S  S  S  R  *  K  K  S  E  T  E  E  E  Q  G  K  E  Q  K  Q  E  S  F  F  R  S  N  H  R  H  *  Q  :  I  C  F  G  C  R  K  T  L  E  R  E  E  I  L  S  Y  M  E  C  C  W  L  S  R  P  I  C  F  E  *  S  C  *  R   : D  A  S  W  *  S  L  F  H  S  F  Q  S  H  G  P  F  F  Q  D  S  F  C  R  N  Y  F  V  V  S  I  W  I  D  S  N  V  F  A  C  L  C  C  F  T  P  W :   W  M  Q  F  R  L  V  A  A  R  R  L  L  M  A  G  V  S  E  Q  V  V  E  Y  C  G  A  S  L  K  Y  E  I  Q  M  H  T  K  R  *  *  R  K  G  R  S  L  R :   S  S  L  G  R  L  I  S  S  K  N  P  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136852" stop="136901"/>
                    <exon start="137360" stop="137632"/>
                    <exon start="138034" stop="138139"/>
                    <exon start="138850" stop="138988"/>
                    <exon start="139357" stop="139397"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPSNPEGNCKLSTRRTRFFSNSMELEDSILNFSDEDESFEDDEDVKMNDIEEGELVEKISKTGLEETGDVCASSENPLPGKKNRRRRKNKGKNKSKRVSSGPITDINRFVLDVGRRLKERKSYLIWNAVGCLGLSALSDLVKEMPPGEAFFTPFSLMDLSSKIASAGTTLWCLFGLIPMFLPVFVVLPHGGCNSDLWRPEDC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="143790" PGL_stop="142114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143790" e_stop="143736"/>
            <exon e_start="143516" e_stop="143274"/>
            <exon e_start="143155" e_stop="142961"/>
            <exon e_start="142545" e_stop="142114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.996" e_score="0.945"/>
          <exon-intron don_prob="0.991" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="143790" e_stop="143736" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.996">
            <gDNA_intron_boundary i_start="143735" i_stop="143517" i_length="219"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="143516" e_stop="143274" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.919">
            <gDNA_intron_boundary i_start="143273" i_stop="143156" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="143155" e_stop="142961" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.996">
            <gDNA_intron_boundary i_start="142960" i_stop="142546" i_length="415"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="142545" e_stop="142114" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143790" stop="143736"/>
              <exon start="143516" stop="143274"/>
              <exon start="143155" stop="143057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143342" stop="143274"/>
              <exon start="143155" stop="142961"/>
              <exon start="142545" stop="142114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373197" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGGAAAAAAGTTCCACCTCTATGCAAAGCAAATGAGAACCCAGATGCATCCTG : GTATGTGCCGATTAAATCTTGCTTGCACACAATTCCTGAATCCATAGAACAAAGAGGAACCGAATGGCCTGAGGAGTGGCCTAAGAGACTTGAAACTTATCCCGAATGGATGAACAATAGAGAGAAATTGATCGCAGACAGTGAGCACTGGAAAGCTATTGTTGACCATTCTTATTTAGTTGGCTTGGGTATTGAATGGTCCAACATTCGGAATGTAATGGATATGAAAGCCATCAATGGAGG : ATTTGCAGCAGCTCTTGCACAGCAGAAGGTGTGGGTGATGAATGTTATTCCTGTACATGCACCAAACACCCTTCCCGTAGTCTTTGAAAGAGGACTTATTGGCGTGTACCACGATTGGTGTGAGGCTTTTGGTACTTATCCAAGATCATACGACCTTCTACATGCAGATCATCTCTTCTCAAGGCTTAAGAACAG : GTGCAAGCATCCCATTGTGATTGTGGTTGAGATGGACCGTATATTACGGCCTGGTGGCTGGGGAATCATACGTGACAAGGTCGAAATACTTGATCCATTAGAGAAAATATTGAGAAGCTTGCACTGGGAGATACGAATGACTTTTGCCAAAGATAAGGAAGGCATCCTTTGTGCTCAGAAGACAATGTGGAGACCTTGATGAATGCTTAGAAGCAAGTCATCTGATTATTTGGACTACAGATTCCAGTCATTTTCCTGCTGGTTATCTATACACAGTGCCATTCTTGCCAACAATTGTGTTCCCTGTTCACATATTGCAAAAGAAATTGTCGTGGATCCAGAATTTAGACGTTGTGAGTATTGAGTTCGGAAATGTATACAAAGATTTAATTCATTGTTGGATCATCTCTGAAAGGAAAGTATTTTCCAACA</gDNA_template>
            <first_frame> E  G  K  K  F  H  L  Y  A  K  Q  M  R  T  Q  M  H  P   : G  M  C  R  L  N  L  A  C  T  Q  F  L  N  P  *  N  K  E  E  P  N  G  L  R  S  G  L  R  D  L  K  L  I  P  N  G  *  T  I  E  R  N  *  S  Q  T  V  S  T  G  K  L  L  L  T  I  L  I  *  L  A  W  V  L  N  G  P  T  F  G  M  *  W  I  *  K  P  S  M  E   : D  L  Q  Q  L  L  H  S  R  R  C  G  *  *  M  L  F  L  Y  M  H  Q  T  P  F  P  *  S  L  K  E  D  L  L  A  C  T  T  I  G  V  R  L  L  V  L  I  Q  D  H  T  T  F  Y  M  Q  I  I  S  S  Q  G  L  R  T   : G  A  S  I  P  L  *  L  W  L  R  W  T  V  Y  Y  G  L  V  A  G  E  S  Y  V  T  R  S  K  Y  L  I  H  *  R  K  Y  *  E  A  C  T  G  R  Y  E  *  L  L  P  K  I  R  K  A  S  F  V  L  R  R  Q  C  G  D  L  D  E  C  L  E  A  S  H  L  I  I  W  T  T  D  S  S  H  F  P  A  G  Y  L  Y  T  V  P  F  L  P  T  I  V  F  P  V  H  I  L  Q  K  K  L  S  W  I  Q  N  L  D  V  V  S  I  E  F  G  N  V  Y  K  D  L  I  H  C  W  I  I  S  E  R  K  V  F  S  N  </first_frame>
            <second_frame>  K  E  K  S  S  T  S  M  Q  S  K  *  E  P  R  C  I  L  :  V  C  A  D  *  I  L  L  A  H  N  S  *  I  H  R  T  K  R  N  R  M  A  *  G  V  A  *  E  T  *  N  L  S  R  M  D  E  Q  *  R  E  I  D  R  R  Q  *  A  L  E  S  Y  C  *  P  F  L  F  S  W  L  G  Y  *  M  V  Q  H  S  E  C  N  G  Y  E  S  H  Q  W  R  :  I  C  S  S  S  C  T  A  E  G  V  G  D  E  C  Y  S  C  T  C  T  K  H  P  S  R  S  L  *  K  R  T  Y  W  R  V  P  R  L  V  *  G  F  W  Y  L  S  K  I  I  R  P  S  T  C  R  S  S  L  L  K  A  *  E  Q  :  V  Q  A  S  H  C  D  C  G  *  D  G  P  Y  I  T  A  W  W  L  G  N  H  T  *  Q  G  R  N  T  *  S  I  R  E  N  I  E  K  L  A  L  G  D  T  N  D  F  C  Q  R  *  G  R  H  P  L  C  S  E  D  N  V  E  T  L  M  N  A  *  K  Q  V  I  *  L  F  G  L  Q  I  P  V  I  F  L  L  V  I  Y  T  Q  C  H  S  C  Q  Q  L  C  S  L  F  T  Y  C  K  R  N  C  R  G  S  R  I  *  T  L  *  V  L  S  S  E  M  Y  T  K  I  *  F  I  V  G  S  S  L  K  G  K  Y  F  P  T </second_frame>
            <third_frame>   R  K  K  V  P  P  L  C  K  A  N  E  N  P  D  A  S  W :   Y  V  P  I  K  S  C  L  H  T  I  P  E  S  I  E  Q  R  G  T  E  W  P  E  E  W  P  K  R  L  E  T  Y  P  E  W  M  N  N  R  E  K  L  I  A  D  S  E  H  W  K  A  I  V  D  H  S  Y  L  V  G  L  G  I  E  W  S  N  I  R  N  V  M  D  M  K  A  I  N  G  G :   F  A  A  A  L  A  Q  Q  K  V  W  V  M  N  V  I  P  V  H  A  P  N  T  L  P  V  V  F  E  R  G  L  I  G  V  Y  H  D  W  C  E  A  F  G  T  Y  P  R  S  Y  D  L  L  H  A  D  H  L  F  S  R  L  K  N  R :   C  K  H  P  I  V  I  V  V  E  M  D  R  I  L  R  P  G  G  W  G  I  I  R  D  K  V  E  I  L  D  P  L  E  K  I  L  R  S  L  H  W  E  I  R  M  T  F  A  K  D  K  E  G  I  L  C  A  Q  K  T  M  W  R  P  *  *  M  L  R  S  K  S  S  D  Y  L  D  Y  R  F  Q  S  F  S  C  W  L  S  I  H  S  A  I  L  A  N  N  C  V  P  C  S  H  I  A  K  E  I  V  V  D  P  E  F  R  R  C  E  Y  *  V  R  K  C  I  Q  R  F  N  S  L  L  D  H  L  *  K  E  S  I  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143788" stop="143736"/>
                    <exon start="143516" stop="143274"/>
                    <exon start="143155" stop="142961"/>
                    <exon start="142545" stop="142347"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKKVPPLCKANENPDASWYVPIKSCLHTIPESIEQRGTEWPEEWPKRLETYPEWMNNREKLIADSEHWKAIVDHSYLVGLGIEWSNIRNVMDMKAINGGFAAALAQQKVWVMNVIPVHAPNTLPVVFERGLIGVYHDWCEAFGTYPRSYDLLHADHLFSRLKNRCKHPIVIVVEMDRILRPGGWGIIRDKVEILDPLEKILRSLHWEIRMTFAKDKEGILCAQKTMWRP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="146977" PGL_stop="146154"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146977" e_stop="146154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="146977" e_stop="146154" e_length="824"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146977" stop="146440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146845" stop="146154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146845" stop="146304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294193" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTCTCTCTTGAGCTGCCAAGATTCTTGTTTTGGGGTAAAAAAAGATTGTTGCTTTTGTTGTTTATATGGAATTCTGATTTCTGGGTATGTCTCAGGTTTTTGTTTGAGTTAGAAATGAGGAAGCACAACACAGCTTTAACAAGATTTGGGAGAAAGGTAAAAGGTTCATATCAATCTTATGGTCTTGGTGTTAAGTTAGCTGCAGTAGTAATTTTGGGTCTTTGTTTTGTATTCATTTGGTCTGTGTTTTCACCTTCTTCTTATTCAGTAGCCTATCAAAGGGACACTTTTGATGATATTAGAGAACCTATTTCATCTGCAAATAGGAAAAAGGTTACACCTTTAGTTCCTTCAACTAAGAAAGAACAACCCCATAATAAGAAACTGAAACATAGATCAAGTTCTGGTGAGAAAAAGAAGAGGGTTGATAGGTCTTCTTTGCCTTCAAAATCTGGTGGTTGGCATAAGAATGATAAAAGTGGAGTTGATAGGAAGAGAAAAGGTGAGGATCTGAAGTTACCCGAAAAGGTTGATGAGGTGAAGGAACAAGAATTGGAAGGATCTGAAACTGATGTGTTGGAGAAGGAGAATGAGGAAGACAAAATAGGAAATGATAAGCAAGAAGAAGAGAAAAAAGTAGTTGAAGTTAAAGAGAATGAGAAAGAAAAAACAGAAAATAATAGTAAACAAGAAGGAGAAGGAGTGGATGGTAAAGAGAATGAGAAAGAGGAAATAGAAAGTACTAAAGAAGAAGAAGGAGAAGGAGAAGGAGAAGGAACAGTAGATGGTAATGAAGGTAATGGTGAAATAGCTAATACTG</gDNA_template>
            <first_frame> S  I  L  S  *  A  A  K  I  L  V  L  G  *  K  K  I  V  A  F  V  V  Y  M  E  F  *  F  L  G  M  S  Q  V  F  V  *  V  R  N  E  E  A  Q  H  S  F  N  K  I  W  E  K  G  K  R  F  I  S  I  L  W  S  W  C  *  V  S  C  S  S  N  F  G  S  L  F  C  I  H  L  V  C  V  F  T  F  F  L  F  S  S  L  S  K  G  H  F  *  *  Y  *  R  T  Y  F  I  C  K  *  E  K  G  Y  T  F  S  S  F  N  *  E  R  T  T  P  *  *  E  T  E  T  *  I  K  F  W  *  E  K  E  E  G  *  *  V  F  F  A  F  K  I  W  W  L  A  *  E  *  *  K  W  S  *  *  E  E  K  R  *  G  S  E  V  T  R  K  G  *  *  G  E  G  T  R  I  G  R  I  *  N  *  C  V  G  E  G  E  *  G  R  Q  N  R  K  *  *  A  R  R  R  E  K  S  S  *  S  *  R  E  *  E  R  K  N  R  K  *  *  *  T  R  R  R  R  S  G  W  *  R  E  *  E  R  G  N  R  K  Y  *  R  R  R  R  R  R  R  R  R  R  N  S  R  W  *  *  R  *  W  *  N  S  *  Y   </first_frame>
            <second_frame>  Q  F  S  L  E  L  P  R  F  L  F  W  G  K  K  R  L  L  L  L  L  F  I  W  N  S  D  F  W  V  C  L  R  F  L  F  E  L  E  M  R  K  H  N  T  A  L  T  R  F  G  R  K  V  K  G  S  Y  Q  S  Y  G  L  G  V  K  L  A  A  V  V  I  L  G  L  C  F  V  F  I  W  S  V  F  S  P  S  S  Y  S  V  A  Y  Q  R  D  T  F  D  D  I  R  E  P  I  S  S  A  N  R  K  K  V  T  P  L  V  P  S  T  K  K  E  Q  P  H  N  K  K  L  K  H  R  S  S  S  G  E  K  K  K  R  V  D  R  S  S  L  P  S  K  S  G  G  W  H  K  N  D  K  S  G  V  D  R  K  R  K  G  E  D  L  K  L  P  E  K  V  D  E  V  K  E  Q  E  L  E  G  S  E  T  D  V  L  E  K  E  N  E  E  D  K  I  G  N  D  K  Q  E  E  E  K  K  V  V  E  V  K  E  N  E  K  E  K  T  E  N  N  S  K  Q  E  G  E  G  V  D  G  K  E  N  E  K  E  E  I  E  S  T  K  E  E  E  G  E  G  E  G  E  G  T  V  D  G  N  E  G  N  G  E  I  A  N  T  </second_frame>
            <third_frame>   N  S  L  L  S  C  Q  D  S  C  F  G  V  K  K  D  C  C  F  C  C  L  Y  G  I  L  I  S  G  Y  V  S  G  F  C  L  S  *  K  *  G  S  T  T  Q  L  *  Q  D  L  G  E  R  *  K  V  H  I  N  L  M  V  L  V  L  S  *  L  Q  *  *  F  W  V  F  V  L  Y  S  F  G  L  C  F  H  L  L  L  I  Q  *  P  I  K  G  T  L  L  M  I  L  E  N  L  F  H  L  Q  I  G  K  R  L  H  L  *  F  L  Q  L  R  K  N  N  P  I  I  R  N  *  N  I  D  Q  V  L  V  R  K  R  R  G  L  I  G  L  L  C  L  Q  N  L  V  V  G  I  R  M  I  K  V  E  L  I  G  R  E  K  V  R  I  *  S  Y  P  K  R  L  M  R  *  R  N  K  N  W  K  D  L  K  L  M  C  W  R  R  R  M  R  K  T  K  *  E  M  I  S  K  K  K  R  K  K  *  L  K  L  K  R  M  R  K  K  K  Q  K  I  I  V  N  K  K  E  K  E  W  M  V  K  R  M  R  K  R  K  *  K  V  L  K  K  K  K  E  K  E  K  E  K  E  Q  *  M  V  M  K  V  M  V  K  *  L  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146976" stop="146155"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFSLELPRFLFWGKKRLLLLLFIWNSDFWVCLRFLFELEMRKHNTALTRFGRKVKGSYQSYGLGVKLAAVVILGLCFVFIWSVFSPSSYSVAYQRDTFDDIREPISSANRKKVTPLVPSTKKEQPHNKKLKHRSSSGEKKKRVDRSSLPSKSGGWHKNDKSGVDRKRKGEDLKLPEKVDEVKEQELEGSETDVLEKENEEDKIGNDKQEEEKKVVEVKENEKEKTENNSKQEGEGVDGKENEKEEIESTKEEEGEGEGEGTVDGNEGNGEIANT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="149824" PGL_stop="147894"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="149824" e_stop="149720"/>
            <exon e_start="149421" e_stop="149183"/>
            <exon e_start="148971" e_stop="148925"/>
            <exon e_start="148268" e_stop="147894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.992"/>
          <exon-intron don_prob="0.988" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="149824" e_stop="149720" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="149719" i_stop="149422" i_length="298"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="149421" e_stop="149183" e_length="239"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="149182" i_stop="148972" i_length="211"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="148971" e_stop="148925" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.979">
            <gDNA_intron_boundary i_start="148924" i_stop="148269" i_length="656"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="148268" e_stop="147894" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149824" stop="149720"/>
              <exon start="149421" stop="149183"/>
              <exon start="148971" stop="148925"/>
              <exon start="148268" stop="147894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542295" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCCTCTGTATGACATTTTGAATGAGTTTCAGAAGGGCCATAGCCACATCGCTGTTGTATATAAAGATCTGAACGAGACGAAAGATATGCCAGTGAATGATAAAG : ATGCTGATAGCACAACACCAAAATCTAACTCGCATGACATTAAGACTGCATTACATAAGGCTGATGATGACCAAGTCCCAAAGAAATCTCCTCCCCCTACTCCTGCTTTCAAGAAGAGACACAAAGGTTGCTCATTTTGTATTTTGGATTTGGAAAACACTCCAATACCAGAGATCCCTTCCAATCAAGAAGTTGTTGGTGTTATTACTATGGAAGATGTCATTGAGGAGCTTCTTCAG : GAGGAGATATTGGATGAAACCGATGAATATGTCAACATTCATAACAG : GATAAAGGTGAACATGAATTCTTCACAAGATTTTTCAGCTGAACAGAATTCCTCAACTCAGCTGCTCCAGGCCCTCTGACTGTTCAATCACTATCTTTTAAGACTTCTCAATAGCTACCTCAAGTATAGCAACATGTTAAATGTATAGTTTCTCTATTCTAGCATATCCTAATTCTAGTATTTTTGTATTACTGTTTAAACTTAGATTAGACTGGTCCCGTAGAGCGCGAATTCGGGTAGATAGTATAGCCCTATATACAGAGGAATAGGCTGCAAATTCAACAAGAAAGAAATTTGGTTTGGATTGTAAAATTGTAATGCAGTGTATTGCTGGAGTTTTCAGACATACAGAGTTCATTGAGTGGAATCTCATCA</gDNA_template>
            <first_frame> C  L  C  M  T  F  *  M  S  F  R  R  A  I  A  T  S  L  L  Y  I  K  I  *  T  R  R  K  I  C  Q  *  M  I  K  :  M  L  I  A  Q  H  Q  N  L  T  R  M  T  L  R  L  H  Y  I  R  L  M  M  T  K  S  Q  R  N  L  L  P  L  L  L  L  S  R  R  D  T  K  V  A  H  F  V  F  W  I  W  K  T  L  Q  Y  Q  R  S  L  P  I  K  K  L  L  V  L  L  L  W  K  M  S  L  R  S  F  F  R :   R  R  Y  W  M  K  P  M  N  M  S  T  F  I  T   : G  *  R  *  T  *  I  L  H  K  I  F  Q  L  N  R  I  P  Q  L  S  C  S  R  P  S  D  C  S  I  T  I  F  *  D  F  S  I  A  T  S  S  I  A  T  C  *  M  Y  S  F  S  I  L  A  Y  P  N  S  S  I  F  V  L  L  F  K  L  R  L  D  W  S  R  R  A  R  I  R  V  D  S  I  A  L  Y  T  E  E  *  A  A  N  S  T  R  K  K  F  G  L  D  C  K  I  V  M  Q  C  I  A  G  V  F  R  H  T  E  F  I  E  W  N  L  I  </first_frame>
            <second_frame>  A  S  V  *  H  F  E  *  V  S  E  G  P  *  P  H  R  C  C  I  *  R  S  E  R  D  E  R  Y  A  S  E  *  *  R :   C  *  *  H  N  T  K  I  *  L  A  *  H  *  D  C  I  T  *  G  *  *  *  P  S  P  K  E  I  S  S  P  Y  S  C  F  Q  E  E  T  Q  R  L  L  I  L  Y  F  G  F  G  K  H  S  N  T  R  D  P  F  Q  S  R  S  C  W  C  Y  Y  Y  G  R  C  H  *  G  A  S  S   : G  G  D  I  G  *  N  R  *  I  C  Q  H  S  *  Q  :  D  K  G  E  H  E  F  F  T  R  F  F  S  *  T  E  F  L  N  S  A  A  P  G  P  L  T  V  Q  S  L  S  F  K  T  S  Q  *  L  P  Q  V  *  Q  H  V  K  C  I  V  S  L  F  *  H  I  L  I  L  V  F  L  Y  Y  C  L  N  L  D  *  T  G  P  V  E  R  E  F  G  *  I  V  *  P  Y  I  Q  R  N  R  L  Q  I  Q  Q  E  R  N  L  V  W  I  V  K  L  *  C  S  V  L  L  E  F  S  D  I  Q  S  S  L  S  G  I  S  S </second_frame>
            <third_frame>   P  L  Y  D  I  L  N  E  F  Q  K  G  H  S  H  I  A  V  V  Y  K  D  L  N  E  T  K  D  M  P  V  N  D  K   : D  A  D  S  T  T  P  K  S  N  S  H  D  I  K  T  A  L  H  K  A  D  D  D  Q  V  P  K  K  S  P  P  P  T  P  A  F  K  K  R  H  K  G  C  S  F  C  I  L  D  L  E  N  T  P  I  P  E  I  P  S  N  Q  E  V  V  G  V  I  T  M  E  D  V  I  E  E  L  L  Q  :  E  E  I  L  D  E  T  D  E  Y  V  N  I  H  N  R :   I  K  V  N  M  N  S  S  Q  D  F  S  A  E  Q  N  S  S  T  Q  L  L  Q  A  L  *  L  F  N  H  Y  L  L  R  L  L  N  S  Y  L  K  Y  S  N  M  L  N  V  *  F  L  Y  S  S  I  S  *  F  *  Y  F  C  I  T  V  *  T  *  I  R  L  V  P  *  S  A  N  S  G  R  *  Y  S  P  I  Y  R  G  I  G  C  K  F  N  K  K  E  I  W  F  G  L  *  N  C  N  A  V  Y  C  W  S  F  Q  T  Y  R  V  H  *  V  E  S  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149822" stop="149720"/>
                    <exon start="149421" stop="149183"/>
                    <exon start="148971" stop="148925"/>
                    <exon start="148268" stop="148190"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLYDILNEFQKGHSHIAVVYKDLNETKDMPVNDKDADSTTPKSNSHDIKTALHKADDDQVPKKSPPPTPAFKKRHKGCSFCILDLENTPIPEIPSNQEVVGVITMEDVIEELLQEEILDETDEYVNIHNRIKVNMNSSQDFSAEQNSSTQLLQAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="148271" e_stop="147917"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="148271" e_stop="147917" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="148271" stop="147917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238857" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGATAAAGGTGAACATGAATTCTTCACAAGATTTTTCAGCTGAACAGAATTCCTCAACTCAGCTGCTCCAGGCCCTCTGACTGTTCAATCACTATCTTTTAAGACTTCTCAATAGCTACCTCAAGTATAGCAACATGTTAAATGTATAGTTTCTCTATTCTAGCATATCCTAATTCTAGTATTTTTGTATTACTGTTTAAACTTAGATTAGACTGGTCCCGTAGAGCGCGAATTCGGGTAGATAGTATAGCCCTATATACAGAGGAATAGGCTGCAAATTCAACAAGAAAGAAATTTGGTTTGGATTGTAAAATTGTAATGCAGTGTATTGCTGGAGTTTTCAGACATACAGA</gDNA_template>
            <first_frame> Q  D  K  G  E  H  E  F  F  T  R  F  F  S  *  T  E  F  L  N  S  A  A  P  G  P  L  T  V  Q  S  L  S  F  K  T  S  Q  *  L  P  Q  V  *  Q  H  V  K  C  I  V  S  L  F  *  H  I  L  I  L  V  F  L  Y  Y  C  L  N  L  D  *  T  G  P  V  E  R  E  F  G  *  I  V  *  P  Y  I  Q  R  N  R  L  Q  I  Q  Q  E  R  N  L  V  W  I  V  K  L  *  C  S  V  L  L  E  F  S  D  I  Q  </first_frame>
            <second_frame>  R  I  K  V  N  M  N  S  S  Q  D  F  S  A  E  Q  N  S  S  T  Q  L  L  Q  A  L  *  L  F  N  H  Y  L  L  R  L  L  N  S  Y  L  K  Y  S  N  M  L  N  V  *  F  L  Y  S  S  I  S  *  F  *  Y  F  C  I  T  V  *  T  *  I  R  L  V  P  *  S  A  N  S  G  R  *  Y  S  P  I  Y  R  G  I  G  C  K  F  N  K  K  E  I  W  F  G  L  *  N  C  N  A  V  Y  C  W  S  F  Q  T  Y  R </second_frame>
            <third_frame>   G  *  R  *  T  *  I  L  H  K  I  F  Q  L  N  R  I  P  Q  L  S  C  S  R  P  S  D  C  S  I  T  I  F  *  D  F  S  I  A  T  S  S  I  A  T  C  *  M  Y  S  F  S  I  L  A  Y  P  N  S  S  I  F  V  L  L  F  K  L  R  L  D  W  S  R  R  A  R  I  R  V  D  S  I  A  L  Y  T  E  E  *  A  A  N  S  T  R  K  K  F  G  L  D  C  K  I  V  M  Q  C  I  A  G  V  F  R  H  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0075G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 617 chains have been computed
$ 
$ memory statistics:
$ 1362648 bytes spliced alignments in total
$ 573 spliced alignments have been stored
$ 2378 bytes was the average size of a spliced alignment
$ 59088 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 2685 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 691 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-10 04:57:36
-->
