<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-26 18:36:50"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0101P06-1tnnv/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-wbm9nn/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wbm9nn/sgn_marker_seqs" ref_id="SGN-M8345" ref_strand="+" ref_description="SGN-M8345 C2_At4g24175 [cosii_markers]">
      <seq>caaaaatggctaatgtaatgaagcctctgatgaattggccaaaatggcatcactatttatacgttcgcgcttcattcatccactttgttcaatctcaatctcaatctccactcttctcaacctgcaatgttcgccgactgccgtcgttcacggcatcaccttccggttaccggcaagctcattttcgttccggcgcggcacttaaatcacgtgaaagtccattaccgttagatcaatcagagggcgacagcgattccgatgaaaaaacaaggaagagtcgtaacgagaagaagcgtgaagctcgacgcgccgtccggtgggctatggatttagctaagttctctgctcctcaaattaagcgcattctcagagtggcttcaacggagcaagaggtatacgaagccgttatgctggccaagagactaggtcctgatgtacgagaaggaaagcgaaggcaattcagttacataggtagattattgcgagaagttaagcctgaattgatggatggtttaattcaggcaacaaaagatggagaccaaactaaatttcaggctttatctggttcggaactttcggctaccgaagatgttgatgaggaagttgaagagactgaatatgaggatgacgaagagagttctgaggacaatattgctttagccgatagatggtttgatggcttggtcaataaggacgttgacatctctaaagaatctattctctaagtgaggttgattttgatcgcccaggagtacgtggtcttgttaggaatgtacaatcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-1tnnv/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="15620" stop="11035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15320" g_stop="14951" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14950" i_stop="14883" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14882" g_stop="14834" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="419" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14833" i_stop="14749" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14748" g_stop="14697" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="471" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14696" i_stop="12368" i_length="2329">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12367" g_stop="12204" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="635" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12203" i_stop="11911" i_length="293">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11910" g_stop="11797" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="749" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11796" i_stop="11371" i_length="426">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11370" g_stop="11335" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="784" r_length="35" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-M8345" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15320" e_stop="14951"/>
          <exon e_start="14882" e_stop="14834"/>
          <exon e_start="14748" e_stop="14697"/>
          <exon e_start="12367" e_stop="12204"/>
          <exon e_start="11910" e_stop="11797"/>
          <exon e_start="11370" e_stop="11335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGCTAATGTAATGAAGCCTCTGATGAATTGGCCAAAATGGCATCACTATTTATACGTTCGCGCTTCATTCATCCACTTTGTTCAATCTCAATCTCAATCTCCACTCTTCTCAACCTGCAATGTTCGCCGACTGCCGTCGTTCACGGCATCACCTTCCGGTTACCGGCAAGCTCATTTTCGTTCCGGCGCGGCACTTAAATCACGTGAAAGTCCATTACCGTTAGATCAATCAGAGGGCGACAGCGATTCCGATGAAAAAACAAGGAAGAGTCGTAACGAGAAGAAGCGTGAAGCTCGACGCGCCGTCCGGTGGGCTATGGATTTAGCTAAGTTCTCTGCTCCTCAAATTAAGCGCATTCTCAGGTAATTAGATAACTTTCTAGTTACAATTGACTAAATGATATAAGTTAATGTTTCATATTTCACTGTAGAGTGGCTTCAACGGAGCAAGAGGTATACGAAGCCGTTATGCTGGCCAAGGTAGTTTTATGTTCTATCAATTGTGAGGTATTATTGCTATTTTTTCGTTGTTAGTGAGTGTAACATGTTTGCTCATTTGCCGCAGAGACTAGGTCCTGATGTACGAGAAGGAAAGCGAAGGCAATTCAGTTACATAGGTATGCTTTAAGATGCTTACTTTCTCCATCAAAGTGATCTTTATATCCAAATGTTTTATAGCATCGTTCTGTATTCAGATAAGCAGAAGTTGTAAGTTATAGTACCTTTAATCTATTAGATATCTCAGTTGTATACTTATATCCAATGTAGGATTAATATAGTCAATATTGATTACTTGATAAGTAAAAAGGAACTCGCAAATTACTTAATTAGCATGGTAGTGAACTGTTTTAAAAGATGGCATATAATCAAGAGCATTTGGTAGGAAAGAAGGAGAATATATGGAGTATAAGGATTTAGGAAAGAAGTATAGTAATCTCAATTTGCTAAAATTGAAAAAGCAGATGAGTTAGTAGTATGCAGTGCCGTATTTGAAATTCATAAACTTAATGTTTTACCTTGATTCAAATCACATTACACTTTTATCCATTATTTTGAATTCATTTGAAACTACACTCTAAAACATGACATTTTAAATTTACAAGTATGGATCGCCTCTTTTTAGCAGATGTCTCTATCAAAATGGGTCTATTACTTTCCTCGACCCCTAAAGGACAAACATGTTGACATGAATCCGTATATGGTTGTAGTTTACTTACACCAACAACATCAAATTATTAGAGAAGAACAGTACCCTTGGAGTTGTATTCTTCCTTACTAGTTGGTGCTTATCCCGCATATATATATTCTACCTTAGTGTTGGTGCTTATCCCGCATATATATAGTCTACCTTAGTGCTGGTGCCATCTTCTTTTTTATTTATTTGTATAAAATGGCGGGGGGGGGGGGGTTTCGACATTGAGAGGGACTACACTGGGTATGATGATGTTGTAGGATTTTTAGTGCTGGGGCTACCTAAAACCGCTCTTCCAGTGATTTTGTGATGTTAGAAACAATTCATAAATTAACAACTCAAGAAGAGGGAAGCATTTTTTGTCAATCTATTGTCGGTCATATATAATCTAAATTTCTCTGTATTGTTCAACCTCTGATCTTGTAAACATCTTAGTTTTCTTTGCCTCACTGGAACAACTATGGGATCTATGGTTCTTTCCGTCTGATAAATTCAGTAACTGATTTATCATAAGCTTTCTCTAGTCATCAATTTTACGCTATAAAAACAAATACTTGTGTTACACAAAAAAATAACAACAATTGGTGAAAGAAGTTTATGTCGCATAGAATCTTCTTGTAGTTCATATATTTTGCATCCACAAAAGCAAATAATTTATGAGATGTAATAGTAGGCTTTTAGGGGATTGATGCAAAAAGATAGAACTGAGCAGTAGGAATGCTTGTGAAACTGCCTTCAGATCTGATGCATAACGTTTGGTAATTTATCGAGTTCCTTTTGCAAAGTTTTTCATTCTCACCATTTGTCATCGGAGTGGCTTCTGTGACAGATTCAATGGAAAGGGCTCAAAGGAAATTTGATCTCTTTGGTGCAGAATGGAATGGATAAACAAATTTGTGAGTTGAGGTTGATGATCCCAAAACGTTATTGGGATAGCAAAAATAGAAAATTAGTGAATGGTAATAGAGTTCTAATTTGAATCCTTCTAATTTCCTTATCTCATACTTTTTAGGAGGTTCATGCAAATGGAGGGTAAACACTGAATAGTAATACTGCAGCGCTGTCAATTGAAAGAAGAGGAATCAACTTGATATTATTCTTGAACAGAAGCACACTAATAATAAATTTATTCTTTTGAGAAGGGTCATTCTAGTGAAAAAGGTGTTGGTGTGTCACTTAATGTTTGACCTATATATGCTATCTCTTATTAGAAGATCCAGCAAATTATATACAGCTGTTTGAGTACATACATGTTAATAACAGAGGAAGCAATCTGAAAATTAGATATCCCTTGTGAATGCATTATCCACTTCCTGCCTTTTCATTTCTTGTTCCAGGCCACAGTGAATATGCTTGTCATGTCTTTTGTTCCATTTTCTCTAGAACTGTGCTTTGTATAATTGATTTGTGAACTGTTCATTCCCATGACTGAAAAAATCATGATGTTCGGTATGAGTTGTGGTTTATTAATTGATTGATCCCTCATAGTAATTGTGATGCATCATATTACTAAAGTTCTATTAATGTTGTTATTTATCTACATTTTGATAAGAGATTGTTTACATTGATGGTTTGAATTCTAAAATCTATGCACTCATAAACCATGGAATTTTTCTGCTGAATATTTTGGGAGTAAGTTAACCTTGGAAATGTTTGCAGTGTTATAATTTCAGTTTCTTGTCTTGAAATTTGATCACATGAAATTAATGTATGTTGGATCTATATGCTCACGATGTAATATGAATTCATGTTAGGTAGATTATTGCGAGAAGTTAAGCCTGAATTGATGGATGGTTTAATTCAGGCAACAAAAGATGGAGACCAAACTAAATTTCAGGCTTTATCTGGTTCGGAACTTTCGGCTACCGAAGATGTTGATGAGGAAGTTGAAGAGACTGAATATGAGGATGACGAAGAGGTATGTCATAATCTCACTCCTCATTTTGGGGATCAAATTTCTTTGGCTGCTTTACTGTGTTTAAAGTTATGACTGAGCACAAGAAACTACAATCGCGAATCTATTTCCATGAAAAATGAACAAGTATGAGAACAACTGTTCTGCTCGTCTGTTTAATAAAAGAGCTGATTACGAAACCTGCATAATGTGGGTTAGATAACATAACAGGACAACAATTTAAATTTTACTTGGGAACTAATTTCAGGACTGCAATTGAAAGTTTGAAGTTCTCTTTTTCTTGTGCTTATTTTCAGAGTTCTGAGGACAATATTGCTTTAGCCGATAGATGGTTTGATGGCTTGGTCAATAAGGACGTTGACATCTCTAAAGAAATCTATTCTCTAAGTGAGGTTGATTTTGATCG-CCAGGTTAGTTCAGATGTTATACGCAGGTCTGGAATTATCTTCTTTTTTGGATTTTCTGGTGTATAAGTTGAATTGACACATAATTTTATGATTTTCATGCTCAATCTCTTCTTGTATATGTTCATTTCAAAAGACAAATAATCGGTAAAGGAAAACTAGTAATGAAGAATTAATATGGACAGATCAGTATTTCAGGCTGTCAAATGTGCACCCTGACCTTAAATGACATAGTTGTTAGCTTAGTTAACTGCGCGTTTCATTACAATTAGCTTAAAGGTGTCAACAATTTACTTGTGCTGTTTTTATGGAATAAGCTGCCCGTACTTGAGATATTAAAGAAAAATTATGTGTCTTTTGTATGTAAATTATAATTTGCTTGTCTTGCCATGGTATAATATTTATCTGATTATGTTCTATCTCGTTGTACAGGAGTTACGTGGTCTTGTTAGGAATGTACAATCAATA</genome_strand>
        <mrna_strand>CAAAAATGGCTAATGTAATGAAGCCTCTGATGAATTGGCCAAAATGGCATCACTATTTATACGTTCGCGCTTCATTCATCCACTTTGTTCAATCTCAATCTCAATCTCCACTCTTCTCAACCTGCAATGTTCGCCGACTGCCGTCGTTCACGGCATCACCTTCCGGTTACCGGCAAGCTCATTTTCGTTCCGGCGCGGCACTTAAATCACGTGAAAGTCCATTACCGTTAGATCAATCAGAGGGCGACAGCGATTCCGATGAAAAAACAAGGAAGAGTCGTAACGAGAAGAAGCGTGAAGCTCGACGCGCCGTCCGGTGGGCTATGGATTTAGCTAAGTTCTCTGCTCCTCAAATTAAGCGCATTCTCAG....................................................................AGTGGCTTCAACGGAGCAAGAGGTATACGAAGCCGTTATGCTGGCCAAG.....................................................................................AGACTAGGTCCTGATGTACGAGAAGGAAAGCGAAGGCAATTCAGTTACATAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATTATTGCGAGAAGTTAAGCCTGAATTGATGGATGGTTTAATTCAGGCAACAAAAGATGGAGACCAAACTAAATTTCAGGCTTTATCTGGTTCGGAACTTTCGGCTACCGAAGATGTTGATGAGGAAGTTGAAGAGACTGAATATGAGGATGACGAAGAG.....................................................................................................................................................................................................................................................................................................AGTTCTGAGGACAATATTGCTTTAGCCGATAGATGGTTTGATGGCTTGGTCAATAAGGACGTTGACATCTCTAAAG-AATCTATTCTCTAAGTGAGGTTGATTTTGATCGCCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GAG-TACGTGGTCTTGTTAGGAATGTACAATCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wbm9nn/sgn_marker_seqs" ref_id="SGN-M6759" ref_strand="+" ref_description="SGN-M6759 C2_At1g30755 [cosii_markers]">
      <seq>ctctggctcagcatacgtgtgaattatatcacgaactgcacgcactggacagattcgaacaggattatcggaggaaacttgaggaattagattccttaaatctacctcgaaaaggtgaaggtctcatgatgttacagagtgaactaaaacatcaaagaaagattgcgaggagcttgaaaaagaaatctctttgggctaagggtttggaggaggttgtggagaagcttgttgacattgttacttatatacatcaagcaattgtggaagcatttggggacaatggattgacatctgctgtcaaggagccagtgaagaaacaagaaagactgggagtagctggtctggctttacactatgctaacttagttactcaaattgataacattgcttcacggcccacctctcttccgcctaacatgagggatggattatataatggattacctccttccataaaaacggcccttcgttcacgtctgcaggcggttgatgcaaaggaagagctcacaattcctcagattaaagcagagatggaaaaaactcttcagtggcttgtcccagtagctgcagatactacgaaagcacaccaaggctttggatgggttggagagtgggccaacaccggaagcgagtttggcaagaagaacctccacaagtttccctcattcgactgcagacactctaccatgcagacaaacagaaaatggattaccatgtcctcgaactagtgacatggcttcaccgtttgatcagcctggtaagatttaacgggcccaaggctttcccaggacgatcaccaacacgcaaaggacttaatctgcagactgagttgatgatgaatactacctcaaaaacgcctaaggttcagatttctcttgaagataggaacttactcgagaaagtgatgaaacggaaatgtttggtccctggaagaagcaagagccaggagtttctgttgcctaagaatcggaaaaaggtgtgggcgctaagtagaagcatgggtaactcccctcgtaccgactttcaacatccaaaggctactgttttggatatattagatggcttacattagcattttgagttgctaaagagagatctcaagcaaaaaaaagttcatttttttgttttcttgattcttagctccccccttctttggaaccaaaatctctttgtatatagtctctctatcatatggtgattgggaaaattgttatactgtagcatattattatcaccaaaatacatttagattctagtggaagtgaatgttcaagggtgatagggaatgatgtttatttgggcattttgcagccaacttgcaatgaatgttttggtaatatgaagtgtaaccataagaaaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-1tnnv/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="30664" stop="26071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30364" g_stop="30345" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30344" i_stop="29753" i_length="592">
            <donor d_prob="0.965" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29752" g_stop="29659" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="114" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29658" i_stop="29470" i_length="189">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29469" g_stop="29372" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="212" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29371" i_stop="29127" i_length="245">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29126" g_stop="29057" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="282" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29056" i_stop="28254" i_length="803">
            <donor d_prob="0.890" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28253" g_stop="28150" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="386" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28149" i_stop="28057" i_length="93">
            <donor d_prob="0.399" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28056" g_stop="27940" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="503" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27939" i_stop="27804" i_length="136">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27803" g_stop="27727" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="580" r_length="77" r_score="0.948"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27726" i_stop="27612" i_length="115">
            <donor d_prob="0.106" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27611" g_stop="27567" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="625" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="27566" i_stop="27110" i_length="457">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="27109" g_stop="26382" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="1351" r_length="726" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1357" polyA_stop="1377"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-M6759" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>1353</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30364" e_stop="30345"/>
          <exon e_start="29752" e_stop="29659"/>
          <exon e_start="29469" e_stop="29372"/>
          <exon e_start="29126" e_stop="29057"/>
          <exon e_start="28253" e_stop="28150"/>
          <exon e_start="28056" e_stop="27940"/>
          <exon e_start="27803" e_stop="27727"/>
          <exon e_start="27611" e_stop="27567"/>
          <exon e_start="27109" e_stop="26382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGGCTCAGCATACTTCTGTAAGTTCGTACCTTGTTTTGAAGTGCATGGTGGCTTTCTACTAATTTTTGTTTCTCAACATGTTACGTGTTTTACAGTATAAGTAAATCCTTCCTTCTGTTCTTGGAGTGAGAATTTCTTTTCATATCCTTTTTACTTTCATGAACTGTAACAATTTTGGGACAATATTGGAGTGGTTTCTTCTTGAGGGAATGGAGGGTCTTTCAGAAACAGCCTCTCTACCTCACAAGGTAGGGGTAAGGCCTGCATACACTCTACCTTCCCCGGATCCCACTAGCATGTTGTTGGTTTCTTCTCGGCTTTATAACTTCCTTGATGTTATACTAGACCTATTGTATGAGATTTGCCAATATTTACATTTACCAGCAAGAATATTTTCTGATTTATGTTGGTTGTACTGTCTTGTATAAGGAAAAAATATATTAAGAATGGTATGAGTTGAAGTGTAACCAAGACGGGAAGTTACTTGATTCTTTTCCTATGTCCGGTTTTATTTACTCTGAAGTTGATGTTCTCTCTAGAAGTTATGGCTCACATCTATATTGATATTCCAAAGTCATTGATGAGACACTGCCACTGGTATCTTTACAGGAATTATATCATGAAATGCATGCACTGGACAGATTCGAACAGGATTATCGGAGGAAACTTGAGGAATTAGATTCCCTAAATCTACCTCGAAAAGGTATATCAGTGTTACTTTTTTTTTAGTTCTCTGTGATTTGTCATTTGTGCAAACTTAGCTGGATGACGGTTTGAGTAAAAATGTTGTGCAGATTCTTTTTGTGTATATTAAAAATGTCTTCTTTGGATTCTTCATTTTGATAATTTGGTAGATTAACATACAAATTGACACATTTTCTTTCACTTGTAGGGGAAGGTCTCATGATGTTACAGAGTGAGCTAAAACATCAAAGAAAGATTGCGAGGAGCTTGAAAAAGAAATCTCTTTGGGCTAAGGGTTTGGAGGAGGTACTTTGACCAAAACTTTTCTTTATCTCATTTTCAAGTAAAGCATTTTTCACTTTTCTAATAATCAAATTAGTAGAACTCGTAAAAAGAGAACTTTTTCAAAATTACCGTGGAAATTGGTAAGCTCATGGAGGCAACAAGATCTTCATTTGATTTTGTGATTGAAATGAAAATTGTTTTTTTCTTTTAAGAGTGTCATTATTTTCAGCGATAATCACTTAGTGATCCCAAATTAATCATTGTAGGTTGTGGAGAAGCTTGTTGACATTGTTACGTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAACGGTATGAGAGTACATGTATTTTTTTGTTGATCAGTTTAAATTTGATGGCTGTCGTTATCAGCATTCTATTATTTGCAAATAACGAAGCTTAGAGTATCTAACCTTCATTGATGTTTGATAAATGGCTGTTTGCGCTCCACACCACTAAATTGCACCAGCCACTTCATTCTTTTGCCTCAGATACCTTTTACATGTTAACATTTTATCTTATTGAACTATTTTTCATTAATAATGGTTATAGAGGAAATCCTAAGCCAAATCCTGACTTTAAAAAAAAATGTAAAATGGTACGGGAAATTAAACAAAAGGGTAACTCCTGAGGAAAAAGGGAGGACAATCTTCAGTGTTTTTCCTTTTTCGGTCTTCAGTCCAAGTTTTCCAAGTCACTACAATTGCGTAACATTTTAGGAAAGATGACAGAGTTGTGACTAATCATTGATCTGTACATTTACCAAGCGAGGAATTCTTACTAAAGATTACGGCAAAGTCAAGCTATATATTCTCTCCGTTTCAATTTGTTTGCCCTGCTTTCTTTTTTAGTCCATTTCATAAAGTACGTCTCTTTCCTTTTTTGGCTACTCGTTAACTCCAACTGTCTATGTGACACGTTTAAGACCACAAGATTAAAAAATCTTCTTTATTTTCTTTAACTCCGGATCAATCAAAACCACACAAACAAATTGAAATGGGGGGAGTACTCTAGCTATTTACAATGCAGAGTTAACTTGCATATGTACACACATTGTCTCTTCTTTCCCAGAGTATGCTTTCTTAAATATAGACGAATCTCTATGCTTGTTGCAGGATTGACATCTGCTGTCAAGGAGCCTGTGAAGAAACAAGAAAGATTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATTGTAAGTTTTAGTGCTGAATTAGAGCGATACTGATTGCGCTGTTTACGACTGCTCCAATAGTATTCATAACAATGGGATTTGATATCATGTCAGGCTTCACGGCCCACCGCTCTTCCCCCTAACATGAGGGATGGATTATATAATGGATTGCCTCCTTCCATAAAAACGGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAGGTTTGTCCTCCATATTAATTTCTCATTCTTCCCCCCTTTCTCCCTTTTTCTCTTTTTGGGGTCTAATGATACCTCCCGTTTGCATTTAAGTTCTATATCTGTATAAAATAGTTTCTCCACGTTGTGCTTTTTGCAGCTCACAATTCCGCAGATTAAAGCAGAAATGGAAAAAACTCTTCACTGGCTTGTCCCAGTCGCTGCAGATACTACGAAGTATGTGTTTCGACAAAAGCTCTCCCCCCTAACCACCACCACACACACGCACAAACTTTTGCTAATATATGCTGATTCTTTTTTGTGTTTTTCTCTCTTGGCAATGGGATAACAGAGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAACACCGGGTTAGTTCCATAAGTCTCTACATGAGCAAAATTGAATATTTACATTTGCAGTTTAGTTTGGATAGCATTCTTCAAGAATATAATATTTGGAGGCGGATGCAGCCATGCACTGTGGGTTCAATTGAACCTCGTTTATTCTATATAACATCATTTGTTTTGATATAATTTTTTGGTTGTGATAGTGAATGTTATTAATAGAGAATATATGATACAACATAACATGAACGATTGGTTCAAAGAAAATATGGTTGTTATATAGTTACATGCTTTATAGGATGCCAGATGGCTATTATAGAGAGGGCTGACTGTATATATAAGCATAATTTCAATAAATATTAGATTTTTGAACCCATAATTCAGTTGTACAATGATATCTGTTAAGGACTTCAAAAAATTGAAACATCAAAGTTTTAAATTTTCGATCAGCTTCTAATGTTATTGGTTTTTTCTCTTTCAGAAGCGAGTTTGGCAAGAAGAACCCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCTGACAAACAGAAAATGGACTACCATGTCCTTGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATATAATGGGCCCAAGGCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGGGCATTTTGCAGCCAACTTACTATGAATGTTTTGGTAATATGAAATGTAACC</genome_strand>
        <mrna_strand>CTCTGGCTCAGCATACGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTATATCACGAACTGCACGCACTGGACAGATTCGAACAGGATTATCGGAGGAAACTTGAGGAATTAGATTCCTTAAATCTACCTCGAAAAG.............................................................................................................................................................................................GTGAAGGTCTCATGATGTTACAGAGTGAACTAAAACATCAAAGAAAGATTGCGAGGAGCTTGAAAAAGAAATCTCTTTGGGCTAAGGGTTTGGAGGAG.....................................................................................................................................................................................................................................................GTTGTGGAGAAGCTTGTTGACATTGTTACTTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGACATCTGCTGTCAAGGAGCCAGTGAAGAAACAAGAAAGACTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATT.............................................................................................GCTTCACGGCCCACCTCTCTTCCGCCTAACATGAGGGATGGATTATATAATGGATTACCTCCTTCCATAAAAACGGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAG........................................................................................................................................CTCACAATTCCTCAGATTAAAGCAGAGATGGAAAAAACTCTTCAGTGGCTTGTCCCAGTAGCTGCAGATACTACGAA...................................................................................................................AGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAACACCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGTTTGGCAAGAAGAA-CCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCAGACAAACAGAAAATGGATTACCATGTCCTCGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATTTAACGGGCCCAAGGCTTTCCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAATACTACCTCAAAAACGCCTAAGGTTCAGATTTCTCTTGAAGATAGGAACTTACTCGAGAAAGTGATGAAACGGAAATGTTTGGTCCCTGGAAGAAGCAAGAGCCAGGAGTTTCTGTTGCCTAAGAATCGGAAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAA-GTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCCCCTTCTTTGGAACCAAAATCTCTTTGTATATAGTCTCTCTATCATATGGTGATTGGGAAAATTGTTATACTGTAGCATATTATTATCACCAAAATACATTTAGATTCTAGTGGAAGTGAATGTTCAAGGGTGATAGGGAATGATGTTTATTTGGGCATTTTGCAGCCAACTTGCAATGAATGTTTTGGTAATATGAAGTGTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wbm9nn/sgn_marker_seqs" ref_id="SGN-M359-R" ref_strand="+" ref_description="SGN-M359-R TG37-R [rflp_markers_reverse]">
      <seq>aacttacattccatccaaccatggaggaagcctgaaatcatcaattgagaagacagccttcaattcaggagaagataccaatttcaaacgtggggcagaaggagcactggagtatttcctgccaactggatatataacctgtcacattagtaaagttaatcaaaagagaaccgagaaaggaagaaaaaatgacaagccaaaagatgattagacaaacaaattactcatttagtctcaatgataaatacaagctgaagaaacaattaaaccaacaaatgaactatttaacctccacaaaaagtttcagttttaacacttaaatgatgcagctttaggaatgatatgaaagcaagtaaatgacaaaaaaaatgtattgcattcattcatccaaattttccccagaagatatgcaaaaataatgcttcaaatgatcctcaaatgatgccatgcttaaatctccttcaatagtaaatgacaaaaaagatgtattgcattcattcatcctaattttcccccagagttacgcaaaaataatgcctcaaatgatgcgatgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-1tnnv/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="47026" stop="45870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46726" g_stop="46170" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-M359-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M359-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46726" e_stop="46170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTACATTCCATCCAACCATGGAGGAAGCCTGAAATCATCAATTGAGAAGACAGCCTTCAATTCAGGAGAAGATACCAATTTCAAACGTGGGGCAGAAGGAGCACTGGAGTATTTCCTGCCAACTGGATATATAACCTGTCACATTAGTAAAGTTAATCAAAAGAGAACCGAGAAAGGAAGAAAAAATGACAAGCCAAAAGATGATTAGACAAACAAATTACTCATTTAGTCTCAATGATAAATACAAGCTGAAGAAACAATTAAACCAACAAATGAACTATTTAACCTCCACAAAAAGTTTCAGTTTTAACACTTAAATGATGCAGCTTTAGGAATGATATGAAAGCAAGTAAATGACAAAAAAAATGTATTGCATTCATTCATCCAAATTTTCCCCAGAAGATATGCAAAAATAATGCTTCAAATGATCCTCAAATGATGCCATGCTTAAATCTCCTTCAATAGTAAATGACAAAAAAGATGTATTGCATTCATTCATCCTAATTTTCCCCCAGAGTTACGCAAAAATAATGCCTCAAATGATGCGATGCTTA</genome_strand>
        <mrna_strand>AACTTACATTCCATCCAACCATGGAGGAAGCCTGAAATCATCAATTGAGAAGACAGCCTTCAATTCAGGAGAAGATACCAATTTCAAACGTGGGGCAGAAGGAGCACTGGAGTATTTCCTGCCAACTGGATATATAACCTGTCACATTAGTAAAGTTAATCAAAAGAGAACCGAGAAAGGAAGAAAAAATGACAAGCCAAAAGATGATTAGACAAACAAATTACTCATTTAGTCTCAATGATAAATACAAGCTGAAGAAACAATTAAACCAACAAATGAACTATTTAACCTCCACAAAAAGTTTCAGTTTTAACACTTAAATGATGCAGCTTTAGGAATGATATGAAAGCAAGTAAATGACAAAAAAAATGTATTGCATTCATTCATCCAAATTTTCCCCAGAAGATATGCAAAAATAATGCTTCAAATGATCCTCAAATGATGCCATGCTTAAATCTCCTTCAATAGTAAATGACAAAAAAGATGTATTGCATTCATTCATCCTAATTTTCCCCCAGAGTTACGCAAAAATAATGCCTCAAATGATGCGATGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wbm9nn/sgn_marker_seqs" ref_id="SGN-M359-F" ref_strand="+" ref_description="SGN-M359-F TG37-F [rflp_markers_forward]">
      <seq>tccatccgccatggaggaagcctgaaatcatcaattgagaagacagccttcgattctggagaagataccaattatcaacgaggggcagaaggagcactggaggatttcctgccaactggatatataacctgtcacattactaaagttaatcgaaagagaaccgagaaaggaagaaaaaatgacaagccaaaagatgattagacaaacaaattactcatttagtctcaatgataaatacaagctgaagaaacaattaaaccaacaaatgaactatttaacctccacaaaaagtttcagttttaacacttaaatgatgcagctttacgaatgatatgaaagcaagtaaatgacaaaaaaaatgtattgcattcatgtcatccaaattttccccagaagatatgcaaaaataatgcttcagatgatcctcaaatgatgccatgcttaaatctccttcaatagtaaatgacaaaaaagatgtattgcattcattcatcctaattttcccccagagttacgcaaaaataatgcctcaaatgatgcgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-1tnnv/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="47017" stop="45873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46717" g_stop="46173" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-M359-F" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M359-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46717" e_stop="46173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATCCAACCATGGAGGAAGCCTGAAATCATCAATTGAGAAGACAGCCTTCAATTCAGGAGAAGATACCAATTTCAAACGTGGGGCAGAAGGAGCACTGGAGTATTTCCTGCCAACTGGATATATAACCTGTCACATTAGTAAAGTTAATCAAAAGAGAACCGAGAAAGGAAGAAAAAATGACAAGCCAAAAGATGATTAGACAAACAAATTACTCATTTAGTCTCAATGATAAATACAAGCTGAAGAAACAATTAAACCAACAAATGAACTATTTAACCTCCACAAAAAGTTTCAGTTTTAACACTTAAATGATGCAGCTTTAGGAATGATATGAAAGCAAGTAAATGACAAAAAAAATGTATTGCATTCAT-TCATCCAAATTTTCCCCAGAAGATATGCAAAAATAATGCTTCAAATGATCCTCAAATGATGCCATGCTTAAATCTCCTTCAATAGTAAATGACAAAAAAGATGTATTGCATTCATTCATCCTAATTTTCCCCCAGAGTTACGCAAAAATAATGCCTCAAATGATGCGATGC</genome_strand>
        <mrna_strand>TCCATCC-GCCATGGAGGAAGCCTGAAATCATCAATTGAGAAGACAGCCTTCGATTCTGGAGAAGATACCAATTATCAACGAGGGGCAGAAGGAGCACTGGAGGATTTCCTGCCAACTGGATATATAACCTGTCACATTACTAAAGTTAATCGAAAGAGAACCGAGAAAGGAAGAAAAAATGACAAGCCAAAAGATGATTAGACAAACAAATTACTCATTTAGTCTCAATGATAAATACAAGCTGAAGAAACAATTAAACCAACAAATGAACTATTTAACCTCCACAAAAAGTTTCAGTTTTAACACTTAAATGATGCAGCTTTACGAATGATATGAAAGCAAGTAAATGACAAAAAAAATGTATTGCATTCATGTCATCCAAATTTTCCCCAGAAGATATGCAAAAATAATGCTTCAGATGATCCTCAAATGATGCCATGCTTAAATCTCCTTCAATAGTAAATGACAAAAAAGATGTATTGCATTCATTCATCCTAATTTTCCCCCAGAGTTACGCAAAAATAATGCCTCAAATGATGCGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wbm9nn/sgn_marker_seqs" ref_id="SGN-M7062" ref_strand="+" ref_description="SGN-M7062 C2_At1g75730 [cosii_markers]">
      <seq>aaacagagtaactgatcgttttcgtgtgaaatcttgagagaatcgggtaatcaaaaaccgaaagcttcggtttttccgtttgttaagcagaaatattctcagatagctaaatcgttactatttggattgtaagggaggaaatgaaataattgcgaagaaatcgaagaaagggggagaaagattgagtggtgctggtgaagtttagtccagtatgaacaacattgaaatgggttgtttaaagtctgatgataacgatgagattcattccaatgtttctgttcggaagcgatttaagtttcccaaaaagttttttgatgagtgtaatggagtagatcatgcttctgttcctcggaaagttcgttcagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcattgttgtggccaggcttgtctgcagcagggtcatcttgttccgacatacttgattcttcaccacagtttccaattggcaaatttcctgtctggatcgggagcgctggcactgatcatcaagctcaaaatgcaaaatcttgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-1tnnv/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="87630" stop="91285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87930" g_stop="88054" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88055" i_stop="89082" i_length="1028">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89083" g_stop="89264" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="307" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89265" i_stop="89344" i_length="80">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89345" g_stop="89402" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="365" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89403" i_stop="89780" i_length="378">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89781" g_stop="89902" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="487" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90036" g_stop="90243" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="695" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90329" g_stop="90507" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="874" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90508" i_stop="90582" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90583" g_stop="90637" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="929" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="90638" i_stop="90760" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="90761" g_stop="90830" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="930" r_stop="999" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="90831" i_stop="90906" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="90907" g_stop="90985" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1000" r_stop="1078" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-M7062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1078</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87930" e_stop="88054"/>
          <exon e_start="89083" e_stop="89264"/>
          <exon e_start="89345" e_stop="89402"/>
          <exon e_start="89781" e_stop="89902"/>
          <exon e_start="90036" e_stop="90243"/>
          <exon e_start="90329" e_stop="90507"/>
          <exon e_start="90583" e_stop="90637"/>
          <exon e_start="90761" e_stop="90830"/>
          <exon e_start="90907" e_stop="90985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGGGTAAATCAAAAATTTATTCTTTTTGTTTGTTTGTTTGTTCTTGTTCAGTTATGAGTTGTTGCAACAGATTGTAAGCTGGATTAATTTTTTTTTTCATGATTCTCTGTTGTTTGTTCATGGAAATGACTGAGTTTTTTGTTTTCTGCATTTTGAATTTTTGCGTTTTCGATCTGAAAGAGTGATGAGATTATGCTTTTTCTGAAGAAAATGTACGTTTGATCTATATAATCTGATATGTTGATCTGTTTTAATGGGGTTTTGTTGATGAATAGAGATGGTACTGTAATTTCTCTACATGGGGTTGATTTTTTTTAGGTACTTTGCGTGTGTGTTGTCTTTCTCTTTCTCTCTCTCTCTCTTTCTTTTTGGGGGTTGATGAGTACGAGTGTGACAGACTCACAGTGAGAGAGCGGCTTTATTATGTGAAGAAGAACCCGATTCGTTGTACATAAAGGACCAAATTCAGTTTTCTTCTTCTTCTTCCCTTTTTAACCATTTTTAGAGTTTTTAAATGTTAGTACTGTAAAACCCAAAAGCCTTTAATGTTTCTGTATCGGGTTTTTAGATTCACTACCAAAAGTTCTGAATTTTGGAGGTTCTTGTTTGATGATTAGAGAATTGATTGTAGCTGGGTCTGGAAAAAAAATTGTTTTCAATTCAATTTTGTTGCAGTATTTTTTTTCCAGAAATGGACAAGAATCGGTAATGCTTAAGTGTGAAAGTGAATTTTATTGTTTCGTCTTTGTATTAAAATCAAACGGTTACTAGACAACAAGACCCATCAATGCGTCTATTGTCTGTTTCTGCAAATATATTCTTATTCTTATTCATCTATATGTGGATTTTGGTGTTTGCGAGGTTGAGAAACGCGTGTCGTCTTGTATTCCTCCTTTTCTCCTCTCTTTTTTTCTTTTTTGGTTATCTGTTACAGTTCTTTATCCTTCTTTTTGTTTTGATTTTTCTTGTGATTTCTGCTTTCCACACAAAATTCTCTGATAATATTTCTGGGTTTTGCTTTGAATGCTTAGATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAGGTTTGATATTTTAGCTCAATTAAGTATATTGTAAATAGGTATTGGTCTGTTAAATTCATTAACCCCTTTTGGATTTGCAGTTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAGGTTTGTATTTTTGTGAATCAAATTTGGAAATTACTGACTTGCTTATGTTTGTTATCTTATTTGGAATAGTTATGTGTTAGTTGGAGCCCAGTGCTTGGAAGTGGGTCACTTGTTGCTTTATTTTGTAAATTATAGTAAATTCCTTTTCACCTTTTCTTTCTTTTTAAGCATGAGAAGATTCTGTAAGTTTCTTCGTCTTATTTCGCTTTTTAAACCTTTGGAATCATTAAAAAGTACTTAATCTGCAATTTGGGTGATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACAGTAAGTTCCCATTTCTTACCGCACTCTTCCTTGCCTACAAATATTGTTTGGTTTCTCATGCACCGAGTAATGATAGGTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTA</genome_strand>
        <mrna_strand>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG................................................................................TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA............................................................................GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wbm9nn/sgn_marker_seqs" ref_id="SGN-M6816" ref_strand="+" ref_description="SGN-M6816 C2_At1g47830 [cosii_markers]">
      <seq>tctctggcacctcagttgtgaccctgagggctttttgctggtttttacaaattaaagaatcaaagagattttttcaattgtttctacagctgttttgcctgcagatcttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtactcacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaacgagttggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcatcgagagaatgggagagttggagaagcaggagtgaagaactccgatgctttgctcaagagtcaaaacaaacacttgccttttccttcatcacctgcacttctcttccggctggctgtatttactgcattagacattctgtatcccgttgataccttcatgttgatgtggcctcatttaatacaagatttgttcattcatacatttaaaggtagtttgcaagtttaaatatgaatgtctctatctattcccagtttaaatatgaatatctttatcttttgttaactccaaaaactatattgttgttggaagtaggaaaagggttatttcaatccgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaaaaaaaaacctcgaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-1tnnv/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96976" stop="93167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96676" g_stop="96556" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96555" i_stop="96410" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96409" g_stop="96311" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="220" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96310" i_stop="96229" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96228" g_stop="96178" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="271" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96177" i_stop="94875" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94874" g_stop="94701" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="445" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94700" i_stop="94399" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94398" g_stop="94339" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="505" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94338" i_stop="93811" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93810" g_stop="93468" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="848" r_length="343" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="850" polyA_stop="887"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-M6816" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96676" e_stop="96556"/>
          <exon e_start="96409" e_stop="96311"/>
          <exon e_start="96228" e_stop="96178"/>
          <exon e_start="94874" e_stop="94701"/>
          <exon e_start="94398" e_stop="94339"/>
          <exon e_start="93810" e_stop="93468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAGAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATACGAA</genome_strand>
        <mrna_strand>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAAAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wbm9nn/sgn_marker_seqs" ref_id="SGN-M6816-2" ref_strand="+" ref_description="SGN-M6816-2 C2_At1g47830-2 [cosii_markers]">
      <seq>ggtttttacaaattaaagaatcaaagagatttctccaacttttttcaattgtttctccagctattttgcctgcagatcttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggtccatcggttggtggtgaatagagatcccaaattcaccaactttgttgagttccgtacccacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaatgaattggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcattgagagaatgggagagttggagaagcaggagtgaagatttctgtgctttgctcaagagtcgaaacaaacactttccttttccttcatcatctgcacttctcttccggctggttgtatttactgcattagacattctgtatcctgttgataccttcatgttgatgcggcctcatttaatacaagatttgttcattcatacatttaaaggtagtttgcaagtttaaatatgaatgtctcttatcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-1tnnv/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96908" stop="93256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96609" g_stop="96556" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="92" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96555" i_stop="96410" i_length="146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96409" g_stop="96311" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="191" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96310" i_stop="96229" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96228" g_stop="96178" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="242" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96177" i_stop="94875" i_length="1303">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.658" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94874" g_stop="94701" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="416" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94700" i_stop="94399" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94398" g_stop="94339" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="476" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94338" i_stop="93811" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93810" g_stop="93556" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="731" r_length="255" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-M6816-2" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6816-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96609" e_stop="96556"/>
          <exon e_start="96409" e_stop="96311"/>
          <exon e_start="96228" e_stop="96178"/>
          <exon e_start="94874" e_stop="94701"/>
          <exon e_start="94398" e_stop="94339"/>
          <exon e_start="93810" e_stop="93556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTC-TATCTATTC</genome_strand>
        <mrna_strand>CTTTTTTCAATTGTTTCTCCAGCTATTTTGCCTGCAGATCTTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTCCATCGGTTGGTGGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACCCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAATGAATTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATTGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGATTTCTG-TGCTTTGCTCAAGAGTCGAAACAAACACTTTCCTTTTCCTTCATCATCTGCACTTCTCTTCCGGCTGGTTGTATTTACTGCATTAGACATTCTGTATCCTGTTGATACCTTCATGTTGATGCGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTTATCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wbm9nn/sgn_marker_seqs" ref_id="SGN-M7535" ref_strand="+" ref_description="SGN-M7535 C2_At2g45730 [cosii_markers]">
      <seq>cttcatctaatgcttaaagattgaatttttagcagcaaaaatgtctattgaagaagcagttgatgaggattcgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccattcgggtctctgtttcaagtggagccgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaacggccttgaagaaaaagacgtggatggatctaaagacaaccgtgcgcttgttgataataatactgctcagagtctcactagtgaagatattgacgagatgcgaaagcagggagcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagataagtatagggttaagaaacagaagaaatatgcacctcgagtacttttgaggcgcccctttgcacgaagcatttgtgaggcctacttcaagaaacatcctgaaaaaatcggattcatgcgagtggatgcactatctctactgctctccttggggaatgttactgctaatgcagatgtacttgtagtggacatgctcagtggtattcttactggtgctattgcagaacgacttggaggtactggttatgtgtgcaatacttatcgtggatcatcaccatatcctgtcgatatcacaaggatgtttaatttaagcgatgaaatctgtaaaagaatcgtgcatgcatcactgaccgacctgaattcatttcaaactggagcttcagtgtctgagggtcaggaagaaaccttacctgtcactcattctggtggtctagacgaagttagtgtgccagctgaagatggtggcatggatgtaacacctgagagagtttcttctccaataatcaagcctgttaaatctataaaagcaggtcagaaagcaaccctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-1tnnv/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="120302" stop="125144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120602" g_stop="120775" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120776" i_stop="120929" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120930" g_stop="121057" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="302" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121058" i_stop="122066" i_length="1009">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122067" g_stop="122175" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="411" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122176" i_stop="122613" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122614" g_stop="122695" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="493" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122696" i_stop="122765" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122766" g_stop="122836" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="564" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122837" i_stop="123513" i_length="677">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123514" g_stop="123555" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="606" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123556" i_stop="123837" i_length="282">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123838" g_stop="123962" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="731" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123963" i_stop="124265" i_length="303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124266" g_stop="124359" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="825" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="124360" i_stop="124513" i_length="154">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="124514" g_stop="124580" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="892" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="124581" i_stop="124692" i_length="112">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="124693" g_stop="124844" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="893" r_stop="1044" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-M7535" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1044</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120602" e_stop="120775"/>
          <exon e_start="120930" e_stop="121057"/>
          <exon e_start="122067" e_stop="122175"/>
          <exon e_start="122614" e_stop="122695"/>
          <exon e_start="122766" e_stop="122836"/>
          <exon e_start="123514" e_stop="123555"/>
          <exon e_start="123838" e_stop="123962"/>
          <exon e_start="124266" e_stop="124359"/>
          <exon e_start="124514" e_stop="124580"/>
          <exon e_start="124693" e_stop="124844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAGGTACACTCCTGTCTTTAAATCTCCTTTAGTTATTCTGGAGATAGACGTACTACTTCCTGATTTTTCCTTCATTTATAACTTAATCTTTGGAGAAGGGGAAGGTAGAACGAGATTGGATAATGTTTTCACTGCATTTCTTTGATATAGCTTAGTAAATAAAACTCTAAGATTGGTAATGTAATCAAAATTAAACAAGTTACTTTCATATGCTGCAAAATGTTGCACGTTCGCCCCAGGTGGAAGAAGGCAGTATTTCTTATTTGAGCAATGATCCAGTAACTGTCTATTTGTTGTAACTAGATTATACCACTTCATTCATGTGGAACACTCAGTTTTTCTGTGGATGAGTATGTCCTCGTATTGCTTTTTGATTAGTAAAGCATTTTAGGGCTTGTGGATTGTGTTTCACTTTTTATGATTTTCTTTTTTTAATTCAGGTGATAAGTAAAACATATAATGGTAGTTTTTCATTAATTTCTTCTAAGCACTATTGTTCTTCAAATCATATAATTGATTGTTCTGCATTTAATTTCTGAACTTGAAATCCCCAAGCTATTAGTGGTGATGTCAGATGTAGATAGTCGTAATACTACATTTGGTTTCTAGTTGCAAATCCCATAGTCGTTATCTTCCTCAATCTTTTCTTTAATTTCTAACATACCTCTTGCATTTTTCAGCATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGGGTAATAATATGGTCTTTTCTTGTGTTTGATCAAATATCTTCATCTGTTGTTTCTGGTTATGATTTGTCTTTTTGATGGGAGGGAAAGAAGGATAGACATTGATAACTTATTTTAGCATCAGAAAATCTTGAAATCTGATATATCCTCCTTGATGTTATTTTTCTTTGTGGTTCAGATGCTCACTGTAGTCTAATAACCCAAAGTTTCATATCTTATTCATTTTGCTTTGCATGATTCTGGGTTTACATGGGGGTTGATTTTATATCCTCTTGATTCCATCAGATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAGGTATGTATTTGTTCTTAACTGTAGTTACATTAAGGAAATCAAGGGATATTTGTGAATTGTGACCATTGCTTTATACACATAAAATTTGATCATGCAGCCTATACTAATGGGAAATTGTATCATGTCTGTGGATTATTGCTACTGATACTGATCGTATGTTTGTCATCATGATGTGAACGGCGCTGATGCTTATAGTTGTGAAACCATGTCGAACATGTTATAGACTTATAGTATTGTTAAAGAGTGTTAATTGCTATTTAAGTTAATGACTTTTTAATATTTTCATGACAATGATATTAGCAGGTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAGGTACACTTCCTTTTGCAATGAAATAGAAAAATTACCCAATTAGTGCACAGAGAAAAAAATTGTATATTTCAGTGGATAGCTTTTGTCTAAACTCTAAATATGTTTTACTGCATTCGTACTAACTATAAACTTTGCTGTTTGTGTATGTATCTAGAATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAGGTAAAACCATGTTGTAATGTCAAAAGTTGATCCTTTTTTGGTGTAAATTGTTTCTTCTGTAAATGCGTGCGTGGATGACTTTTAAACTTCTCTCTAAAACATGTTCCTGCAGGAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGA</genome_strand>
        <mrna_strand>CTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG..........................................................................................................................................................................................................................................................................................ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCTAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAG...............................................................................................................................................................................................................................................................................................................GTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAG..........................................................................................................................................................AATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAG................................................................................................................GAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wbm9nn/sgn_marker_seqs" ref_id="SGN-M7535-2" ref_strand="+" ref_description="SGN-M7535-2 C2_At2g45730-2 [cosii_markers]">
      <seq>tgaaaaagcagttgatgaggatttgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccatttgggtctctgtttcaagtggagtcgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaatggccttgaagaaaaagatgtggatggatctaaagacaaccgtgcacttgttgataataatactgctcagagtctcactagtgaagatatcgacgagatgcgaaatcagggggcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagaaaagtatagggttaagaaacagaagaaatatgcacctcgagtactaattgangcgtccctttgcacgaagcatttgtgaggcctacttcaagaaacatcctgaaaaaatcggattcatgcgagtggattcactatctctactactctgcttggggaatgttactgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-1tnnv/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="120350" stop="124193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120650" g_stop="120775" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120776" i_stop="120929" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120930" g_stop="121057" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="254" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121058" i_stop="122066" i_length="1009">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122067" g_stop="122175" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="363" r_length="109" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122176" i_stop="122613" i_length="438">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122614" g_stop="122695" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="445" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122696" i_stop="122765" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122766" g_stop="122836" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="517" r_length="72" r_score="0.915"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122837" i_stop="123513" i_length="677">
            <donor d_prob="0.974" d_score="0.90"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123514" g_stop="123555" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="559" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123556" i_stop="123837" i_length="282">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123838" g_stop="123893" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="615" r_length="56" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-M7535-2" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7535-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120650" e_stop="120775"/>
          <exon e_start="120930" e_stop="121057"/>
          <exon e_start="122067" e_stop="122175"/>
          <exon e_start="122614" e_stop="122695"/>
          <exon e_start="122766" e_stop="122836"/>
          <exon e_start="123514" e_stop="123555"/>
          <exon e_start="123838" e_stop="123893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACT-TTTGAGGCGCCCCTTTGCACGAAGGTACACTCCTGTCTTTAAATCTCCTTTAGTTATTCTGGAGATAGACGTACTACTTCCTGATTTTTCCTTCATTTATAACTTAATCTTTGGAGAAGGGGAAGGTAGAACGAGATTGGATAATGTTTTCACTGCATTTCTTTGATATAGCTTAGTAAATAAAACTCTAAGATTGGTAATGTAATCAAAATTAAACAAGTTACTTTCATATGCTGCAAAATGTTGCACGTTCGCCCCAGGTGGAAGAAGGCAGTATTTCTTATTTGAGCAATGATCCAGTAACTGTCTATTTGTTGTAACTAGATTATACCACTTCATTCATGTGGAACACTCAGTTTTTCTGTGGATGAGTATGTCCTCGTATTGCTTTTTGATTAGTAAAGCATTTTAGGGCTTGTGGATTGTGTTTCACTTTTTATGATTTTCTTTTTTTAATTCAGGTGATAAGTAAAACATATAATGGTAGTTTTTCATTAATTTCTTCTAAGCACTATTGTTCTTCAAATCATATAATTGATTGTTCTGCATTTAATTTCTGAACTTGAAATCCCCAAGCTATTAGTGGTGATGTCAGATGTAGATAGTCGTAATACTACATTTGGTTTCTAGTTGCAAATCCCATAGTCGTTATCTTCCTCAATCTTTTCTTTAATTTCTAACATACCTCTTGCATTTTTCAGCATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGGGTAATAATATGGTCTTTTCTTGTGTTTGATCAAATATCTTCATCTGTTGTTTCTGGTTATGATTTGTCTTTTTGATGGGAGGGAAAGAAGGATAGACATTGATAACTTATTTTAGCATCAGAAAATCTTGAAATCTGATATATCCTCCTTGATGTTATTTTTCTTTGTGGTTCAGATGCTCACTGTAGTCTAATAACCCAAAGTTTCATATCTTATTCATTTTGCTTTGCATGATTCTGGGTTTACATGGGGGTTGATTTTATATCCTCTTGATTCCATCAGATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAA</genome_strand>
        <mrna_strand>TGAAAAAGCAGTTGATGAGGATTTGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTTGGGTCTCTGTTTCAAGTGGAGTCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCCTTGAAGAAAAAGATGTGGATGGATCTAAAGACAACCGTGCACTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATCGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGGGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GAAAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTAATTGANGCGTCCCTTTGCACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG..........................................................................................................................................................................................................................................................................................ATTCATGCGAGTGGATTCACTATCTCTACTACTCTGCTTGGGGAATGTTACTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wbm9nn/sgn_marker_seqs" ref_id="SGN-M1577" ref_strand="+" ref_description="SGN-M1577 T0739 [cos_markers]">
      <seq>gatgatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-1tnnv/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145363" stop="148689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145663" g_stop="145878" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146005" g_stop="146088" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="300" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146388" g_stop="146439" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="352" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148035" g_stop="148191" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="509" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148342" g_stop="148389" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="557" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-M1577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145663" e_stop="145878"/>
          <exon e_start="146005" e_stop="146088"/>
          <exon e_start="146388" e_stop="146439"/>
          <exon e_start="148035" e_stop="148191"/>
          <exon e_start="148342" e_stop="148389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATG</genome_strand>
        <mrna_strand>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wbm9nn/sgn_marker_seqs" ref_id="SGN-M8427" ref_strand="-" ref_description="SGN-M8427 C2_At4g31790 [cosii_markers]">
      <seq>cacactgatattgtcgtccgtgcgaagaagttgggtgtggatgttaaggtgatacacaatgcatctgtgatgaatgctgttggagtgtgtggcttacagctctaccattatggagagacagtgtccataccgttcttcactgagacctggaggccggatagtttctatgagaagattagagaaaaccgaaagcttggactacacacactctgcttgttagatatacgagtgaaagaaccaaccatcgagtctctttgcagaggaaagaagcagtatgaacctcccagatttatgacagttaacacagcaattgagcagctcttagaggttgaagaagcccgtggagaatttgtatacggtgaaaatacaatctgtgttggttttgcacggctggggagtgaagaccaaaaggtggttgctggttcaatgaagcaacttctaacagtcgactttggggcgccattgcattgcttagtcatagttggcaaaacacaccctgttgaagaagaaatgctggaattttatgggctttagaaaacgtatcacaggattgcaatagcaaatactgtattcatgtgttgccttttgtaccattccattctttttggtgactatttatttaggcattaagatgactatgatgtattttttgctttgtaaactcttcccatcttcaagtgattttgacatattttcaagaattcttaaatttaagatattgttggttatttttgtaatctttcactagtattctcaatacattatatcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-1tnnv/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="150390" stop="153190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150690" g_stop="150909" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150910" i_stop="151581" i_length="672">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151582" g_stop="151621" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="260" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="151622" i_stop="151698" i_length="77">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="151699" g_stop="151790" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="352" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="151791" i_stop="152470" i_length="680">
            <donor d_prob="0.485" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="152471" g_stop="152890" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="772" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-M8427" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8427" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="150690" e_stop="150909"/>
          <exon e_start="151582" e_stop="151621"/>
          <exon e_start="151699" e_stop="151790"/>
          <exon e_start="152471" e_stop="152890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTGATATTGTCGTCCGTGCGAAGAAGTTGGGTGTGGATGTTAAGGTGATACACAATGCATCTGTGATGAATGCTGTTGGAGTGTGTGGCTTACAGCTCTACCATTATGGAGAGACAGTGTCCATACCGTTCTTCACTGAGACCTGGAGGCCGGATAGTTTCTATGAGAAGATTAGAGAAAACCGAAAGCTTGGACTACACACACTCTGCTTGTTAGGTAAGTGGCTATTTAACTACTTTGTTTGTTCTTATATTTGTGGTATCCGGGGCAACTTCTGTCACCTGTGACTAAACAACTGAGAAGCCTATTCTGTTCAGTAGCAAGTGTTATCAGGATAATCTTGCCTGTCAAGGTTAGCATATTTGTAGTTGGCATAACATTCTGTTACTCCTACGTTACTGCAGTGATAATACTGTAGGATAGTTTCTGTGGAAAATAGCTTAGCGCAAGGATGATAAAGCTTAACGACTCTCATTCTTGTTACGTCCTCAACCGATATACCATCCCCTTAGTGATTGTTATTTGGCTACATCATGAGTTATGTGTTACCATATATATTTCATATATATATGACTAAAAATTTTCAGTTGCCAGTTTTGCCTCTTTTACCAATCAAAACACTTCAGTTGACGGTCTATCATCTTTTGCTTTTAAGTGGAATATTTTCACCGAGCATACTTCTGGACTAGTTTTCAGAGGATTCATTCTCAACCTTAAACACCATTGTAGTGCTAACAAGGATATACGACATGAAATTAGATGTTTCTAGTTAAGTTTATGTATTACTGGTGACTTGTGAGGTTACAGAAGTACTTGATCGATCTTTTATTGCCTTACTTTTTGTGCAGTCTTCTTCATTCAATTGCATCTTCATCTTCTGATTTGCAGATATACGAGTGAAAGAACCAACCATCGAGTCTCTTTGCAGGTTAGACATCAATGTTGTTTCCATTTATTCTTAGACGAATCACTTGAAATAGTATGTGACCCTGATTTTATTCTCAGAGGAAAGAAGCAGTATGAACCTCCCAGATTTATGACAGTTAACACAGCAATTGAGCAGCTCTTAGAGGTTGAAGAAGCCCGTGGAGAATTTGGTATGTTCACGAATTCATGCTTCTGCTTGACAAAATGGTGGGGGTGGGGCGGGTGACTATTAATAGTCTACTTACCTTAGTTTATCCAAGTTTTCATTTTCAGCTATGTTGCTCGGACTCTCCAAAATTGTTGGGATCCTCCACAAAGCACTACTCTTAGAGTATCTAACATGCACCTGTCGATATTTTTAAAGAGTCTGAGCAACATAGGTTTTCAATAATTCACTGTGTGATCAAGATGTGATTTAGTTAATACAGATTTTGAAAACCTGTCCTTGTGACTTTGTGCTTAATTTGACATAAATCTCATTTACAGTTCAAGCATTCTCTCTTCTTTAGCGAAAAAGGAATCCGTACTGCTTGTGTAAATGTTTGCCAAACATGCCAGTACAATATCCATATTATAATTTCCCTTGACACGAGACATGACTAAGAGAGGTTGCAAGTCATTTTCCTGCTTTTATGAGCTCAATCTGAAGCGAACTAGTATGATAATGGATATGGTTTCGATATGCCTCTAACTTACGCCTTATTTACAATCATGACATACTTCTTGCGTATAATTGACATCTGGTTTTGTTTTAGCCCCGGCTTTGTGGCATTAATAGTTATAAAGAATGTTGTTTGACATTTATAGTGACTAAACGTTTCATTTTGCATTCCCGTTTTTAAAATTACAGTATACGGTGAAAATACAATCTGTGTTGGTTTTGCACGGCTGGGGAGTGAAGACCAAAAGGTGGTTGCTGGTTCAATGAAGCAACTTCTAACAGTCGACTTTGGGGCGCCATTGCATTGCTTAGTCATAGTTGGCAAAACACACCCTGTTGAAGAAGAAATGCTGGAATTTTATGGGCTTTAGAAAACGTATCACAGGATTGCAATAGCAAATACTGTATTCATGTGTTGCCTTTTGTACCATTCCATTCTTTTTGGTGACTATTTATTTAGGCATTAAGATGACTATGATGTATTTTTTGCTTTGTAAACTCTTCCCATCTTCAAGTGATTTTGACATATTTTCAAGAATTCTTAAATTTAAGATATTGTTGGTTATTTTTGTAATCTTTCACTAGTATTCTCAATACATTATATCAAAT</genome_strand>
        <mrna_strand>CACACTGATATTGTCGTCCGTGCGAAGAAGTTGGGTGTGGATGTTAAGGTGATACACAATGCATCTGTGATGAATGCTGTTGGAGTGTGTGGCTTACAGCTCTACCATTATGGAGAGACAGTGTCCATACCGTTCTTCACTGAGACCTGGAGGCCGGATAGTTTCTATGAGAAGATTAGAGAAAACCGAAAGCTTGGACTACACACACTCTGCTTGTTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACGAGTGAAAGAACCAACCATCGAGTCTCTTTGCAG.............................................................................AGGAAAGAAGCAGTATGAACCTCCCAGATTTATGACAGTTAACACAGCAATTGAGCAGCTCTTAGAGGTTGAAGAAGCCCGTGGAGAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACGGTGAAAATACAATCTGTGTTGGTTTTGCACGGCTGGGGAGTGAAGACCAAAAGGTGGTTGCTGGTTCAATGAAGCAACTTCTAACAGTCGACTTTGGGGCGCCATTGCATTGCTTAGTCATAGTTGGCAAAACACACCCTGTTGAAGAAGAAATGCTGGAATTTTATGGGCTTTAGAAAACGTATCACAGGATTGCAATAGCAAATACTGTATTCATGTGTTGCCTTTTGTACCATTCCATTCTTTTTGGTGACTATTTATTTAGGCATTAAGATGACTATGATGTATTTTTTGCTTTGTAAACTCTTCCCATCTTCAAGTGATTTTGACATATTTTCAAGAATTCTTAAATTTAAGATATTGTTGGTTATTTTTGTAATCTTTCACTAGTATTCTCAATACATTATATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>11</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="15320" PGL_stop="11335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15320" e_stop="14951"/>
            <exon e_start="14882" e_stop="14834"/>
            <exon e_start="14748" e_stop="14697"/>
            <exon e_start="12367" e_stop="12204"/>
            <exon e_start="11910" e_stop="11797"/>
            <exon e_start="11370" e_stop="11335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.994" e_score="0.974"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15320" e_stop="14951" e_length="370"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14950" i_stop="14883" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14882" e_stop="14834" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="14833" i_stop="14749" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14748" e_stop="14697" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.863">
            <gDNA_intron_boundary i_start="14696" i_stop="12368" i_length="2329"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12367" e_stop="12204" e_length="164"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.930">
            <gDNA_intron_boundary i_start="12203" i_stop="11911" i_length="293"/>
          </intron>
          <exon e_serial="5" e_score="0.974">
            <gDNA_exon_boundary e_start="11910" e_stop="11797" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.967" acc_prob="0.994">
            <gDNA_intron_boundary i_start="11796" i_stop="11371" i_length="426"/>
          </intron>
          <exon e_serial="6" e_score="0.972">
            <gDNA_exon_boundary e_start="11370" e_stop="11335" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15320" stop="14951"/>
              <exon start="14882" stop="14834"/>
              <exon start="14748" stop="14697"/>
              <exon start="12367" stop="12204"/>
              <exon start="11910" stop="11797"/>
              <exon start="11370" stop="11335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAATGGCTAATGTAATGAAGCCTCTGATGAATTGGCCAAAATGGCATCACTATTTATACGTTCGCGCTTCATTCATCCACTTTGTTCAATCTCAATCTCAATCTCCACTCTTCTCAACCTGCAATGTTCGCCGACTGCCGTCGTTCACGGCATCACCTTCCGGTTACCGGCAAGCTCATTTTCGTTCCGGCGCGGCACTTAAATCACGTGAAAGTCCATTACCGTTAGATCAATCAGAGGGCGACAGCGATTCCGATGAAAAAACAAGGAAGAGTCGTAACGAGAAGAAGCGTGAAGCTCGACGCGCCGTCCGGTGGGCTATGGATTTAGCTAAGTTCTCTGCTCCTCAAATTAAGCGCATTCTCAG : AGTGGCTTCAACGGAGCAAGAGGTATACGAAGCCGTTATGCTGGCCAAG : AGACTAGGTCCTGATGTACGAGAAGGAAAGCGAAGGCAATTCAGTTACATAG : GTAGATTATTGCGAGAAGTTAAGCCTGAATTGATGGATGGTTTAATTCAGGCAACAAAAGATGGAGACCAAACTAAATTTCAGGCTTTATCTGGTTCGGAACTTTCGGCTACCGAAGATGTTGATGAGGAAGTTGAAGAGACTGAATATGAGGATGACGAAGAG : AGTTCTGAGGACAATATTGCTTTAGCCGATAGATGGTTTGATGGCTTGGTCAATAAGGACGTTGACATCTCTAAAGAAATCTATTCTCTAAGTGAGGTTGATTTTGATCGCCAG : GAGTTACGTGGTCTTGTTAGGAATGTACAATCAATA</gDNA_template>
            <first_frame> Q  K  W  L  M  *  *  S  L  *  *  I  G  Q  N  G  I  T  I  Y  T  F  A  L  H  S  S  T  L  F  N  L  N  L  N  L  H  S  S  Q  P  A  M  F  A  D  C  R  R  S  R  H  H  L  P  V  T  G  K  L  I  F  V  P  A  R  H  L  N  H  V  K  V  H  Y  R  *  I  N  Q  R  A  T  A  I  P  M  K  K  Q  G  R  V  V  T  R  R  S  V  K  L  D  A  P  S  G  G  L  W  I  *  L  S  S  L  L  L  K  L  S  A  F  S   : E  W  L  Q  R  S  K  R  Y  T  K  P  L  C  W  P  R :   D  *  V  L  M  Y  E  K  E  S  E  G  N  S  V  T  *  :  V  D  Y  C  E  K  L  S  L  N  *  W  M  V  *  F  R  Q  Q  K  M  E  T  K  L  N  F  R  L  Y  L  V  R  N  F  R  L  P  K  M  L  M  R  K  L  K  R  L  N  M  R  M  T  K  R :   V  L  R  T  I  L  L  *  P  I  D  G  L  M  A  W  S  I  R  T  L  T  S  L  K  K  S  I  L  *  V  R  L  I  L  I  A  R :   S  Y  V  V  L  L  G  M  Y  N  Q   </first_frame>
            <second_frame>  K  N  G  *  C  N  E  A  S  D  E  L  A  K  M  A  S  L  F  I  R  S  R  F  I  H  P  L  C  S  I  S  I  S  I  S  T  L  L  N  L  Q  C  S  P  T  A  V  V  H  G  I  T  F  R  L  P  A  S  S  F  S  F  R  R  G  T  *  I  T  *  K  S  I  T  V  R  S  I  R  G  R  Q  R  F  R  *  K  N  K  E  E  S  *  R  E  E  A  *  S  S  T  R  R  P  V  G  Y  G  F  S  *  V  L  C  S  S  N  *  A  H  S  Q  :  S  G  F  N  G  A  R  G  I  R  S  R  Y  A  G  Q   : E  T  R  S  *  C  T  R  R  K  A  K  A  I  Q  L  H  R :   *  I  I  A  R  S  *  A  *  I  D  G  W  F  N  S  G  N  K  R  W  R  P  N  *  I  S  G  F  I  W  F  G  T  F  G  Y  R  R  C  *  *  G  S  *  R  D  *  I  *  G  *  R  R   : E  F  *  G  Q  Y  C  F  S  R  *  M  V  *  W  L  G  Q  *  G  R  *  H  L  *  R  N  L  F  S  K  *  G  *  F  *  S  P   : G  V  T  W  S  C  *  E  C  T  I  N  </second_frame>
            <third_frame>   K  M  A  N  V  M  K  P  L  M  N  W  P  K  W  H  H  Y  L  Y  V  R  A  S  F  I  H  F  V  Q  S  Q  S  Q  S  P  L  F  S  T  C  N  V  R  R  L  P  S  F  T  A  S  P  S  G  Y  R  Q  A  H  F  R  S  G  A  A  L  K  S  R  E  S  P  L  P  L  D  Q  S  E  G  D  S  D  S  D  E  K  T  R  K  S  R  N  E  K  K  R  E  A  R  R  A  V  R  W  A  M  D  L  A  K  F  S  A  P  Q  I  K  R  I  L  R :   V  A  S  T  E  Q  E  V  Y  E  A  V  M  L  A  K  :  R  L  G  P  D  V  R  E  G  K  R  R  Q  F  S  Y  I   : G  R  L  L  R  E  V  K  P  E  L  M  D  G  L  I  Q  A  T  K  D  G  D  Q  T  K  F  Q  A  L  S  G  S  E  L  S  A  T  E  D  V  D  E  E  V  E  E  T  E  Y  E  D  D  E  E  :  S  S  E  D  N  I  A  L  A  D  R  W  F  D  G  L  V  N  K  D  V  D  I  S  K  E  I  Y  S  L  S  E  V  D  F  D  R  Q  :  E  L  R  G  L  V  R  N  V  Q  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15318" stop="14951"/>
                    <exon start="14882" stop="14834"/>
                    <exon start="14748" stop="14697"/>
                    <exon start="12367" stop="12204"/>
                    <exon start="11910" stop="11797"/>
                    <exon start="11370" stop="11335"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMANVMKPLMNWPKWHHYLYVRASFIHFVQSQSQSPLFSTCNVRRLPSFTASPSGYRQAHFRSGAALKSRESPLPLDQSEGDSDSDEKTRKSRNEKKREARRAVRWAMDLAKFSAPQIKRILRVASTEQEVYEAVMLAKRLGPDVREGKRRQFSYIGRLLREVKPELMDGLIQATKDGDQTKFQALSGSELSATEDVDEEVEETEYEDDEESSEDNIALADRWFDGLVNKDVDISKEIYSLSEVDFDRQELRGLVRNVQSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="30364" PGL_stop="26382"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30364" e_stop="30345"/>
            <exon e_start="29752" e_stop="29659"/>
            <exon e_start="29469" e_stop="29372"/>
            <exon e_start="29126" e_stop="29057"/>
            <exon e_start="28253" e_stop="28150"/>
            <exon e_start="28056" e_stop="27940"/>
            <exon e_start="27803" e_stop="27727"/>
            <exon e_start="27611" e_stop="27567"/>
            <exon e_start="27109" e_stop="26382"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.993" e_score="0.900"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="0.957"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="0.980"/>
          <exon-intron don_prob="0.890" acc_prob="0.999" e_score="0.971"/>
          <exon-intron don_prob="0.399" acc_prob="0.969" e_score="0.981"/>
          <exon-intron don_prob="0.972" acc_prob="0.999" e_score="0.974"/>
          <exon-intron don_prob="0.106" acc_prob="0.990" e_score="0.948"/>
          <exon-intron don_prob="0.962" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="30364" e_stop="30345" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.993">
            <gDNA_intron_boundary i_start="30344" i_stop="29753" i_length="592"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="29752" e_stop="29659" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29658" i_stop="29470" i_length="189"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="29469" e_stop="29372" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="29371" i_stop="29127" i_length="245"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="29126" e_stop="29057" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.890" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29056" i_stop="28254" i_length="803"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="28253" e_stop="28150" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.399" acc_prob="0.969">
            <gDNA_intron_boundary i_start="28149" i_stop="28057" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="0.974">
            <gDNA_exon_boundary e_start="28056" e_stop="27940" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.972" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27939" i_stop="27804" i_length="136"/>
          </intron>
          <exon e_serial="7" e_score="0.948">
            <gDNA_exon_boundary e_start="27803" e_stop="27727" e_length="77"/>
          </exon>
          <intron i_serial="7" don_prob="0.106" acc_prob="0.990">
            <gDNA_intron_boundary i_start="27726" i_stop="27612" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="27611" e_stop="27567" e_length="45"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="0.972">
            <gDNA_intron_boundary i_start="27566" i_stop="27110" i_length="457"/>
          </intron>
          <exon e_serial="9" e_score="0.948">
            <gDNA_exon_boundary e_start="27109" e_stop="26382" e_length="728"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30364" stop="30345"/>
              <exon start="29752" stop="29659"/>
              <exon start="29469" stop="29372"/>
              <exon start="29126" stop="29057"/>
              <exon start="28253" stop="28150"/>
              <exon start="28056" stop="27940"/>
              <exon start="27803" stop="27727"/>
              <exon start="27611" stop="27567"/>
              <exon start="27109" stop="26382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6759" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTGGCTCAGCATACTTCT : GAATTATATCATGAAATGCATGCACTGGACAGATTCGAACAGGATTATCGGAGGAAACTTGAGGAATTAGATTCCCTAAATCTACCTCGAAAAG : GGGAAGGTCTCATGATGTTACAGAGTGAGCTAAAACATCAAAGAAAGATTGCGAGGAGCTTGAAAAAGAAATCTCTTTGGGCTAAGGGTTTGGAGGAG : GTTGTGGAGAAGCTTGTTGACATTGTTACGTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAACG : GATTGACATCTGCTGTCAAGGAGCCTGTGAAGAAACAAGAAAGATTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATT : GCTTCACGGCCCACCGCTCTTCCCCCTAACATGAGGGATGGATTATATAATGGATTGCCTCCTTCCATAAAAACGGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAG : CTCACAATTCCGCAGATTAAAGCAGAAATGGAAAAAACTCTTCACTGGCTTGTCCCAGTCGCTGCAGATACTACGAA : AGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAACACCGG : AAGCGAGTTTGGCAAGAAGAACCCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCTGACAAACAGAAAATGGACTACCATGTCCTTGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATATAATGGGCCCAAGGCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGGGCATTTTGCAGCCAACTTACTATGAATGTTTTGGTAATATGAAATGTAACC</gDNA_template>
            <first_frame> L  W  L  S  I  L  L :   N  Y  I  M  K  C  M  H  W  T  D  S  N  R  I  I  G  G  N  L  R  N  *  I  P  *  I  Y  L  E  K  :  G  K  V  S  *  C  Y  R  V  S  *  N  I  K  E  R  L  R  G  A  *  K  R  N  L  F  G  L  R  V  W  R  R :   L  W  R  S  L  L  T  L  L  R  I  Y  I  K  Q  L  W  K  H  L  G  T  T  :  D  *  H  L  L  S  R  S  L  *  R  N  K  K  D  W  E  *  L  V  W  L  Y  T  M  L  T  *  L  L  K  L  I  T  L :   L  H  G  P  P  L  F  P  L  T  *  G  M  D  Y  I  M  D  C  L  L  P  *  K  R  P  F  V  H  V  C  R  R  L  M  Q  R  K  S :   S  Q  F  R  R  L  K  Q  K  W  K  K  L  F  T  G  L  S  Q  S  L  Q  I  L  R   : K  H  T  K  A  L  D  G  L  E  S  G  P  T  P   : E  A  S  L  A  R  R  T  L  H  K  F  P  S  F  D  C  R  H  S  T  M  L  T  N  R  K  W  T  T  M  S  L  N  *  *  H  G  F  T  V  *  S  A  W  *  D  I  M  G  P  R  L  F  Q  D  D  H  Q  H  A  K  D  L  I  C  R  L  S  *  *  *  T  P  T  Q  K  H  L  R  F  R  F  L  S  K  I  G  L  Y  *  R  K  *  *  N  R  N  V  W  F  L  E  E  A  R  V  R  S  F  C  C  P  R  I  G  K  R  C  G  R  *  V  E  A  W  V  T  P  L  V  P  T  F  N  I  Q  R  L  L  F  W  I  Y  *  M  A  Y  I  S  I  L  S  C  *  R  E  I  S  S  K  K  K  V  H  F  F  V  F  L  I  L  S  S  L  L  L  W  N  *  S  L  F  V  Y  S  L  S  I  I  W  *  L  G  K  M  L  Y  C  S  I  L  L  S  P  K  Y  I  *  I  L  V  E  L  N  V  H  G  *  Q  G  M  M  F  I  W  A  F  C  S  Q  L  T  M  N  V  L  V  I  *  N  V  T </first_frame>
            <second_frame>  S  G  S  A  Y  F   : *  I  I  S  *  N  A  C  T  G  Q  I  R  T  G  L  S  E  E  T  *  G  I  R  F  P  K  S  T  S  K  R :   G  R  S  H  D  V  T  E  *  A  K  T  S  K  K  D  C  E  E  L  E  K  E  I  S  L  G  *  G  F  G  G   : G  C  G  E  A  C  *  H  C  Y  V  Y  T  S  S  N  C  G  S  I  W  G  Q  R :   I  D  I  C  C  Q  G  A  C  E  E  T  R  K  I  G  S  S  W  S  G  F  T  L  C  *  L  S  Y  S  N  *  *  H   : C  F  T  A  H  R  S  S  P  *  H  E  G  W  I  I  *  W  I  A  S  F  H  K  N  G  P  S  F  T  S  A  G  G  *  C  K  G  R   : A  H  N  S  A  D  *  S  R  N  G  K  N  S  S  L  A  C  P  S  R  C  R  Y  Y  E  :  S  T  P  R  L  W  M  G  W  R  V  G  Q  H  R  :  K  R  V  W  Q  E  E  P  S  T  S  F  P  H  S  T  A  D  T  L  P  C  *  Q  T  E  N  G  L  P  C  P  *  T  S  D  M  A  S  P  F  D  Q  P  G  K  I  *  W  A  Q  G  F  S  R  T  I  T  N  T  Q  R  T  *  S  A  D  *  V  D  D  E  H  Q  L  K  N  T  *  D  S  D  F  S  R  R  *  D  F  T  R  E  S  D  E  T  E  M  F  G  S  W  K  K  Q  E  S  G  V  S  V  A  Q  E  S  A  K  G  V  G  A  K  *  K  H  G  *  L  P  S  Y  R  L  S  T  S  K  G  Y  C  F  G  Y  I  R  W  L  T  L  A  F  *  V  A  K  E  R  S  Q  A  K  K  R  F  I  F  L  F  S  *  F  L  A  P  S  S  Y  G  T  K  A  S  L  Y  I  V  S  P  S  Y  G  D  W  E  K  C  Y  T  V  A  Y  Y  Y  R  Q  N  T  F  R  F  *  W  N  *  M  F  M  D  D  R  E  *  C  L  F  G  H  F  A  A  N  L  L  *  M  F  W  *  Y  E  M  *   </second_frame>
            <third_frame>   L  A  Q  H  T  S  :  E  L  Y  H  E  M  H  A  L  D  R  F  E  Q  D  Y  R  R  K  L  E  E  L  D  S  L  N  L  P  R  K   : G  E  G  L  M  M  L  Q  S  E  L  K  H  Q  R  K  I  A  R  S  L  K  K  K  S  L  W  A  K  G  L  E  E  :  V  V  E  K  L  V  D  I  V  T  Y  I  H  Q  A  I  V  E  A  F  G  D  N   : G  L  T  S  A  V  K  E  P  V  K  K  Q  E  R  L  G  V  A  G  L  A  L  H  Y  A  N  L  V  T  Q  I  D  N  I  :  A  S  R  P  T  A  L  P  P  N  M  R  D  G  L  Y  N  G  L  P  P  S  I  K  T  A  L  R  S  R  L  Q  A  V  D  A  K  E  E  :  L  T  I  P  Q  I  K  A  E  M  E  K  T  L  H  W  L  V  P  V  A  A  D  T  T  K :   A  H  Q  G  F  G  W  V  G  E  W  A  N  T  G :   S  E  F  G  K  K  N  P  P  Q  V  S  L  I  R  L  Q  T  L  Y  H  A  D  K  Q  K  M  D  Y  H  V  L  E  L  V  T  W  L  H  R  L  I  S  L  V  R  Y  N  G  P  K  A  F  P  G  R  S  P  T  R  K  G  L  N  L  Q  T  E  L  M  M  N  T  N  S  K  T  P  K  I  Q  I  S  L  E  D  R  T  L  L  E  K  V  M  K  Q  K  C  L  V  P  G  R  S  K  S  Q  E  F  L  L  P  K  N  R  Q  K  V  W  A  L  S  R  S  M  G  N  S  P  R  T  D  F  Q  H  P  K  A  T  V  L  D  I  L  D  G  L  H  *  H  F  E  L  L  K  R  D  L  K  Q  K  K  G  S  F  F  C  F  L  D  S  *  L  P  P  P  M  E  L  K  P  L  C  I  *  S  L  H  H  M  V  I  G  K  N  V  I  L  *  H  I  I  I  A  K  I  H  L  D  S  S  G  I  E  C  S  W  M  T  G  N  D  V  Y  L  G  I  L  Q  P  T  Y  Y  E  C  F  G  N  M  K  C  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30362" stop="30345"/>
                    <exon start="29752" stop="29659"/>
                    <exon start="29469" stop="29372"/>
                    <exon start="29126" stop="29057"/>
                    <exon start="28253" stop="28150"/>
                    <exon start="28056" stop="27940"/>
                    <exon start="27803" stop="27727"/>
                    <exon start="27611" stop="27567"/>
                    <exon start="27109" stop="26662"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1068</number_coding_nucleotides>
                  <number_encoded_amino_acids>356</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAQHTSELYHEMHALDRFEQDYRRKLEELDSLNLPRKGEGLMMLQSELKHQRKIARSLKKKSLWAKGLEEVVEKLVDIVTYIHQAIVEAFGDNGLTSAVKEPVKKQERLGVAGLALHYANLVTQIDNIASRPTALPPNMRDGLYNGLPPSIKTALRSRLQAVDAKEELTIPQIKAEMEKTLHWLVPVAADTTKAHQGFGWVGEWANTGSEFGKKNPPQVSLIRLQTLYHADKQKMDYHVLELVTWLHRLISLVRYNGPKAFPGRSPTRKGLNLQTELMMNTNSKTPKIQISLEDRTLLEKVMKQKCLVPGRSKSQEFLLPKNRQKVWALSRSMGNSPRTDFQHPKATVLDILDGLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="46726" PGL_stop="46170"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46726" e_stop="46170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46726" e_stop="46170" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46726" stop="46170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M359-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46717" stop="46173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M359-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTTACATTCCATCCAACCATGGAGGAAGCCTGAAATCATCAATTGAGAAGACAGCCTTCAATTCAGGAGAAGATACCAATTTCAAACGTGGGGCAGAAGGAGCACTGGAGTATTTCCTGCCAACTGGATATATAACCTGTCACATTAGTAAAGTTAATCAAAAGAGAACCGAGAAAGGAAGAAAAAATGACAAGCCAAAAGATGATTAGACAAACAAATTACTCATTTAGTCTCAATGATAAATACAAGCTGAAGAAACAATTAAACCAACAAATGAACTATTTAACCTCCACAAAAAGTTTCAGTTTTAACACTTAAATGATGCAGCTTTAGGAATGATATGAAAGCAAGTAAATGACAAAAAAAATGTATTGCATTCATTCATCCAAATTTTCCCCAGAAGATATGCAAAAATAATGCTTCAAATGATCCTCAAATGATGCCATGCTTAAATCTCCTTCAATAGTAAATGACAAAAAAGATGTATTGCATTCATTCATCCTAATTTTCCCCCAGAGTTACGCAAAAATAATGCCTCAAATGATGCGATGCTTA</gDNA_template>
            <first_frame> N  L  H  S  I  Q  P  W  R  K  P  E  I  I  N  *  E  D  S  L  Q  F  R  R  R  Y  Q  F  Q  T  W  G  R  R  S  T  G  V  F  P  A  N  W  I  Y  N  L  S  H  *  *  S  *  S  K  E  N  R  E  R  K  K  K  *  Q  A  K  R  *  L  D  K  Q  I  T  H  L  V  S  M  I  N  T  S  *  R  N  N  *  T  N  K  *  T  I  *  P  P  Q  K  V  S  V  L  T  L  K  *  C  S  F  R  N  D  M  K  A  S  K  *  Q  K  K  C  I  A  F  I  H  P  N  F  P  Q  K  I  C  K  N  N  A  S  N  D  P  Q  M  M  P  C  L  N  L  L  Q  *  *  M  T  K  K  M  Y  C  I  H  S  S  *  F  S  P  R  V  T  Q  K  *  C  L  K  *  C  D  A   </first_frame>
            <second_frame>  T  Y  I  P  S  N  H  G  G  S  L  K  S  S  I  E  K  T  A  F  N  S  G  E  D  T  N  F  K  R  G  A  E  G  A  L  E  Y  F  L  P  T  G  Y  I  T  C  H  I  S  K  V  N  Q  K  R  T  E  K  G  R  K  N  D  K  P  K  D  D  *  T  N  K  L  L  I  *  S  Q  *  *  I  Q  A  E  E  T  I  K  P  T  N  E  L  F  N  L  H  K  K  F  Q  F  *  H  L  N  D  A  A  L  G  M  I  *  K  Q  V  N  D  K  K  N  V  L  H  S  F  I  Q  I  F  P  R  R  Y  A  K  I  M  L  Q  M  I  L  K  *  C  H  A  *  I  S  F  N  S  K  *  Q  K  R  C  I  A  F  I  H  P  N  F  P  P  E  L  R  K  N  N  A  S  N  D  A  M  L  </second_frame>
            <third_frame>   L  T  F  H  P  T  M  E  E  A  *  N  H  Q  L  R  R  Q  P  S  I  Q  E  K  I  P  I  S  N  V  G  Q  K  E  H  W  S  I  S  C  Q  L  D  I  *  P  V  T  L  V  K  L  I  K  R  E  P  R  K  E  E  K  M  T  S  Q  K  M  I  R  Q  T  N  Y  S  F  S  L  N  D  K  Y  K  L  K  K  Q  L  N  Q  Q  M  N  Y  L  T  S  T  K  S  F  S  F  N  T  *  M  M  Q  L  *  E  *  Y  E  S  K  *  M  T  K  K  M  Y  C  I  H  S  S  K  F  S  P  E  D  M  Q  K  *  C  F  K  *  S  S  N  D  A  M  L  K  S  P  S  I  V  N  D  K  K  D  V  L  H  S  F  I  L  I  F  P  Q  S  Y  A  K  I  M  P  Q  M  M  R  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46725" stop="46516"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TYIPSNHGGSLKSSIEKTAFNSGEDTNFKRGAEGALEYFLPTGYITCHISKVNQKRTEKGRKNDKPKDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="87930" PGL_stop="90985"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87930" e_stop="88054"/>
            <exon e_start="89083" e_stop="89264"/>
            <exon e_start="89345" e_stop="89402"/>
            <exon e_start="89781" e_stop="89902"/>
            <exon e_start="90036" e_stop="90243"/>
            <exon e_start="90329" e_stop="90507"/>
            <exon e_start="90583" e_stop="90637"/>
            <exon e_start="90761" e_stop="90830"/>
            <exon e_start="90907" e_stop="90985"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.830" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87930" e_stop="88054" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.830" acc_prob="0.994">
            <gDNA_intron_boundary i_start="88055" i_stop="89082" i_length="1028"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89083" e_stop="89264" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89265" i_stop="89344" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89345" e_stop="89402" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.699">
            <gDNA_intron_boundary i_start="89403" i_stop="89780" i_length="378"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89781" e_stop="89902" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.943" acc_prob="0.771">
            <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90036" e_stop="90243" e_length="208"/>
          </exon>
          <intron i_serial="5" don_prob="0.886" acc_prob="0.963">
            <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90329" e_stop="90507" e_length="179"/>
          </exon>
          <intron i_serial="6" don_prob="0.866" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90508" i_stop="90582" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90583" e_stop="90637" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90638" i_stop="90760" i_length="123"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="90761" e_stop="90830" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90831" i_stop="90906" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="90907" e_stop="90985" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87930" stop="88054"/>
              <exon start="89083" stop="89264"/>
              <exon start="89345" stop="89402"/>
              <exon start="89781" stop="89902"/>
              <exon start="90036" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90830"/>
              <exon start="90907" stop="90985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7062" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGG : ATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG : TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG : TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG : ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG : TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA : GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG : GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA : GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTA</gDNA_template>
            <first_frame> K  Q  S  N  *  S  F  S  C  E  I  L  R  E  S  G  N  Q  K  P  K  A  S  V  F  P  F  V  K  Q  K  Y  S  Q  I  A  K  S  L  L  F  G :   L  *  G  R  K  *  N  N  C  E  E  I  E  E  R  G  R  K  I  E  W  C  W  *  S  L  V  Q  Y  E  Q  H  *  N  G  L  F  K  V  *  *  *  R  *  D  S  F  Q  C  F  C  S  E  A  I  *  V  S  Q  K   : V  F  *  *  V  *  W  S  R  S  C  F  C  S  S  E  S  S  F  S :   Y  Q  E  E  N  S  Q  A  H  L  S  T  F  A  D  F  Q  K  G  E  S  H  V  R  W  S  *  N  T  K  E  I  W  Q  Q  V  *  A  *  F   : D  S  L  W  F  K  S  V  Y  K  G  G  A  *  L  S  N  H  Q  R  *  R  G  S  G  *  N  L  V  C  F  G  W  Y  D  P  R  C  *  H  L  E  R  K  Q  N  K  *  S  T  S  *  S  E  I  F  G  L  T  R  T  *  G  F  C  N  R  K  W  S :   C  N  N  R  T  G  H  K  D  K  Q  L  P  I  Q  C  *  S  F  E  A  V  S  R  H  S  C  F  C  W  R  S  C  Q  I  K  I  I  S  *  C  F  P  V  *  Y  I  H  Q  H  R  A  A  R  N  F  I  A  T   : S  C  C  L  S  S  Q  Q  T  K  H  T  Q  G  E  *  E  *  W :   F  I  V  V  A  R  L  V  C  S  R  V  I  L  F  R  H  T  *  F  F  T  T  :  V  S  N  W  Q  I  S  C  L  D  R  E  R  W  H  *  S  S  S  S  K  C  K  I  L  S  </first_frame>
            <second_frame>  N  R  V  T  D  R  F  R  V  K  S  *  E  N  R  V  I  K  N  R  K  L  R  F  F  R  L  L  S  R  N  I  L  R  *  L  N  R  Y  Y  L   : D  C  K  G  G  N  E  I  I  A  K  K  S  K  K  G  G  E  R  L  S  G  A  G  E  V  *  S  S  M  N  N  I  E  M  G  C  L  K  S  D  D  N  D  E  I  H  S  N  V  S  V  R  K  R  F  K  F  P  K  K  :  F  F  D  E  C  N  G  V  D  H  A  S  V  P  R  K  V  R  S   : V  I  K  K  R  I  R  K  L  I  S  P  P  L  P  I  S  K  K  A  N  R  M  S  D  G  A  E  T  L  R  K  Y  G  N  K  S  K  L  N  L  :  T  H  C  G  S  S  R  C  I  K  E  E  L  D  C  P  I  T  K  D  E  E  E  V  A  E  T  L  Y  A  L  A  G  M  I  P  D  V  D  T  L  S  E  S  K  I  N  S  Q  L  P  E  V  K  S  L  D  L  P  E  P  E  A  S  V  I  A  S  G   : V  V  T  T  E  Q  D  I  R  T  N  S  S  Q  F  S  A  E  A  L  K  Q  F  P  D  I  A  V  S  A  G  E  A  A  K  S  K  S  F  H  D  A  S  P  C  D  T  F  I  N  T  E  Q  L  E  I  S  S  Q  Q  :  V  V  A  Y  Q  A  N  K  Q  N  T  H  K  E  N  R  N  N   : G  S  L  L  W  P  G  L  S  A  A  G  S  S  C  S  D  I  L  D  S  S  P  Q :   F  P  I  G  K  F  P  V  W  I  G  S  A  G  T  D  H  Q  A  Q  N  A  K  S  C  L </second_frame>
            <third_frame>   T  E  *  L  I  V  F  V  *  N  L  E  R  I  G  *  S  K  T  E  S  F  G  F  S  V  C  *  A  E  I  F  S  D  S  *  I  V  T  I  W  :  I  V  R  E  E  M  K  *  L  R  R  N  R  R  K  G  E  K  D  *  V  V  L  V  K  F  S  P  V  *  T  T  L  K  W  V  V  *  S  L  M  I  T  M  R  F  I  P  M  F  L  F  G  S  D  L  S  F  P  K  S :   F  L  M  S  V  M  E  *  I  M  L  L  F  L  G  K  F  V  Q  :  L  S  R  R  E  F  A  S  S  S  L  H  L  C  R  F  P  K  R  R  I  A  C  Q  M  E  L  K  H  *  G  N  M  A  T  S  L  S  L  I  * :   L  I  V  V  Q  V  G  V  *  R  R  S  L  I  V  Q  S  P  K  M  K  R  K  W  L  K  P  C  M  L  W  L  V  *  S  Q  M  L  T  P  *  A  K  A  K  *  I  V  N  F  L  K  *  N  L  W  T  Y  Q  N  L  R  L  L  *  S  Q  V  E  :  L  *  Q  Q  N  R  T  *  G  Q  T  A  P  N  S  V  L  K  L  *  S  S  F  Q  T  *  L  F  L  L  E  K  L  P  N  Q  N  H  F  M  M  L  P  R  V  I  H  S  S  T  Q  S  S  *  K  F  H  R  N  K :   L  L  L  I  K  P  T  N  K  T  H  T  R  R  I  G  I  M  :  V  H  C  C  G  Q  A  C  L  Q  Q  G  H  L  V  P  T  Y  L  I  L  H  H   : S  F  Q  L  A  N  F  L  S  G  S  G  A  L  A  L  I  I  K  L  K  M  Q  N  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89163" stop="89264"/>
                    <exon start="89345" stop="89402"/>
                    <exon start="89781" stop="89902"/>
                    <exon start="90036" stop="90243"/>
                    <exon start="90329" stop="90507"/>
                    <exon start="90583" stop="90637"/>
                    <exon start="90761" stop="90830"/>
                    <exon start="90907" stop="90985"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSMNNIEMGCLKSDDNDEIHSNVSVRKRFKFPKKFFDECNGVDHASVPRKVRSVIKKRIRKLISPPLPISKKANRMSDGAETLRKYGNKSKLNLTHCGSSRCIKEELDCPITKDEEEVAETLYALAGMIPDVDTLSESKINSQLPEVKSLDLPEPEASVIASGVVTTEQDIRTNSSQFSAEALKQFPDIAVSAGEAAKSKSFHDASPCDTFINTEQLEISSQQVVAYQANKQNTHKENRNNGSLLWPGLSAAGSSCSDILDSSPQFPIGKFPVWIGSAGTDHQAQNAKSCL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="96676" PGL_stop="93468"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96676" e_stop="96556"/>
            <exon e_start="96409" e_stop="96311"/>
            <exon e_start="96228" e_stop="96178"/>
            <exon e_start="94874" e_stop="94701"/>
            <exon e_start="94398" e_stop="94339"/>
            <exon e_start="93810" e_stop="93468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.658" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96676" e_stop="96556" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.799">
            <gDNA_intron_boundary i_start="96555" i_stop="96410" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96409" e_stop="96311" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.993">
            <gDNA_intron_boundary i_start="96310" i_stop="96229" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96228" e_stop="96178" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.658">
            <gDNA_intron_boundary i_start="96177" i_stop="94875" i_length="1303"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94874" e_stop="94701" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94700" i_stop="94399" i_length="302"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94398" e_stop="94339" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.713" acc_prob="0.993">
            <gDNA_intron_boundary i_start="94338" i_stop="93811" i_length="528"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="93810" e_stop="93468" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96676" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94701"/>
              <exon start="94398" stop="94339"/>
              <exon start="93810" stop="93468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96609" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94701"/>
              <exon start="94398" stop="94339"/>
              <exon start="93810" stop="93556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6816-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG : ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG : GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG : TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG : GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG : GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAGAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATACGAA</gDNA_template>
            <first_frame> S  L  A  P  Q  L  *  P  *  G  L  F  A  G  F  Y  K  L  K  N  Q  R  D  F  F  N  C  F  Y  S  C  F  A  C  R  S  S  E  Q  N   : D  P  F  Y  I  A  S  E  Q  A  R  K  D  S  F  G  *  V  L  Y  T  S  *  G  I  R  E  A  Q  G  G  I  *   : G  S  *  V  G  C  E  *  R  S  Q  I  H  Q  L  C  *   : V  P  Y  S  Q  G  N  I  Q  K  I  C  R  I  I  F  L  T  L  C  *  Y  H  R  Q  R  V  G  L  F  R  V  H  P  L  V  C  G  D  F  G  S  L  L  Q  Q  C  L  *  A  G  F  G  F  Q  F  P  Q   : G  I  S  D  I  R  *  V  Y  S  C  W  G  A  P  G  N  K  *  E   : G  N  H  R  E  N  G  R  V  G  E  A  G  V  K  N  S  D  A  L  L  K  S  Q  N  K  H  L  P  F  P  S  S  P  A  L  L  F  R  L  A  V  F  T  A  L  D  I  L  Y  P  V  D  T  F  M  L  M  W  P  H  L  I  Q  D  L  F  I  H  T  F  K  G  S  L  Q  V  *  I  *  M  S  L  S  I  P  S  L  N  M  N  I  F  I  F  C  *  L  Q  K  L  Y  C  C  W  K  *  E  K  G  Y  F  N  T   </first_frame>
            <second_frame>  L  W  H  L  S  C  D  P  E  G  F  L  L  V  F  T  N  *  R  I  K  E  I  F  S  I  V  S  T  A  V  L  P  A  D  L  L  N  K  M  :  I  R  F  I  L  L  Q  N  R  Q  G  K  T  R  L  A  K  Y  Y  I  P  L  E  E  S  E  K  H  K  V  E  Y  E  :  V  H  R  L  V  V  N  R  D  P  K  F  T  N  F  V  E  :  F  R  T  H  K  V  I  Y  R  R  Y  A  G  L  F  F  S  L  C  V  D  I  T  D  N  E  L  A  Y  L  E  S  I  H  L  F  V  E  I  L  D  H  F  F  S  N  V  C  E  L  D  L  V  F  N  F  H  K  :  V  Y  L  I  L  D  E  F  I  L  A  G  E  L  Q  E  T  S  K  R  :  A  I  I  E  R  M  G  E  L  E  K  Q  E  *  R  T  P  M  L  C  S  R  V  K  T  N  T  C  L  F  L  H  H  L  H  F  S  S  G  W  L  Y  L  L  H  *  T  F  C  I  P  L  I  P  S  C  *  C  G  L  I  *  Y  K  I  C  S  F  I  H  L  K  V  V  C  K  F  K  Y  E  C  L  Y  L  F  P  V  *  I  *  I  S  L  S  F  V  N  S  R  N  Y  I  V  V  G  S  R  K  R  V  I  S  I  R  </second_frame>
            <third_frame>   S  G  T  S  V  V  T  L  R  A  F  C  W  F  L  Q  I  K  E  S  K  R  F  F  Q  L  F  L  Q  L  F  C  L  Q  I  F  *  T  K  * :   S  V  L  Y  C  F  R  T  G  K  E  R  L  V  W  L  S  I  I  Y  L  L  R  N  P  R  S  T  R  W  N  M  R :   F  I  G  W  L  *  I  E  I  P  N  S  P  T  L  L  S :   S  V  L  T  R  *  Y  T  E  D  M  Q  D  Y  F  S  H  F  V  L  I  S  Q  T  T  S  W  L  I  *  S  P  S  T  C  L  W  R  F  W  I  T  S  S  A  M  S  V  S  W  I  W  F  S  I  S  T  R :   Y  I  *  Y  *  M  S  L  F  L  L  G  S  S  R  K  Q  V  R  G :   Q  S  S  R  E  W  E  S  W  R  S  R  S  E  E  L  R  C  F  A  Q  E  S  K  Q  T  L  A  F  S  F  I  T  C  T  S  L  P  A  G  C  I  Y  C  I  R  H  S  V  S  R  *  Y  L  H  V  D  V  A  S  F  N  T  R  F  V  H  S  Y  I  *  R  *  F  A  S  L  N  M  N  V  S  I  Y  S  Q  F  K  Y  E  Y  L  Y  L  L  L  T  P  E  T  I  L  L  L  E  V  G  K  G  L  F  Q  Y  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96621" stop="96556"/>
                    <exon start="96409" stop="96311"/>
                    <exon start="96228" stop="96178"/>
                    <exon start="94874" stop="94701"/>
                    <exon start="94398" stop="94339"/>
                    <exon start="93810" stop="93769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIKEIFSIVSTAVLPADLLNKMIRFILLQNRQGKTRLAKYYIPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="120602" PGL_stop="124844"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120602" e_stop="120775"/>
            <exon e_start="120930" e_stop="121057"/>
            <exon e_start="122067" e_stop="122175"/>
            <exon e_start="122614" e_stop="122695"/>
            <exon e_start="122766" e_stop="122836"/>
            <exon e_start="123514" e_stop="123555"/>
            <exon e_start="123838" e_stop="123962"/>
            <exon e_start="124266" e_stop="124359"/>
            <exon e_start="124514" e_stop="124580"/>
            <exon e_start="124693" e_stop="124844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="0.992"/>
          <exon-intron don_prob="0.875" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.729" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120602" e_stop="120775" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="120776" i_stop="120929" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120930" e_stop="121057" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="121058" i_stop="122066" i_length="1009"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="122067" e_stop="122175" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122176" i_stop="122613" i_length="438"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122614" e_stop="122695" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.615" acc_prob="0.999">
            <gDNA_intron_boundary i_start="122696" i_stop="122765" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122766" e_stop="122836" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.976">
            <gDNA_intron_boundary i_start="122837" i_stop="123513" i_length="677"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123514" e_stop="123555" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.917">
            <gDNA_intron_boundary i_start="123556" i_stop="123837" i_length="282"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="123838" e_stop="123962" e_length="125"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="123963" i_stop="124265" i_length="303"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="124266" e_stop="124359" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.875" acc_prob="0.990">
            <gDNA_intron_boundary i_start="124360" i_stop="124513" i_length="154"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="124514" e_stop="124580" e_length="67"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.729">
            <gDNA_intron_boundary i_start="124581" i_stop="124692" i_length="112"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="124693" e_stop="124844" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120602" stop="120775"/>
              <exon start="120930" stop="121057"/>
              <exon start="122067" stop="122175"/>
              <exon start="122614" stop="122695"/>
              <exon start="122766" stop="122836"/>
              <exon start="123514" stop="123555"/>
              <exon start="123838" stop="123962"/>
              <exon start="124266" stop="124359"/>
              <exon start="124514" stop="124580"/>
              <exon start="124693" stop="124844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120650" stop="120775"/>
              <exon start="120930" stop="121057"/>
              <exon start="122067" stop="122175"/>
              <exon start="122614" stop="122695"/>
              <exon start="122766" stop="122836"/>
              <exon start="123514" stop="123555"/>
              <exon start="123838" stop="123893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7535-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC : GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG : GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA : GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA : GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAG : CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG : ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAG : GTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAG : AATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAG : GAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGA</gDNA_template>
            <first_frame> L  H  L  M  L  K  D  *  I  F  S  S  K  N  V  Y  *  R  S  S  *  *  G  F  E  A  K  S  *  *  *  I  N  L  *  R  L  Q  C  I  A  *  H  Q  *  W  R  P  F  S  F  F  S  S  Y  C  C  L  :  D  I  E  N  W  E  *  E  V  F  S  S  A  S  Y  R  L  S  I  R  V  S  V  S  S  G  A  G  K  R  R  N  L  F  D  S  F  C  *  E  C  R  R :   *  R  P  *  R  K  R  R  G  W  I  *  R  Q  P  C  A  C  *  *  *  Y  C  S  E  S  H  *  *  R  Y  *  R  D  A  K  :  A  G  S  K  R  G  *  N  S  *  S  T  H  C  K  Q  C  N  F  *  E  E  D  I  I  F  T   : R  *  V  *  G  *  E  T  E  E  I  C  T  S  S  T  F  E  A  P  L  C  T  K  :  H  L  *  G  L  L  Q  E  T  S  *  K  N  R  :  I  H  A  S  G  C  T  I  S  T  A  L  L  G  E  C  Y  C  K  C  R  C  T  C  S  G  H  A  Q  W  Y  S  Y  W  C  Y  C  R  T  T  W  R :   Y  W  L  C  V  Q  Y  L  S  W  I  I  T  I  S  C  R  Y  H  K  D  V  *  F  K  R  *  N  L  *  K  :  N  R  A  C  I  T  D  R  P  E  F  I  S  N  W  S  F  S  V  *  G  S   : G  R  N  L  T  C  H  S  F  W  W  S  R  R  S  *  C  A  S  *  R  W  W  H  G  C  N  T  *  E  S  F  F  S  N  N  Q  A  C  *  I  Y  K  S  R  S  E  S  N  P  R </first_frame>
            <second_frame>  F  I  *  C  L  K  I  E  F  L  A  A  K  M  S  I  E  E  A  V  D  E  D  S  K  Q  N  H  N  S  R  L  T  Y  E  G  C  N  V  L  L  D  I  N  D  G  D  R  L  V  F  S  R  L  T  A  A  S :   T  L  K  I  G  N  K  K  C  S  L  Q  P  L  I  G  C  P  F  G  S  L  F  Q  V  E  P  G  K  E  G  T  F  L  T  R  F  V  E  N  A  E   : G  N  G  L  E  E  K  D  V  D  G  S  K  D  N  R  A  L  V  D  N  N  T  A  Q  S  L  T  S  E  D  I  D  E  M  R  K :   Q  G  A  K  G  D  E  I  V  E  A  L  I  A  N  S  A  T  F  E  K  K  T  L  F  S  Q  :  D  K  Y  R  V  K  K  Q  K  K  Y  A  P  R  V  L  L  R  R  P  F  A  R  S :   I  C  E  A  Y  F  K  K  H  P  E  K  I  G :   F  M  R  V  D  A  L  S  L  L  L  S  L  G  N  V  T  A  N  A  D  V  L  V  V  D  M  L  S  G  I  L  T  G  A  I  A  E  R  L  G   : G  T  G  Y  V  C  N  T  Y  R  G  S  S  P  Y  P  V  D  I  T  R  M  F  N  L  S  D  E  I  C  K  R :   I  V  H  A  S  L  T  D  L  N  S  F  Q  T  G  A  S  V  S  E  G  Q  :  E  E  T  L  P  V  T  H  S  G  G  L  D  E  V  S  V  P  A  E  D  G  G  M  D  V  T  P  E  R  V  S  S  P  I  I  K  P  V  K  S  I  K  A  G  Q  K  A  T  L   </second_frame>
            <third_frame>   S  S  N  A  *  R  L  N  F  *  Q  Q  K  C  L  L  K  K  Q  L  M  R  I  R  S  K  I  I  I  V  D  *  L  M  K  V  A  M  Y  C  L  T  S  M  M  A  T  V  *  F  F  L  V  L  L  L  P   : R  H  *  K  L  G  I  R  S  V  L  F  S  L  L  *  V  V  H  S  G  L  C  F  K  W  S  R  E  K  K  E  P  F  *  L  V  L  L  R  M  Q  K  :  V  T  A  L  K  K  K  T  W  M  D  L  K  T  T  V  R  L  L  I  I  I  L  L  R  V  S  L  V  K  I  L  T  R  C  E   : S  R  E  Q  K  G  M  K  *  L  K  H  S  L  Q  T  V  Q  L  L  R  R  R  H  Y  F  H  K :   I  S  I  G  L  R  N  R  R  N  M  H  L  E  Y  F  *  G  A  P  L  H  E   : A  F  V  R  P  T  S  R  N  I  L  K  K  S   : D  S  C  E  W  M  H  Y  L  Y  C  S  P  W  G  M  L  L  Q  M  Q  M  Y  L  *  W  T  C  S  V  V  F  L  L  V  L  L  Q  N  D  L  E  :  V  L  V  M  C  A  I  L  I  V  D  H  H  H  I  L  S  I  S  Q  G  C  L  I  *  A  M  K  S  V  K   : E  S  C  M  H  H  *  P  T  *  I  H  F  K  L  E  L  Q  C  L  R  V  R :   K  K  P  Y  L  S  L  I  L  V  V  *  T  K  L  V  C  Q  L  K  M  V  A  W  M  *  H  L  R  E  F  L  L  Q  *  S  S  L  L  N  L  *  K  Q  V  R  K  Q  P  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120612" stop="120775"/>
                    <exon start="120930" stop="121057"/>
                    <exon start="122067" stop="122175"/>
                    <exon start="122614" stop="122695"/>
                    <exon start="122766" stop="122836"/>
                    <exon start="123514" stop="123555"/>
                    <exon start="123838" stop="123962"/>
                    <exon start="124266" stop="124359"/>
                    <exon start="124514" stop="124580"/>
                    <exon start="124693" stop="124842"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLKIEFLAAKMSIEEAVDEDSKQNHNSRLTYEGCNVLLDINDGDRLVFSRLTAASTLKIGNKKCSLQPLIGCPFGSLFQVEPGKEGTFLTRFVENAEGNGLEEKDVDGSKDNRALVDNNTAQSLTSEDIDEMRKQGAKGDEIVEALIANSATFEKKTLFSQDKYRVKKQKKYAPRVLLRRPFARSICEAYFKKHPEKIGFMRVDALSLLLSLGNVTANADVLVVDMLSGILTGAIAERLGGTGYVCNTYRGSSPYPVDITRMFNLSDEICKRIVHASLTDLNSFQTGASVSEGQEETLPVTHSGGLDEVSVPAEDGGMDVTPERVSSPIIKPVKSIKAGQKATL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="145663" PGL_stop="148389"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="145663" e_stop="145878"/>
            <exon e_start="146005" e_stop="146088"/>
            <exon e_start="146388" e_stop="146439"/>
            <exon e_start="148035" e_stop="148191"/>
            <exon e_start="148342" e_stop="148389"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.648" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="145663" e_stop="145878" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="146005" e_stop="146088" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="146388" e_stop="146439" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.945">
            <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="148035" e_stop="148191" e_length="157"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.648">
            <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="148342" e_stop="148389" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145663" stop="145878"/>
              <exon start="146005" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148191"/>
              <exon start="148342" stop="148389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG : GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT : GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC : AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG : GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATG</gDNA_template>
            <first_frame> D  D  S  K  I  H  S  *  T  K  H  *  K  K  R  E  E  M  L  T  A  P  S  L  S  R  F  K  S  P  F  I  S  S  P  L  K  L  P  T  L  S  S  S  F  F  T  Q  K  F  H  Q  T  C  R  R  R  N  S  Y  P  C  I  K  A  V  D  L  D  Q  N  T  :  V  I  A  I  T  V  G  V  L  S  V  A  I  G  V  G  I  P  V  F  Y  E  T  Q  I  D  N  A  :  A  K  R  E  N  T  Q  P  C  F  P  C  T  G  T  G  A   : Q  K  C  R  F  C  M  G  T  G  S  V  T  V  E  L  G  G  G  E  T  E  V  S  R  C  I  N  C  D  G  A  G  G  L  T  C  T  T  C  Q  G  S  G  I  Q  P  R  Y  L  D  R  R :   E  F  K  D  D  D  *  I  W  K  N  T  Q  H  G   </first_frame>
            <second_frame>  M  I  A  K  S  I  A  K  L  N  I  E  R  K  G  R  K  C  *  Q  H  L  H  F  P  A  L  S  L  H  L  S  A  H  L  L  S  F  L  L  F  L  L  L  F  S  L  R  N  F  I  K  H  V  V  G  E  I  R  T  H  V  L  K  L  W  I  L  I  K  T  R :   *  *  Q  L  Q  L  G  C  S  V  L  L  L  E  L  E  F  Q  F  F  M  R  P  K  L  I  M  L :   Q  K  E  R  T  L  S  P  A  S  P  A  L  A  L  V  L  :  R  N  A  D  F  A  W  V  L  A  V  *  R  W  S  L  E  G  V  R  Q  K  S  L  G  A  S  I  V  T  V  L  V  V  *  L  A  Q  H  V  K  A  V  A  F  N  L  G  T  L  I  A   : G  N  S  R  T  M  I  R  Y  G  R  I  L  S  M  D  </second_frame>
            <third_frame>   *  *  Q  N  P  *  L  N  *  T  L  K  E  K  G  G  N  V  N  S  T  F  T  F  P  L  *  V  S  I  Y  Q  L  T  S  *  A  S  Y  S  F  F  F  F  F  H  S  E  I  S  S  N  M  S  *  A  K  F  V  P  M  Y  *  S  C  G  S  *  S  K  H   : G  D  S  N  Y  S  W  G  A  Q  C  C  Y  W  S  W  N  S  S  F  L  *  D  P  N  *  *  C   : C  K  K  R  E  H  S  A  L  L  P  L  H  W  H  W  C  S :   E  M  Q  I  L  H  G  Y  W  Q  C  D  G  G  A  W  R  G  *  D  R  S  L  S  V  H  Q  L  *  R  C  W  W  F  D  L  H  N  M  S  R  Q  W  H  S  T  S  V  P  *  S  Q  :  G  I  Q  G  R  *  L  D  M  E  E  Y  S  A  W  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145699" stop="145878"/>
                    <exon start="146005" stop="146088"/>
                    <exon start="146388" stop="146439"/>
                    <exon start="148035" stop="148191"/>
                    <exon start="148342" stop="148363"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKREEMLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNSYPCIKAVDLDQNTVIAITVGVLSVAIGVGIPVFYETQIDNAAKRENTQPCFPCTGTGAQKCRFCMGTGSVTVELGGGETEVSRCINCDGAGGLTCTTCQGSGIQPRYLDRREFKDDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="150690" PGL_stop="152890"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="150690" e_stop="150909"/>
            <exon e_start="151582" e_stop="151621"/>
            <exon e_start="151699" e_stop="151790"/>
            <exon e_start="152471" e_stop="152890"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.485" acc_prob="0.864" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="150690" e_stop="150909" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="150910" i_stop="151581" i_length="672"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="151582" e_stop="151621" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.922">
            <gDNA_intron_boundary i_start="151622" i_stop="151698" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="151699" e_stop="151790" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.485" acc_prob="0.864">
            <gDNA_intron_boundary i_start="151791" i_stop="152470" i_length="680"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="152471" e_stop="152890" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150690" stop="150909"/>
              <exon start="151582" stop="151621"/>
              <exon start="151699" stop="151790"/>
              <exon start="152471" stop="152890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8427" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACACTGATATTGTCGTCCGTGCGAAGAAGTTGGGTGTGGATGTTAAGGTGATACACAATGCATCTGTGATGAATGCTGTTGGAGTGTGTGGCTTACAGCTCTACCATTATGGAGAGACAGTGTCCATACCGTTCTTCACTGAGACCTGGAGGCCGGATAGTTTCTATGAGAAGATTAGAGAAAACCGAAAGCTTGGACTACACACACTCTGCTTGTTAG : ATATACGAGTGAAAGAACCAACCATCGAGTCTCTTTGCAG : AGGAAAGAAGCAGTATGAACCTCCCAGATTTATGACAGTTAACACAGCAATTGAGCAGCTCTTAGAGGTTGAAGAAGCCCGTGGAGAATTTG : TATACGGTGAAAATACAATCTGTGTTGGTTTTGCACGGCTGGGGAGTGAAGACCAAAAGGTGGTTGCTGGTTCAATGAAGCAACTTCTAACAGTCGACTTTGGGGCGCCATTGCATTGCTTAGTCATAGTTGGCAAAACACACCCTGTTGAAGAAGAAATGCTGGAATTTTATGGGCTTTAGAAAACGTATCACAGGATTGCAATAGCAAATACTGTATTCATGTGTTGCCTTTTGTACCATTCCATTCTTTTTGGTGACTATTTATTTAGGCATTAAGATGACTATGATGTATTTTTTGCTTTGTAAACTCTTCCCATCTTCAAGTGATTTTGACATATTTTCAAGAATTCTTAAATTTAAGATATTGTTGGTTATTTTTGTAATCTTTCACTAGTATTCTCAATACATTATATCAAAT</gDNA_template>
            <first_frame> H  T  D  I  V  V  R  A  K  K  L  G  V  D  V  K  V  I  H  N  A  S  V  M  N  A  V  G  V  C  G  L  Q  L  Y  H  Y  G  E  T  V  S  I  P  F  F  T  E  T  W  R  P  D  S  F  Y  E  K  I  R  E  N  R  K  L  G  L  H  T  L  C  L  L   : D  I  R  V  K  E  P  T  I  E  S  L  C  R :   G  K  K  Q  Y  E  P  P  R  F  M  T  V  N  T  A  I  E  Q  L  L  E  V  E  E  A  R  G  E  F   : V  Y  G  E  N  T  I  C  V  G  F  A  R  L  G  S  E  D  Q  K  V  V  A  G  S  M  K  Q  L  L  T  V  D  F  G  A  P  L  H  C  L  V  I  V  G  K  T  H  P  V  E  E  E  M  L  E  F  Y  G  L  *  K  T  Y  H  R  I  A  I  A  N  T  V  F  M  C  C  L  L  Y  H  S  I  L  F  G  D  Y  L  F  R  H  *  D  D  Y  D  V  F  F  A  L  *  T  L  P  I  F  K  *  F  *  H  I  F  K  N  S  *  I  *  D  I  V  G  Y  F  C  N  L  S  L  V  F  S  I  H  Y  I  K  </first_frame>
            <second_frame>  T  L  I  L  S  S  V  R  R  S  W  V  W  M  L  R  *  Y  T  M  H  L  *  *  M  L  L  E  C  V  A  Y  S  S  T  I  M  E  R  Q  C  P  Y  R  S  S  L  R  P  G  G  R  I  V  S  M  R  R  L  E  K  T  E  S  L  D  Y  T  H  S  A  C  *  :  I  Y  E  *  K  N  Q  P  S  S  L  F  A   : E  E  R  S  S  M  N  L  P  D  L  *  Q  L  T  Q  Q  L  S  S  S  *  R  L  K  K  P  V  E  N  L  :  Y  T  V  K  I  Q  S  V  L  V  L  H  G  W  G  V  K  T  K  R  W  L  L  V  Q  *  S  N  F  *  Q  S  T  L  G  R  H  C  I  A  *  S  *  L  A  K  H  T  L  L  K  K  K  C  W  N  F  M  G  F  R  K  R  I  T  G  L  Q  *  Q  I  L  Y  S  C  V  A  F  C  T  I  P  F  F  L  V  T  I  Y  L  G  I  K  M  T  M  M  Y  F  L  L  C  K  L  F  P  S  S  S  D  F  D  I  F  S  R  I  L  K  F  K  I  L  L  V  I  F  V  I  F  H  *  Y  S  Q  Y  I  I  S  N </second_frame>
            <third_frame>   H  *  Y  C  R  P  C  E  E  V  G  C  G  C  *  G  D  T  Q  C  I  C  D  E  C  C  W  S  V  W  L  T  A  L  P  L  W  R  D  S  V  H  T  V  L  H  *  D  L  E  A  G  *  F  L  *  E  D  *  R  K  P  K  A  W  T  T  H  T  L  L  V  R :   Y  T  S  E  R  T  N  H  R  V  S  L  Q  :  R  K  E  A  V  *  T  S  Q  I  Y  D  S  *  H  S  N  *  A  A  L  R  G  *  R  S  P  W  R  I  C :   I  R  *  K  Y  N  L  C  W  F  C  T  A  G  E  *  R  P  K  G  G  C  W  F  N  E  A  T  S  N  S  R  L  W  G  A  I  A  L  L  S  H  S  W  Q  N  T  P  C  *  R  R  N  A  G  I  L  W  A  L  E  N  V  S  Q  D  C  N  S  K  Y  C  I  H  V  L  P  F  V  P  F  H  S  F  W  *  L  F  I  *  A  L  R  *  L  *  C  I  F  C  F  V  N  S  S  H  L  Q  V  I  L  T  Y  F  Q  E  F  L  N  L  R  Y  C  W  L  F  L  *  S  F  T  S  I  L  N  T  L  Y  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="150690" stop="150909"/>
                    <exon start="151582" stop="151621"/>
                    <exon start="151699" stop="151790"/>
                    <exon start="152471" stop="152652"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTDIVVRAKKLGVDVKVIHNASVMNAVGVCGLQLYHYGETVSIPFFTETWRPDSFYEKIRENRKLGLHTLCLLDIRVKEPTIESLCRGKKQYEPPRFMTVNTAIEQLLEVEEARGEFVYGENTICVGFARLGSEDQKVVAGSMKQLLTVDFGAPLHCLVIVGKTHPVEEEMLEFYGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 72 chains have been computed
$ 
$ memory statistics:
$ 23832 bytes spliced alignments in total
$ 11 spliced alignments have been stored
$ 2166 bytes was the average size of a spliced alignment
$ 15104 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1888 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 73 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-26 18:37:00
-->
