<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-17 21:49:32"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333078" ref_strand="+" ref_description="SGN-U333078        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ggcaccagattctttctactgtagatcaacatccactgttcaatgccataagccatgaacttttgagtgaaacactagtactggagttgtgatgttaaaaacattgaaaattttgcataatgtttgcttgatagatgacattgggattgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="11288" stop="10542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10994" g_stop="10842" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="153" polyA_stop="165"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-U333078" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10994" e_stop="10842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGAGTATTCTTTCTACTGTAGATCAACATCCACTGTTCAATGCCATAAGCCATGAACTTTTGAGTGAAACACTAGTACTGGAGTTGTGATGTTAAAAACATTGAAAATTTTGCATAATGTTTGCTTGATAGATGACATTGGGATTGAGA</genome_strand>
        <mrna_strand>GGCACCAG-ATTCTTTCTACTGTAGATCAACATCCACTGTTCAATGCCATAAGCCATGAACTTTTGAGTGAAACACTAGTACTGGAGTTGTGATGTTAAAAACATTGAAAATTTTGCATAATGTTTGCTTGATAGATGACATTGGGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332800" ref_strand="+" ref_description="SGN-U332800        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:12546979-12548968 FORWARD | Aliases: None(evalue: 2e-40, score=152) genbank/nr: gi|50922789|ref|XP_471755.1| OSJNBa0024J22.22 [Oryza sativa (japonica cultivar-group)] >gi|38347194|emb|CAD37109.2| OSJNBa0024J22.22 [Oryza sativa (japonica cultivar-group)] >gi|38567940|emb|CAE03985.3| OSJNBa0033H08.17 [Oryza sativa (japonica cultivar-group)] (evalue: 2e-39, score=160)">
      <seq>caaaaatggctaatgtaatgaagcctctgatgaattggccaaaatggcatcactatttatacgttcgcgcttcattcatccactttgttcaatctcaatctcaatctccactcttctcaacctgcaatgttcgccgactgccgtcgttcacggcatcaccttccggttaccggcaagctcattttcgttccggcgcggcacttaaatcacgtgaaagtccattaccgttagatcaatcagagggcgacagcgattccgatgaaaaaacaaggaagagtcgtaacgagaagaagcgtgaagctcgacgcgccgtccggtgggctatggatttagctaagttctctgctcctcaaattaagcgcattctcagagtggcttcaacggagcaagaggtatacgaagccgttatgctggccaagagactaggtcctgatgtacgagaaggaaagcgaaggcaattcagttacataggtagattattgcgagaagttaagcctgaattgatggatggtttaattcaggcaacaaaagatggagaccaaactaaatttcaggctttatctggttcggaactttcggctaccgaagatgttgatgaggaagttgaagagactgaatatgaggatgacgaagagagttctgaggacaatattgctttagccgatagatggtttgatggcttggtcaataaggacgttgacatctctaaagaatctattctctaagtgaggttgattttgatcgcccaggagtacgtggtcttgttaggaatgtacaatcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="15620" stop="11035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15320" g_stop="14951" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14950" i_stop="14883" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14882" g_stop="14834" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="419" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14833" i_stop="14749" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14748" g_stop="14697" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="471" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14696" i_stop="12368" i_length="2329">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12367" g_stop="12204" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="635" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12203" i_stop="11911" i_length="293">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11910" g_stop="11797" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="749" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11796" i_stop="11371" i_length="426">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11370" g_stop="11335" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="784" r_length="35" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-U332800" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15320" e_stop="14951"/>
          <exon e_start="14882" e_stop="14834"/>
          <exon e_start="14748" e_stop="14697"/>
          <exon e_start="12367" e_stop="12204"/>
          <exon e_start="11910" e_stop="11797"/>
          <exon e_start="11370" e_stop="11335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGCTAATGTAATGAAGCCTCTGATGAATTGGCCAAAATGGCATCACTATTTATACGTTCGCGCTTCATTCATCCACTTTGTTCAATCTCAATCTCAATCTCCACTCTTCTCAACCTGCAATGTTCGCCGACTGCCGTCGTTCACGGCATCACCTTCCGGTTACCGGCAAGCTCATTTTCGTTCCGGCGCGGCACTTAAATCACGTGAAAGTCCATTACCGTTAGATCAATCAGAGGGCGACAGCGATTCCGATGAAAAAACAAGGAAGAGTCGTAACGAGAAGAAGCGTGAAGCTCGACGCGCCGTCCGGTGGGCTATGGATTTAGCTAAGTTCTCTGCTCCTCAAATTAAGCGCATTCTCAGGTAATTAGATAACTTTCTAGTTACAATTGACTAAATGATATAAGTTAATGTTTCATATTTCACTGTAGAGTGGCTTCAACGGAGCAAGAGGTATACGAAGCCGTTATGCTGGCCAAGGTAGTTTTATGTTCTATCAATTGTGAGGTATTATTGCTATTTTTTCGTTGTTAGTGAGTGTAACATGTTTGCTCATTTGCCGCAGAGACTAGGTCCTGATGTACGAGAAGGAAAGCGAAGGCAATTCAGTTACATAGGTATGCTTTAAGATGCTTACTTTCTCCATCAAAGTGATCTTTATATCCAAATGTTTTATAGCATCGTTCTGTATTCAGATAAGCAGAAGTTGTAAGTTATAGTACCTTTAATCTATTAGATATCTCAGTTGTATACTTATATCCAATGTAGGATTAATATAGTCAATATTGATTACTTGATAAGTAAAAAGGAACTCGCAAATTACTTAATTAGCATGGTAGTGAACTGTTTTAAAAGATGGCATATAATCAAGAGCATTTGGTAGGAAAGAAGGAGAATATATGGAGTATAAGGATTTAGGAAAGAAGTATAGTAATCTCAATTTGCTAAAATTGAAAAAGCAGATGAGTTAGTAGTATGCAGTGCCGTATTTGAAATTCATAAACTTAATGTTTTACCTTGATTCAAATCACATTACACTTTTATCCATTATTTTGAATTCATTTGAAACTACACTCTAAAACATGACATTTTAAATTTACAAGTATGGATCGCCTCTTTTTAGCAGATGTCTCTATCAAAATGGGTCTATTACTTTCCTCGACCCCTAAAGGACAAACATGTTGACATGAATCCGTATATGGTTGTAGTTTACTTACACCAACAACATCAAATTATTAGAGAAGAACAGTACCCTTGGAGTTGTATTCTTCCTTACTAGTTGGTGCTTATCCCGCATATATATATTCTACCTTAGTGTTGGTGCTTATCCCGCATATATATAGTCTACCTTAGTGCTGGTGCCATCTTCTTTTTTATTTATTTGTATAAAATGGCGGGGGGGGGGGGGTTTCGACATTGAGAGGGACTACACTGGGTATGATGATGTTGTAGGATTTTTAGTGCTGGGGCTACCTAAAACCGCTCTTCCAGTGATTTTGTGATGTTAGAAACAATTCATAAATTAACAACTCAAGAAGAGGGAAGCATTTTTTGTCAATCTATTGTCGGTCATATATAATCTAAATTTCTCTGTATTGTTCAACCTCTGATCTTGTAAACATCTTAGTTTTCTTTGCCTCACTGGAACAACTATGGGATCTATGGTTCTTTCCGTCTGATAAATTCAGTAACTGATTTATCATAAGCTTTCTCTAGTCATCAATTTTACGCTATAAAAACAAATACTTGTGTTACACAAAAAAATAACAACAATTGGTGAAAGAAGTTTATGTCGCATAGAATCTTCTTGTAGTTCATATATTTTGCATCCACAAAAGCAAATAATTTATGAGATGTAATAGTAGGCTTTTAGGGGATTGATGCAAAAAGATAGAACTGAGCAGTAGGAATGCTTGTGAAACTGCCTTCAGATCTGATGCATAACGTTTGGTAATTTATCGAGTTCCTTTTGCAAAGTTTTTCATTCTCACCATTTGTCATCGGAGTGGCTTCTGTGACAGATTCAATGGAAAGGGCTCAAAGGAAATTTGATCTCTTTGGTGCAGAATGGAATGGATAAACAAATTTGTGAGTTGAGGTTGATGATCCCAAAACGTTATTGGGATAGCAAAAATAGAAAATTAGTGAATGGTAATAGAGTTCTAATTTGAATCCTTCTAATTTCCTTATCTCATACTTTTTAGGAGGTTCATGCAAATGGAGGGTAAACACTGAATAGTAATACTGCAGCGCTGTCAATTGAAAGAAGAGGAATCAACTTGATATTATTCTTGAACAGAAGCACACTAATAATAAATTTATTCTTTTGAGAAGGGTCATTCTAGTGAAAAAGGTGTTGGTGTGTCACTTAATGTTTGACCTATATATGCTATCTCTTATTAGAAGATCCAGCAAATTATATACAGCTGTTTGAGTACATACATGTTAATAACAGAGGAAGCAATCTGAAAATTAGATATCCCTTGTGAATGCATTATCCACTTCCTGCCTTTTCATTTCTTGTTCCAGGCCACAGTGAATATGCTTGTCATGTCTTTTGTTCCATTTTCTCTAGAACTGTGCTTTGTATAATTGATTTGTGAACTGTTCATTCCCATGACTGAAAAAATCATGATGTTCGGTATGAGTTGTGGTTTATTAATTGATTGATCCCTCATAGTAATTGTGATGCATCATATTACTAAAGTTCTATTAATGTTGTTATTTATCTACATTTTGATAAGAGATTGTTTACATTGATGGTTTGAATTCTAAAATCTATGCACTCATAAACCATGGAATTTTTCTGCTGAATATTTTGGGAGTAAGTTAACCTTGGAAATGTTTGCAGTGTTATAATTTCAGTTTCTTGTCTTGAAATTTGATCACATGAAATTAATGTATGTTGGATCTATATGCTCACGATGTAATATGAATTCATGTTAGGTAGATTATTGCGAGAAGTTAAGCCTGAATTGATGGATGGTTTAATTCAGGCAACAAAAGATGGAGACCAAACTAAATTTCAGGCTTTATCTGGTTCGGAACTTTCGGCTACCGAAGATGTTGATGAGGAAGTTGAAGAGACTGAATATGAGGATGACGAAGAGGTATGTCATAATCTCACTCCTCATTTTGGGGATCAAATTTCTTTGGCTGCTTTACTGTGTTTAAAGTTATGACTGAGCACAAGAAACTACAATCGCGAATCTATTTCCATGAAAAATGAACAAGTATGAGAACAACTGTTCTGCTCGTCTGTTTAATAAAAGAGCTGATTACGAAACCTGCATAATGTGGGTTAGATAACATAACAGGACAACAATTTAAATTTTACTTGGGAACTAATTTCAGGACTGCAATTGAAAGTTTGAAGTTCTCTTTTTCTTGTGCTTATTTTCAGAGTTCTGAGGACAATATTGCTTTAGCCGATAGATGGTTTGATGGCTTGGTCAATAAGGACGTTGACATCTCTAAAGAAATCTATTCTCTAAGTGAGGTTGATTTTGATCG-CCAGGTTAGTTCAGATGTTATACGCAGGTCTGGAATTATCTTCTTTTTTGGATTTTCTGGTGTATAAGTTGAATTGACACATAATTTTATGATTTTCATGCTCAATCTCTTCTTGTATATGTTCATTTCAAAAGACAAATAATCGGTAAAGGAAAACTAGTAATGAAGAATTAATATGGACAGATCAGTATTTCAGGCTGTCAAATGTGCACCCTGACCTTAAATGACATAGTTGTTAGCTTAGTTAACTGCGCGTTTCATTACAATTAGCTTAAAGGTGTCAACAATTTACTTGTGCTGTTTTTATGGAATAAGCTGCCCGTACTTGAGATATTAAAGAAAAATTATGTGTCTTTTGTATGTAAATTATAATTTGCTTGTCTTGCCATGGTATAATATTTATCTGATTATGTTCTATCTCGTTGTACAGGAGTTACGTGGTCTTGTTAGGAATGTACAATCAATA</genome_strand>
        <mrna_strand>CAAAAATGGCTAATGTAATGAAGCCTCTGATGAATTGGCCAAAATGGCATCACTATTTATACGTTCGCGCTTCATTCATCCACTTTGTTCAATCTCAATCTCAATCTCCACTCTTCTCAACCTGCAATGTTCGCCGACTGCCGTCGTTCACGGCATCACCTTCCGGTTACCGGCAAGCTCATTTTCGTTCCGGCGCGGCACTTAAATCACGTGAAAGTCCATTACCGTTAGATCAATCAGAGGGCGACAGCGATTCCGATGAAAAAACAAGGAAGAGTCGTAACGAGAAGAAGCGTGAAGCTCGACGCGCCGTCCGGTGGGCTATGGATTTAGCTAAGTTCTCTGCTCCTCAAATTAAGCGCATTCTCAG....................................................................AGTGGCTTCAACGGAGCAAGAGGTATACGAAGCCGTTATGCTGGCCAAG.....................................................................................AGACTAGGTCCTGATGTACGAGAAGGAAAGCGAAGGCAATTCAGTTACATAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATTATTGCGAGAAGTTAAGCCTGAATTGATGGATGGTTTAATTCAGGCAACAAAAGATGGAGACCAAACTAAATTTCAGGCTTTATCTGGTTCGGAACTTTCGGCTACCGAAGATGTTGATGAGGAAGTTGAAGAGACTGAATATGAGGATGACGAAGAG.....................................................................................................................................................................................................................................................................................................AGTTCTGAGGACAATATTGCTTTAGCCGATAGATGGTTTGATGGCTTGGTCAATAAGGACGTTGACATCTCTAAAG-AATCTATTCTCTAAGTGAGGTTGATTTTGATCGCCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GAG-TACGTGGTCTTGTTAGGAATGTACAATCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318529" ref_strand="+" ref_description="SGN-U318529        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: AT4G36040.1 | Symbol: None | DNAJ heat shock N-terminal domain-containing protein (J11), identical to dnaJ heat shock protein J11 (Arabidopsis thaliana) GI:9843641; contains Pfam profile PF00226 DnaJ domain | chr4:17049174-17050277 REVERSE | Aliases: T19K4.170, T19K4_170 (evalue: 2e-21, score=99.4) genbank/nr: gi|1684851|gb|AAB36543.1| DnaJ-like protein [Phaseolus vulgaris] (evalue: 1e-23, score=112)">
      <seq>aacattcactcacacgctattattttctccaataactaaccaaattcttctagaacaattattccaaatctatggcttcttcttcttttcttctctccacttcaattaccggctctaaactctccgccgctgcaccaccgcggagttctgttagcttcaagcagcggccgttctctgtttccgccgcgtactccactgcggagaggacttctactgctactactagtagctctacaatcgcctcacatacatcgttatacgaagttttagggattcaatttggagctaattctcatgaaattaagtctgcttaccggaaattagccagaattttgcatccggatgttcgtaattcgtcggcggaggactttataagagtccaatcagcgtatgctactctttccgatccggaaaaacgtgctaattatgatcggaacctatttggaaatagaattgcaaggcctgttggtttctcaccggcgggagctcgcagccattatactgttcgccgaggatgggaaaccgatcagtgttggtagaatttttcgaaatctcccgcccgattagtcacaaaatttagatgagcacgacttaatttctgatcgtaactcaaatctgaaatttcttataacgataataagatccgttatttgtacagtacatgtaaatgtgactttatgtatataatactttaaaattttgttatgttatttgggattaagataaaattagaatttacaatatacttacctttttttttttgtaaccacataaataatctttaatatttagtccaaatactattacgtacgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18914" stop="17441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18614" g_stop="17888" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17887" i_stop="17826" i_length="62">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17825" g_stop="17741" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="816" r_length="89" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-U318529" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18614" e_stop="17888"/>
          <exon e_start="17825" e_stop="17741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTCACTCACACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACCACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGACCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAAATTTGTTATGTGATTTGGGATTAAGATAAATAATCAGACTATGTTTTTGAAGTCTGAAAGTTCATCAAAATTGTTCACTCAACATTTGTATTATTAGAATTTACGATATACTTACC---TTTTTTTTATAACCACATAAATAATCTTTAATATTTAGT-CAAATACTATTACGTACGTAAT</genome_strand>
        <mrna_strand>AACATTCACTCACACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCGGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGGTTTCTCACCGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACGACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGATCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAATTTTGTTATGTTATTTGGGATTAAGATAAA..............................................................ATTAGAATTTACAATATACTTACCTTTTTTTTTTTGTAACCACATAAATAATCTTTAATATTTAGTCCAAATACTATTACGTACGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332923" ref_strand="+" ref_description="SGN-U332923        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G75790.1 | Symbol: SKS18 | multi-copper oxidase type I family protein, contains Pfam profile: PF00394 Multicopper oxidase | chr1:28458442-28461167 REVERSE | Aliases: F10A5.2, F10A5_2, SKS18 (evalue: 2e-80, score=221) genbank/nr: gi|21618153|gb|AAM67203.1| pectinesterase, putative [Arabidopsis thaliana](evalue: 2e-77, score=221)">
      <seq>tttacaatttctacttttgttagtgtccattcaaaactacttcactttgattgggttgtttcaatttcctctaatgcactcattggagatcctaaagaggttattatgatcaataatcagtttccagggccccttttgaacacaacaacaaatgatgtggtcattgtcaatgtttataacaacttgactgaacctttcctcatgacatggaatggagtgcaattaaggaggaattcatggcaagatggagttgaaggaaccaattgtccaattatgcctggaaaaaattggacatacaaatttcagatgaaagatcagattggaagtttcttctattttccttcactctttttccagaaagctgctggaggctatggtcctattcgaatcaacaacgttgagactgttcctcttccatttacgcgtcctgattatgaatatgatatactaattggagattggtattttgatgagtataaggacttgagaatttctctagaagatggatgcaaaatgccttttccagatgccattctcatcaatggtatgagatctgatcaagctacctttgagtttcaacccgcgggctacctatagattgagaatctcgcacataggattaaaaacaaccttaaatttcaaaatccaggatcatgaaatgcttttggtggagactgnaggagcctacacttncaaaaagtaccaccaaagtctagacatccatgttggtcaatcttattctgttcttgttactgcaaagaacacagctataatagctcgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="26011" stop="23713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25711" g_stop="25613" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25612" i_stop="25503" i_length="110">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25502" g_stop="25393" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="209" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25392" i_stop="24952" i_length="441">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24951" g_stop="24681" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="480" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24680" i_stop="24590" i_length="91">
            <donor d_prob="0.501" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24589" g_stop="24487" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="583" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24486" i_stop="24214" i_length="273">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24213" g_stop="24013" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="784" r_length="201" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-U332923" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25711" e_stop="25613"/>
          <exon e_start="25502" e_stop="25393"/>
          <exon e_start="24951" e_stop="24681"/>
          <exon e_start="24589" e_stop="24487"/>
          <exon e_start="24213" e_stop="24013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACAATTTCTACTTTTGTTAGTGTCCATTCAAAACTACTTCACTTTGATTGGGTTGTTTCAATTTCCTCTAATGCACTCATTGGAGATCCTAAAGAGGTCACTTTGTTTTAGTATTTTTTTTCTTAACCTCAATTTTTTTTTGTTAATTATGTTTTTTTTAAAGAATATTTAAAATAACTATTTTTTTTTTGTGATGGTGAAAACAGGTTATTATGATCAATAATCAGTTTCCAGGGCCCCTTTTGAACACAACAACAAATGATGTGGTCATTGTCAATGTTTATAACAACTTGACTGAACCTTTCCTCATGACATGGTAATTTATTTAATATTTTTGTTAGTTATTTCTAAGTATGTTTTATGACCATTCATACGTCAGCGGTGGATATAGGACGAGTTCTGTGGGTTCAATTAAACTCGTTGCTTTTAACTTGAACTAAGTATACATACACGATTTTTAACGATATTGCATATATGTAATGAAAGTCAACATGTAGGGACTACAGAAAATGCAACTATTGAGACAACTCAAAAATAAAATTAGTGAGGTAAGGTCAAGCTCGGAAAATGATTCAATGGATTCGAAAGAATAAATTTTGCTCTGCATGAATCAAGTTCTTCCATGAGACTATGATCATACTCATTTTGCTCGTTAAGTGTTAACTGTATTCTGAATTTGTCTCTGATACATTCATGATTTCTTTAGAACAACTTATATTCAATGATCTTTAACTTAAAATATTGCGAAAACTATAAGGAATGGAGTGCAATTAAGGAGGAATTCATGGCAAGATGGAGTTGAAGGAACCAATTGTCCAATTATGCCTGGAAAAAATTGGACATACAAATTTCAGATGAAAGATCAGATTGGAAGTTTCTTCTATTTTCCTTCACTCTTTTTCCAGAAAGCTGCTGGAGGCTATGGTCCTATTCGAATCAACAACGTTGAGACTGTTCCTCTTCCATTTACGCGTCCTGATTATGAATATGATATACTAATTGGAGATTGGTATTTTGATGAGTATAAGGTATGTGTAAAGTCGTAACATAAGTATAAATGCTATAGATTATGAAAATGCACAATGTAGTTTAGTTGTAACCTTAATTGTTTTTGTGAAGGACTTGAGAATTTCTCTAGAAGATGGATGCAAAATGCCTTTTCCAGATGCCATTCTCATCAATGGTATGAGATCTGATCAAGCTACCTTTGAGTTTCAACCCGGTAAGTTTACGTTTGTATAGAGAATTACCAACAGTTGTAAGATCTGCGTACACTCTACTCTTCTCAGACCCCACCTAGTGAGATTTCACCGGGTATGTTGTTGTGGGACCGAGGTGTAGTTGTGCGATTTTTAAATCCTTTTGACATAAACAAAGCATTTTGTGTAGTCATAAAGGTACTAGCTCGTGTTCGTATCTTAGGTGGTTCTGAATCCCCTTGTTGAAAATCCTGATTCCGTCTAATGACATTTTGGTTTCTCTGTTTCGTCTTCAG-GGGCTACCTATAGATTGAGAATCTCGAACATAGGATTAAAAACAACCTTAAATTTCAAAATCCAGGATCATGAAATGCTTTTGGTGGAGACTGAAGGAGCCTACACTTCAAAAAAGTACCACCAAAGTCTAGACATCCATGTTGGTCAATCTTATTCTGTTCTTGTTACTGCAAAGAACCACAGCTATAATAGCTCGTATC</genome_strand>
        <mrna_strand>TTTACAATTTCTACTTTTGTTAGTGTCCATTCAAAACTACTTCACTTTGATTGGGTTGTTTCAATTTCCTCTAATGCACTCATTGGAGATCCTAAAGAG..............................................................................................................GTTATTATGATCAATAATCAGTTTCCAGGGCCCCTTTTGAACACAACAACAAATGATGTGGTCATTGTCAATGTTTATAACAACTTGACTGAACCTTTCCTCATGACATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGAGTGCAATTAAGGAGGAATTCATGGCAAGATGGAGTTGAAGGAACCAATTGTCCAATTATGCCTGGAAAAAATTGGACATACAAATTTCAGATGAAAGATCAGATTGGAAGTTTCTTCTATTTTCCTTCACTCTTTTTCCAGAAAGCTGCTGGAGGCTATGGTCCTATTCGAATCAACAACGTTGAGACTGTTCCTCTTCCATTTACGCGTCCTGATTATGAATATGATATACTAATTGGAGATTGGTATTTTGATGAGTATAAG...........................................................................................GACTTGAGAATTTCTCTAGAAGATGGATGCAAAATGCCTTTTCCAGATGCCATTCTCATCAATGGTATGAGATCTGATCAAGCTACCTTTGAGTTTCAACCCG.................................................................................................................................................................................................................................................................................CGGGCTACCTATAGATTGAGAATCTCGCACATAGGATTAAAAACAACCTTAAATTTCAAAATCCAGGATCATGAAATGCTTTTGGTGGAGACTGNAGGAGCCTACACTTNCAAAAAGTACCACCAAAGTCTAGACATCCATGTTGGTCAATCTTATTCTGTTCTTGTTACTGCAAAGAA-CACAGCTATAATAGCTCGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322035" ref_strand="+" ref_description="SGN-U322035        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain PF05003: protein of unknown function (DUF668) | chr1:10905799-10908874 REVERSE | Aliases: None(evalue: 6e-76, score=281) genbank/nr: gi|18397646|ref|NP_564362.1| expressed protein [Arabidopsis thaliana] gi|20466802|gb|AAM20718.1| unknown protein [Arabidopsis thaliana](evalue: 5e-74, score=281)">
      <seq>tgtggagaagcttgttgacattgttacgtatatacatcaagcaattgtggaagcatttggggacaacggattgacatctgctgtcaaggagcctgtgaagaaacaagaaagattgggagtagctggtctggctttacactatgctaacttagttactcaaattgataacattgcttcacggcccaccgctcttccccctaacatgagggatggattatataatggattgcctccttccataaaaacagcccttcgttcacgtctgcaggcggttgatgcaaaggaagagctcacaattccgcagattaaagcagaaatggaaaaaactcttcactggcttgtcccagtcgctgcagatactacgaaagcacaccaaggctttggatgggttggagagtgggccaacaccggaagcgagtttggcaagaagaaccctccacaagtttccctcattcgactgcagacactctaccatgctgacaaacagaaaatggactaccatgtccttgaactagtgacatggcttcaccgtttgatcagcctggtaagatataacgggcccaaggcttttccaggacgatcaccaacacgcaaaggacttaatctgcagactgagttgatgatgaacaccaactcaaaaacacctaagattcagatttctctcgaagataggactttactagagaaagtgatgaaacagaaatgtttggttcctggaagaagcaagagtcaggagtttctgttgcccaagaatcggcaaaaggtgtgggcgctaagtagaagcatgggtaactcccctcgtaccgactttcaacatccaaaggctactgttttggatatattagatggcttacattagcattttgagttgctaaagagagatctcaagcaaaaaaaaggttcatttttttgttttcttgattcttagctccctcctcctatggaactaaagcctctttgtttatagtctctccatcatatggtgattgggaaaaatgttatactgtagcatattattatcgccaaaatacatttagattctagtggaattgaatgttcatggatgacagggaatgatgtttatttgggaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="29424" stop="26130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29124" g_stop="29057" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29056" i_stop="28254" i_length="803">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28253" g_stop="28150" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="172" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28149" i_stop="28057" i_length="93">
            <donor d_prob="0.399" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28056" g_stop="27940" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="289" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27939" i_stop="27804" i_length="136">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27803" g_stop="27727" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="366" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27726" i_stop="27612" i_length="115">
            <donor d_prob="0.106" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27611" g_stop="27567" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="411" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27566" i_stop="27110" i_length="457">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27109" g_stop="26433" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="1088" r_length="677" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1090" polyA_stop="1114"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-U322035" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1088</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29124" e_stop="29057"/>
          <exon e_start="28253" e_stop="28150"/>
          <exon e_start="28056" e_stop="27940"/>
          <exon e_start="27803" e_stop="27727"/>
          <exon e_start="27611" e_stop="27567"/>
          <exon e_start="27109" e_stop="26433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAGAAGCTTGTTGACATTGTTACGTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAACGGTATGAGAGTACATGTATTTTTTTGTTGATCAGTTTAAATTTGATGGCTGTCGTTATCAGCATTCTATTATTTGCAAATAACGAAGCTTAGAGTATCTAACCTTCATTGATGTTTGATAAATGGCTGTTTGCGCTCCACACCACTAAATTGCACCAGCCACTTCATTCTTTTGCCTCAGATACCTTTTACATGTTAACATTTTATCTTATTGAACTATTTTTCATTAATAATGGTTATAGAGGAAATCCTAAGCCAAATCCTGACTTTAAAAAAAAATGTAAAATGGTACGGGAAATTAAACAAAAGGGTAACTCCTGAGGAAAAAGGGAGGACAATCTTCAGTGTTTTTCCTTTTTCGGTCTTCAGTCCAAGTTTTCCAAGTCACTACAATTGCGTAACATTTTAGGAAAGATGACAGAGTTGTGACTAATCATTGATCTGTACATTTACCAAGCGAGGAATTCTTACTAAAGATTACGGCAAAGTCAAGCTATATATTCTCTCCGTTTCAATTTGTTTGCCCTGCTTTCTTTTTTAGTCCATTTCATAAAGTACGTCTCTTTCCTTTTTTGGCTACTCGTTAACTCCAACTGTCTATGTGACACGTTTAAGACCACAAGATTAAAAAATCTTCTTTATTTTCTTTAACTCCGGATCAATCAAAACCACACAAACAAATTGAAATGGGGGGAGTACTCTAGCTATTTACAATGCAGAGTTAACTTGCATATGTACACACATTGTCTCTTCTTTCCCAGAGTATGCTTTCTTAAATATAGACGAATCTCTATGCTTGTTGCAGGATTGACATCTGCTGTCAAGGAGCCTGTGAAGAAACAAGAAAGATTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATTGTAAGTTTTAGTGCTGAATTAGAGCGATACTGATTGCGCTGTTTACGACTGCTCCAATAGTATTCATAACAATGGGATTTGATATCATGTCAGGCTTCACGGCCCACCGCTCTTCCCCCTAACATGAGGGATGGATTATATAATGGATTGCCTCCTTCCATAAAAACGGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAGGTTTGTCCTCCATATTAATTTCTCATTCTTCCCCCCTTTCTCCCTTTTTCTCTTTTTGGGGTCTAATGATACCTCCCGTTTGCATTTAAGTTCTATATCTGTATAAAATAGTTTCTCCACGTTGTGCTTTTTGCAGCTCACAATTCCGCAGATTAAAGCAGAAATGGAAAAAACTCTTCACTGGCTTGTCCCAGTCGCTGCAGATACTACGAAGTATGTGTTTCGACAAAAGCTCTCCCCCCTAACCACCACCACACACACGCACAAACTTTTGCTAATATATGCTGATTCTTTTTTGTGTTTTTCTCTCTTGGCAATGGGATAACAGAGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAACACCGGGTTAGTTCCATAAGTCTCTACATGAGCAAAATTGAATATTTACATTTGCAGTTTAGTTTGGATAGCATTCTTCAAGAATATAATATTTGGAGGCGGATGCAGCCATGCACTGTGGGTTCAATTGAACCTCGTTTATTCTATATAACATCATTTGTTTTGATATAATTTTTTGGTTGTGATAGTGAATGTTATTAATAGAGAATATATGATACAACATAACATGAACGATTGGTTCAAAGAAAATATGGTTGTTATATAGTTACATGCTTTATAGGATGCCAGATGGCTATTATAGAGAGGGCTGACTGTATATATAAGCATAATTTCAATAAATATTAGATTTTTGAACCCATAATTCAGTTGTACAATGATATCTGTTAAGGACTTCAAAAAATTGAAACATCAAAGTTTTAAATTTTCGATCAGCTTCTAATGTTATTGGTTTTTTCTCTTTCAGAAGCGAGTTTGGCAAGAAGAACCCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCTGACAAACAGAAAATGGACTACCATGTCCTTGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATATAATGGGCCCAAGGCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGG</genome_strand>
        <mrna_strand>TGTGGAGAAGCTTGTTGACATTGTTACGTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGACATCTGCTGTCAAGGAGCCTGTGAAGAAACAAGAAAGATTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATT.............................................................................................GCTTCACGGCCCACCGCTCTTCCCCCTAACATGAGGGATGGATTATATAATGGATTGCCTCCTTCCATAAAAACAGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAG........................................................................................................................................CTCACAATTCCGCAGATTAAAGCAGAAATGGAAAAAACTCTTCACTGGCTTGTCCCAGTCGCTGCAGATACTACGAA...................................................................................................................AGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAACACCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGTTTGGCAAGAAGAACCCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCTGACAAACAGAAAATGGACTACCATGTCCTTGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATATAACGGGCCCAAGGCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTTTATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344314" ref_strand="+" ref_description="SGN-U344314        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, low similarity to BRE alpha b isoform (Homo sapiens) GI:16326573 | chr5:16999544-17002112 FORWARD | Aliases: MDH9.17, MDH9_17(evalue: 6e-93, score=337) genbank/nr: gi|55167890|gb|AAV43777.1| At5g42470 [Arabidopsis thaliana] >gi|52627091|gb|AAU84672.1| At5g42470 [Arabidopsis thaliana] >gi|42568272|ref|NP_199062.2| expressed protein [Arabidopsis thaliana] (evalue: 5e-91, score=337)">
      <seq>cgatttatcagacggagcccgtatccatccgtatcgttgccggattaaaaaaagcaccgattgaactccgacggctgttaaagcaatctgtgtgaaattccgacgattctccgccatggcgatcgacgcagtccctccactcatcgctgcacagctgaattacatagtcactcacgctccattctctgttaaggtagaaaatatgtgttcaggatgcaaaaacactggtttgcttgatcggttctcgttagtaatccccttctgtcttgatttcatcaaatgggatgtgatgtacaatgctgtgtatccattagcagcaccagatgttatatttgggtcggaagatgaaacttttcgaccttatcatgctgtcagtgatgctagtgactcaaagtcattgaagaaccctcttactgactggaataatagagatccgactagtcttttcactctggttctgcagctgagggagttgtacaaggcgtaccaaaagaaaagagttgaacaagttgatgatgacaggttgaagtttgaaatcagcacaatgctttccagagaggggattgaaatgtctttgagttcaaatattgataagccagaagaggttaaatttgctgtcccactgctggatttggatttaaacaaaatggttgcaggatccacttggcgccatccacagaagatatacctacaggttatatatccagttggcaggaaatactccagtgctccttctgccccacgtttgaaattggtatcttctcctgaattgaaggctgtcttctcaattgatgatttcaggcttcctccatggttggatggaatgtgtatggctgagtaccttccgacattagaagagatgcttgaatcacagattaaagatgcagttgcatccattgaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="42939" stop="47334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43239" g_stop="43431" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43432" i_stop="43524" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.549" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43525" g_stop="43612" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="281" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43613" i_stop="43734" i_length="122">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43735" g_stop="43921" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="468" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43922" i_stop="44018" i_length="97">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44019" g_stop="44109" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="559" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44110" i_stop="45621" i_length="1512">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45622" g_stop="45657" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="595" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45658" i_stop="45784" i_length="127">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45785" g_stop="45883" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="694" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45884" i_stop="46588" i_length="705">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46589" g_stop="46719" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="825" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46720" i_stop="46869" i_length="150">
            <donor d_prob="0.307" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46870" g_stop="46918" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="874" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="46919" i_stop="47004" i_length="86">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="47005" g_stop="47034" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="904" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-U344314" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43239" e_stop="43431"/>
          <exon e_start="43525" e_stop="43612"/>
          <exon e_start="43735" e_stop="43921"/>
          <exon e_start="44019" e_stop="44109"/>
          <exon e_start="45622" e_stop="45657"/>
          <exon e_start="45785" e_stop="45883"/>
          <exon e_start="46589" e_stop="46719"/>
          <exon e_start="46870" e_stop="46918"/>
          <exon e_start="47005" e_stop="47034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATTATCAGACGGAGCCCGTATCCATCCGTATCGTTGCCGGATTAAAAAAAGCACCGATTGAACTCCGACGGCTGTTAAAGCAATCTGTGTGAAATTCCGACGATTCTCCGCCATGGCGATCGACGCAGTCCCTCCACTCATCGCTGCACAGCTGAATTACATAGTCACTCACGCTCCATTCTCTGTTAAGGTCATTTTATATGCTTTTACTCAAAAAAATTAGGTCATTTCTGTAAACTTGCTTATGGTTATTCACTGACAAGGAACTTTGAAGCTTGTTCAGGTAGAAAATATGTGTTCAGGATGCAAAAACACTGGTTTGCTTGATCGGTTCTCGTTAGTAATCCCCTTCTGTCTTGATTTCATCAAATGTGAGTTACTTTTTAGCTTTCTAATTTACATTTCTGTTCAAGGTTGCATAGTGAATTAGTCTAGCTGTATATAGTTTGATCATGTTACCAACCTGTATTTTTGATGATGAAATTTGGGGTAGGGGATGTGATGTACAATGCTGTGTATCCATTAGCAGCACCAGATGTTATATTTGGGTCGGAAGATGAAACTTTTCGACCTTATCATGCTGTCAGTGATGCTAGTGACTCAAAGTCATTGAAGAACCCTCTTACTGACTGGAATAATAGAGATCCGACTAGTCTTTTCACTCTGGTTCTGCAGCTGAGGTTGGGCATTTTCACTTTTCACATCATTAGTTTGTGTAAAGTGAGGAACATTTTCTGAAAAAAGAAGAGCTGAGATTTAGTTTTTTATGGTTGTTAGGGAGTTGTACAAGGCGTACCAAAAGAAAAGAGTTGAACAAGTTGATGATGACAGGTTGAAGTTTGAAATCAGCACAATGCTTTCCAGAGAGGTAATTCAGTTTGATCATCAAGTTGTTGTTTGGGTTAGATTATTCGTGTGCACTGGACACCTTTCGGTAGTAAGGTGATCATTGTAATTTCATTGAATTGTAAAATGGGGACAGTGTTGTGTAATCTAGCTCCAACATTTTCCGAACTTGTTAGCTTGTCATTAATTTAGTCTTTGTCTGCTGCTAATTCGCCTCCAATGTAAGTATATGATATGGAATCAGGAGTTCCTCCCAATGGAGCTAGGTGTGCTATTGCATTGGTATTATTGGCATGATCATGACAACCAACAAATTATACTTGATTCGTTATAACTAAGAAGTAAAAGGATACTTGTATTGAAAATCAAATCTTAGAGAGAATCCCAAAAAAATTGGAGTGTGTAAAGCATCTACTACAGGCATCTAGAGAAGAATCTCGGAAGGAGATTAAACGAAAAGGAGTGACGTAGAAATTTCTATATAAAAGACATTCCATTTTTCTTCAATTCCATCTTAGCTTTTGTATTGATTATAGAAATCTATAAAACTTTCCAAGACTTTCGCCAATGATTTTGGTCAAAGTACTTGACCAAATCGGACACGGATCCCACACCCGCACCGATGTCGTGTCGACACGGGTGCGGCACCCCGTGTTGGCACCAAAAGTGAAGAGTCCAAGCAACTTAGGTTATGAGCATATGTGGTCTAAGTTGCTTAGACTTTTCACTTTGGTGCCGCACCCGTATCATAACGACGTAGGTGTGGGATCTGTACCTGATTTAGTCAACTAATTATGGGTACTTTGACCAAATTCGATGCAGGAATTCGAGACATATTTGATGATTTCTGTAATCAAAACTAAGGTGAAAATGAAATACCTTGTATATATAAATATCTATTGCCACTCCCTTTCCTTTTATCTCCTTTCGGGATTCTCGTCATGTTTTCCACATAATATCTCATAATTTAGGTTTTAGAACTTTATTTTTACATATTGGAATTATTTTAAGCCGAATCCCCGCACTCGTATACATACATGGATCCGTATTCCCGAATCTTAAAATTTAGATCATAGAGGATGTGATCTCTAGATCCATACCCATAATCGGACACCTGAACCTGAGTCTGAGCAACTTAGTCTATGGTTGCTTTCTAAGGTGTATGTCAAAATTTGCTGTTTCTGACAATCGGCAGGTGGTTAACACTAGACCAAATTGATCTAGGTAGCATACATCATCCTGTGTGGTGAATTTTTAATATGTCGCTACATTTCAATTCTTACAGTGGATGGCCTATTGCTTATAGGTTTAGCTATTAAGATTATGTGTGATGGATTCATAGGGCTCATTTGAGTGCAAGTGTTAACTCTAATTTTGATGGTTTTCTTGCCTAATTTATTAGATTGGAAGACTCTATAGAGGGGAAGGGGTTTTAAAAGTGTGATCGCGGCTCTCTCCTCCTCAAGTTATAATTTGTTCTTTCTATAACGAGCTTTAATTATACTTCGTTCTGTTTTTGATCATTATGTTGCAGGGGATTGAAATGTCTTTGAGTTCAAATATTGATAAGGTACTCCACTGTCACTAACACCTGCATTTAGTAATCCCCTTTCTGCTCTTATGTGGAAGGATTATCCTGCGTAACGTTCGAATCTTGACTGTATGGATGGTTTATGTGCCATTAAATTGTAGTGTAGCCAGAAGAGGTTAAATTTGCTGTCCCACTGCTGGATTTGGATTTAAACAAAATGGTTGCAGGATCCACTTGGCGCCATCCACAGAAGATATACCTACAGGTCGGCTTTCTGAAGGATCTTTCCGTACATTGTGTATGCTTGTCTGTATATATTACCAGAAGATGAAAACACTGATTAAATTTTAATATCTCCAACACAAATGAAATAGTTATATGGTTTGATTGTCAACTGAAACTAAGCCCTAGTCTCTGAAATCTATTTTAGTTTGCTTTCCTTAGTTTTAAATGTAATAGCTATAATAATTAGAAGAATGAAGATCACATTTTAAATAAAATGTTTTTTCTTAAAGAATCATAGTAGTAGAAGATACTGATTGAAGGAGATTTAAGCATCGCATCATTTGAGGCATTATTTTTGCGTAACTCTGGGGGAAAATTAGGATGAATGAATGCAATACATCTTTTTTGTCATTTACTATTGAAGGAGATTTAAGCATGGCATCATTTGAGGATCATTTGAAGCATTATTTTTGCATATCTTCTGGGGAAAATTTGGATGAATGAATGCAATACATTTTTTTTGTCATTTACTTGCTTTCATATCATTCCTAAAGCTGCATCATTTAAGTGTTAAAACTGAAACTTTTTGTGGAGGTTAAATAGTTCATTTGTTGGTTTAATTGTTTCTTCAGCTTGTATTTATCATTGAGACTAAATGAGTAATTTGTTTGTCTAATCATCTTTTGGCTTGTCATTTTTTCTTCCTTTCTCGGTTCTCTTTTGATTAACTTTACTAATGTGACAGGTTATATATCCAGTTGGCAGGAAATACTCCAGTGCTCCTTCTGCCCCACGTTTGAAATTGGTATCTTCTCCTGAATTGAAGGCTGTCTTCTCAATTGATGATTTCAGGCTTCCTCCATGGTTGGATGGAATGTAAGTTCTGATTATTGCTGCAGAAGCAAGCAGCCTTGTCAACCCTTCTCCTATTTGAGGAGCATTTTTGTTATGCTATCCTTTCCAACAAAGTTGCGGTATCATCTTATGTTCATAATTCTTTTCTCTTTCTTCTTTTTAAATTTTTAGGTGTATGGCTGAGTACCTTCCGACATTAGAAGAGATGCTTGAATCACAGGTTAATTACTAATTTCTCCATTGGGGTTTATGCCAAATTATTTTGTTAAAGTTCTCTTTCCTGTTTTGTCCATCTGCTCTTGACAGATTAAAGATGCAGTTGCATCCATTGAAAGT</genome_strand>
        <mrna_strand>CGATTTATCAGACGGAGCCCGTATCCATCCGTATCGTTGCCGGATTAAAAAAAGCACCGATTGAACTCCGACGGCTGTTAAAGCAATCTGTGTGAAATTCCGACGATTCTCCGCCATGGCGATCGACGCAGTCCCTCCACTCATCGCTGCACAGCTGAATTACATAGTCACTCACGCTCCATTCTCTGTTAAG.............................................................................................GTAGAAAATATGTGTTCAGGATGCAAAAACACTGGTTTGCTTGATCGGTTCTCGTTAGTAATCCCCTTCTGTCTTGATTTCATCAAAT..........................................................................................................................GGGATGTGATGTACAATGCTGTGTATCCATTAGCAGCACCAGATGTTATATTTGGGTCGGAAGATGAAACTTTTCGACCTTATCATGCTGTCAGTGATGCTAGTGACTCAAAGTCATTGAAGAACCCTCTTACTGACTGGAATAATAGAGATCCGACTAGTCTTTTCACTCTGGTTCTGCAGCTGAG.................................................................................................GGAGTTGTACAAGGCGTACCAAAAGAAAAGAGTTGAACAAGTTGATGATGACAGGTTGAAGTTTGAAATCAGCACAATGCTTTCCAGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTGAAATGTCTTTGAGTTCAAATATTGATAAG...............................................................................................................................CCAGAAGAGGTTAAATTTGCTGTCCCACTGCTGGATTTGGATTTAAACAAAATGGTTGCAGGATCCACTTGGCGCCATCCACAGAAGATATACCTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATATCCAGTTGGCAGGAAATACTCCAGTGCTCCTTCTGCCCCACGTTTGAAATTGGTATCTTCTCCTGAATTGAAGGCTGTCTTCTCAATTGATGATTTCAGGCTTCCTCCATGGTTGGATGGAAT......................................................................................................................................................GTGTATGGCTGAGTACCTTCCGACATTAGAAGAGATGCTTGAATCACAG......................................................................................ATTAAAGATGCAGTTGCATCCATTGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312314" ref_strand="+" ref_description="SGN-U312314        Tomato 200607 #1 [96 ESTs aligned] arabidopsis/peptide: AT1G75780.1 | Symbol: None | tubulin beta-1 chain (TUB1), nearly identical to SP:P12411 Tubulin beta-1 chain {Arabidopsis thaliana} | chr1:28454802-28457301 REVERSE | Aliases: F10A5.3, F10A5_3 (evalue: 0, score=811) genbank/nr: gi|77963735|gb|ABB13293.1| beta-tubulin [Lycopersicon esculentum] (evalue: 0, score=836)">
      <seq>tcattaccactagaaatatcactctctttcccatttctcccttcatcttcatcttcatcttcatctcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacgtttgttggcaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgatgaggttgctgatgatcaataccaatcctaaaaacttctctacatttgatatattgttggtttgttcaatttctgccaagtgaacttgttatgtttcctattgtcttctcttcatttgaactttgtgtttggtttgttgagaaatgaaatgtcttttattggtctaaaaaaaaaaaaaaaaaaacagtagcttcaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanannggggggggggggggggcccccccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50267" stop="53524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50567" g_stop="51097" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="801" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="53247" g_length="851"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="1652" r_length="851" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1689" polyA_stop="1711"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-U312314" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1652</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50567" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="53247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACCACTAGAAATATCACTCTCTTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATATACTGTATTACAGTAGCTTCTTGTA</genome_strand>
        <mrna_strand>TCATTACCACTAGAAATATCACTCTCTTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGCAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTAAAAAAAAAAAAAAAAAAACAGTAGCTTCAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326673" ref_strand="+" ref_description="SGN-U326673        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>ttcagaaccgccgcaaaattcaacaagaatgaaaaacagcaagcagaacgaactgtgtgatttgtttcgtaatccatctaaagatgaaattgaagtagtaaaaattctactcgatctcgaaaatctagtgagagaaagacaatattgttcggtaatttggggttccaagaagaggagatctaatcgacgaatcgattcttcttcttctcccgtcgtcaactcatcaagtagttcgaaaatcgatggaaacgaaattgaacccaaaattaaagctgaagttactagccctgctagccctgctactcctctttcattttccccaagtgaatctgatgaaaaatccaaacattcttctcgcagaagctataaacgaaagacgagggaggagctaatggataaaataaaacaattatctcaatgcagagaatcgcttacaggggaagtggagaatgttcgtaattactacaataatcaaaaagcttacaatatgaagttgaaagcaatgaaagaagaggtaacaagaatggtgaatttccaagggggtggtgttaatttaggtcaactttactctaatcctggaatagagcccaatcgtcaacagccgttcattatggatcaggttgcttcaagatcagaagctattcatagatttcaatacccattgggccagctgcaacaggcccaacatttgtactcaaatgggttgggcccaggcccaatgggccttcctgatctgaatgttaaggtggaagaggctttcgcattggaccagttcgatatcgatagaatgaatgttgaaaggaaggcccaatatgctgaagctagaaggaagaggaggattaaaagaatagaaattaagaattcatctggttttattagaccaccaagaaggacatagtaggtaatttttgtatttttgatccttccatagaatgatagtattatttttttgtgagcgaaaaaaannaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="56968" stop="54582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56668" g_stop="56293" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56292" i_stop="55939" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55938" g_stop="55876" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="439" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55875" i_stop="55766" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55765" g_stop="55691" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="514" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55690" i_stop="55329" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55328" g_stop="54885" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="958" r_length="444" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="968" polyA_stop="979"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-U326673" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>958</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56668" e_stop="56293"/>
          <exon e_start="55938" e_stop="55876"/>
          <exon e_start="55765" e_stop="55691"/>
          <exon e_start="55328" e_stop="54885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGAACCGCCGCAAAATTCAACAAGAATGAAAAACAGCAAGCAGAACGAACTGTGTGATTTGTTTCGTAATCCATCTAAAGATGAAATTGAAGTAGTAAAAATTCTACTCGATCTCGAAAATCTAGTGAGAGAAAGACAATATTGTTCGGTAATTTGGGGTTCCAAGAAGAGGAGATCTAATCGACGAATCGATTCTTCTTCTTCTCCCGTCGTCAACTCATCAAGTAGTTCGAAAATCGATGGAAACGAAATTGAACCCAAAATTAAAGCTGAAGTTACTAGCCCTGCTAGCCCTGCTACTCCTCTTTCATTTTCCCCAAGTGAATCTGATGAAAAATCCAAACATTCTTCTCGCAGAAGCTATAAACGAAAGGTACTATTCTCAACCCCCTCTCTCTCTTCTTCTTCTTCTTCATGAATTCATAATTGTTAATTGATTTTCAAAATTGCTTTCATCGATTTCGATATCTAATATCTTTTTCTCTCTCTAGTAACCAGTTTCAATGCCTACCCTATTTCGGATAATTTTTGTTTTATGACATTTTAAACTTCGTTACAACAACAACAACGAATATCACAATTATGAATAACATATGCAGTGAAATCTCAGATTATTTTTGAAAGATCTTTGGCTATGAATTTTAAATCTTGTTGCAAAAAAATTGTATGTTTATGATTGGGGATTTGGTGAATGATTTGAGTTTTAAAATTGTTGATTGGTTTGCAGACGAGGGAGGAGCTAATGGATAAAATAAAACAATTATCTCAATGCAGAGAATCGCTTACAGGGGTAAGTTTGTAAATTCCTTCAACATAAATTTAGTTTTTTTTTTTTCAATTTTCTTTTCCTAAATTATCCTCTGTCTTTTTTTTTTAATTGATTTAATGGAATTTGTACAGGAAGTGGAGAATGTTCGTAATTACTACAATAATCAAAAAGCTTACAATATGAAGTTGAAAGCAATGAAAGAAGAGGTAAATATTCATCTCTATTTTTGGTAAAAATCTTTATTATTTTCTCATTTTTTTGAGATTTGTGATCGTGGTTGCGTAATTTGTTCACAAAATTGATCATTTGCTACACTAATCAAATGAAAGAACGTTTTAATTTAACTCGTGATAGCATATTATTATTCTATTTTTGAAGTTTTATTATTAGCTTACGACAAAAAGTGTATAATTTAACTCGTGATGGCATATTATTACTCTAGTTTTTGAGGTTCGCATATTAGTTTATGTCAAAAAGTGTAAAATGATAACTTAATTAATATTTTTTTTAAGTTTGCTTGTTAGCAATCAGGTTAACAACCTTCTTCCGTATCGTTAATTAAATACAGGTAACAAGAATGGTGAATTTCCAAGGGGGTGGTGTTAATTTAGGTCAACTTTACTCTAATCCTGGAATAGAGCCCAATCGTCAACAGCCGTTCATTATGGATCAGGTTGCTTCAAGATCAGAAGCTATTCATAGATTTCAATACCCATTGGGCCAGCTGCAACAGGCCCAACATTTGTACTCAAATGGGTTGGGCCCAGGCCCAATGGGCCTTCCTGATCTGAATGTTAAGGTGGAAGAGGCTTTCGCATTGGACCAGTTCGATATCGATAGAATGAATGTTGAAAGGAAGGCCCAATATGCTGAAGCTAGAAGGAAGAGGAGGATTAAAAGAATAGAAATTAAGAACTCATCTGGTTTTATTAGACCACCAAGAAGGAGATAGTAGGTAATTTTTGTATTTTTGATCCTTCCATAGAATGATAGTATTATTTTTTTGTGAGCG</genome_strand>
        <mrna_strand>TTCAGAACCGCCGCAAAATTCAACAAGAATGAAAAACAGCAAGCAGAACGAACTGTGTGATTTGTTTCGTAATCCATCTAAAGATGAAATTGAAGTAGTAAAAATTCTACTCGATCTCGAAAATCTAGTGAGAGAAAGACAATATTGTTCGGTAATTTGGGGTTCCAAGAAGAGGAGATCTAATCGACGAATCGATTCTTCTTCTTCTCCCGTCGTCAACTCATCAAGTAGTTCGAAAATCGATGGAAACGAAATTGAACCCAAAATTAAAGCTGAAGTTACTAGCCCTGCTAGCCCTGCTACTCCTCTTTCATTTTCCCCAAGTGAATCTGATGAAAAATCCAAACATTCTTCTCGCAGAAGCTATAAACGAAAG..................................................................................................................................................................................................................................................................................................................................................................ACGAGGGAGGAGCTAATGGATAAAATAAAACAATTATCTCAATGCAGAGAATCGCTTACAGGG..............................................................................................................GAAGTGGAGAATGTTCGTAATTACTACAATAATCAAAAAGCTTACAATATGAAGTTGAAAGCAATGAAAGAAGAG..........................................................................................................................................................................................................................................................................................................................................................................GTAACAAGAATGGTGAATTTCCAAGGGGGTGGTGTTAATTTAGGTCAACTTTACTCTAATCCTGGAATAGAGCCCAATCGTCAACAGCCGTTCATTATGGATCAGGTTGCTTCAAGATCAGAAGCTATTCATAGATTTCAATACCCATTGGGCCAGCTGCAACAGGCCCAACATTTGTACTCAAATGGGTTGGGCCCAGGCCCAATGGGCCTTCCTGATCTGAATGTTAAGGTGGAAGAGGCTTTCGCATTGGACCAGTTCGATATCGATAGAATGAATGTTGAAAGGAAGGCCCAATATGCTGAAGCTAGAAGGAAGAGGAGGATTAAAAGAATAGAAATTAAGAATTCATCTGGTTTTATTAGACCACCAAGAAGGACATAGTAGGTAATTTTTGTATTTTTGATCCTTCCATAGAATGATAGTATTATTTTTTTGTGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321881" ref_strand="-" ref_description="SGN-U321881        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, ; expression supported by MPSS | chr1:6935318-6936656 FORWARD | Aliases: T20H2.23, T20H2_23(evalue: 3e-18, score=89.7) genbank/nr: Rap8,(evalue: 1e-17, score=94)">
      <seq>cgattgggtaccgggccccccccttcacacttcacatttttacagctgattttttcgaattgaatcctgaaaatgtcgtctgaagactcaaagccagtgaggaaagtggaaagtgacgacggagaaagcattgggtctctttttaacagcaaaaagaaacctaacaataatgccgcttcaaaatctcagcctctcaaaaaagctaagattaagaaagaagaaaaagatgatgatttcgaagaacccatttcgaaaaagagtccaaaaattgttaagcccaagaaggaagaaccttcacccgtgtcaaagaaaagttcgagtagaactgataaaaaagttgtaaagaaagaggaagaggataagaagaaaggaaccaaaaatggagacaccgttgtgaagaagaaggaaaagaaagtttatgatttgcctggacagaagagagacgctcctgaggaaagagaccctttaaggattttctatgaatccttgtatcagcaagtgccagaaagtgaactagcagctatttggatgatggagtcaggtttgcttccaaaggacttggcgaagaaagtttttgagaagaaacaaaagaaggcccagcagctaaagcttggttcacctctgaaaacggttgtgactgtgaaaaagaccacggagtctgttactattaagaagacaacatcctcgtcaaccacgccatcaacacagaaaaagaaaacaccagattctggaaaaacggaatcaatgcagcggtcaaagaaacggaagcttaaggatgattcttctgaagaagactcagatgatggtttcattgcaactcttaaaagcacaaagagacagaaagcctcttgatgtttctaatggcttagtgaaattgtagatgagaaattaaatactctgttacatgcatttcaatttctccattatgtaaaagttgacctttgttctctcattttctccattgtgtttttccaggctctaaactttgaatacaattaaaaaaaaatgtatctcaaaaatcattcattgcccttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="65037" stop="61508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64736" g_stop="64425" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="333" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64424" i_stop="64346" i_length="79">
            <donor d_prob="0.467" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64345" g_stop="64223" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="456" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64222" i_stop="64143" i_length="80">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64142" g_stop="64072" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="527" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64071" i_stop="62321" i_length="1751">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62320" g_stop="61808" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="1040" r_length="513" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-U321881" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1019</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321881" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64736" e_stop="64425"/>
          <exon e_start="64345" e_stop="64223"/>
          <exon e_start="64142" e_stop="64072"/>
          <exon e_start="62320" e_stop="61808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCACACTTCACATTTTTACAGCTGATTTTTTCGAATTGAATCCTGAAAATGTCGTCTGAAGACTCAAAGCCAGTGAGGAAAGTGGAAAGTGACGACGGAGAAAGCATTGGGTCTCTTTTTAACAGCAAAAAGAAACCTAACAATAATGCCGCTTCAAAATCTCAGCCTCTCAAAAAAGCTAAGATTAAGAAAGAAGAAAAAGATGATGATTTCGAAGAACCCATTTCGAAAAAGAGTCCAAAAATTGTTAAGCCCAAGAAGGAAGAACCTTCACCCGTGTCAAAGAAAAGTTCGAGTAGAACTGATAAAGTTGGTATTTTTATTTGTGCATTTTTTGTTATTTTACTGTTTGATTTGTTGGTTTTTTAATTGGGTTTTTTGTGTGTAGAAAGTTGTAAAGAAAGAGGAAGAGGATAAGAAGAAAGGAACCAAAAATGGAGACACCGTTGTGAAGAAGAAGGAAAAGAAAGTTTATGATTTGCCTGGACAGAAGAGAGACGCTCCTGAGGAAGTATGTTCCAAATTTGCATGTTAAAAAAAACATTTTTTATGGTTTCAATCTGATCTAATGTTATATTTTTTGATTTTCAGAGAGACCCTTTAAGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTGGTATAACATTCTACCTTTTAAATGATTTTGAATAAGTTATTCTTGGGTAACTCTCTTGTCGTTAGTGTTTTTGAGTATCGTGATGAAGCTGTCTCTATCTTCTTTGAGTTGGTGTTGGTTGAAAAAAATGAACCTTGAATATTATTATGTTCTTAAAGGTCAAATTTTGTTCTTGTCCTAACAGTGTGTGTGTTATCCACCTGGTTGATGCTTCTGTATTAGCTCATGCTTTCATTTAGCGTTCACTTTGTCGAATGAGTAACTATTCTTAGTCTAGTTGTTTAGATGTGTTCATTTTCAAACTGAAAGAAGAGTAGGGGTAAGAAACTTCTGTTTGTATCTGGGTGCCCCTTAGATGCATAGTGTATTTTTGCGTATTGTACAACAGATAGTGAAATATGAGGTGTGTTGCTTGAATGTCAACGTGTGTGGAAGAGCAAGTTGGCTGGAAACAGCTAAAGAAAGCTTGTGAAGTAAGCAGTTCTATGTGAAAAGAATAGCCCACACTCGTAAACTTATATGTCATTTTTTCGTCCCTTTTTTTTTAGTAAAGAAGCATCAGCATGATAGAAGTTGCATGCCTACAACTGAGATGCTTAGTGAAGTTGCTAATTGAGTAAGTATCCATTGGACAAGGAAATCTGTATCTTGACTTGGCCCTTTTCGCCCAGTTAAGTACAATACATATTTGGCCACCTTAGTCGTAATCTAAGAGGTTAAGCTTACTATGATCATCTAATGCGCTACTTTAGATTTGTTATAGGAAAAAATCTACTTTAGTTTGAATCTGCAGAAATCATCTTTCAAGTGTTTATTTGAACATAAGAAAAAATGAAATTATAAGTATATAAGCTTTGTTATAACTTCATTAAAACTTCCGTCTGGAATGAGAAAATGGATTGTTTCAACCCTTTGACACTATATGATGAGTTCAGCTGACTTCTGACTGAAATTGTGACATATCTAAGGTGAAAACTTTTCTGGTAGTGCATTTTTCCACTTATTGACTATGGTTTGATATCATCCTTATGCAAAGCACTGTGTCCCTGGGCACAAGCTTTTACATTGAGTGCTTGGGGGATTAAGTTAAAGTTGTCACCAAGAATAGTTTGTGATACTAATGAGTGTTGTTAGTGGTTATAATGCAAATTAATATGCGTGTCTGAAGCTTAAGATGTGAGTTTAGACTGTTTAGTCAGCTCATTTGACATGATTTTGATGAAATATTGGTGCAATTACTTCAACCAAAATCCCAGGGCTTACTTATGACTGTTCTGTTGCAGCACATGCGATGAAACTATTTAGCCCATTCTTTGCATTATCGTGCTTAGACGTCACTCAATTTCTTGAGATCTGCTGTGGATTGATGCTAAAAACTATGTCTAATGTTGCTCATCTAATCCCTGATACAAATTGTCACTCTTCCCTTTCTGTCTCACTAAATCCACCCCGATCACCAAACAAGCATTAGAACTAACATAAATTGAAGTAGTTTCTCTAATGAATTTGGCAGCTGTCTCAGTCTATAAATGTTAATAAAGCTGGCCAAACAATGTCTATGCATGAATGGTTCCTCCTCATCAACCCTTTTGACCATCACTGATGCTACAGAAAGGATCTCGATGGATCAAAATGTCTGCTTGCAACTGTTAACAACCAAATCCAGAGTTGTTCATGATGATTATAAAAACTACAACTGTCCCTTGCAGTTGGATTCAAGTAATCATATCCTGATACTGTTGTTCTTGCAGGATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTGTGAAAAAGACCACGGAGTCTGTTACTATTAAGAAGACAACATCCTCGTCAACCACGCCATCAACACAGAAAAAGAAAACACCAGATTCTGGAAAAACGGAATCAATGCAGCGGTCAAAGAAACGGAAGCTTAAGGATGATTCTTCTGAAGAAGACTCAGATGATGGTTTCATTGCAACTCTTAAAAGCACAAAGAGACAGAAAGCCTCTTGATGTTTCTAATGGCTTAGTGAAATTGTAGATGAGAAATTAAATACTCTGTTACATGCATTTCAATTTCTCCATTATGTAAAAGTTGACCTTTGTTCTCTCATTTTCTCCATTGTGTTTTTCCAGGCTCTAAACTTTGAATACAATTAAAAAAAAATGTATCTCAAACTTCATTCATTGCCCTTAAGAAA</genome_strand>
        <mrna_strand>CCTTCACACTTCACATTTTTACAGCTGATTTTTTCGAATTGAATCCTGAAAATGTCGTCTGAAGACTCAAAGCCAGTGAGGAAAGTGGAAAGTGACGACGGAGAAAGCATTGGGTCTCTTTTTAACAGCAAAAAGAAACCTAACAATAATGCCGCTTCAAAATCTCAGCCTCTCAAAAAAGCTAAGATTAAGAAAGAAGAAAAAGATGATGATTTCGAAGAACCCATTTCGAAAAAGAGTCCAAAAATTGTTAAGCCCAAGAAGGAAGAACCTTCACCCGTGTCAAAGAAAAGTTCGAGTAGAACTGATAAA...............................................................................AAAGTTGTAAAGAAAGAGGAAGAGGATAAGAAGAAAGGAACCAAAAATGGAGACACCGTTGTGAAGAAGAAGGAAAAGAAAGTTTATGATTTGCCTGGACAGAAGAGAGACGCTCCTGAGGAA................................................................................AGAGACCCTTTAAGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTGTGAAAAAGACCACGGAGTCTGTTACTATTAAGAAGACAACATCCTCGTCAACCACGCCATCAACACAGAAAAAGAAAACACCAGATTCTGGAAAAACGGAATCAATGCAGCGGTCAAAGAAACGGAAGCTTAAGGATGATTCTTCTGAAGAAGACTCAGATGATGGTTTCATTGCAACTCTTAAAAGCACAAAGAGACAGAAAGCCTCTTGATGTTTCTAATGGCTTAGTGAAATTGTAGATGAGAAATTAAATACTCTGTTACATGCATTTCAATTTCTCCATTATGTAAAAGTTGACCTTTGTTCTCTCATTTTCTCCATTGTGTTTTTCCAGGCTCTAAACTTTGAATACAATTAAAAAAAAATGTATCTCAAAAATCATTCATTGCCCTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341225" ref_strand="+" ref_description="SGN-U341225        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | cytomatrix protein-related, contains weak similarity to CAST1 (Rattus norvegicus) gi:22138113:gb:AAL07517 | chr1:6933022-6934993 FORWARD | Aliases: T20H2.28, T20H2_28(evalue: 7e-37, score=150) genbank/nr: gi|15223725|ref|NP_173427.1| expressed protein [Arabidopsis thaliana] gi|28392994|gb|AAO41932.1| unknown protein [Arabidopsis thaliana] gi|28827278|gb|AAO50483.1| unknown protein [Arabidopsis thaliana](evalue: 5e-35, score=150)">
      <seq>tccattgcgctctctctctttcaaactctaaaagtttcttcaatctgcaatggcgaagtccaaaaaaccaaaaaattcttgcgatagagaaaaatggaacaaagtgttcaatgctttatttcacatgttgacatcacagcagacgcagcttgaatcccttgcacaagagagaatgattcttgaagatcggataaaattacagaatgatcgatgggtatctgatattcatagatttcaagaacaaatttatgagatgaggaaaaactttacaattcaagagatggagcgcatgcttgaagttgcgaaatcggagtttgttgttggtttgaagcaacgagatgttgccgtgttccaaagaaagctcgaaaatgccgatggagaactggctgacttgagagaatggtttgactacctctctcagagatgctctgagccaaatgatgtaccaaatgctgcaacaaatgaaaagtccgatacaagaaagaatgcttgggaagatgaggtgaggaggcttaaaacagaaaatgagaagcttacttcagagaaaaattctgagatttctgccctcttggcagaatataatcttattaggaaccagatcaacaaactggggcacgacatgactgagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="73441" stop="70473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73141" g_stop="72889" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72888" i_stop="72784" i_length="105">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72783" g_stop="72672" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="365" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72671" i_stop="71171" i_length="1501">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71170" g_stop="71097" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="439" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71096" i_stop="70966" i_length="131">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70965" g_stop="70773" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="632" r_length="193" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-U341225" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73141" e_stop="72889"/>
          <exon e_start="72783" e_stop="72672"/>
          <exon e_start="71170" e_stop="71097"/>
          <exon e_start="70965" e_stop="70773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTGCGCTCTCTCTCTTTCAAACTCTAAAAGTTTCTTCAATCTGCAATGGCGAAGTCCAAAAAACCAAAAAATTCTTCCGATAGAGAAAAATGGAACAAAGTGTTCAATGCTTTAGTTCACATGTTGACATCACAGCAGACGCAGCTTGAATCCCTTGCAAAAGAGAGAATGATTCTTGAAGATCGGATAAAATTACAGAATGATCGATGGGTATCTGATATTCATAGATTTCAAGAACAAATTTATGAGGTTACTTTGATTTTCTTCTTGAATTTTGCATTTTTACTTATTTAGGGTTTTGATTGCTTGGAATTTTAGGGCTTTTGATTAAATTGGGTTCTTTTGCGTTTGCAGATGAGGAAAAACTTTACAATTCAAGAGATGGAGCGCATGCTTGAGGTTGCGAAATCGGAGTTTGTTGTTGGTTTGAAGCAACGAGATGTTGCCGTGTTCCAAAGAAAGCTCGGTGAGTTTATATTTGAAAAAGAAAAGAACTTTTTCTTGCCCTAAGCTTTGTTTGGTTTATACGAAATGATGGAAATTTGAGCAAATTGTGGACCTTTACTTGCCTTGCTGTTTATTTCCCGACTCGTTGAGTTTAAAATCAGGTAGGAAGTAGAGATTTCTTATTGCTATGCACAGGGACAGAGCCTGGTGGGAGCAAGGGGATTTATGCATATATAGCTCAGTAAATATTTTGGCTCCGCCACTAGCTATGTAGAGTTCAAAGACGATAAATATTAACTTTGAAGTTGTCCTTCTCTTCTCTTTCTTTACCTGATAAGGATGGTACTATTCATGATTACTGCCTTTGATAACTTTTATGAGCCTTATTTTGTGCTGGGGTGTCGCCACAAAGTACAGTGTCACTGCCTAAACAATATTGCTGTTTAAGATAATCAATTTGATAGTGGAGCTTGAAGTCTTGAACATACAATATCTTTTTCTTACTCAATATGGTTCTCTCAATATACTTTTATGAATCCAACCATGAATAAAGTTGCATAATTTATTTTCTTTTGATAGCTTAGAAATCTTCAAGGGCTAGTGGCACTCGTGTTAGTTAAATTGGGAGGGAATTGAAACAGTTATCTGTTACGTCTAGTGGCGCACGTGTCATATTAGTTGGAACGGAGTAGAAACAGTTACATGTCAGGGTTTCTATTAATCCACCCCATTTCCCATTAGATAAGTTAAATTCTTTCAATACACTTTTACGAACTTAATACTGAAATAAAGTACATCATAGCACTTCATTCAGTTTGGAGAAGTTTATAAAAGTCCTAAGGAAGCAGAATGGCATACAGTTCCCTGATTATATGCTAACTTTCTCCTTCTACAGACCTTGGAACAAGAGAAGGAAAAAGAATCTTGAACAGAGAAGATATGGTCTTTTATAGCGTTCGTGCTTTTTTTCCTGTCATCTGAGGAGTGAGGGAGGGAAGGAAAGAAGGAAGGAGAAAATAAAGGGAAGAGACCTCAGGGTGGTTTTTTTGGACATGAGTGGCTGAACTTTAATTCCGAGACTGAATAAAGGGCATGTTACCTCTTTTTTTTCCTCTAGTTGACTCACTTTCTCCAACTCACTCAATTTCACTTGTACACATTTCAACTCTTGTTCTAAAATTCTCTTTGCATCTCAGCTCAGGGCACACTGATATTTCTTTTCGTGCATCTTCAAGATTGTCAAAGTGGATCATTTAAATTAGCAATAATGGAGTTTCTGTGTGTAATCAAAAAATTATGCAACCACATATCCTCTACACACTCGAACACACTTCTTTATGTATAAAGTTATCAGTTCAGTTTTTATTGCAAGAGGCTATTTTAGACTTTCTTGCTCTTGAAAGATGGCTCCCCATCCCAGTGTATCAGTAGCCTTTATTGTTCAAGGATAGACATGATCTCTTAAGTTATATCATCCCAGCATTCAATTTGGTTACTTACTATTCACCTAAAAAGTGCAGAAAATGCAGATGGTGAACTGGCTGACTTCAGAGAATGGTTTGACTACCTCTCTCAGAGATGCTCTGAGCCAAATGTATGTTGTTTCAATTGCCTTTTCTATTATGAATGTTGTTTCTCATCGCCTTTCTGAGTTTTTAGTTTATTATTTGCGCTAGTAATAAAAAACTAGAAGATGAGATGTATGAATGTTCATTTGATCCACAGGATGTACCAAATGCTGCAACAAATGAAAAGTCGGAGACAAGAAAGAAGGCTTGGGAAGATGAGGTGAGGAGGCTTAAAACAGAAAATGAGAAGCTTACTTCAGAGAAAAATTCTGAGATTTCTGCCCTCTTGGCAGAAAAGAATTTTATTTGGAACCAGTTCAACAAACTGGAGCACGACATGACTGAGCAAT</genome_strand>
        <mrna_strand>TCCATTGCGCTCTCTCTCTTTCAAACTCTAAAAGTTTCTTCAATCTGCAATGGCGAAGTCCAAAAAACCAAAAAATTCTTGCGATAGAGAAAAATGGAACAAAGTGTTCAATGCTTTATTTCACATGTTGACATCACAGCAGACGCAGCTTGAATCCCTTGCACAAGAGAGAATGATTCTTGAAGATCGGATAAAATTACAGAATGATCGATGGGTATCTGATATTCATAGATTTCAAGAACAAATTTATGAG.........................................................................................................ATGAGGAAAAACTTTACAATTCAAGAGATGGAGCGCATGCTTGAAGTTGCGAAATCGGAGTTTGTTGTTGGTTTGAAGCAACGAGATGTTGCCGTGTTCCAAAGAAAGCTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGCCGATGGAGAACTGGCTGACTTGAGAGAATGGTTTGACTACCTCTCTCAGAGATGCTCTGAGCCAAAT...................................................................................................................................GATGTACCAAATGCTGCAACAAATGAAAAGTCCGATACAAGAAAGAATGCTTGGGAAGATGAGGTGAGGAGGCTTAAAACAGAAAATGAGAAGCTTACTTCAGAGAAAAATTCTGAGATTTCTGCCCTCTTGGCAGAATATAATCTTATTAGGAACCAGATCAACAAACTGGGGCACGACATGACTGAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317765" ref_strand="+" ref_description="SGN-U317765        Tomato 200607 #1 [19 ESTs aligned] arabidopsis/peptide: | Symbol: None | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam profile PF04853: Plant neutral invertase | chr4:16609344-16612912 REVERSE | Aliases: F11I11.100, F11I11_100(evalue: 0, score=930) genbank/nr: beta-fructofuranosidase(evalue: 0, score=930)">
      <seq>ggatatttcatggttggtgtcttcctcggaaaccttagatctcactgaagttcgccgtagccgccgccgccgccgatactttgagatctttggattcgatttcttattgtctaggacttttggaagtattggaagatgcctagccctgtggatgtgtctcaaaatgggaatgcaagacacgcggaagctgctccatccttgtttgaaatcgaggaagatttggctagattgctggaaaggccaagacaagttaatattgaaaggaagaggtcgttcgatgaaagatctttcagcgaaatgtcaatgactcattcaccgccacgtcaggtatacaaaaattcggagaactcttctcgtgtttttgataatatggttggagtgtattcaccaggaaggtggtccggcatacacacacccagatcaaccttcggatatgagccgcatcctataatcggcgaagcatgggaagctttgaggcgttctattgttaacttccgagatcaacctgtgggaactattgctgctatagataattctgctgaggaacttaactatgatcaggtttttgtcagagattttgtccccagcgctttggcattcttgatgaatggtgaacctgatatagtaaagaattttcttttgaaaaccttgcgcctccaatctcgggagaagaagatagaccagttcaagttgggggatggagttatgcctgcaagttttaaagtgtctcatgatcctgttaggaactatgagactataactgctgatttcggtgaaagtgctattggtagagttgctcctgttgattcagggttctggtggattatactacttcgtgcatacacaaagtctacaggggacacttctttggctgagatgccagaatgccaaaggggtataaggctgattcttgaattatgtctctctgaaggttttgatacattcccaaccctgctgtgcgctgatggatgctctatgattgatcgcagaatgggtgtctatggctatcctattgaaatacaagcacttttctttatggccttaagatgtgccttgtttctccttaaacacgacgaagaaaaccaagagtgttgtgatgcaataattaaacgacttcatgctttaagctttcacatgagaagttactattggctcgacataaaacaactgaatgatatataccgctacaaaacagaagagtactctcacactgcagtaaacaagtttaatgtgatgccagattcccttccggagtgggtttttgatttcatgccaactcgtggtggttacttcatcggaaatgttagtcctgctcacatggacttccgttggttttgtttgggtaactgtatttcaatcttgtcatctttggctacacctgagcaagcttccgccataatggatctcgttgaatcaagatggcaagagctagttggagaaatgccgctgaaaatctgttatcctgctatggaaggccatgaatggagaattgtaacaggatgcgaccctaaaaacactagttggagttaccacaatggtggcacttggccagttcttctgtggctccttactgcagcagctatcaagactggtcgaccccaaatagcacgacgggccattgaactagctgaatcgcgtttactaaaagatagctggccagagtattacgacggaaagcttggtcgatttattggaaagcaggcgcgtaagttccagacatggtccattgctggttacttggtagctagaatgatgctggaagatccatctcatttgggtatgatatcacttgaagaagataaacagatgaagcctaccatgaaaagatctgcttcttggacttgttaatatccttgtacacaaattttctttcgaatgccatgctttttttttctctctttttgcaattcgtaaacactctcttttagtttgtcgcaaaaatgttgaattttttatgaattggctacgagattgtacacttcactcctatttttttccagttaatctggttttcgtctaagagtgttcgtcgaatgccaatagatgtgtgttgttagctgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="75688" stop="82142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75987" g_stop="76074" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76075" i_stop="76726" i_length="652">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.522" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76727" g_stop="77202" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="561" r_length="476" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77203" i_stop="77924" i_length="722">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77925" g_stop="78356" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="993" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78357" i_stop="79190" i_length="834">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.661" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79191" g_stop="79749" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="994" r_stop="1552" r_length="559" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80135" g_stop="80603" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1553" r_stop="2021" r_length="469" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80604" i_stop="81802" i_length="1199">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81803" g_stop="81848" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="2022" r_stop="2067" r_length="46" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-U317765" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2070</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75987" e_stop="76074"/>
          <exon e_start="76727" e_stop="77202"/>
          <exon e_start="77925" e_stop="78356"/>
          <exon e_start="79191" e_stop="79749"/>
          <exon e_start="80135" e_stop="80603"/>
          <exon e_start="81803" e_stop="81848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGTTCATGGTTGGTGTCTTCCTCGGAAACCTTAGATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGCCGCCGATACTTTGAGGTTGTTATTACCAGCTCCTAGGTTATTTATTTTGTGTTTTATCTATGTTTCTTAATTTTTTCATTTTTCTGTTTGTTTCGATGATATTAAGGTTTTTCTGCATTTGAGATTTTTCATTTTGTGCTGGTTTCAGTATTTGCTGGATTGATCAAAGTATGAATTAAAAAGAAAGAAGTAAATTGATAAAGTAAAAGAAGATCTAACAGTAGTTTGACTTTGATTGTTTAATTAAGTTAATGATTATGATTAATTAATTAAAATTGTGTGTAAGAACTTGCTCTAATTTTGCTCAAGTTGAATTAAACCAAACTTATAGTGAATAAATATTGCTTGTAAATGAAAAAAATGTTGATTTTCTGATCTGGTGTATATTTCAATTTAATGTATTCCAAGTATAAGAGGCATTAATTGCACTCTTTATTACAAGTTGATTGTATTCTTTATTATGTAAGTTCTTGTTTGATGTAGCTCGGACTCTCCAAAAATGTTGCTGCAGCCCATTGGATCCTCCAAAAGAGGAACCTTTCGGAGGATCCGACACACACTTGTTTGATGTTTTTGGAGAGTCTGAGCTATATAGCTTTGTGTTTACTAAGCTTCTGTTACGGGGGCGAATTCTTAAAAGTTTTCTTATTTCATTGGTGATATGCAGATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAGGTAAATGCTTATTGTTCTAGTTCTTAGATGGATACAAGTTTGTCTTTATGTATTTTGTTGTGATTTAATATCCCGTGAAGCAGGTCGATTATGTGCTTCAATGGAACTTGTTTTGACGAGTGTCCTCTGATAAGTTGTACTAGATGTTTCTTTACGTAATAAATAGAAAATGGTGAATTCCTATGTCCACACTATAGTTATCAGTGCAACTGATTGGTTTGCGGTTGACTGATAAGATGAAGAGGGGGTATAGTTTGCAGGCCCAGCTATTTCAATGAATATGAGCTAAGCTTGACCGACTGAATTGTTCAAATAGTTTACATAAAAACTTATGTAGAACCAGTGTTGTCAAAGGCGCATTTAAGCCATGAAGCGGGACTCGAAATGTGTCTGAGCACTTTTTCTCGCTTATTGTGCATTCAGCGTCGTTAGCAAGGTTCTCTAAGGCATACTTATCATTGTGAATTAACCTCTTATGACGAGGCGGCACTAAACAATTGATATTTCACTTATTTGTTATTCATGCTTATTTGCGCTTAAAACCCCAATGAACCTTTGAGCGTTTTTGCGTCTGATCTAGAACCAGATTCTAGATATTCTCCAGAGGTAAAACCAGCTTACTGATGGGCCCAGCTTTCCGAAATCCTTTCACAGTCGTCTTTCTCTATGTACATGACAACCATTCTACTTGCAATTTGCAGTTCTGACTTAAAATTTGGCAGGTTTTTGTCAGAGATTTTGTCCCCAGCGCTTTGGCATTCTTGATGAATGGTGAACCTGATATAGTAAAGAATTTTCTTTTGAAAACCTTGCGCCTCCAATCTCGGGAGAAGAAGATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGACACTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATGGTCAGTCTGATGTACTACTATCCGCTCTTTATCGGTTTTTTAAACTAGATCTGACTTATGCTCATGCCTTGTTTTCTGTTTATTACATGCTTGATTTTCTACTTAATATTACATGATGACAGTGATGACAAGATATGAGATAGCTATCAACTGTTACTTCTAGAATAGTATAATTGACCAAATGCATATTTATAATCTGTCAAGATTTGGTTAGCCTACATACTTATTACGTGCTTGATTTTCTATTTCTCGTACATAATGACAGTGATTCTGATTCTGACTTAGGTAAGTTAAGCTTCAAATAGGAGTTCTGCTGAGATTTCACATCATTTGCTTGAAGTTAAGAAATAGGCAGTTGAGCTTTGTCTTGCTTTTTGGCGGGATTAGGCTTGGTGGGAGTCTGGTAGCACTGTGTCTGTCTTAGTATTAGTCGTATACACGTACTTTCTTGCGTTTGACCATCTGTTTTCTATTGTGTTTCAGTTACCGCTTGATTTCGATGTGCTATGTAGTGCTTTCCTTATTAATTGACGTGTTTTCTTCACTGCTGTATCTCCTTTTTCATAACTTCTTTGATGTGCTGCACTTTGAGCTGAGGGTCTTTCGGAAACAACCTCTCTACCTCCACGATGTAGGGGTAAGGTCTGTGTATACACTACCCTCCTGAGACTCCACTTGTGGGATTACACTGGACCAATAAGAAGACTTGTACTCTTTTCTCATATTCTCAATAAATTTGTGGGCATATTAAAATTCTCAATTATTGCAGTTCAACTTCCTTTAAAATATCCACTACTCACATGTCATAAGCACTTTGTTTCATATTGTTCCCAGGGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAGGTTATAGTTTCTTCCTTCTTATATAACACCAAAAGTACTTCATTCTATTTAGCAATAGTTTGCTATGTCATCTCGCATCACGATGACCAGTATATCTGTCTACTTTTTGGTAGCCTATCATGTCTCCCTATATTCCATTTTATGCATCAATCTTGCTCTTTTAGTCTATTCCGAAAAGAATGATGCCTTTCTATATTTAAAAACCCTTAGTGATACGGTTTATAGCCACAAAAAATGTCATGACATGTTTAAGATCACGTGTTGAACTCTGTGCTCAGTCACACTTTCACATAAAATGAAACCGAGGGAGTACTCTTTTCATGTTCTGCACCGTGACATTTACAAACTTATGCTAATACTGATTTGCCTGGTTTTTTGTGTCTAGTTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTTTCTCTCTTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTTTATGAATTGGCTACGAGATTGTACACTTCACTCCTATTTTTTTCCAGTTAATCTGGTTTTCGTCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGTTATCCCTGGATAGCGCCTTGCCGGACCGCACCACCATCATGAATTTCCGCCACCTGCTGGAGCAGCATCAACTGGCCCGCCAATTGTTCAAGACCATCAATCGCTGGCTGGCCGAAGCAGGCGTCATGATGACTCAAGGCACCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTGGCATGAAGGCCCACATTGGTGTCGATGCCAAGAGTGGCCTGACCCACAGCCTGGTCACCACCGCGGCCAACGAGCATGACCTCAATCAGCTGGGTAATCTGCTGCATGGAGAGGAGCAATTTGTCTCAGCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCCGAGGTGGATGTGGACTGGCTGATCGCCGAGCGCCCCGGCAAGGTAAGAACCTTGAAACAGCATCCACGCAAGAACAAAACGGCCATCAACATCGAATACATGAAAGCCAGCATCCGGGCCAGGGTGGAGCACCCATTTCGCATCATCAAGCGACAGTTCGGCTTCGTGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGAGTGTTCGTCGAATGCCAATAGATGTGTGTTGTTAGCTGATCTACT</genome_strand>
        <mrna_strand>GGATATTTCATGGTTGGTGTCTTCCTCGGAAACCTTAGATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGCC---GATACTTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGTCAGAGATTTTGTCCCCAGCGCTTTGGCATTCTTGATGAATGGTGAACCTGATATAGTAAAGAATTTTCTTTTGAAAACCTTGCGCCTCCAATCTCGGGAGAAGAAGATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGACACTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTTTCTCTCTTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTTTATGAATTGGCTACGAGATTGTACACTTCACTCCTATTTTTTTCCAGTTAATCTGGTTTTCGTCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTCGTCGAATGCCAATAGATGTGTGTTGTTAGCTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325220" ref_strand="+" ref_description="SGN-U325220        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | transcriptional co-activator-related, contains weak similarity to Cofactor required for Sp1 transcriptional activation subunit 9 (Transcriptional co-activator CRSP33) (RNA polymerase transcriptional regulation mediator subunit 7 homolog) (hMED7) (Activator-recruited cofactor 34 kDa component) (ARC34) (Swiss-Prot:O43513) (Homo sapiens) | chr5:767488-768856 REVERSE | Aliases: F15A17.250, F15A17_250(evalue: 2e-72, score=269) genbank/nr: gi|21618057|gb|AAM67107.1| transcription co-activator-like protein [Arabidopsis thaliana](evalue: 4e-71, score=271)">
      <seq>cgctactctgtcgccggttgccgccggttgtcgctgctcgcacgtcttctctttttcagctgatataagcccaaaattgtagcttatgtttggactaaactacaaattggctaaggtgctcccatcgacaatacactattggagagcgggtgcagaggtctgatatttctcgttcaagtgtcgactcaacgccgagagaagtcaccttttttggttgacaaaaacctcgaaactgccctttggctcatcttaatgtaactattattgtgacagagaagataagaacattgtttttgtgaaatcacatgtcgacagcaacatacccaccaccccctccgttttataggctgtacaaggactatcttcaagaccccaagtctgctccggaacctccccctccaattgagggcacctatgtcctctttggtagcaactacactactgatgatgtactcccaaatttggaagagcagggtgtgcgtcagttatacccaaaagggcctaatgttgatttcaagaaagaactaagagcacttaacagagaattgcagctacatatattggagcttgctgatgttcttgtagagcgcccttcgcaatatgccaggagagtggaagagatatctctgatattcaagaacttgcaccacctactcaattctctgcgtcctcaccaggctcgagccacacttatccacattctagaacttcagatacaacgacgtaaacaagcaatagaggatatcaagcggagaagggaagaagctcagaagcttctaaaggaggcacttggtacccttgagggacagtagaatgctctttagactttacacacacagctggcagaattagtgtctagaatgctttgaaattacagtatagaaatcattcagtcctaatgtgaaattttctttattcacttgcctgaattttatacagtgacaatgcttttatgtggcaagtgtcacaatccagtgccaaaaattcgacgtttcagtcatcgaggcaatacagagtttcgattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="86979" stop="81985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86681" g_stop="86623" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86622" i_stop="84848" i_length="1775">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84847" g_stop="84467" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="440" r_length="381" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84466" i_stop="83866" i_length="601">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83865" g_stop="83796" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="510" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83795" i_stop="83273" i_length="523">
            <donor d_prob="0.462" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83272" g_stop="83106" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="677" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83105" i_stop="82999" i_length="107">
            <donor d_prob="0.585" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82998" g_stop="82925" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="751" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82924" i_stop="82562" i_length="363">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82561" g_stop="82285" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="1028" r_length="277" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-U325220" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1028</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86681" e_stop="86623"/>
          <exon e_start="84847" e_stop="84467"/>
          <exon e_start="83865" e_stop="83796"/>
          <exon e_start="83272" e_stop="83106"/>
          <exon e_start="82998" e_stop="82925"/>
          <exon e_start="82561" e_stop="82285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTACTCTGTCGCCGGTTGCCGCCGGTTGTCGCTGCTCGCACGTCTTCTCTTTTTCAGGTGAGTTCGATTATTGTGTGTTTTAATTCTTTCCAAAAGGAACAATTGAAGATGAAGAAAAATCTGTTGAATTTTTAACTTGAAAAGAACTGAACTATACACACCATAATTGAATCCATACTAGTTCGAAGCGTGATTTATGCTAGTTGAAGATGTGATTTGGATTATCATTATGATAATCATTTCTCTATATTTGAAGTTTTTGAACTCAATGTTCTTAGGTTAATTAGATATTTATGAGTCAATTGATTTTTGAATGAACCATTGCATAAAAATCAATTGTCGATGGTTACTTGTTAGGTTAAATAGGTTTCTGCTGCTGATTGTTTTTGTCGATCTTTAAGTTTTATATAGCTGTACTTTGAGATAGAAGGAAGGTGTTTGAGCTATGAGAAATTCATTCAGCTTGTAAGTTTTTGATTTGCTTCACCTGGAACTCAATTCGAAGCTAGCCTAACTTATTTTTCTGTTTATTTGTCCCTGGGCACATAAGTAGAAAGTTTGAGTATCTTCTCTTTACAAGAAAAACCTGAGTTATGTGGCACTTTAGACTACAAATTGTATTTTATACCTGACAGATACTATTGTAGGGCATATAATTTAGTTAGATTCGTTTTTGGTTCTGCTTTGGGCTGTATTTCCTTGAGACGAGGGTCGGGAACCACCTCTCTAACTCTGAGGTAGGGGTAAGGTTTGCGCGCTCTAAACCTTTGGGTATTTTGTTGTTGTAGATTTTATTGTAGTGCATATGGTATTACGTCAACATATTGAGTGTGTTCCCATAGTGGGGTCTGGGGAGGGCACTAACCTTCTTCTCCCACATAAAGTGCTACAACACACTGCTACTTACAAGACTTCTACCCTAGTCCTCGACCTCGAAACTTTCCTATATAGGGTCATATTCCTAGTAAGTTGAAGTTGTGTCATGTAGGGTTGAATCACCTTCCCCTTGTTCTTTTATGACCTATCCCTGCCTTTCTAACTCCTGTTCCGCCAATATTGGACTAGCACAGTTACCATTTAATCATTGAACAGTGAAATAGCCTTTCCATGAGAAATCTTTGAAACAGAAAAAATGAACTGCTTAAAATCATGGTGAGAATTTCGATGCACCAAAAGAAAAGTATCATGACAAAACCGAGCAGTCACTTAACACTAGAAAGGATCACAAACTACTCTAATGACAGTTACATATGTAACATGGGTATCTTCTCTGGTACTCGAATGAAATGAACATTCTTCTAGTTTTAAGTATACATTTAGTCTAAGTTGCTCTGATTCTGCACTTTTGGTGCCACACCCGTGTCGACACGACATGGGTGTGGGATCTTTGTCCGATTTGGTCAACTGATTTTGGGTACTTTGACCAAAATATATGGGGAAAGTCTTGACAGTTCTAAGATTTCTGTAATCAATACAAAAGCTAAGGTGAATTGAAGAAAATGGAATACCTTTTATATAGAAATTTCTTTGTCTTTCCTTTTCGTTTAATCTCCTTCCAAGATTCTCCTCAAGTTCTCCACATAATATAGGTTTTATAACTCTATTTTTAGGCGAATCCCTGCACCCGTATCCATACATAGATTCATATCCCCAAATCTTAAATTTAGATCTTGAAGGATCCAACCTCTGGATCCACACCCGTATCAGACACCCGCACCCGAGTTCGAGCAACTTAGCATTTAGTTCTCCTTTCTTCAGATTGTATATTATAAACTTGTTTTGATACTTTGACCCCTCTGACTTTTGAAATTGTTGCTTTTTATGTACTGCAGCTGATATAAGCCCAAAATTGTAGCTTATGTTTGGACTAAACTACAAATTGGTTAAGGTGCTCCCATCGACAATACACTATTGGAGAACGAGTGCAGAGGTCTGATATTTCTCGTTCAAGTGTCGACTCAACGCCGAGAGAAGTCGCCTTTTTTGGTTGAGAAAAACCTCGAAACTGCCCTTTGGCTCATCTTAATGTAACTATTATTGTGACAGAGAAGATAAGAACATTGTTTTTGTGAAATCAGATGTCGACAGCAACATACCCACCACCCCCTCCGTTTTATAGGCTGTACAAGGACTATCTTCAAGACCCCAAGTCTGCTCCGGAACCTCCCCCTCCAATTGAGGGCACCTATGTCCTCTTTGGTAGCAACTACACTGTAAAGTCTCTGACCCGTTCTTCTACTCCCTTTTGAAATCCACCCCCAAATGGGGAAAAGGGGTGAAAAAGTCATGATACCCAATTGCTTACTTGTGCTTAATGTGGATGTATGAATGTATAAGGTGTCTTTGAGGCCCATTCAAGTTACTGGGTAGCTCTTTACCTCGAAAGATTTGCTTTTACTTTAAAGATTGAACCATGTTCTCAGTTTCTTCACTTTCATATACTTTATATTGCTTTTGGGGTAAAGGTATGGATTTAATTCAATGCGCGCTTAAAAAAATACAAAAGATTAGAGGGGGAAAATGTCTGATGCTAAGGTGAGGTTCAGTGAGATATTCAACAATGATTTAGATTTTATCTATTCTGAAATATGAATGAGGTTTCCATTAACATTCTCACCTTTATCTTATGTCATCTTGAGCTGCAACGCATCAAGAATCTTTATTCTGGTCACTCCTCTCAGTCCTCTGTGTTCTTGTCTTTTGTGAATTTTGTTTGTCAGTTGTGTTGCTGAAATTAAGTTGTCGTTGTGGTTTTTATTAGATAGCTATGTGCAAGTTTGCTCATTATTTATTTTGGCATTACCGTTTGCGCAGACTGATGATGTACTCCCAAATTTGGAAGAGCAGGGTGTGCGTCAGTTATACCCAAAAGGGCCTAATGTTGGTAATGTTTGCAGCTATTCTCAAAAAGCCGTATTTGTTCCTACTGTGATATGTAACATGCATATCTTTTTTAAACATTTATGGTTAAAAGAATTTAAGTATGTGGATACACACATTTGTACCTTATATATCATCCTGCATTTTCGATATGAATCTGCATGGAACATGACACTCGTTTTTGTTTCCTTATCGTAAGTTCCAAGTAAATATCCTCTACAAGGTCAATCGATATGTCTAATCATTTCTGTTCTCTTTCTCTAAGCCAGTGACCAGAATAAATAAAAGGGAAATAGATATAAAGTTTGAGCCCTTTAGGTTATTCAAAGTCTTAGACAAAAGATTGCAAATCAAGTATCCTATGCATTGCAAAAGTTAATTGCAGAATCAATTCCATAGTTGAAACGATGATGTCCCCTTTATTGGGTGCTGCTGCATATGGGATGCTTCCAGAGATAAATTTAGGTGCTATTTTGTTGCTTCTCAGAAAAAATTATTCATTCTTATTCTGCTGATTCATGTTACAGATTTCAAGAAAGAACTAAGAGCACTTAACAGAGAATTGCAGCTACATATATTGGAGCTTGCTGATGTTCTTGTAGAGCGCCCTTCGCAATATGCCAGGAGAGTGGAAGAGATATCTCTGATATTCAAGAACTTGCACCACCTACTCAATTCTCTGCGTCCTCACCAGGTGATCAATTGGTGAAATCTAAGTGTCTAAATATTTCTGGGTTTTAGCATGGCTATAGAAGATAGATGATCTCAATAATCATTTACCTTTGTTTCTTTCTTTTACAGGCTCGAGCCACACTTATCCACATTCTAGAACTTCAGATACAACGACGTAAACAAGCAATAGAGGATATCAAGCGGTATGATGTTGTTTGTATGTTCTTTTTATCATATATATTTAGCTTCTTCCTTCATTAGATTTAGATGAAAAATCGTGAGTTTTCTAGAAGAGTTCAAGTGTGCCTCATCAAACAGTTGCAAGTGAAAGAATTCAGTTTCCCTTTAAGCTGCTTCAGTCACTTTCAGCTACACAGATTATATGTAATTACTATATCAAACTACCTCTCAAAATGAAAAGAGAGATGTATTTACCGTTAACTCTAATAATGTGCATAAATTCACAAGTTGTTGGAGTTGAGGCAGACTGTTTAATTCTCTCTTTATCTTTTTATCCTGGTTACTATGATTTTAGTCATGATTTTGGTTTCTATTTGCTTGTATAGGAGAAGGGAAGAAGCTCAGAAGCTTCTAAAGGAGGCACTTGGTACCCTTGAGGGACAGTAGAATGCTCTTTAGACTTTACACACACAGCTGGCAGAATTAGTGTCTAGAATGCTTTGAAATTACAGTATAGAAATCATTCAGTCCTAATGTGAAATTTTCTTTATTCACTTGCCTGAATTTTATACAGTGACAATGCTTTTATGTGGCAAGTGTCACAATCCAGTGCCAAAAATTCGACGTTTCAGTCATCGAGGCAATACAGAGTTTCGATTAAGA</genome_strand>
        <mrna_strand>CGCTACTCTGTCGCCGGTTGCCGCCGGTTGTCGCTGCTCGCACGTCTTCTCTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATATAAGCCCAAAATTGTAGCTTATGTTTGGACTAAACTACAAATTGGCTAAGGTGCTCCCATCGACAATACACTATTGGAGAGCGGGTGCAGAGGTCTGATATTTCTCGTTCAAGTGTCGACTCAACGCCGAGAGAAGTCACCTTTTTTGGTTGACAAAAACCTCGAAACTGCCCTTTGGCTCATCTTAATGTAACTATTATTGTGACAGAGAAGATAAGAACATTGTTTTTGTGAAATCACATGTCGACAGCAACATACCCACCACCCCCTCCGTTTTATAGGCTGTACAAGGACTATCTTCAAGACCCCAAGTCTGCTCCGGAACCTCCCCCTCCAATTGAGGGCACCTATGTCCTCTTTGGTAGCAACTACACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATGATGTACTCCCAAATTTGGAAGAGCAGGGTGTGCGTCAGTTATACCCAAAAGGGCCTAATGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAAGAAAGAACTAAGAGCACTTAACAGAGAATTGCAGCTACATATATTGGAGCTTGCTGATGTTCTTGTAGAGCGCCCTTCGCAATATGCCAGGAGAGTGGAAGAGATATCTCTGATATTCAAGAACTTGCACCACCTACTCAATTCTCTGCGTCCTCACCAG...........................................................................................................GCTCGAGCCACACTTATCCACATTCTAGAACTTCAGATACAACGACGTAAACAAGCAATAGAGGATATCAAGCG...........................................................................................................................................................................................................................................................................................................................................................................GAGAAGGGAAGAAGCTCAGAAGCTTCTAAAGGAGGCACTTGGTACCCTTGAGGGACAGTAGAATGCTCTTTAGACTTTACACACACAGCTGGCAGAATTAGTGTCTAGAATGCTTTGAAATTACAGTATAGAAATCATTCAGTCCTAATGTGAAATTTTCTTTATTCACTTGCCTGAATTTTATACAGTGACAATGCTTTTATGTGGCAAGTGTCACAATCCAGTGCCAAAAATTCGACGTTTCAGTCATCGAGGCAATACAGAGTTTCGATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321445" ref_strand="+" ref_description="SGN-U321445        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:28439367-28443328 REVERSE | Aliases: F10A5.7, F10A5_7(evalue: 2e-20, score=97.4) genbank/nr: gi|42563241|ref|NP_177702.2| expressed protein [Arabidopsis thaliana] (evalue: 1e-18, score=97.4)">
      <seq>aaacagagtaactgatcgttttcgtgtgaaatcttgagagaatcgggtaatcaaaaaccgaaagcttcggtttttccgtttgttaagcagaaatattctcagatagctaaatcgttactatttggattgtaagggaggaaatgaaataattgcgaagaaatcgaagaaagggggagaaagattgagtggtgctggtgaagtttagtccagtatgaacaacattgaaatgggttgtttaaagtctgatgataacgatgagattcattccaatgtttctgttcggaagcgatttaagtttcccaaaaagttttttgatgagtgtaatggagtagatcatgcttctgttcctcggaaagttcgttcagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcattgttgtggccaggcttgtctgcagcagggtcatcttgttccgacatacttgattcttcaccacagtttccaattggcaaatttcctgtctggatcgggagcgctggcactgatcatcaagctcaaaatgcaaaatcttgtctaccaaccatgaaggattctcaagttccacttgagttgaggaagtcatttaagaggtgtgctgctcatgtttatataagtcggctgactaagggcttacagacttcgatgagaggtgacacagtctcctcgcatccttctcagtcctcacctcctgatggagtgaagcaagagcctcctataattcagaacagcccaactgtaaaggtgaatgatatgcatggaattgtttctactgggaatgttgcctctactgttgagaagaatccaactgaagttagaaatgcaatccttttgcaccaaagactcctccaagatcagcaacaggcttctactacatctgggttcaattctttaccaaagcagaatgcagatttcctttcattgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="87630" stop="91836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87930" g_stop="88054" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88055" i_stop="89082" i_length="1028">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89083" g_stop="89264" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="307" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89265" i_stop="89344" i_length="80">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89345" g_stop="89402" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="365" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89403" i_stop="89780" i_length="378">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89781" g_stop="89902" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="487" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90036" g_stop="90243" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="695" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90329" g_stop="90507" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="874" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90508" i_stop="90582" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90583" g_stop="90637" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="929" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="90638" i_stop="90760" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="90761" g_stop="90830" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="930" r_stop="999" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="90831" i_stop="90906" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="90907" g_stop="90997" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1000" r_stop="1090" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="90998" i_stop="91093" i_length="96">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="91094" g_stop="91444" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1091" r_stop="1441" r_length="351" r_score="0.997"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="91445" i_stop="91512" i_length="68">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="91513" g_stop="91536" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1442" r_stop="1465" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-U321445" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87930" e_stop="88054"/>
          <exon e_start="89083" e_stop="89264"/>
          <exon e_start="89345" e_stop="89402"/>
          <exon e_start="89781" e_stop="89902"/>
          <exon e_start="90036" e_stop="90243"/>
          <exon e_start="90329" e_stop="90507"/>
          <exon e_start="90583" e_stop="90637"/>
          <exon e_start="90761" e_stop="90830"/>
          <exon e_start="90907" e_stop="90997"/>
          <exon e_start="91094" e_stop="91444"/>
          <exon e_start="91513" e_stop="91536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGGGTAAATCAAAAATTTATTCTTTTTGTTTGTTTGTTTGTTCTTGTTCAGTTATGAGTTGTTGCAACAGATTGTAAGCTGGATTAATTTTTTTTTTCATGATTCTCTGTTGTTTGTTCATGGAAATGACTGAGTTTTTTGTTTTCTGCATTTTGAATTTTTGCGTTTTCGATCTGAAAGAGTGATGAGATTATGCTTTTTCTGAAGAAAATGTACGTTTGATCTATATAATCTGATATGTTGATCTGTTTTAATGGGGTTTTGTTGATGAATAGAGATGGTACTGTAATTTCTCTACATGGGGTTGATTTTTTTTAGGTACTTTGCGTGTGTGTTGTCTTTCTCTTTCTCTCTCTCTCTCTTTCTTTTTGGGGGTTGATGAGTACGAGTGTGACAGACTCACAGTGAGAGAGCGGCTTTATTATGTGAAGAAGAACCCGATTCGTTGTACATAAAGGACCAAATTCAGTTTTCTTCTTCTTCTTCCCTTTTTAACCATTTTTAGAGTTTTTAAATGTTAGTACTGTAAAACCCAAAAGCCTTTAATGTTTCTGTATCGGGTTTTTAGATTCACTACCAAAAGTTCTGAATTTTGGAGGTTCTTGTTTGATGATTAGAGAATTGATTGTAGCTGGGTCTGGAAAAAAAATTGTTTTCAATTCAATTTTGTTGCAGTATTTTTTTTCCAGAAATGGACAAGAATCGGTAATGCTTAAGTGTGAAAGTGAATTTTATTGTTTCGTCTTTGTATTAAAATCAAACGGTTACTAGACAACAAGACCCATCAATGCGTCTATTGTCTGTTTCTGCAAATATATTCTTATTCTTATTCATCTATATGTGGATTTTGGTGTTTGCGAGGTTGAGAAACGCGTGTCGTCTTGTATTCCTCCTTTTCTCCTCTCTTTTTTTCTTTTTTGGTTATCTGTTACAGTTCTTTATCCTTCTTTTTGTTTTGATTTTTCTTGTGATTTCTGCTTTCCACACAAAATTCTCTGATAATATTTCTGGGTTTTGCTTTGAATGCTTAGATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAGGTTTGATATTTTAGCTCAATTAAGTATATTGTAAATAGGTATTGGTCTGTTAAATTCATTAACCCCTTTTGGATTTGCAGTTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAGGTTTGTATTTTTGTGAATCAAATTTGGAAATTACTGACTTGCTTATGTTTGTTATCTTATTTGGAATAGTTATGTGTTAGTTGGAGCCCAGTGCTTGGAAGTGGGTCACTTGTTGCTTTATTTTGTAAATTATAGTAAATTCCTTTTCACCTTTTCTTTCTTTTTAAGCATGAGAAGATTCTGTAAGTTTCTTCGTCTTATTTCGCTTTTTAAACCTTTGGAATCATTAAAAAGTACTTAATCTGCAATTTGGGTGATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACAGTAAGTTCCCATTTCTTACCGCACTCTTCCTTGCCTACAAATATTGTTTGGTTTCTCATGCACCGAGTAATGATAGGTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAGGTGTTTTAGCACTTCGATATAGCTTTCAGTTACTCTCATGTACTTTGTTCCATTCTGAACAACTATATGGAACACTCATTTGATTTGATTATGCAGGATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTAGCAAAGCAGGTTAGTTATCTTCAATAATGTGTGATATTCTTCATCCATACACGATAATAATCCTCTTTCTTTCGCAGAATGCAGATTTCCTTTCATTGTCA</genome_strand>
        <mrna_strand>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG................................................................................TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA............................................................................GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAG................................................................................................GATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTACCAAAGCAG....................................................................AATGCAGATTTCCTTTCATTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332345" ref_strand="+" ref_description="SGN-U332345        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>cagtacaagtttggtggagtctctacctcacaaatgcgagactggcaaaatgcagggcgaccaatgcctatctttggaccttctcaagctcaattggcagcttcttcttcctcgatggaagcactttcttccaagtatgttccacccttgttgaacgagcaggagcttatgtccatttttacgtcacgaactaattcaaggatcaaaggacaatattacagtttcccttctggcttggaaggaagtggacatggactctaccccaataatgtgccttcattgcagcttctttgcaatgatcgtcgttaatacggagagccatggcaccatgtccataatatcagagcgaaactcctgcaaatcataattgatttattcttttctttgcttatgcatgagagttggtgttcattctgttactgaatataaggaacacaaaaaagggaggatatagtaaatttcatgtcccttattagatgcttattctgtttcagtttcaattaattatagagtaacaacttcagaaatggttgttggtttttccctagatggaaagaaactttatgtgtctgagaaggttattgacttgtagtatacacaagaagaagaatggcaatgaaaaaaattgcagctgctttaaatttctttcagcaattttcaggaaaataaagtgttcttttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="92077" stop="93361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92377" g_stop="93060" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="685" polyA_stop="700"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-U332345" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92377" e_stop="93060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACAAGTTTGGTGGAGTCTCTACCTCACAAATGCGAGACTGGCAAAATGCAGGGCGACCAATGCCTATCTTTGGACCTTCTCAAGCTCAATTGGCAGCTTCTTCTTCCTCGATGGAAGCACTTTCTTCCAAGTATGTTCCACCCTTGTTGAACGAGCAGGAGCTTATGTCCATTTCTACGTCACGAACTAATTCAAGGATCAAAGGACAATATTACAGTTTCCCTTCTGGCTTGGAAGGAAGTGGACATGGACTCTACCCCAATAATGTGCCTTCATTGCAGCTTCTTTGCAATGATCGTCGTTAATACGGAGAGCCATGGCACCATGTCCATAATATCAGAGCGAAACTCCTGCAAATCATAATTGATTTATTCTTTTCTTTGCTTATGCATGAGAGTTGGTGTTCATTCTGTTACTGAATATAAGGAACACAAAAAAGGGAGGATATAGTAAATCTCATGTCCCTTATTAGATGCTTATTCTGTTTCAGTTTCAATTAATTATAGAGTAACAACTTCAGAAATGGTTGTTGGTTTTTCCCTAGATGGAAAGAAACTTTATGTGTCTGAGAAGGTTATTGACTTGTAGTATACACAAGAAGAAGAATGGCAATGAAAAAAATTGCAGCTGCTTTAAATTTCTTTCAGCAATTTTCAGGAAAATAAAGTGTTCTTTTATAC</genome_strand>
        <mrna_strand>CAGTACAAGTTTGGTGGAGTCTCTACCTCACAAATGCGAGACTGGCAAAATGCAGGGCGACCAATGCCTATCTTTGGACCTTCTCAAGCTCAATTGGCAGCTTCTTCTTCCTCGATGGAAGCACTTTCTTCCAAGTATGTTCCACCCTTGTTGAACGAGCAGGAGCTTATGTCCATTTTTACGTCACGAACTAATTCAAGGATCAAAGGACAATATTACAGTTTCCCTTCTGGCTTGGAAGGAAGTGGACATGGACTCTACCCCAATAATGTGCCTTCATTGCAGCTTCTTTGCAATGATCGTCGTTAATACGGAGAGCCATGGCACCATGTCCATAATATCAGAGCGAAACTCCTGCAAATCATAATTGATTTATTCTTTTCTTTGCTTATGCATGAGAGTTGGTGTTCATTCTGTTACTGAATATAAGGAACACAAAAAAGGGAGGATATAGTAAATTTCATGTCCCTTATTAGATGCTTATTCTGTTTCAGTTTCAATTAATTATAGAGTAACAACTTCAGAAATGGTTGTTGGTTTTTCCCTAGATGGAAAGAAACTTTATGTGTCTGAGAAGGTTATTGACTTGTAGTATACACAAGAAGAAGAATGGCAATGAAAAAAATTGCAGCTGCTTTAAATTTCTTTCAGCAATTTTCAGGAAAATAAAGTGTTCTTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321683" ref_strand="+" ref_description="SGN-U321683        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | clathrin coat assembly protein, putative, similar to clathrin coat assembly protein AP17 GB:CAA65533 GI:2959358 from (Zea mays); contains Pfam profile: PF01217 clathrin adaptor complex small chain | chr1:17615538-17617355 REVERSE | Aliases: T2E6.6, T2E6_6(evalue: 2e-74, score=275) genbank/nr: gi|77553342|gb|ABA96138.1| clathrin assembly protein AP17-like protein [Oryza sativa (japonica cultivar-group)] >gi|17149110|gb|AAL35901.1| clathrin assembly protein AP17-like protein [Oryza sativa] (evalue: 1e-73, score=279)">
      <seq>tctctggcacctcagttgtgaccctgagggctttttgctggtttttacaaattaaagaatcaaagagattttttcaattgtttctacagctgttttgcctgcagatcttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtactcacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaacgagttggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcatcgagagaatgggagagttggagaagcaggagtgaagaactccgatgctttgctcaagagtcaaaacaaacacttgccttttccttcatcacctgcacttctcttccggctggctgtatttactgcattagacattctgtatcccgttgataccttcatgttgatgtggcctcatttaatacaagatttgttcattcatacatttaaaggtagtttgcaagtttaaatatgaatgtctctatctattcccagtttaaatatgaatatctttatcttttgttaactccaaaaactatattgttgttggaagtaggaaaagggttatttcaatccgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaaaaaaaaacctcgaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96976" stop="93167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96676" g_stop="96556" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96555" i_stop="96410" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96409" g_stop="96311" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="220" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96310" i_stop="96229" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96228" g_stop="96178" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="271" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96177" i_stop="94875" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94874" g_stop="94701" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="445" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94700" i_stop="94399" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94398" g_stop="94339" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="505" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94338" i_stop="93811" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93810" g_stop="93468" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="848" r_length="343" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="850" polyA_stop="887"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-U321683" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96676" e_stop="96556"/>
          <exon e_start="96409" e_stop="96311"/>
          <exon e_start="96228" e_stop="96178"/>
          <exon e_start="94874" e_stop="94701"/>
          <exon e_start="94398" e_stop="94339"/>
          <exon e_start="93810" e_stop="93468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAGAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATACGAA</genome_strand>
        <mrna_strand>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAAAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326623" ref_strand="+" ref_description="SGN-U326623        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>aaaatgtgattatctgtcttgttttcgatctatagaacaccatactaagcgaatttgctacaattgtgctaaggcaaagggttctctttcgctagcctttaattttctaaaagtagtaatgtgtaactatcttatactgtgagaggatgatgtcctcttggtggagaactattttgctttccctctacactacgcctgcacattatcatgacatttcacattattggtgaagtaatatcaagatggtttatcgtatttatctaccattgcatcataaatacttgttccgttggtatcaaaggaataactttgtgaaatgattgaaggatagggagtggtgggggattcaagatattgttcaaaatttaatttctgtgtagagtaacctatgttatggcttagtatgaaattcttattgagacatttctccgtacctacatgttgtttcctaattcagtatcttggctttagaaaatttagaggttggaagagagtgggagagtggagggagggaaggatcaagaaagaagagccatttcccttttgcttgtgcatgattagaggatttatttagaatcatatacagactactttttatgcatcattctagcttcaatattgngtgtaatattcctgngatctgatttcttaaagaatcaaaaaatgttaacctgcaaaaggaaacaaaagaagcattgtgttttaactttgttgggtaatcctttctcatgagatgcttcgtgaagtataacatactatttaaaagtcctcgatgacataaagtacaaagcaagatatcggacagaagctcttttttcctaagtaagtgatttatccttggagctgtaagggggaaggtaaagccaaggaagagagagaaaaccagtttgaggtttgaacttgtgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96356" stop="94850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96056" g_stop="95150" g_length="907"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="909" r_length="909" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-U326623" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96056" e_stop="95150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTG-GTGTAATATTCCTG-GATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATA</genome_strand>
        <mrna_strand>AAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTGTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACACTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGNGTGTAATATTCCTGNGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCCAAGGAAGAGAGAGAAAACCAGTTTGAGGTTTGAACTTGTGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328823" ref_strand="+" ref_description="SGN-U328823        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G47840.1 | Symbol: None | hexokinase, putative, similar to hexokinase 1 (Arabidopsis thaliana) Swiss-Prot:Q42525 | chr1:17618547-17621329 REVERSE | Aliases: T2E6.5, T2E6_5 (evalue: 9e-172, score=600) genbank/nr: gi|67003902|gb|AAY60842.1| plastidic hexokinase [Lycopersicon esculentum] (evalue: 0, score=962)">
      <seq>cactctgtggtaacgtcaccatttattgtctctttttttttctccgtcacacaggggaattggggtcactgttacctaaaatgtcggtcaccgttagctcgccggccgtccgatccttccatgtttcacgatcacctcataaaacgatctctaggccacgtgtcattatatctgccgtccgatctactgacagcttaggagtagcaccaattttgacgaagttgcagaaagattgtgctactcctcttccagttttgcgccacgtggcggatgcaatggccgatgatatgagggccgggcttgccgtcgacggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcgttggaccttggtggtacaaatttccgggtgctaagggtgcagctaggtggtaaagaagagcgtgtagtcgccactgagtttgagcaagtctctataccccaagaactgatgtttgctacctccgaggagcttttcgatttcatagcttctgcgctaggaaaatttgcacaaaaggaaggtggtaattttgagttgcaacagggacggacaagggaaataggattcacgttttcttttccggtgaaacagacttcaataagaactggaatcctaatcaaatggacaaaaggttttgctgtctctggaactgcgggaaaagatgttgttgcttgtctgaatgaagccatggagaggcggggaatggatatgcaagtgtctgccctggtcaatgacactgtgggaacacttgccggagcaagatactgggatgatgatgccatggttgctgtcattcttgggactggaaccaatgcttgctatgtagaacgtgtggatgctattcctaagctggcaaaaaggatgtctaagtctccaataacgattgtgaataccgaatggggagctttctcaaatggccttcctttaactgagtttgatagagaaatggatgccgagagcattaaccctggtgagcagatttttgaaaagaccatctctggtatgtaccttggggaaattgtgagacgggtgctggtcaaaatggccaaggttgggggcttatttggtagcagctatgttccggagaagctagtcactccatttgtgctgaggacacctgatatatgtgccatgcagcaggatacatcaatagatcttgaagctgttgagtctgtcctctatgatgtagctggggtaaaatccgatctaagtgcaaggaaaacagtcgtggacatttgcgatactattgcaaaacgagggggtcgtctagctggtgcaggaattgttggtatattacagaaaatggaggaagattctaaaggtctcatctttggtaaaagaacagttgtagcaatggatggaggcttatatgagcactatcctcagtacagaggatacctccaagaagctgtcacagagctactaggctcggaaatttcgaaaaatgtagtgatagaacattcaaaagatggatctggtattggagctgcattattagctgctgcaaattcaaagtatgaacatgatgattaagggaaaagctaaatttcatgtgttcaaaggtttgcttgaggaaaaatacatgagcatttgtaatttagaatgttctaaagaaggattgatgattggatttatagaggctcttgtttgtgatgccattttttgtactcccattaatgaagtacgaagaagtgaggatttatatagccaaccccaatttatttggaatcgaggcgtagttgtaattgtattatatgcagcactgacttatttatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="104092" stop="99635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103803" g_stop="103440" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103439" i_stop="102830" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102829" g_stop="102679" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="515" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102678" i_stop="102594" i_length="85">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102593" g_stop="102411" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="698" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102410" i_stop="101848" i_length="563">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101847" g_stop="101773" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="773" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101772" i_stop="101675" i_length="98">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101674" g_stop="101519" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="929" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101518" i_stop="101433" i_length="86">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101432" g_stop="101337" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="930" r_stop="1025" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101336" i_stop="101235" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="101234" g_stop="101101" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1026" r_stop="1159" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="101100" i_stop="101006" i_length="95">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="101005" g_stop="100924" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1160" r_stop="1241" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100923" i_stop="100520" i_length="404">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="100519" g_stop="99935" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1242" r_stop="1826" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-U328823" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103803" e_stop="103440"/>
          <exon e_start="102829" e_stop="102679"/>
          <exon e_start="102593" e_stop="102411"/>
          <exon e_start="101847" e_stop="101773"/>
          <exon e_start="101674" e_stop="101519"/>
          <exon e_start="101432" e_stop="101337"/>
          <exon e_start="101234" e_stop="101101"/>
          <exon e_start="101005" e_stop="100924"/>
          <exon e_start="100519" e_stop="99935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACTGTTAGTATTTCTTGACTCTCTTATTTGTGTAAAGGAGTGGCAGATTTTAGACATCTTACTAATTTAGCCTATGACTGATTCTGGAACCATACATCGCTAAGAAGGCCAATCAATTCTGCGTTATTTTAGTTTCAGTAAAGATGGCCAATTTCCCTCGAACTACTAAAACTTCCAACGAACGTTACGGTTTTACCTTTTTCTGAAGAAAGCACCGGAATCATCTAGTTGGTAAAATCCTGTAATTCCATCCCCAATCGATTGTGCATGTGAGATTTTCTGTTTTCTGGACAACCGAGTGTTTCATATTCGTGAGTCCATTTTTTTCAAGATACAACAAATTTGTAAGAGTACTGGTTACACTATGATAACTGATTAGTAAGTTGTGTAATTAGAGGGATCATTTCATCGCTTTGTTCTTACAAGTCGAATCGGAAAATACTGGATTCCAAACTAGTAGAGAAGATCGAGTTCCTTAACATTGACTTTTAACTTTGTCTCTCTTATCATTATCATTTTCATTTTACCTGCCGATTATTTTTTGATTCCATCATAACATGGAACAGGCGGGAAAAGATGTTGTTGCTTGTCTGAATGAAGCCATGGAGAGGCGGGGAATGGATATGCAAGTGTCTGCCCTGGTAGGTTCTTGCTCAACTTCATGTGTATTGTAGAAATGTTGGAGAATAGTCTGGCGCTTCCTTAGTTCAATCATTTCATGATTTCATTGTCAAGTTAGGTCAATGACACTGTGGGAACACTTGCCGGAGCAAGATACTGGGATGATGATGCCATGGTTGCTGTCATTCTTGGGACTGGAACCAATGCTTGCTATGTAGAACGTGTGGATGCTATTCCTAAGCTGGCAAAAAGGATGTCTAAGTCTCCAATAACGGTAAGTAGAGCCCAAATCTCCTTCGTCAAGTTATTTCATGAACAGATTTTAGCAACCATTGAGTTTGATACATCATTATATTTTAGATTGTGAATACCGAATGGGGAGCTTTCTCAAATGGCCTTCCTTTAACTGAGTTTGATAGAGAAATGGATGCCGAGAGCATTAACCCTGGTGAGCAGGCAAGTATTATTGACTCAAAATGTGAAAATTTCTTTTCTTCGTATTATTGGTATCACACTGTTTCTTAATGGTCTTTTCTACCATCTTATTTCTTGATGAAGATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAAAAGCTAGTCACTCCATTTGTGCTGAGGTAATTACATCTGTTATATCAGAAGTTTATGATGCAAATGTTCTCGGTTTGTATTAATTAGTTTTTACTCACTCTGTCTGATCTGCATCATATAGGACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGGGTATATTCCTTAACTCTCGTGTTTTAACTTGCACTGCAATACTCTTTCCAGTCACTTATCTTCTAGGCCAATTTTTTTTCCGATTGAATACTTGTTGTCCAATAATCGATTCATGAAGAACCTTACATTTGAAGATCTATATTCATTCCAAAGACAACATTCAAAAGGATAGTTTAGCATCTGTTTCCATAAACATAGAACATTTTCCAGAGTTATGTTTATAGATATGAAAACACACAATAACAACTACTATTACGCCTCAATCCCAAGCAAGTTTAGGTCAGCAAAAAAATTTAGTCTCTCTAGCACTAGAAGTTCTTTGCAAAAAATATTTTCGTAGAGTATGAAAGAAGTCTACGAACGTTTTGATGTTCACGATTTTTCTTTGGATTATTAAATTTCAGGTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGTGTTCAAAGGTTTGCTTGAGGAAAAATACATGAGCATTTGTAATTTAGAATGTTCTAAAGAAGGATTGATGATTGGATTTATAGAGGCTCTTGTTTGTGATGCCATTTTTTGTACTCCCATTAATGAAGTACGAAGAAGTGAGGATTTATATAGCCAACCCCAATTTATTTGGAATCGAGGCGTAGTTGTAATTGTATTATATGCAGCACTGACTTATTTATGTGA</genome_strand>
        <mrna_strand>CACTCTGTGGTAACGTCACCATTTATTGTCTCTTTTTTTTTCTCCGTCACACAGGGGAATTGGGGTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAG.....................................................................................GAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGAAAAGATGTTGTTGCTTGTCTGAATGAAGCCATGGAGAGGCGGGGAATGGATATGCAAGTGTCTGCCCTG..................................................................................................GTCAATGACACTGTGGGAACACTTGCCGGAGCAAGATACTGGGATGATGATGCCATGGTTGCTGTCATTCTTGGGACTGGAACCAATGCTTGCTATGTAGAACGTGTGGATGCTATTCCTAAGCTGGCAAAAAGGATGTCTAAGTCTCCAATAACG......................................................................................ATTGTGAATACCGAATGGGGAGCTTTCTCAAATGGCCTTCCTTTAACTGAGTTTGATAGAGAAATGGATGCCGAGAGCATTAACCCTGGTGAGCAG......................................................................................................ATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAGAAGCTAGTCACTCCATTTGTGCTGAG...............................................................................................GACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGTGTTCAAAGGTTTGCTTGAGGAAAAATACATGAGCATTTGTAATTTAGAATGTTCTAAAGAAGGATTGATGATTGGATTTATAGAGGCTCTTGTTTGTGATGCCATTTTTTGTACTCCCATTAATGAAGTACGAAGAAGTGAGGATTTATATAGCCAACCCCAATTTATTTGGAATCGAGGCGTAGTTGTAATTGTATTATATGCAGCACTGACTTATTTATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339317" ref_strand="+" ref_description="SGN-U339317        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G47840.1 | Symbol: None | hexokinase, putative, similar to hexokinase 1 (Arabidopsis thaliana) Swiss-Prot:Q42525 | chr1:17618547-17621329 REVERSE | Aliases: T2E6.5, T2E6_5 (evalue: 1e-45, score=180) genbank/nr: gi|67003902|gb|AAY60842.1| plastidic hexokinase [Lycopersicon esculentum] (evalue: 1e-80, score=303)">
      <seq>cataaaagctgtaatgctctctgctacggtttagtttcagcactatgaaagtaacgaacagttatatagttagccaaattcttatattctttcattaaatcctcatcaatattttattgaaattcaactgtttttcatcattattttatttgaaattcaactgttcaaacaaactttttttttttagtgttaaaagttgaaatcttgaaacactctgtttcaacgtcaccatttattgtctctctttttttctccgtcacacaattgaattgatctcactgttacccaaaatgtcggtcaccgttagctcgccggccgtccaatccttccatgtttcacaatcacctcataaaacgatctctaggccacgtgtcattatatctgccgtccgatctactgacagcttaggagtagcaccaattttgacgaagttgcaaaaaaattgtgctactcctcttccagttttgcgccacgtggcggatgcaatggccaataatatgcgggccgggcttgccgtcaacggcggcagtgatctgaaaatgatccttagttatgtcgacactctaccaactgggaatgaaaaaggcttgttttatgcgttggaccttggtggaacaaatttccgggtgctaagggtgcagctaggtggtaaaaaagagcgtgatacccccactgagtttgagcaagtctctataccccaaaaactgatgtttgctacctccaaggaactgttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="104319" stop="102378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104019" g_stop="103440" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103439" i_stop="102830" i_length="610">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102829" g_stop="102679" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="725" r_length="151" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102678" i_stop="102594" i_length="85">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102593" g_stop="102583" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="736" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-U339317" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104019" e_stop="103440"/>
          <exon e_start="102829" e_stop="102679"/>
          <exon e_start="102593" e_stop="102583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAAGCTGTAATGCTCTCTGCTACGGTTTAGTTTCAGCACTATGAAAGTAACGAACAGTTTTATAGTTAGCCAAATTCTTATATTCTTTCATTAAATCCTCACATCATTATTTTATTGAAATTCAACTGTTTTTCATCATTATTTTATTTGAAATTCAACTGTTCAAACAAACTTTTTTTTTTTTTCAAGTGTTAAAAGTTGAGATCTTCAAACACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGA</genome_strand>
        <mrna_strand>CATAAAAGCTGTAATGCTCTCTGCTACGGTTTAGTTTCAGCACTATGAAAGTAACGAACAGTTATATAGTTAGCCAAATTCTTATATTCTTTCATTAAATCCT--CATCAATATTTTATTGAAATTCAACTGTTTTTCATCATTATTTTATTTGAAATTCAACTGTTCAAACAAAC--TTTTTTTTTTT--AGTGTTAAAAGTTGAAATCTTGAAACACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCCAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCAATCCTTCCATGTTTCACAATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAAAAAAATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCAATAATATGCGGGCCGGGCTTGCCGTCAACGGCGGCAGTGATCTGAAAATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAAAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGAACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAAAAGAGCGTGATACCCCCACTGAGTTTGAGCAAGTCTCTATACCCCAAAAACTGATGTTTGCTACCTCCAAG.....................................................................................GAACTGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318653" ref_strand="+" ref_description="SGN-U318653        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C2H2 type) family protein, contains zinc finger, C2H2 type, domain, PROSITE:PS00028 | chr1:28432367-28434910 FORWARD | Aliases: F10A5.10, F10A5_10(evalue: 3e-122, score=435) genbank/nr: gi|15222333|ref|NP_177700.1| expressed protein [Arabidopsis thaliana] gi|9369383|gb|AAF87132.1| F10A5.10 [Arabidopsis thaliana](evalue: 3e-120, score=435)">
      <seq>aaacttctctctctctttttctcttatgaaaaagagaacttcttcaacaattgctctgtttttttcccattttcttgctctgtttttaatggcactgttaacatttttaccagaaacatcagaaaaaaatcaaccttcaaagaggaggaaaaaacaacaaaaacagaataaggagaaacaaaagcagccatcttcatgggatcaattcaaaaacttattgacttgcaaacaaattgaaaactcaactgttcatgatcctgcttccaaaaaccctcctccttctgctgctgctgctgctcctgctggagcttactctaagttgagttcttgtagctccatatgcagtttcagggatgtggtacatggcaacacaagagtggtacatagagctgataattccccagaaagtagcagtttaggccaagaaactcgtcttctaagcaagaataaaacttcacatcatggtccttcatcttcaagttcgagatctcttgctagatcaaacggtaatggtagctccacatacactacttcatcaagaggaatgcaatttcgtaagctatctggatgttatgagtgtcacatgatagtagatcctagcaggtaccctttaccaaggtcaacaatttgtgcatgtccagattgtggagaagtttttccaaaaattgagagcttagaacatcatcaagcagttaaacatgctgtgtcagagttgggtccggaagattcaagccgtaacatagtggaaataatcttcaaatcaagctggcttaaaaaggataatccgatctgtaagatcgaacggatattaaaagtccacaacaccaaacgcacgatccaacggttcgaggactgtagggacgcggtgaagatacatgcagtggccacaggcaagaaaaacccaagatgtgcagctgatggaaatgagctgcttagattttactgcacgagccttacgtgcgtccttggtgcacgtggctcgtccagcttgtgtggctcggtacccggttgtggagtttgcactaccatacgtcacggtttccaaggaaacaaaactagtggagtccgcacaactgctagtagtgggcgggcccacgattgtcttggtagcggtatggcccgacgcagggccatgatcgtgtgtcgggtcattgctggtagagtcaagcagaatgtgggcgcttctcccacgaaagaggaggagaattgctctggctctggttctggttctggttctggcttgtctgctactggctctaccatatacaattcagtagctggacatgtagggatttactcaaatctcgaggaattatacgtatttaatccaagggctatacttccatgctttgttgtgatatacgaagcattggaatcttaggcttaatgttttttttttttaatttgtacttgagctgtttgtacggtttagtttgtttttttcttttttgttgtgtccttaaatttatgtaactaatttcaagttagttaaaaaaaagttgtaacacccgtgaggtaatgctgatccaactatgatttttgtaaatatttatttattttatttatttgtcctttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="117378" stop="113371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117078" g_stop="116728" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116727" i_stop="116257" i_length="471">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116256" g_stop="116005" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="603" r_length="252" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116004" i_stop="115903" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115902" g_stop="115802" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="704" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115801" i_stop="114550" i_length="1252">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114549" g_stop="113671" g_length="879"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="1582" r_length="878" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1583" polyA_stop="1594"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-U318653" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1583</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117078" e_stop="116728"/>
          <exon e_start="116256" e_stop="116005"/>
          <exon e_start="115902" e_stop="115802"/>
          <exon e_start="114549" e_stop="113671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAGGTATTAATTACTTAATTAAATCATATTTCCGTAACGTGCGAGTCTGATTCTCTTTTTTTCATAAATCAAATATATAGATTTTTCTCCCCCACAAGTCTTTCGTACCATGTTGAACTGCGTAAACATCTCATAACAAAAAATCAAAGTCAAAATAGTCATTTTACGATCTTATAATTAAAATATACTCGTTTTTTAGGATTCATACATGCATTATTATATGCACTTCTTTTTTTTAACTATATGACTTTACTTATGTTTTCTTTTCGTTTCGATATTTATTATAAATAAAATTTATTTTTTAAAAATAAAAAAGCAAAATCTCTAAATTTATTAATAGTGTCTTAAAATTTTGATTATAAATTGTATTGACTAGGAAGTGATTAGTAGTGTATTTCATCCAAATTTAAATTATTAGAGAAATTATTGATATAATTTTAATTATTTAATTATATTATGTCTCGATATCATTAGGGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTGGTAAATATTTATATTCGAAAAATCTCAAATACTATCTTAAAAATAAGTATAAATAATTTTCTATAAAACTTGTATAATTAGTATCCTGAAAAGCATATGCTTTAAGTAGTTAAATAGATACAGTATCAAAATGACGTATATTATTCGTGTCTATAAGTTAAATCCTTATATATATTATATTTTCTTTCCTACTTATATTCATATTCCTTTTGTTTAGATTAGGGAGGAGTAGGGGTGGAGTTTATGTGGAAAATCTCTTTTTGGAAAAGTGATATAAAGCTAGTCCACACAAAATAATATATAATCGATAAGATATATAATATAATATATAAACATTATATATGTATAATAACAAGTAAATTTAGATATTTTCTATTGAGCAGTCAAATGTGTAACTTTTTATTTTTAAAATACTCAATTTGCTCGTATTTATCCTAGAAAAGATGATTCCAATCTTGTAAAAGGAGACAAGCTTTAGACAACATTTAAGCTTTGAATTGTTTTAGGCAAAGTTCAAAATTGTGTTAGTGGAGGCAAAACGGAATTGTTAATACAATTTTTATAAAATAATAATATAAAGTACGTTAATTAAATATATTTTTGTGATACATAGGTTGAGCCCCCAATAAATATTTTGCCTTTTTTTTTGGACCACTTAAATATTTAAAGGACCATCTAGAGTAATATTTGCCAACTACCTCTTCATAAAATTGAAAAGTACTATATACATGTAGGAAAATTTTAATTGACAGATAATTAATTTCTCTTTTTATTATCATATACCACACCGACAACATGCATGACACCCTAATTTACAATACTAAATTAATTAATTAAAATATTTTTAGTTTAATAATGTTGAAGATTATTTTATTTTGATTAATTAAGAATGCATACCTAAGAAAGAATCGAATCTTTAATACTGAGATATTACTTGTCTTTGAATTACATACATTTGGTAGCCCACTCTACTTAATAATTAATGTTTTCTTATCTTGTTTAGCTATTTGAGTTCTAATTATTTATCATAAAACTAATTCTGGAATAGCTTATTCCTAAATTATTTCATAATTAGTTAATAACATTAATGTGTTGGTTGGCCAGTAAGACTTGATATCTTACCAACCAGAAATGAGACCCCATTTATTTTCTTTTGTTTTTTTTTTCATATATTTTTTTTATCGAATATTAAAAAATATATATATATTATATGTTTGCGGGTTAATTTTAATTTAAGCCGATTGATTTTCAGTGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCTTTTTACATA</genome_strand>
        <mrna_strand>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGCAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGGTCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG......................................................................................................GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATG-TTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCTTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336589" ref_strand="+" ref_description="SGN-U336589        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C2H2 type) family protein, contains zinc finger, C2H2 type, domain, PROSITE:PS00028 | chr1:28432367-28434910 FORWARD | Aliases: F10A5.10, F10A5_10(evalue: 1e-29, score=126) genbank/nr: gi|15222333|ref|NP_177700.1| expressed protein [Arabidopsis thaliana] gi|9369383|gb|AAF87132.1| F10A5.10 [Arabidopsis thaliana](evalue: 7e-28, score=126)">
      <seq>ttcgagatctcttgctagatcaaacggtaatggtagctccacatacactacttatcaagaggaatgcaatttcgaagctatctggatgttatgagtgacatgatataatctacaggtacccttaccaaggcaacaattggctgtcagattgggagaagtttcaaaaattgagagcttaaacatataagcagtaaacatgctggtcagagttgggtccggaagattcaagccgtaacatagtggaaataatcttcaaatcaagctggcttaaaaaggataatccgatctgtaagatcgaacggatattaaaagtccacaacaccaaacgcacgatccaacggttcgaggactgtaaggacgcggtgaagatacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="116427" stop="114075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116127" g_stop="116005" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116004" i_stop="115903" i_length="102">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.994" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115902" g_stop="115802" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="202" r_length="87" r_score="0.861"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115801" i_stop="114550" i_length="1252">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114549" g_stop="114375" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="376" r_length="174" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-U336589" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.061" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116127" e_stop="116005"/>
          <exon e_start="115902" e_stop="115802"/>
          <exon e_start="114549" e_stop="114375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTGGTAAATATTTATATTCGAAAAATCTCAAATACTATCTTAAAAATAAGTATAAATAATTTTCTATAAAACTTGTATAATTAGTATCCTGAAAAGCATATGCTTTAAGTAGTTAAATAGATACAGTATCAAAATGACGTATATTATTCGTGTCTATAAGTTAAATCCTTATATATATTATATTTTCTTTCCTACTTATATTCATATTCCTTTTGTTTAGATTAGGGAGGAGTAGGGGTGGAGTTTATGTGGAAAATCTCTTTTTGGAAAAGTGATATAAAGCTAGTCCACACAAAATAATATATAATCGATAAGATATATAATATAATATATAAACATTATATATGTATAATAACAAGTAAATTTAGATATTTTCTATTGAGCAGTCAAATGTGTAACTTTTTATTTTTAAAATACTCAATTTGCTCGTATTTATCCTAGAAAAGATGATTCCAATCTTGTAAAAGGAGACAAGCTTTAGACAACATTTAAGCTTTGAATTGTTTTAGGCAAAGTTCAAAATTGTGTTAGTGGAGGCAAAACGGAATTGTTAATACAATTTTTATAAAATAATAATATAAAGTACGTTAATTAAATATATTTTTGTGATACATAGGTTGAGCCCCCAATAAATATTTTGCCTTTTTTTTTGGACCACTTAAATATTTAAAGGACCATCTAGAGTAATATTTGCCAACTACCTCTTCATAAAATTGAAAAGTACTATATACATGTAGGAAAATTTTAATTGACAGATAATTAATTTCTCTTTTTATTATCATATACCACACCGACAACATGCATGACACCCTAATTTACAATACTAAATTAATTAATTAAAATATTTTTAGTTTAATAATGTTGAAGATTATTTTATTTTGATTAATTAAGAATGCATACCTAAGAAAGAATCGAATCTTTAATACTGAGATATTACTTGTCTTTGAATTACATACATTTGGTAGCCCACTCTACTTAATAATTAATGTTTTCTTATCTTGTTTAGCTATTTGAGTTCTAATTATTTATCATAAAACTAATTCTGGAATAGCTTATTCCTAAATTATTTCATAATTAGTTAATAACATTAATGTGTTGGTTGGCCAGTAAGACTTGATATCTTACCAACCAGAAATGAGACCCCATTTATTTTCTTTTGTTTTTTTTTTCATATATTTTTTTTATCGAATATTAAAAAATATATATATATTATATGTTTGCGGGTTAATTTTAATTTAAGCCGATTGATTTTCAGTGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGC</genome_strand>
        <mrna_strand>TTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTT-ATCAAGAGGAATGCAATTTCG-AAGCTATCTGGATGTTATGAGTG--ACATGATA-TA-AT-CTA-CAG......................................................................................................GTACCC-TTACCAAGG-CAACAA-TTG-GC-TGT-CAGATTG-GGAGAAG--TTT-CAAAAATTGAGAGCTTA-AACAT-AT-AAGCAG-TAAACATGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-GTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAAGGACGCGGTGAAGATACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324470" ref_strand="+" ref_description="SGN-U324470        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | eukaryotic initiation factor 3 gamma subunit family protein, contains Pfam profile PF04189: Eukaryotic initiation factor 3, gamma subunit | chr2:18843459-18846234 REVERSE | Aliases: F4I18.29(evalue: 3e-151, score=532) genbank/nr: gi|18406875|ref|NP_566054.1| expressed protein [Arabidopsis thaliana] gi|7486467|pir||T02474 hypothetical protein At2g45730 [imported] - Arabidopsis thaliana gi|3386622|gb|AAC28552.1| expressed protein [Arabidopsis thaliana] gi|17473624|gb|AAL38275.1| unknown protein [Arabidopsis thaliana] gi|22136132|gb|AAM91144.1| unknown protein [Arabidopsis thaliana](evalue: 2e-149, score=532)">
      <seq>gatcgtttagggttctagggtttaaactaacagagaactgaagcttatagtgtaacttccttctctactgcttcatctaatgcttaaagattgaatttttagcagcaaaaatgtctattgaagaagcagttgatgaggattcgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccattcgggtctctgtttcaagtggagccgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaacggccttgaagaaaaagacgtggatggatctaaagacaaccgtgcgcttgttgataataatactgctcagagtctcactagtgaagatattgacgagatgcgaaagcagggagcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagataagtatagggttaagaaacagaagaaatatgcacctcgagtacttttgaggcgcccctttgcacgaagcatttgtgaggcctacttcaagaaacatcctgaaaaaatcggattcatgcgagtggatgcactatctctactgctctccttggggaatgttactgctaatgcagatgtacttgtagtggacatgctcagtggtattcttactggtgctattgcagaacgacttggaggtactggttatgtgtgcaatacttatcgtggatcatcaccatatcctgtcgatatcacaaggatgtttaatttaagcgatgaaatctgtaaaagaatcgtgcatgcatcactgaccgacctgaattcatttcaaactggagcttcagtgtctgagggtcaggaagaaaccttacctgtcactcattctggtggtctagacgaagttagtgtgccagctgaagatggtggcatggatgtaacacctgagagagtttcttctccaataatcaagcctgttaaatctataaaagcaggtcagaaagcaaccctcgaggccatcaagtcgtggaaagaaaacggtttttccagcctaataattgctgctccggaactggacccatggggcattattaaagaagtgcttcctcttttatcattttcagctccttttgctgtttatcaccagtatgctcagcccctagctacgtgtatgcacaacctgcagattgagaaaatggcgattggattacaaatttctgaaccttggctacgtgaatatcaggtactcccatcaagaacccatccacatatgcagatgagcgcgtttggtggttatatactaagtggcacgaaaatatcgagcagtgactcccttaccagctctaactaggataaatttttttggcatctcactctgcttggttgtacatgtcgcttgacgataccattttcgtctttcgagaatattccctgttagaatagatgtagggattatcttgtctcttttctggggcagaaacaaggttactcatgttgtacttttattcattgattgatgtatgcttgcttttgtatgagcaattcttctaaatcaaaagactaaagggtctttttcctcttactttataaagtatttgaagattaagtggtaaattgtagaattatattgttgtctttcttggatcaagcaattgaagtctgttttgttgaagaaatataaaatatgtaatacaacattaacaattattcttcaactccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="120233" stop="126862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120532" g_stop="120775" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120776" i_stop="120929" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120930" g_stop="121057" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="372" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121058" i_stop="122066" i_length="1009">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122067" g_stop="122175" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="481" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122176" i_stop="122613" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122614" g_stop="122695" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="563" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122696" i_stop="122765" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122766" g_stop="122836" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="634" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122837" i_stop="123513" i_length="677">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123514" g_stop="123555" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="676" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123556" i_stop="123837" i_length="282">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123838" g_stop="123962" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="801" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123963" i_stop="124265" i_length="303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124266" g_stop="124359" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="895" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="124360" i_stop="124513" i_length="154">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="124514" g_stop="124580" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="896" r_stop="962" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="124581" i_stop="124692" i_length="112">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="124693" g_stop="124880" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="963" r_stop="1150" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="124881" i_stop="124962" i_length="82">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="124963" g_stop="125068" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1151" r_stop="1256" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="125069" i_stop="125615" i_length="547">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="125616" g_stop="125702" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1257" r_stop="1343" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="125703" i_stop="126079" i_length="377">
            <donor d_prob="0.145" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="126080" g_stop="126559" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1344" r_stop="1823" r_length="480" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1824" polyA_stop="1836"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-U324470" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1823</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120532" e_stop="120775"/>
          <exon e_start="120930" e_stop="121057"/>
          <exon e_start="122067" e_stop="122175"/>
          <exon e_start="122614" e_stop="122695"/>
          <exon e_start="122766" e_stop="122836"/>
          <exon e_start="123514" e_stop="123555"/>
          <exon e_start="123838" e_stop="123962"/>
          <exon e_start="124266" e_stop="124359"/>
          <exon e_start="124514" e_stop="124580"/>
          <exon e_start="124693" e_stop="124880"/>
          <exon e_start="124963" e_stop="125068"/>
          <exon e_start="125616" e_stop="125702"/>
          <exon e_start="126080" e_stop="126559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGTTTAGGGTTCTAGGGTTTAAACTAACAGAGAACTGAAGCTTATAGTGTAACTTCCTTCTCTACTGCTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAGGTACACTCCTGTCTTTAAATCTCCTTTAGTTATTCTGGAGATAGACGTACTACTTCCTGATTTTTCCTTCATTTATAACTTAATCTTTGGAGAAGGGGAAGGTAGAACGAGATTGGATAATGTTTTCACTGCATTTCTTTGATATAGCTTAGTAAATAAAACTCTAAGATTGGTAATGTAATCAAAATTAAACAAGTTACTTTCATATGCTGCAAAATGTTGCACGTTCGCCCCAGGTGGAAGAAGGCAGTATTTCTTATTTGAGCAATGATCCAGTAACTGTCTATTTGTTGTAACTAGATTATACCACTTCATTCATGTGGAACACTCAGTTTTTCTGTGGATGAGTATGTCCTCGTATTGCTTTTTGATTAGTAAAGCATTTTAGGGCTTGTGGATTGTGTTTCACTTTTTATGATTTTCTTTTTTTAATTCAGGTGATAAGTAAAACATATAATGGTAGTTTTTCATTAATTTCTTCTAAGCACTATTGTTCTTCAAATCATATAATTGATTGTTCTGCATTTAATTTCTGAACTTGAAATCCCCAAGCTATTAGTGGTGATGTCAGATGTAGATAGTCGTAATACTACATTTGGTTTCTAGTTGCAAATCCCATAGTCGTTATCTTCCTCAATCTTTTCTTTAATTTCTAACATACCTCTTGCATTTTTCAGCATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGGGTAATAATATGGTCTTTTCTTGTGTTTGATCAAATATCTTCATCTGTTGTTTCTGGTTATGATTTGTCTTTTTGATGGGAGGGAAAGAAGGATAGACATTGATAACTTATTTTAGCATCAGAAAATCTTGAAATCTGATATATCCTCCTTGATGTTATTTTTCTTTGTGGTTCAGATGCTCACTGTAGTCTAATAACCCAAAGTTTCATATCTTATTCATTTTGCTTTGCATGATTCTGGGTTTACATGGGGGTTGATTTTATATCCTCTTGATTCCATCAGATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAGGTATGTATTTGTTCTTAACTGTAGTTACATTAAGGAAATCAAGGGATATTTGTGAATTGTGACCATTGCTTTATACACATAAAATTTGATCATGCAGCCTATACTAATGGGAAATTGTATCATGTCTGTGGATTATTGCTACTGATACTGATCGTATGTTTGTCATCATGATGTGAACGGCGCTGATGCTTATAGTTGTGAAACCATGTCGAACATGTTATAGACTTATAGTATTGTTAAAGAGTGTTAATTGCTATTTAAGTTAATGACTTTTTAATATTTTCATGACAATGATATTAGCAGGTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAGGTACACTTCCTTTTGCAATGAAATAGAAAAATTACCCAATTAGTGCACAGAGAAAAAAATTGTATATTTCAGTGGATAGCTTTTGTCTAAACTCTAAATATGTTTTACTGCATTCGTACTAACTATAAACTTTGCTGTTTGTGTATGTATCTAGAATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAGGTAAAACCATGTTGTAATGTCAAAAGTTGATCCTTTTTTGGTGTAAATTGTTTCTTCTGTAAATGCGTGCGTGGATGACTTTTAAACTTCTCTCTAAAACATGTTCCTGCAGGAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGAGGCCATCAAGTCGTGGAAAGAAAACGGTTTTTCCAGGTTTGAATTTAATCTGGGTTTTATTCTTTTCTTTGACACATAATGTTTCTCCTTCTATCTCATTTCCAATATAATATTTCAGCCTAATAATTGCTGCTCCGGAACTGGACCCATGGGGCATTATTAAAGAAGTGCTTCCTCTTTTATCATTTTCAGCTCCTTTTGCTGTTTATCACCAGTATGCTCAGGTATTGTTCTTAGCTTGCCAATCTTATTTAATGTTTCTTAGCCTGCCAGGCTGCTCATTCATTGTTCACACACACAGCCCTTTCTTATTCACTTATGCAATAGCCCAACTTCTGCATTCTTTATATGTCTAGAAAAATTTTCTAAGGATGAAGTTTAGATAAACATTTTTTAATAGTAAAACCTTATGTTATTGGATTTAGGCATCCTGTAGTGAGCATGTGGTAGCAAATCAATATCCTTTTTTCTGCTCTTTAATGTCCAAAGCTGAGTAAATAAGTCGAAGAACTAAAATAGATTTTCAGAAGGTCATTCTCATTTTCCATTTGAGAGATGCAAGCATTTGAGAGGAGATCCTGCAACAGGATCACGTCACTGCTTATATTTTGGCTAGATTTTTGTTAAAAGACTCTGCTTTCTCCCATAAACTGGTGTGGATGGGTAGGTGGGCGGGCTGTTGTGTCAATAATTGGAGCGCACTCTTTGTCACATCACCTTCCCTTTCTGTTGGAAAAATAAGACAAAACTAATCCTTTGTTTTCATTGCAGCCCCTAGCTACGTGTATGCACAACCTGCAGATTGAGAAAATGGCGATTGGATTACAAATTTCTGAACCTTGGCTACGTGAATATCAGGTTTGTTTTAACTAAACCGAAACGACCCCGAAAAGGGGATCTGACCACTTACATGATTACTTAACTTTATATTTATTTGCATTCTCCAGGGAGATTCTGTCAAGCAGATAATAGAAATTTAACTATAGCTCCACTTGAAGTAGTTTGACATGTGTACACTTTTTTTTTTTTTACTGACAACTTCTTTTTCTGTACTTGTGATCAGAATTTAGGATCTAAAGTCAATAGGTTTAAACTGAGTCTAATACACACACAAAAACTTGCATGTTTATTTGTGGATCGAACCAAAAACAATGTGTTCAGTTGAACCTGCCTCTAGATCTGCCTATGTTTGCTATAGCTTGTTAATTGTGCCTGAAATACTTGAAAACATGCAGGTACTCCCATCAAGAACCCATCCACATATGCAGATGAGCGCGTTTGGTGGTTATATACTAAGTGGCACGAAAATATCGAGCAGTGACTCCCTTACCAGCTCTAACTAGGATAAATTTTTTTGGCATCTCACTCTGCTTGGTTGTACATGTCGCTTGACGATACCATTTTCGTCTTTCGAGAATATTCCCTGTTAGAATAGATGTAGGGATTATCTTGTCTCTTTTCTGGGGCAGAAACAAGGTTACTCATGTTGTACTTTTATTCATTGATTGATGTATGCTTGCTTTTGTATGAGCAATTCTTCTAAATCAAAAGACTAAAGGGTCTTTTTCCTCTTACTTTATAAAGTATTTGAAGATTAAGTGGTAAATTGTAGAATTATATTGTTGTCTTTCTTGGATCAAGCAATTGAAGTCTGTTTTGTTGAAGAAATATAAAATATGTAATACAACATTAACAATTATTCTTCAACTCCAAAC</genome_strand>
        <mrna_strand>GATCGTTTAGGGTTCTAGGGTTTAAACTAACAGAGAACTGAAGCTTATAGTGTAACTTCCTTCTCTACTGCTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG..........................................................................................................................................................................................................................................................................................ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCTAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAG...............................................................................................................................................................................................................................................................................................................GTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAG..........................................................................................................................................................AATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAG................................................................................................................GAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGAGGCCATCAAGTCGTGGAAAGAAAACGGTTTTTCCAG..................................................................................CCTAATAATTGCTGCTCCGGAACTGGACCCATGGGGCATTATTAAAGAAGTGCTTCCTCTTTTATCATTTTCAGCTCCTTTTGCTGTTTATCACCAGTATGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCTAGCTACGTGTATGCACAACCTGCAGATTGAGAAAATGGCGATTGGATTACAAATTTCTGAACCTTGGCTACGTGAATATCAG.........................................................................................................................................................................................................................................................................................................................................................................................GTACTCCCATCAAGAACCCATCCACATATGCAGATGAGCGCGTTTGGTGGTTATATACTAAGTGGCACGAAAATATCGAGCAGTGACTCCCTTACCAGCTCTAACTAGGATAAATTTTTTTGGCATCTCACTCTGCTTGGTTGTACATGTCGCTTGACGATACCATTTTCGTCTTTCGAGAATATTCCCTGTTAGAATAGATGTAGGGATTATCTTGTCTCTTTTCTGGGGCAGAAACAAGGTTACTCATGTTGTACTTTTATTCATTGATTGATGTATGCTTGCTTTTGTATGAGCAATTCTTCTAAATCAAAAGACTAAAGGGTCTTTTTCCTCTTACTTTATAAAGTATTTGAAGATTAAGTGGTAAATTGTAGAATTATATTGTTGTCTTTCTTGGATCAAGCAATTGAAGTCTGTTTTGTTGAAGAAATATAAAATATGTAATACAACATTAACAATTATTCTTCAACTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345641" ref_strand="+" ref_description="SGN-U345641        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | E2F transcription factor-3 (E2F3), identical to E2F transcription factor-3 E2F3 (Arabidopsis thaliana) gi:10443853:gb:AAG17610 | chr2:15126668-15130683 FORWARD | Aliases: None(evalue: 3e-07, score=52.8) genbank/nr: gi|3402817|emb|CAA07704.1| lacZ' [Cloning vector pGreen](evalue: 4e-19, score=98.2)">
      <seq>tataagcttattcttagaagcacaacagggccgatagatttgtttctcttgagcaaacagggtaggcagcatgaggacataaccatcaaacatgacaagtccatggattcagtgtctgctgcaaaaaagatggatgatgcttacccatccccagcacatccttgctctttagattcaacagactcaaagctctcgggtgtccataaaatagtaccttctcataacagtatagatgatgattactggttgcgctcggaggaggcggttagcgcaactgctctgtggggcattgaataatctttaaaattgagcctggttacaaactccatatatggataccagaagatatacagaaataaggcttcttataaacatgtaaatatcttttgaagctaaaaagctttacatatctctagccagattatagtaagaaacaactggtttcagggaaactcctacaacttttgcgtacaactatatggttcacaggaatatcagtcttatgattaaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="133188" stop="134784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133488" g_stop="133540" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133541" i_stop="133734" i_length="194">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133735" g_stop="133909" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="228" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133910" i_stop="134198" i_length="289">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134199" g_stop="134492" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="522" r_length="294" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-U345641" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133488" e_stop="133540"/>
          <exon e_start="133735" e_stop="133909"/>
          <exon e_start="134199" e_stop="134492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAGCTTATTCTTAGAAGCACAACAGGGCCGATAGATTTGTTTCTCTTGAGGTATCTCCACTACATGACTAGCTTCTCTCCTTTTGTAACATATGGGTGTATGTATAGCTTGGCTGGTTCACTAATTCTCTTTGTGTAGTAGTAGTCTCCCCTAAAAAGAAAGTGATATTTTACTGTACAAGCAAAAAAAATAAAGAAAGAAACTTCAAGGCCCAATTAACTAACATAATTATCAACAAATGCAGCAAACAGGGTAGGCAGCATGAGGACATAACCATCAAACATGACAAGTCCATGGATTCAGTGTCTGCTGCAAAAAAGATGGATGATGCTTACCCATCCCCAGCACATCCTTGCTCTTTAGATTCAACAGACTCAAAGCTCTCGGGTGTCCATAAAATAGTACCTTCTCATAACAGTGTAAGTATATGACTGAACCCCTCTCTTTCCCTTTCGAATTTATTGGTATCTCTTCCTCTATTGCATAAGTTAAAATGCATGTGAATCAGTATGGTTAAACACCATCAGCCTTGTTGTTTTGAAGTGACTAAGTAATTCGAAGCAATGGGCTATCCCTTTTTTAATATTAACCGGCAAAGTAATCCAATTAATAAGCCGTCAATTCTTGTAACAATAGTTATTCTATAGTAGTGAATTCATATGAAAACACTGATTATAATCCACAACATGTTCTTCCCCTAAACTGCAGATAGATGATGATTACTGGTTGCGCTCGGAGGAGGCGGTTAGCGCAACTGCTCTGTGGGGCATTGAATAATCTTTAAAATTGAGCCTGGTTACAAACTCCATATATGGATACCAGAAGATATACAGAAATAAGGCTTCTTATAAACATGTAAATATCTTTTGAAGCTAAAAAGCTTTACATATCTCTAGCCAGATTATAGTAAGAAACAACTGGTTTCAGGGAAACTCCTACAACTTTTGCGTACAACTATATGGTTCACAGGAATATCAGTCTTATGATTAACCAATGCTGGGA</genome_strand>
        <mrna_strand>TATAAGCTTATTCTTAGAAGCACAACAGGGCCGATAGATTTGTTTCTCTTGAG..................................................................................................................................................................................................CAAACAGGGTAGGCAGCATGAGGACATAACCATCAAACATGACAAGTCCATGGATTCAGTGTCTGCTGCAAAAAAGATGGATGATGCTTACCCATCCCCAGCACATCCTTGCTCTTTAGATTCAACAGACTCAAAGCTCTCGGGTGTCCATAAAATAGTACCTTCTCATAACAGT.................................................................................................................................................................................................................................................................................................ATAGATGATGATTACTGGTTGCGCTCGGAGGAGGCGGTTAGCGCAACTGCTCTGTGGGGCATTGAATAATCTTTAAAATTGAGCCTGGTTACAAACTCCATATATGGATACCAGAAGATATACAGAAATAAGGCTTCTTATAAACATGTAAATATCTTTTGAAGCTAAAAAGCTTTACATATCTCTAGCCAGATTATAGTAAGAAACAACTGGTTTCAGGGAAACTCCTACAACTTTTGCGTACAACTATATGGTTCACAGGAATATCAGTCTTATGATTAACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332355" ref_strand="+" ref_description="SGN-U332355        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>aaagacaaggacctcaaacaacccttgatttatgtcatcaagtacttaaccccccatggtaatttgaatatgtagtttatatacatcggaaaaaggattggttcttcaatgtacatctggcatatcttagttcattcattactgttgtccatgattttttagcatggctcgaaaagtataagggtcgtcgagtgtgtaggattgccagatgcaattaccattcattattaaatatccaaattatagtacttacgtttgtgtgaaggtgggaaaatgatcatgaatctatgaagttaagagttatcttagaggatcactgtacatacatataaacatctggttcttgagatggcttggttgatgtactgaatggtaattggaatgggactgggcttctataattgtatctcttctaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="135926" stop="134907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135626" g_stop="135199" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-U332355" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135626" e_stop="135199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAAGGACCTCAAACAACCCTTGATTTATGTCATCAAGTACTTAACCCCCCATGGTAATTTGAATATGTAGTTTATATACATCGGAAAAAGGATTGGTTCTTCAATGTACATCTGGCATATCTTAGTTCATTCATTACTGTTGTCCATGATTTTTTAGCATGGCTCGAAAAGTATAAGGGTCGTCGAGTGTGTAGGATTGCCAGATGCAATTACCATTCATTATTAAATATCCAAATTATAGTACTTACGTTTGTGTGAAGGTGGGAAAATGATCATGAATCTATGAAGTTAAGAGTTATCTTAGAGGATCACTGTACATACATATAAACATCTGGTTCTTGAGATGGCTTGGTTGATGTACTGAATGGTAATTGGAATGGGACTGGGCTTCTATAATTGTATCTCTTCTAATAAACTTTTGAA</genome_strand>
        <mrna_strand>AAAGACAAGGACCTCAAACAACCCTTGATTTATGTCATCAAGTACTTAACCCCCCATGGTAATTTGAATATGTAGTTTATATACATCGGAAAAAGGATTGGTTCTTCAATGTACATCTGGCATATCTTAGTTCATTCATTACTGTTGTCCATGATTTTTTAGCATGGCTCGAAAAGTATAAGGGTCGTCGAGTGTGTAGGATTGCCAGATGCAATTACCATTCATTATTAAATATCCAAATTATAGTACTTACGTTTGTGTGAAGGTGGGAAAATGATCATGAATCTATGAAGTTAAGAGTTATCTTAGAGGATCACTGTACATACATATAAACATCTGGTTCTTGAGATGGCTTGGTTGATGTACTGAATGGTAATTGGAATGGGACTGGGCTTCTATAATTGTATCTCTTCTAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319020" ref_strand="+" ref_description="SGN-U319020        Tomato 200607 #1 [14 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-09, score=64.7)">
      <seq>gcgctcttctctctgcttcccgcttcactactgctctgcacagttgagcaaaatttctgtaaaactagactttgttaagcttatcttaaaattttcttgtattggagagcgctcttcttctgcttcccgcttactactgctctgcacaaagcagaaagagaagtagtaggtggacctgtggctgtgaggaaattacagagctcattctatggcaaagagattaatagtcatactcttttcactaaaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctgttgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccaggcaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacgaggttaaggaactcgtcagttgagttacaagatgtggtttaatcaattaatgtatattacctttcatgtttttacgtgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtatcaccattactgtatgaaaggcggtaactggatgcaaactatatgtattcacatttggaatgtgttacaagttctagctcatatattatatcatacattttacagttctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="141683" stop="145322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141683" g_stop="141700" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="101" r_length="17" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141701" i_stop="141975" i_length="275">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141976" g_stop="142024" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="148" r_length="47" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142025" i_stop="142115" i_length="91">
            <donor d_prob="0.969" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142116" g_stop="142249" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="282" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142250" i_stop="142659" i_length="410">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="142660" g_stop="142732" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="355" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="143300" g_stop="143382" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="438" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144117" g_stop="144155" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="477" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144272" g_stop="144342" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="548" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="144410" g_stop="144524" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="663" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="144601" g_stop="145029" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="1092" r_length="429" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-U319020" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>1011</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141683" e_stop="141700"/>
          <exon e_start="141976" e_stop="142024"/>
          <exon e_start="142116" e_stop="142249"/>
          <exon e_start="142660" e_stop="142732"/>
          <exon e_start="143300" e_stop="143382"/>
          <exon e_start="144117" e_stop="144155"/>
          <exon e_start="144272" e_stop="144342"/>
          <exon e_start="144410" e_stop="144524"/>
          <exon e_start="144601" e_stop="145029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCAACTTTCTCTATAGCATGTAGTTACAAATCGTAATTAGCAAACTCTAATTATAAAGCATAATTAGACTAATTTTGAGTGACTATATGCGAAAATTCCTCTTTTAAAAATTATTTTCCACCCAATTTCCGAAGCCCGCATTGAGTATTTTTGTTTGTTGACATTTTTACCCTTGAGCTTTAGACATATCAGTGGCTTGCAATGGAGCGAAACGGATAGAGCGTGGAAATGACAAAATTAAGGGAAATCATCTACAGCCTCTCACTCTTTTCAATTTCAGAGAAACTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACATATAATTTGGTT</genome_strand>
        <mrna_strand>CTTAAAATTTTCT-TGTA...................................................................................................................................................................................................................................................................................TTGGAGAGCGCTCTTCT-TCTGCTTCCCGCTT-ACTACTGCTCTGCACA...........................................................................................AAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTGTTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGGCAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTTACAAGATGTGGTTTAATCAATTAATGTATATTACCTTTCATGTTTTTACGTGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAGTTCTAGCTCATATATTATATCATACATTTTACAGTTCTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336702" ref_strand="+" ref_description="SGN-U336702        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cccgggctgcaggcaaaaactagcggaccaaagtattttaacatgatctccagggagaagacgaatgggagccatacaaaccatacagggcagaatttgtggcaaaggtatgaagctcaacgaggttaatgaactcgtcagttgagtcacaagatgtggtttcatcaattaatgtatattccctttcatgtttttacacgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtatcaccattactgtatgaaaggcggtaactggatgcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="144347" stop="145242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144647" g_stop="144944" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="312" r_length="299" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-U336702" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144647" e_stop="144944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACA-ATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACT</genome_strand>
        <mrna_strand>CAAAAACTAGCGGACCAAAGTATTTTAACATGATCTCCAGGGAGAAGACGAATGGGAGCCATACAAACCATACAGGGCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAATGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U337301" ref_strand="+" ref_description="SGN-U337301        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chaperone protein dnaJ-related, contains Pfam PF00684 : DnaJ central domain (4 repeats); similar to bundle sheath defective protein 2 (GI:4732091) (Zea mays) | chr1:28425771-28426880 REVERSE | Aliases: F10A5.12, F10A5_12(evalue: 1e-51, score=200) genbank/nr: gi|15222330|ref|NP_177698.1| expressed protein [Arabidopsis thaliana] gi|26450801|dbj|BAC42509.1| unknown protein [Arabidopsis thaliana] gi|27311545|gb|AAO00738.1| unknown protein [Arabidopsis thaliana] gi|30102874|gb|AAP21355.1| At1g75690 [Arabidopsis thaliana](evalue: 1e-49, score=200)">
      <seq>accagttggtgtcagtttcagaatttcttgtttttctgattctgatgatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggttcttttctttctcaagttctctttttgtgtttttctccatgattattgtttaatttcagttgatctcatatgggttttttttattttttttttatttttggggaaattgtgatgtacttggcaggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcaaaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacacaaaattgtgtaaaattcatttatgttcatcccctctctctgcctttctcagttttcacatattcctttcaccttctgttcttacatgtaatctttaacaaggttgagcaatacctgattttcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145322" stop="148869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145620" g_stop="146088" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146388" g_stop="146439" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="521" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148035" g_stop="148191" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="678" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148342" g_stop="148564" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="902" r_length="224" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="905" polyA_stop="922"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-U337301" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145620" e_stop="146088"/>
          <exon e_start="146388" e_stop="146439"/>
          <exon e_start="148035" e_stop="148191"/>
          <exon e_start="148342" e_stop="148564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTGGTGTCAGTTTCAGAATTTCTTGTTTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAA-GTTGAGCAATACATGATTT</genome_strand>
        <mrna_strand>ACCAGTTGGTGTCAGTTTCAGAATTTCTTGTTTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGGTTGAGCAATACCTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321142" ref_strand="+" ref_description="SGN-U321142        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | chaperone protein dnaJ-related, contains Pfam PF00684 : DnaJ central domain (4 repeats); similar to bundle sheath defective protein 2 (GI:4732091) (Zea mays) | chr1:28425771-28426880 REVERSE | Aliases: F10A5.12, F10A5_12(evalue: 2e-57, score=219) genbank/nr: gi|15222330|ref|NP_177698.1| expressed protein [Arabidopsis thaliana] gi|26450801|dbj|BAC42509.1| unknown protein [Arabidopsis thaliana] gi|27311545|gb|AAO00738.1| unknown protein [Arabidopsis thaliana] gi|30102874|gb|AAP21355.1| At1g75690 [Arabidopsis thaliana](evalue: 1e-55, score=219)">
      <seq>gatgatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacacaaaattgtgtaaaattcatttatgttcatcccctctctctgcctttctcagttttcacatattcctttcaccttctgttcttacatgtaatctttaacaagttgagcaatacatgatttcaataccagctttgtccaattgctagatgttgtaaatgaaattgagcacctgtgtgtattgcattttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145363" stop="148938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145663" g_stop="145878" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146005" g_stop="146088" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="300" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146388" g_stop="146439" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="352" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148035" g_stop="148191" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="509" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148342" g_stop="148637" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="805" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="806" polyA_stop="815"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-U321142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145663" e_stop="145878"/>
          <exon e_start="146005" e_stop="146088"/>
          <exon e_start="146388" e_stop="146439"/>
          <exon e_start="148035" e_stop="148191"/>
          <exon e_start="148342" e_stop="148637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCACCTGTGTGTATTGCATTTTAAAAAA</genome_strand>
        <mrna_strand>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCACCTGTGTGTATTGCATTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-aaubzE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328694" ref_strand="+" ref_description="SGN-U328694        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | diphthine synthase, putative (DPH5), similar to Diphthine synthase (Diphtamide biosynthesis methyltransferase) (DPH5) (SP:P32469) (Saccharomyces cerevisiae); similar to CGI-30 protein (GI:4680699) (Homo sapiens); similar to methyltransferase DPH5, Saccharomyces cerevisiae, PIR2:S30890; contains Pfam PF00590 : Tetrapyrrole (Corrin/Porphyrin) Methylases domain; contains TIGRFAMS TIGR00522 : diphthine synthase | chr4:15377231-15378879 FORWARD | Aliases: None(evalue: 8e-129, score=457) genbank/nr: gi|15236075|ref|NP_194907.1| methyltransferase - like protein [Arabidopsis thaliana] gi|38258855|sp|O81769|DPH5_ARATH Probable diphthine synthase (Diphthamide biosynthesis methyltransferase) gi|7450871|pir||T05091 probable methyltransferase F28M20.20 - Arabidopsis thaliana gi|3281849|emb|CAA19744.1| methyltransferase - like protein [Arabidopsis thaliana] gi|7270082|emb|CAB79897.1| methyltransferase-like protein [Arabidopsis thaliana] gi|13605813|gb|AAK32892.1| AT4g31790/F28M20_20 [Arabidopsis thaliana] gi|23505927|gb|AAN28823.1| At4g31790/F28M20_20 [Arabidopsis thaliana](evalue: 6e-127, score=457)">
      <seq>gggcgattggcggccaatcggccgaattaagttacaagttttcactagggtttaaattcatcgtctccctcgttccaactggaaaaaagaactgtttcctctgtatctcgtactggaacttgtaaatttgcatcactaattagaagtatattttggattaaaagtgaagtgaagtgaagggagaatcatgctgtatataataggtcttggattgggtgatgataaagatataactttgaaaggtcttgaagcagtaaaaaaatgcagcaaagtatacatggaagcttacacttcacttctctcttttgggctttctccaaatggtctttccaatctggaaaatctttatggaagatcaataacacttgcagatagggaaatggtagaggagaaagctgatgagatccttaatgaagctaaagcttctgacgtggcttttctagttgttggtgatccttttggagccacaacccacactgatattgtcgtccgtgcgaagaagttgggtgtggatgttaaggtgatacacaatgcatctgtgatgaatgctgttggagtgtgtggcttacagctctaccattatggagagacagtgtccataccgttcttcactgagacctggaggccggatagtttctatgagaagattagagaaaaccgaaagcttggactacacacactctgcttgttagatatacgagtgaaagaaccaaccatcgagtctctttgcagaggaaagaagcagtatgaacctcccagatttatgacagttaacacagcaattgagcagctcttagaggttgaagaagcccgtggagaatttgtatacggtgaaaatacaatctgtgttggttttgcacggctggggagtgaagaccaaaaggtggttgctggttcaatgaagcaacttctaacagtcgactttggggcgccattgcattgcttagtcatagttggcaaaacacaccctgttgaagaagaaatgctggaattttatgggctttagaaaacgtatcacaggattgcaatagcaaatactgtattcatgtgttgccttttgtaccattccattctttttggtgactatttatttaggcattaagatgactatgatgtattttttgctttgtaaactcttcccatcttcaagtgattttgacatattttcaagaattcttaaatttaagatattgttggttatttttgtaatctttcactagtattctcaatacattatatcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-clBEZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="148776" stop="153190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149084" g_stop="149389" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="337" r_length="306" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149390" i_stop="149485" i_length="96">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149486" g_stop="149610" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="462" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149611" i_stop="150679" i_length="1069">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="150680" g_stop="150909" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="692" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="150910" i_stop="151581" i_length="672">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="151582" g_stop="151621" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="732" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="151622" i_stop="151698" i_length="77">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="151699" g_stop="151790" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="824" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="151791" i_stop="152470" i_length="680">
            <donor d_prob="0.485" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="152471" g_stop="152890" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="1244" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-U328694" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1213</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149084" e_stop="149389"/>
          <exon e_start="149486" e_stop="149610"/>
          <exon e_start="150680" e_stop="150909"/>
          <exon e_start="151582" e_stop="151621"/>
          <exon e_start="151699" e_stop="151790"/>
          <exon e_start="152471" e_stop="152890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGTTTTCACTAGGGTTTAAATTCATCGTCTCCCTCGTTCCAACTGGAAAAAAGAACTGTTTCCTCTGTATCTCGTACTGGAACTTGTAAATTTGCATCACTAATTAGAAGTATATTTTGGATTAGAAGTGAAGTGAAGTGAAGGGAGAATCATGCTGTATATAATAGGTCTTGGATTGGGTGATGATAAAGATATAACTTTGAAAGGTCTTGAAGCAGTAAAAAAATGCAGCAAAGTATACATGGAAGCTTACACTTCACTTCTCTCTTTTGGGCTTTCTCCAAATGGTCTTTCCAATCTGGTTAGAAAAAAGCTACCGTCTTTTCTTGTAATTTTGTTTTCAGTTAGTGAAAAAAAAGAGAGTGATTTTGATGATAAAGTTTTGATCTTTTTTCAGGAAAATCTTTATGGAAGATCAATAACACTTGCAGATAGGGAAATGGTAGAGGAGAAAGCTGATGAGATCCTTAATGAAGCTAAAGCTTCTGACGTGGCTTTTCTAGTTGTTGGTGATCCTTTTGGGTATTCTTCATTTTTTTGATATGCTTATTTATTTGGATAATGAAGACCCTTTTGGATATTTGACTTTTAGTTGGTGTCAATTTTTTATCTTGGTTATGGTAGAAGGTTAGTAGTTAGGCGAGGATTGTCTCGCGGGTTAGGTTTGGGGTAGTATGGCGCCTGTATCTGTTTCCCCTTTGTTATCAGCAGAATTAGCAATTTTTGCGTAGTTTCTTGTCTTGCGGTTTACGTTGCTACCCCTTTGTGTCTTGTGTTTGGTTATCACATGACTTTGTTGCTGTTACTTTGTCCATTCCCTATATGCTTTGTGATGCTTCCTCCAATACATCTTTTATTTCTTTCCTTTTGTATGTTCTTTGATTTGTGTTACTTGAGCCGGGGGGTTCTTTGGGATACAGTCTCTCTACTTCCGTAAGGTAGGGATAAGGTATGCGTACACCTACTCTCCCCAGTCTTAGGTCAGTTCATGTAGCTTTGTTCAATCTTGTTTCACTTGGTAGTGGTTAATTTGGCAAAGAAGTAGATAGTATGCATGATTGCACCTATTCTGAATTGAACATTCACCTAGATTCTCTAAAATTGGGAACAATAATTGGTTGCTTCTTTAAGTTTCGATAATGTGCCAGCATATCATTGAACTTTGTTGCAAAGCACCCAGTAAATTATCAGTAATTTATCCTTCTAAGGTAGGAGGAGTTTTTGGAATAAGGACCTTTGTATTGTTTAAAAACTATGTTAATGCATTTCTCTTTCAATATTGGTTATGCCTTCTATTTGGAACTTTAATTGACAGTTGAAATCGCTTATAAGAGAAATCACGTAAATGTTATCGCTTATAACGGGATGACTTGTGGAAGTTCTCGAAAATGATGAACTTTGTTGATTTATGTTAGCAAAAGCTTAATTGGGTAATCTTCCTTAGGAGGAGAATATCTTCAACTGTCTTGTTTTGTTTATGGATTTAATAAACAAGTAAAATACAAAGATGGTTCTTTTCATGTTGACACATAGATGTTCTTTCACTTATCTACTTCCTTTCCTCTCCATCATATGTCAATATTCACTACAGAGCCACAACCCACACTGATATTGTCGTCCGTGCGAAGAAGTTGGGTGTGGATGTTAAGGTGATACACAATGCATCTGTGATGAATGCTGTTGGAGTGTGTGGCTTACAGCTCTACCATTATGGAGAGACAGTGTCCATACCGTTCTTCACTGAGACCTGGAGGCCGGATAGTTTCTATGAGAAGATTAGAGAAAACCGAAAGCTTGGACTACACACACTCTGCTTGTTAGGTAAGTGGCTATTTAACTACTTTGTTTGTTCTTATATTTGTGGTATCCGGGGCAACTTCTGTCACCTGTGACTAAACAACTGAGAAGCCTATTCTGTTCAGTAGCAAGTGTTATCAGGATAATCTTGCCTGTCAAGGTTAGCATATTTGTAGTTGGCATAACATTCTGTTACTCCTACGTTACTGCAGTGATAATACTGTAGGATAGTTTCTGTGGAAAATAGCTTAGCGCAAGGATGATAAAGCTTAACGACTCTCATTCTTGTTACGTCCTCAACCGATATACCATCCCCTTAGTGATTGTTATTTGGCTACATCATGAGTTATGTGTTACCATATATATTTCATATATATATGACTAAAAATTTTCAGTTGCCAGTTTTGCCTCTTTTACCAATCAAAACACTTCAGTTGACGGTCTATCATCTTTTGCTTTTAAGTGGAATATTTTCACCGAGCATACTTCTGGACTAGTTTTCAGAGGATTCATTCTCAACCTTAAACACCATTGTAGTGCTAACAAGGATATACGACATGAAATTAGATGTTTCTAGTTAAGTTTATGTATTACTGGTGACTTGTGAGGTTACAGAAGTACTTGATCGATCTTTTATTGCCTTACTTTTTGTGCAGTCTTCTTCATTCAATTGCATCTTCATCTTCTGATTTGCAGATATACGAGTGAAAGAACCAACCATCGAGTCTCTTTGCAGGTTAGACATCAATGTTGTTTCCATTTATTCTTAGACGAATCACTTGAAATAGTATGTGACCCTGATTTTATTCTCAGAGGAAAGAAGCAGTATGAACCTCCCAGATTTATGACAGTTAACACAGCAATTGAGCAGCTCTTAGAGGTTGAAGAAGCCCGTGGAGAATTTGGTATGTTCACGAATTCATGCTTCTGCTTGACAAAATGGTGGGGGTGGGGCGGGTGACTATTAATAGTCTACTTACCTTAGTTTATCCAAGTTTTCATTTTCAGCTATGTTGCTCGGACTCTCCAAAATTGTTGGGATCCTCCACAAAGCACTACTCTTAGAGTATCTAACATGCACCTGTCGATATTTTTAAAGAGTCTGAGCAACATAGGTTTTCAATAATTCACTGTGTGATCAAGATGTGATTTAGTTAATACAGATTTTGAAAACCTGTCCTTGTGACTTTGTGCTTAATTTGACATAAATCTCATTTACAGTTCAAGCATTCTCTCTTCTTTAGCGAAAAAGGAATCCGTACTGCTTGTGTAAATGTTTGCCAAACATGCCAGTACAATATCCATATTATAATTTCCCTTGACACGAGACATGACTAAGAGAGGTTGCAAGTCATTTTCCTGCTTTTATGAGCTCAATCTGAAGCGAACTAGTATGATAATGGATATGGTTTCGATATGCCTCTAACTTACGCCTTATTTACAATCATGACATACTTCTTGCGTATAATTGACATCTGGTTTTGTTTTAGCCCCGGCTTTGTGGCATTAATAGTTATAAAGAATGTTGTTTGACATTTATAGTGACTAAACGTTTCATTTTGCATTCCCGTTTTTAAAATTACAGTATACGGTGAAAATACAATCTGTGTTGGTTTTGCACGGCTGGGGAGTGAAGACCAAAAGGTGGTTGCTGGTTCAATGAAGCAACTTCTAACAGTCGACTTTGGGGCGCCATTGCATTGCTTAGTCATAGTTGGCAAAACACACCCTGTTGAAGAAGAAATGCTGGAATTTTATGGGCTTTAGAAAACGTATCACAGGATTGCAATAGCAAATACTGTATTCATGTGTTGCCTTTTGTACCATTCCATTCTTTTTGGTGACTATTTATTTAGGCATTAAGATGACTATGATGTATTTTTTGCTTTGTAAACTCTTCCCATCTTCAAGTGATTTTGACATATTTTCAAGAATTCTTAAATTTAAGATATTGTTGGTTATTTTTGTAATCTTTCACTAGTATTCTCAATACATTATATCAAAT</genome_strand>
        <mrna_strand>TTACAAGTTTTCACTAGGGTTTAAATTCATCGTCTCCCTCGTTCCAACTGGAAAAAAGAACTGTTTCCTCTGTATCTCGTACTGGAACTTGTAAATTTGCATCACTAATTAGAAGTATATTTTGGATTAAAAGTGAAGTGAAGTGAAGGGAGAATCATGCTGTATATAATAGGTCTTGGATTGGGTGATGATAAAGATATAACTTTGAAAGGTCTTGAAGCAGTAAAAAAATGCAGCAAAGTATACATGGAAGCTTACACTTCACTTCTCTCTTTTGGGCTTTCTCCAAATGGTCTTTCCAATCTG................................................................................................GAAAATCTTTATGGAAGATCAATAACACTTGCAGATAGGGAAATGGTAGAGGAGAAAGCTGATGAGATCCTTAATGAAGCTAAAGCTTCTGACGTGGCTTTTCTAGTTGTTGGTGATCCTTTTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACAACCCACACTGATATTGTCGTCCGTGCGAAGAAGTTGGGTGTGGATGTTAAGGTGATACACAATGCATCTGTGATGAATGCTGTTGGAGTGTGTGGCTTACAGCTCTACCATTATGGAGAGACAGTGTCCATACCGTTCTTCACTGAGACCTGGAGGCCGGATAGTTTCTATGAGAAGATTAGAGAAAACCGAAAGCTTGGACTACACACACTCTGCTTGTTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACGAGTGAAAGAACCAACCATCGAGTCTCTTTGCAG.............................................................................AGGAAAGAAGCAGTATGAACCTCCCAGATTTATGACAGTTAACACAGCAATTGAGCAGCTCTTAGAGGTTGAAGAAGCCCGTGGAGAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACGGTGAAAATACAATCTGTGTTGGTTTTGCACGGCTGGGGAGTGAAGACCAAAAGGTGGTTGCTGGTTCAATGAAGCAACTTCTAACAGTCGACTTTGGGGCGCCATTGCATTGCTTAGTCATAGTTGGCAAAACACACCCTGTTGAAGAAGAAATGCTGGAATTTTATGGGCTTTAGAAAACGTATCACAGGATTGCAATAGCAAATACTGTATTCATGTGTTGCCTTTTGTACCATTCCATTCTTTTTGGTGACTATTTATTTAGGCATTAAGATGACTATGATGTATTTTTTGCTTTGTAAACTCTTCCCATCTTCAAGTGATTTTGACATATTTTCAAGAATTCTTAAATTTAAGATATTGTTGGTTATTTTTGTAATCTTTCACTAGTATTCTCAATACATTATATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>28</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10994" PGL_stop="10842"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10994" e_stop="10842"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="10994" e_stop="10842" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10994" stop="10842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGAGAGTATTCTTTCTACTGTAGATCAACATCCACTGTTCAATGCCATAAGCCATGAACTTTTGAGTGAAACACTAGTACTGGAGTTGTGATGTTAAAAACATTGAAAATTTTGCATAATGTTTGCTTGATAGATGACATTGGGATTGAGA</gDNA_template>
            <first_frame> G  E  S  I  L  S  T  V  D  Q  H  P  L  F  N  A  I  S  H  E  L  L  S  E  T  L  V  L  E  L  *  C  *  K  H  *  K  F  C  I  M  F  A  *  *  M  T  L  G  L  R </first_frame>
            <second_frame>  E  R  V  F  F  L  L  *  I  N  I  H  C  S  M  P  *  A  M  N  F  *  V  K  H  *  Y  W  S  C  D  V  K  N  I  E  N  F  A  *  C  L  L  D  R  *  H  W  D  *   </second_frame>
            <third_frame>   R  E  Y  S  F  Y  C  R  S  T  S  T  V  Q  C  H  K  P  *  T  F  E  *  N  T  S  T  G  V  V  M  L  K  T  L  K  I  L  H  N  V  C  L  I  D  D  I  G  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0101P06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15320" PGL_stop="11335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15320" e_stop="14951"/>
            <exon e_start="14882" e_stop="14834"/>
            <exon e_start="14748" e_stop="14697"/>
            <exon e_start="12367" e_stop="12204"/>
            <exon e_start="11910" e_stop="11797"/>
            <exon e_start="11370" e_stop="11335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.994" e_score="0.974"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15320" e_stop="14951" e_length="370"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14950" i_stop="14883" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14882" e_stop="14834" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="14833" i_stop="14749" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14748" e_stop="14697" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.863">
            <gDNA_intron_boundary i_start="14696" i_stop="12368" i_length="2329"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12367" e_stop="12204" e_length="164"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.930">
            <gDNA_intron_boundary i_start="12203" i_stop="11911" i_length="293"/>
          </intron>
          <exon e_serial="5" e_score="0.974">
            <gDNA_exon_boundary e_start="11910" e_stop="11797" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.967" acc_prob="0.994">
            <gDNA_intron_boundary i_start="11796" i_stop="11371" i_length="426"/>
          </intron>
          <exon e_serial="6" e_score="0.972">
            <gDNA_exon_boundary e_start="11370" e_stop="11335" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15320" stop="14951"/>
              <exon start="14882" stop="14834"/>
              <exon start="14748" stop="14697"/>
              <exon start="12367" stop="12204"/>
              <exon start="11910" stop="11797"/>
              <exon start="11370" stop="11335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAATGGCTAATGTAATGAAGCCTCTGATGAATTGGCCAAAATGGCATCACTATTTATACGTTCGCGCTTCATTCATCCACTTTGTTCAATCTCAATCTCAATCTCCACTCTTCTCAACCTGCAATGTTCGCCGACTGCCGTCGTTCACGGCATCACCTTCCGGTTACCGGCAAGCTCATTTTCGTTCCGGCGCGGCACTTAAATCACGTGAAAGTCCATTACCGTTAGATCAATCAGAGGGCGACAGCGATTCCGATGAAAAAACAAGGAAGAGTCGTAACGAGAAGAAGCGTGAAGCTCGACGCGCCGTCCGGTGGGCTATGGATTTAGCTAAGTTCTCTGCTCCTCAAATTAAGCGCATTCTCAG : AGTGGCTTCAACGGAGCAAGAGGTATACGAAGCCGTTATGCTGGCCAAG : AGACTAGGTCCTGATGTACGAGAAGGAAAGCGAAGGCAATTCAGTTACATAG : GTAGATTATTGCGAGAAGTTAAGCCTGAATTGATGGATGGTTTAATTCAGGCAACAAAAGATGGAGACCAAACTAAATTTCAGGCTTTATCTGGTTCGGAACTTTCGGCTACCGAAGATGTTGATGAGGAAGTTGAAGAGACTGAATATGAGGATGACGAAGAG : AGTTCTGAGGACAATATTGCTTTAGCCGATAGATGGTTTGATGGCTTGGTCAATAAGGACGTTGACATCTCTAAAGAAATCTATTCTCTAAGTGAGGTTGATTTTGATCGCCAG : GAGTTACGTGGTCTTGTTAGGAATGTACAATCAATA</gDNA_template>
            <first_frame> Q  K  W  L  M  *  *  S  L  *  *  I  G  Q  N  G  I  T  I  Y  T  F  A  L  H  S  S  T  L  F  N  L  N  L  N  L  H  S  S  Q  P  A  M  F  A  D  C  R  R  S  R  H  H  L  P  V  T  G  K  L  I  F  V  P  A  R  H  L  N  H  V  K  V  H  Y  R  *  I  N  Q  R  A  T  A  I  P  M  K  K  Q  G  R  V  V  T  R  R  S  V  K  L  D  A  P  S  G  G  L  W  I  *  L  S  S  L  L  L  K  L  S  A  F  S   : E  W  L  Q  R  S  K  R  Y  T  K  P  L  C  W  P  R :   D  *  V  L  M  Y  E  K  E  S  E  G  N  S  V  T  *  :  V  D  Y  C  E  K  L  S  L  N  *  W  M  V  *  F  R  Q  Q  K  M  E  T  K  L  N  F  R  L  Y  L  V  R  N  F  R  L  P  K  M  L  M  R  K  L  K  R  L  N  M  R  M  T  K  R :   V  L  R  T  I  L  L  *  P  I  D  G  L  M  A  W  S  I  R  T  L  T  S  L  K  K  S  I  L  *  V  R  L  I  L  I  A  R :   S  Y  V  V  L  L  G  M  Y  N  Q   </first_frame>
            <second_frame>  K  N  G  *  C  N  E  A  S  D  E  L  A  K  M  A  S  L  F  I  R  S  R  F  I  H  P  L  C  S  I  S  I  S  I  S  T  L  L  N  L  Q  C  S  P  T  A  V  V  H  G  I  T  F  R  L  P  A  S  S  F  S  F  R  R  G  T  *  I  T  *  K  S  I  T  V  R  S  I  R  G  R  Q  R  F  R  *  K  N  K  E  E  S  *  R  E  E  A  *  S  S  T  R  R  P  V  G  Y  G  F  S  *  V  L  C  S  S  N  *  A  H  S  Q  :  S  G  F  N  G  A  R  G  I  R  S  R  Y  A  G  Q   : E  T  R  S  *  C  T  R  R  K  A  K  A  I  Q  L  H  R :   *  I  I  A  R  S  *  A  *  I  D  G  W  F  N  S  G  N  K  R  W  R  P  N  *  I  S  G  F  I  W  F  G  T  F  G  Y  R  R  C  *  *  G  S  *  R  D  *  I  *  G  *  R  R   : E  F  *  G  Q  Y  C  F  S  R  *  M  V  *  W  L  G  Q  *  G  R  *  H  L  *  R  N  L  F  S  K  *  G  *  F  *  S  P   : G  V  T  W  S  C  *  E  C  T  I  N  </second_frame>
            <third_frame>   K  M  A  N  V  M  K  P  L  M  N  W  P  K  W  H  H  Y  L  Y  V  R  A  S  F  I  H  F  V  Q  S  Q  S  Q  S  P  L  F  S  T  C  N  V  R  R  L  P  S  F  T  A  S  P  S  G  Y  R  Q  A  H  F  R  S  G  A  A  L  K  S  R  E  S  P  L  P  L  D  Q  S  E  G  D  S  D  S  D  E  K  T  R  K  S  R  N  E  K  K  R  E  A  R  R  A  V  R  W  A  M  D  L  A  K  F  S  A  P  Q  I  K  R  I  L  R :   V  A  S  T  E  Q  E  V  Y  E  A  V  M  L  A  K  :  R  L  G  P  D  V  R  E  G  K  R  R  Q  F  S  Y  I   : G  R  L  L  R  E  V  K  P  E  L  M  D  G  L  I  Q  A  T  K  D  G  D  Q  T  K  F  Q  A  L  S  G  S  E  L  S  A  T  E  D  V  D  E  E  V  E  E  T  E  Y  E  D  D  E  E  :  S  S  E  D  N  I  A  L  A  D  R  W  F  D  G  L  V  N  K  D  V  D  I  S  K  E  I  Y  S  L  S  E  V  D  F  D  R  Q  :  E  L  R  G  L  V  R  N  V  Q  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15318" stop="14951"/>
                    <exon start="14882" stop="14834"/>
                    <exon start="14748" stop="14697"/>
                    <exon start="12367" stop="12204"/>
                    <exon start="11910" stop="11797"/>
                    <exon start="11370" stop="11335"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMANVMKPLMNWPKWHHYLYVRASFIHFVQSQSQSPLFSTCNVRRLPSFTASPSGYRQAHFRSGAALKSRESPLPLDQSEGDSDSDEKTRKSRNEKKREARRAVRWAMDLAKFSAPQIKRILRVASTEQEVYEAVMLAKRLGPDVREGKRRQFSYIGRLLREVKPELMDGLIQATKDGDQTKFQALSGSELSATEDVDEEVEETEYEDDEESSEDNIALADRWFDGLVNKDVDISKEIYSLSEVDFDRQELRGLVRNVQSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="18614" PGL_stop="17741"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18614" e_stop="17888"/>
            <exon e_start="17825" e_stop="17741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.990"/>
          <exon-only e_score="0.882"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="18614" e_stop="17888" e_length="727"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17887" i_stop="17826" i_length="62"/>
          </intron>
          <exon e_serial="2" e_score="0.882">
            <gDNA_exon_boundary e_start="17825" e_stop="17741" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18614" stop="17888"/>
              <exon start="17825" stop="17741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318529" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACATTCACTCACACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACCACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGACCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAAATTTGTTATGTGATTTGGGATTAAGATAAA : ATTAGAATTTACGATATACTTACCTTTTTTTTATAACCACATAAATAATCTTTAATATTTAGTCAAATACTATTACGTACGTAAT</gDNA_template>
            <first_frame> N  I  H  S  H  A  I  I  F  S  N  N  *  P  N  S  S  R  T  I  I  P  N  L  W  L  L  L  L  F  F  S  P  L  Q  L  P  A  L  N  S  P  P  L  H  H  R  G  V  L  L  A  S  S  S  G  R  S  L  F  P  P  R  T  P  L  R  R  G  L  L  L  L  L  L  V  A  L  Q  S  P  H  I  H  R  Y  T  K  F  *  G  F  N  L  E  L  I  L  M  K  L  S  L  L  T  G  N  *  P  E  F  C  I  Q  M  F  V  I  R  R  R  R  T  L  *  E  S  N  Q  R  M  L  L  F  P  I  R  K  N  V  L  I  M  I  G  T  Y  L  E  I  E  L  Q  G  L  L  I  S  Q  R  R  E  L  A  A  I  I  L  F  A  E  D  G  K  P  I  S  V  G  R  I  F  R  N  L  P  P  D  *  S  Q  N  L  D  E  H  H  L  I  S  D  R  N  S  N  L  K  F  L  I  T  I  I  R  P  V  I  C  T  V  H  V  N  V  T  L  C  I  *  Y  F  K  N  L  L  C  D  L  G  L  R  *   : N  *  N  L  R  Y  T  Y  L  F  F  I  T  T  *  I  I  F  N  I  *  S  N  T  I  T  Y  V   </first_frame>
            <second_frame>  T  F  T  H  T  L  L  F  S  P  I  T  N  Q  I  L  L  E  Q  L  F  Q  I  Y  G  F  F  F  F  S  S  L  H  F  N  Y  R  L  *  T  L  R  R  C  T  T  A  E  F  C  *  L  Q  A  A  A  V  L  C  F  R  R  V  L  H  C  G  E  D  F  Y  C  Y  Y  *  *  L  Y  N  R  L  T  Y  I  V  I  R  S  F  R  D  S  I  W  S  *  F  S  *  N  *  V  C  L  P  E  I  S  Q  N  F  A  S  R  C  S  *  F  V  G  G  G  L  Y  K  S  P  I  S  V  C  Y  S  F  R  S  G  K  T  C  *  L  *  S  E  P  I  W  K  *  N  C  K  A  C  *  F  L  N  G  G  S  S  Q  P  L  Y  C  S  P  R  M  G  N  R  S  V  L  V  E  F  F  E  I  S  R  P  I  S  H  K  I  *  M  S  T  T  *  F  L  I  V  T  Q  I  *  N  F  L  *  R  *  *  D  P  L  F  V  Q  Y  M  *  M  *  L  Y  V  Y  N  T  L  K  I  C  Y  V  I  W  D  *  D  K  :  I  R  I  Y  D  I  L  T  F  F  L  *  P  H  K  *  S  L  I  F  S  Q  I  L  L  R  T  *  </second_frame>
            <third_frame>   H  S  L  T  R  Y  Y  F  L  Q  *  L  T  K  F  F  *  N  N  Y  S  K  S  M  A  S  S  S  F  L  L  S  T  S  I  T  G  S  K  L  S  A  A  A  P  P  R  S  S  V  S  F  K  Q  R  P  F  S  V  S  A  A  Y  S  T  A  E  R  T  S  T  A  T  T  S  S  S  T  I  A  S  H  T  S  L  Y  E  V  L  G  I  Q  F  G  A  N  S  H  E  I  K  S  A  Y  R  K  L  A  R  I  L  H  P  D  V  R  N  S  S  A  E  D  F  I  R  V  Q  S  A  Y  A  T  L  S  D  P  E  K  R  A  N  Y  D  R  N  L  F  G  N  R  I  A  R  P  V  D  F  S  T  A  G  A  R  S  H  Y  T  V  R  R  G  W  E  T  D  Q  C  W  *  N  F  S  K  S  P  A  R  L  V  T  K  F  R  *  A  P  L  N  F  *  S  *  L  K  S  E  I  S  Y  N  D  N  K  T  R  Y  L  Y  S  T  C  K  C  D  F  M  Y  I  I  L  *  K  F  V  M  *  F  G  I  K  I  K :   L  E  F  T  I  Y  L  P  F  F  Y  N  H  I  N  N  L  *  Y  L  V  K  Y  Y  Y  V  R  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18561" stop="18076"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNYSKSMASSSFLLSTSITGSKLSAAAPPRSSVSFKQRPFSVSAAYSTAERTSTATTSSSTIASHTSLYEVLGIQFGANSHEIKSAYRKLARILHPDVRNSSAEDFIRVQSAYATLSDPEKRANYDRNLFGNRIARPVDFSTAGARSHYTVRRGWETDQCW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="25711" PGL_stop="24013"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25711" e_stop="25613"/>
            <exon e_start="25502" e_stop="25393"/>
            <exon e_start="24951" e_stop="24681"/>
            <exon e_start="24589" e_stop="24487"/>
            <exon e_start="24213" e_stop="24013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.501" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25711" e_stop="25613" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25612" i_stop="25503" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25502" e_stop="25393" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.865">
            <gDNA_intron_boundary i_start="25392" i_stop="24952" i_length="441"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24951" e_stop="24681" e_length="271"/>
          </exon>
          <intron i_serial="3" don_prob="0.501" acc_prob="0.985">
            <gDNA_intron_boundary i_start="24680" i_stop="24590" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24589" e_stop="24487" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.984">
            <gDNA_intron_boundary i_start="24486" i_stop="24214" i_length="273"/>
          </intron>
          <exon e_serial="5" e_score="0.965">
            <gDNA_exon_boundary e_start="24213" e_stop="24013" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25711" stop="25613"/>
              <exon start="25502" stop="25393"/>
              <exon start="24951" stop="24681"/>
              <exon start="24589" stop="24487"/>
              <exon start="24213" stop="24013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332923" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTACAATTTCTACTTTTGTTAGTGTCCATTCAAAACTACTTCACTTTGATTGGGTTGTTTCAATTTCCTCTAATGCACTCATTGGAGATCCTAAAGAG : GTTATTATGATCAATAATCAGTTTCCAGGGCCCCTTTTGAACACAACAACAAATGATGTGGTCATTGTCAATGTTTATAACAACTTGACTGAACCTTTCCTCATGACATG : GAATGGAGTGCAATTAAGGAGGAATTCATGGCAAGATGGAGTTGAAGGAACCAATTGTCCAATTATGCCTGGAAAAAATTGGACATACAAATTTCAGATGAAAGATCAGATTGGAAGTTTCTTCTATTTTCCTTCACTCTTTTTCCAGAAAGCTGCTGGAGGCTATGGTCCTATTCGAATCAACAACGTTGAGACTGTTCCTCTTCCATTTACGCGTCCTGATTATGAATATGATATACTAATTGGAGATTGGTATTTTGATGAGTATAAG : GACTTGAGAATTTCTCTAGAAGATGGATGCAAAATGCCTTTTCCAGATGCCATTCTCATCAATGGTATGAGATCTGATCAAGCTACCTTTGAGTTTCAACCCG : GGGCTACCTATAGATTGAGAATCTCGAACATAGGATTAAAAACAACCTTAAATTTCAAAATCCAGGATCATGAAATGCTTTTGGTGGAGACTGAAGGAGCCTACACTTCAAAAAAGTACCACCAAAGTCTAGACATCCATGTTGGTCAATCTTATTCTGTTCTTGTTACTGCAAAGAACCACAGCTATAATAGCTCGTATC</gDNA_template>
            <first_frame> F  T  I  S  T  F  V  S  V  H  S  K  L  L  H  F  D  W  V  V  S  I  S  S  N  A  L  I  G  D  P  K  E  :  V  I  M  I  N  N  Q  F  P  G  P  L  L  N  T  T  T  N  D  V  V  I  V  N  V  Y  N  N  L  T  E  P  F  L  M  T  W :   N  G  V  Q  L  R  R  N  S  W  Q  D  G  V  E  G  T  N  C  P  I  M  P  G  K  N  W  T  Y  K  F  Q  M  K  D  Q  I  G  S  F  F  Y  F  P  S  L  F  F  Q  K  A  A  G  G  Y  G  P  I  R  I  N  N  V  E  T  V  P  L  P  F  T  R  P  D  Y  E  Y  D  I  L  I  G  D  W  Y  F  D  E  Y  K  :  D  L  R  I  S  L  E  D  G  C  K  M  P  F  P  D  A  I  L  I  N  G  M  R  S  D  Q  A  T  F  E  F  Q  P   : G  A  T  Y  R  L  R  I  S  N  I  G  L  K  T  T  L  N  F  K  I  Q  D  H  E  M  L  L  V  E  T  E  G  A  Y  T  S  K  K  Y  H  Q  S  L  D  I  H  V  G  Q  S  Y  S  V  L  V  T  A  K  N  H  S  Y  N  S  S  Y  </first_frame>
            <second_frame>  L  Q  F  L  L  L  L  V  S  I  Q  N  Y  F  T  L  I  G  L  F  Q  F  P  L  M  H  S  L  E  I  L  K  R :   L  L  *  S  I  I  S  F  Q  G  P  F  *  T  Q  Q  Q  M  M  W  S  L  S  M  F  I  T  T  *  L  N  L  S  S  *  H   : G  M  E  C  N  *  G  G  I  H  G  K  M  E  L  K  E  P  I  V  Q  L  C  L  E  K  I  G  H  T  N  F  R  *  K  I  R  L  E  V  S  S  I  F  L  H  S  F  S  R  K  L  L  E  A  M  V  L  F  E  S  T  T  L  R  L  F  L  F  H  L  R  V  L  I  M  N  M  I  Y  *  L  E  I  G  I  L  M  S  I  R :   T  *  E  F  L  *  K  M  D  A  K  C  L  F  Q  M  P  F  S  S  M  V  *  D  L  I  K  L  P  L  S  F  N  P  :  G  L  P  I  D  *  E  S  R  T  *  D  *  K  Q  P  *  I  S  K  S  R  I  M  K  C  F  W  W  R  L  K  E  P  T  L  Q  K  S  T  T  K  V  *  T  S  M  L  V  N  L  I  L  F  L  L  L  Q  R  T  T  A  I  I  A  R  I </second_frame>
            <third_frame>   Y  N  F  Y  F  C  *  C  P  F  K  T  T  S  L  *  L  G  C  F  N  F  L  *  C  T  H  W  R  S  *  R   : G  Y  Y  D  Q  *  S  V  S  R  A  P  F  E  H  N  N  K  *  C  G  H  C  Q  C  L  *  Q  L  D  *  T  F  P  H  D  M  :  E  W  S  A  I  K  E  E  F  M  A  R  W  S  *  R  N  Q  L  S  N  Y  A  W  K  K  L  D  I  Q  I  S  D  E  R  S  D  W  K  F  L  L  F  S  F  T  L  F  P  E  S  C  W  R  L  W  S  Y  S  N  Q  Q  R  *  D  C  S  S  S  I  Y  A  S  *  L  *  I  *  Y  T  N  W  R  L  V  F  *  *  V  *   : G  L  E  N  F  S  R  R  W  M  Q  N  A  F  S  R  C  H  S  H  Q  W  Y  E  I  *  S  S  Y  L  *  V  S  T  R :   G  Y  L  *  I  E  N  L  E  H  R  I  K  N  N  L  K  F  Q  N  P  G  S  *  N  A  F  G  G  D  *  R  S  L  H  F  K  K  V  P  P  K  S  R  H  P  C  W  S  I  L  F  C  S  C  Y  C  K  E  P  Q  L  *  *  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25711" stop="25613"/>
                    <exon start="25502" stop="25393"/>
                    <exon start="24951" stop="24681"/>
                    <exon start="24589" stop="24487"/>
                    <exon start="24213" stop="24014"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTISTFVSVHSKLLHFDWVVSISSNALIGDPKEVIMINNQFPGPLLNTTTNDVVIVNVYNNLTEPFLMTWNGVQLRRNSWQDGVEGTNCPIMPGKNWTYKFQMKDQIGSFFYFPSLFFQKAAGGYGPIRINNVETVPLPFTRPDYEYDILIGDWYFDEYKDLRISLEDGCKMPFPDAILINGMRSDQATFEFQPGATYRLRISNIGLKTTLNFKIQDHEMLLVETEGAYTSKKYHQSLDIHVGQSYSVLVTAKNHSYNSSY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="29124" PGL_stop="26433"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29124" e_stop="29057"/>
            <exon e_start="28253" e_stop="28150"/>
            <exon e_start="28056" e_stop="27940"/>
            <exon e_start="27803" e_stop="27727"/>
            <exon e_start="27611" e_stop="27567"/>
            <exon e_start="27109" e_stop="26433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.890" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.399" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="0.106" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29124" e_stop="29057" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.890" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29056" i_stop="28254" i_length="803"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28253" e_stop="28150" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.399" acc_prob="0.969">
            <gDNA_intron_boundary i_start="28149" i_stop="28057" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="28056" e_stop="27940" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27939" i_stop="27804" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27803" e_stop="27727" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.106" acc_prob="0.990">
            <gDNA_intron_boundary i_start="27726" i_stop="27612" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27611" e_stop="27567" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.962" acc_prob="0.972">
            <gDNA_intron_boundary i_start="27566" i_stop="27110" i_length="457"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="27109" e_stop="26433" e_length="677"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29124" stop="29057"/>
              <exon start="28253" stop="28150"/>
              <exon start="28056" stop="27940"/>
              <exon start="27803" stop="27727"/>
              <exon start="27611" stop="27567"/>
              <exon start="27109" stop="26433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGGAGAAGCTTGTTGACATTGTTACGTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAACG : GATTGACATCTGCTGTCAAGGAGCCTGTGAAGAAACAAGAAAGATTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATT : GCTTCACGGCCCACCGCTCTTCCCCCTAACATGAGGGATGGATTATATAATGGATTGCCTCCTTCCATAAAAACGGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAG : CTCACAATTCCGCAGATTAAAGCAGAAATGGAAAAAACTCTTCACTGGCTTGTCCCAGTCGCTGCAGATACTACGAA : AGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAACACCGG : AAGCGAGTTTGGCAAGAAGAACCCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCTGACAAACAGAAAATGGACTACCATGTCCTTGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATATAATGGGCCCAAGGCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGG</gDNA_template>
            <first_frame> C  G  E  A  C  *  H  C  Y  V  Y  T  S  S  N  C  G  S  I  W  G  Q  R :   I  D  I  C  C  Q  G  A  C  E  E  T  R  K  I  G  S  S  W  S  G  F  T  L  C  *  L  S  Y  S  N  *  *  H   : C  F  T  A  H  R  S  S  P  *  H  E  G  W  I  I  *  W  I  A  S  F  H  K  N  G  P  S  F  T  S  A  G  G  *  C  K  G  R   : A  H  N  S  A  D  *  S  R  N  G  K  N  S  S  L  A  C  P  S  R  C  R  Y  Y  E  :  S  T  P  R  L  W  M  G  W  R  V  G  Q  H  R  :  K  R  V  W  Q  E  E  P  S  T  S  F  P  H  S  T  A  D  T  L  P  C  *  Q  T  E  N  G  L  P  C  P  *  T  S  D  M  A  S  P  F  D  Q  P  G  K  I  *  W  A  Q  G  F  S  R  T  I  T  N  T  Q  R  T  *  S  A  D  *  V  D  D  E  H  Q  L  K  N  T  *  D  S  D  F  S  R  R  *  D  F  T  R  E  S  D  E  T  E  M  F  G  S  W  K  K  Q  E  S  G  V  S  V  A  Q  E  S  A  K  G  V  G  A  K  *  K  H  G  *  L  P  S  Y  R  L  S  T  S  K  G  Y  C  F  G  Y  I  R  W  L  T  L  A  F  *  V  A  K  E  R  S  Q  A  K  K  R  F  I  F  L  F  S  *  F  L  A  P  S  S  Y  G  T  K  A  S  L  Y  I  V  S  P  S  Y  G  D  W  E  K  C  Y  T  V  A  Y  Y  Y  R  Q  N  T  F  R  F  *  W  N  *  M  F  M  D  D  R  E  *  C  L  F   </first_frame>
            <second_frame>  V  E  K  L  V  D  I  V  T  Y  I  H  Q  A  I  V  E  A  F  G  D  N   : G  L  T  S  A  V  K  E  P  V  K  K  Q  E  R  L  G  V  A  G  L  A  L  H  Y  A  N  L  V  T  Q  I  D  N  I  :  A  S  R  P  T  A  L  P  P  N  M  R  D  G  L  Y  N  G  L  P  P  S  I  K  T  A  L  R  S  R  L  Q  A  V  D  A  K  E  E  :  L  T  I  P  Q  I  K  A  E  M  E  K  T  L  H  W  L  V  P  V  A  A  D  T  T  K :   A  H  Q  G  F  G  W  V  G  E  W  A  N  T  G :   S  E  F  G  K  K  N  P  P  Q  V  S  L  I  R  L  Q  T  L  Y  H  A  D  K  Q  K  M  D  Y  H  V  L  E  L  V  T  W  L  H  R  L  I  S  L  V  R  Y  N  G  P  K  A  F  P  G  R  S  P  T  R  K  G  L  N  L  Q  T  E  L  M  M  N  T  N  S  K  T  P  K  I  Q  I  S  L  E  D  R  T  L  L  E  K  V  M  K  Q  K  C  L  V  P  G  R  S  K  S  Q  E  F  L  L  P  K  N  R  Q  K  V  W  A  L  S  R  S  M  G  N  S  P  R  T  D  F  Q  H  P  K  A  T  V  L  D  I  L  D  G  L  H  *  H  F  E  L  L  K  R  D  L  K  Q  K  K  G  S  F  F  C  F  L  D  S  *  L  P  P  P  M  E  L  K  P  L  C  I  *  S  L  H  H  M  V  I  G  K  N  V  I  L  *  H  I  I  I  A  K  I  H  L  D  S  S  G  I  E  C  S  W  M  T  G  N  D  V  Y  L  </second_frame>
            <third_frame>   W  R  S  L  L  T  L  L  R  I  Y  I  K  Q  L  W  K  H  L  G  T  T  :  D  *  H  L  L  S  R  S  L  *  R  N  K  K  D  W  E  *  L  V  W  L  Y  T  M  L  T  *  L  L  K  L  I  T  L :   L  H  G  P  P  L  F  P  L  T  *  G  M  D  Y  I  M  D  C  L  L  P  *  K  R  P  F  V  H  V  C  R  R  L  M  Q  R  K  S :   S  Q  F  R  R  L  K  Q  K  W  K  K  L  F  T  G  L  S  Q  S  L  Q  I  L  R   : K  H  T  K  A  L  D  G  L  E  S  G  P  T  P   : E  A  S  L  A  R  R  T  L  H  K  F  P  S  F  D  C  R  H  S  T  M  L  T  N  R  K  W  T  T  M  S  L  N  *  *  H  G  F  T  V  *  S  A  W  *  D  I  M  G  P  R  L  F  Q  D  D  H  Q  H  A  K  D  L  I  C  R  L  S  *  *  *  T  P  T  Q  K  H  L  R  F  R  F  L  S  K  I  G  L  Y  *  R  K  *  *  N  R  N  V  W  F  L  E  E  A  R  V  R  S  F  C  C  P  R  I  G  K  R  C  G  R  *  V  E  A  W  V  T  P  L  V  P  T  F  N  I  Q  R  L  L  F  W  I  Y  *  M  A  Y  I  S  I  L  S  C  *  R  E  I  S  S  K  K  K  V  H  F  F  V  F  L  I  L  S  S  L  L  L  W  N  *  S  L  F  V  Y  S  L  S  I  I  W  *  L  G  K  M  L  Y  C  S  I  L  L  S  P  K  Y  I  *  I  L  V  E  L  N  V  H  G  *  Q  G  M  M  F  I  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29123" stop="29057"/>
                    <exon start="28253" stop="28150"/>
                    <exon start="28056" stop="27940"/>
                    <exon start="27803" stop="27727"/>
                    <exon start="27611" stop="27567"/>
                    <exon start="27109" stop="26662"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEKLVDIVTYIHQAIVEAFGDNGLTSAVKEPVKKQERLGVAGLALHYANLVTQIDNIASRPTALPPNMRDGLYNGLPPSIKTALRSRLQAVDAKEELTIPQIKAEMEKTLHWLVPVAADTTKAHQGFGWVGEWANTGSEFGKKNPPQVSLIRLQTLYHADKQKMDYHVLELVTWLHRLISLVRYNGPKAFPGRSPTRKGLNLQTELMMNTNSKTPKIQISLEDRTLLEKVMKQKCLVPGRSKSQEFLLPKNRQKVWALSRSMGNSPRTDFQHPKATVLDILDGLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="43239" PGL_stop="47034"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43239" e_stop="43431"/>
            <exon e_start="43525" e_stop="43612"/>
            <exon e_start="43735" e_stop="43921"/>
            <exon e_start="44019" e_stop="44109"/>
            <exon e_start="45622" e_stop="45657"/>
            <exon e_start="45785" e_stop="45883"/>
            <exon e_start="46589" e_stop="46719"/>
            <exon e_start="46870" e_stop="46918"/>
            <exon e_start="47005" e_stop="47034"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.549" e_score="0.995"/>
          <exon-intron don_prob="0.923" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.765" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.307" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="43239" e_stop="43431" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.549">
            <gDNA_intron_boundary i_start="43432" i_stop="43524" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43525" e_stop="43612" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.923" acc_prob="0.992">
            <gDNA_intron_boundary i_start="43613" i_stop="43734" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43735" e_stop="43921" e_length="187"/>
          </exon>
          <intron i_serial="3" don_prob="0.803" acc_prob="0.961">
            <gDNA_intron_boundary i_start="43922" i_stop="44018" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44019" e_stop="44109" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.997">
            <gDNA_intron_boundary i_start="44110" i_stop="45621" i_length="1512"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45622" e_stop="45657" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.765">
            <gDNA_intron_boundary i_start="45658" i_stop="45784" i_length="127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45785" e_stop="45883" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45884" i_stop="46588" i_length="705"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46589" e_stop="46719" e_length="131"/>
          </exon>
          <intron i_serial="7" don_prob="0.307" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46720" i_stop="46869" i_length="150"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="46870" e_stop="46918" e_length="49"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46919" i_stop="47004" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="47005" e_stop="47034" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43239" stop="43431"/>
              <exon start="43525" stop="43612"/>
              <exon start="43735" stop="43921"/>
              <exon start="44019" stop="44109"/>
              <exon start="45622" stop="45657"/>
              <exon start="45785" stop="45883"/>
              <exon start="46589" stop="46719"/>
              <exon start="46870" stop="46918"/>
              <exon start="47005" stop="47034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344314" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAATTATCAGACGGAGCCCGTATCCATCCGTATCGTTGCCGGATTAAAAAAAGCACCGATTGAACTCCGACGGCTGTTAAAGCAATCTGTGTGAAATTCCGACGATTCTCCGCCATGGCGATCGACGCAGTCCCTCCACTCATCGCTGCACAGCTGAATTACATAGTCACTCACGCTCCATTCTCTGTTAAG : GTAGAAAATATGTGTTCAGGATGCAAAAACACTGGTTTGCTTGATCGGTTCTCGTTAGTAATCCCCTTCTGTCTTGATTTCATCAAAT : GGGATGTGATGTACAATGCTGTGTATCCATTAGCAGCACCAGATGTTATATTTGGGTCGGAAGATGAAACTTTTCGACCTTATCATGCTGTCAGTGATGCTAGTGACTCAAAGTCATTGAAGAACCCTCTTACTGACTGGAATAATAGAGATCCGACTAGTCTTTTCACTCTGGTTCTGCAGCTGAG : GGAGTTGTACAAGGCGTACCAAAAGAAAAGAGTTGAACAAGTTGATGATGACAGGTTGAAGTTTGAAATCAGCACAATGCTTTCCAGAGAG : GGGATTGAAATGTCTTTGAGTTCAAATATTGATAAG : CCAGAAGAGGTTAAATTTGCTGTCCCACTGCTGGATTTGGATTTAAACAAAATGGTTGCAGGATCCACTTGGCGCCATCCACAGAAGATATACCTACAG : GTTATATATCCAGTTGGCAGGAAATACTCCAGTGCTCCTTCTGCCCCACGTTTGAAATTGGTATCTTCTCCTGAATTGAAGGCTGTCTTCTCAATTGATGATTTCAGGCTTCCTCCATGGTTGGATGGAAT : GTGTATGGCTGAGTACCTTCCGACATTAGAAGAGATGCTTGAATCACAG : ATTAAAGATGCAGTTGCATCCATTGAAAGT</gDNA_template>
            <first_frame> R  I  I  R  R  S  P  Y  P  S  V  S  L  P  D  *  K  K  H  R  L  N  S  D  G  C  *  S  N  L  C  E  I  P  T  I  L  R  H  G  D  R  R  S  P  S  T  H  R  C  T  A  E  L  H  S  H  S  R  S  I  L  C  *   : G  R  K  Y  V  F  R  M  Q  K  H  W  F  A  *  S  V  L  V  S  N  P  L  L  S  *  F  H  Q  M :   G  C  D  V  Q  C  C  V  S  I  S  S  T  R  C  Y  I  W  V  G  R  *  N  F  S  T  L  S  C  C  Q  *  C  *  *  L  K  V  I  E  E  P  S  Y  *  L  E  *  *  R  S  D  *  S  F  H  S  G  S  A  A  E  :  G  V  V  Q  G  V  P  K  E  K  S  *  T  S  *  *  *  Q  V  E  V  *  N  Q  H  N  A  F  Q  R   : G  D  *  N  V  F  E  F  K  Y  *  *   : A  R  R  G  *  I  C  C  P  T  A  G  F  G  F  K  Q  N  G  C  R  I  H  L  A  P  S  T  E  D  I  P  T   : G  Y  I  S  S  W  Q  E  I  L  Q  C  S  F  C  P  T  F  E  I  G  I  F  S  *  I  E  G  C  L  L  N  *  *  F  Q  A  S  S  M  V  G  W  N  :  V  Y  G  *  V  P  S  D  I  R  R  D  A  *  I  T   : D  *  R  C  S  C  I  H  *  K  </first_frame>
            <second_frame>  E  L  S  D  G  A  R  I  H  P  Y  R  C  R  I  K  K  S  T  D  *  T  P  T  A  V  K  A  I  C  V  K  F  R  R  F  S  A  M  A  I  D  A  V  P  P  L  I  A  A  Q  L  N  Y  I  V  T  H  A  P  F  S  V  K  :  V  E  N  M  C  S  G  C  K  N  T  G  L  L  D  R  F  S  L  V  I  P  F  C  L  D  F  I  K   : W  D  V  M  Y  N  A  V  Y  P  L  A  A  P  D  V  I  F  G  S  E  D  E  T  F  R  P  Y  H  A  V  S  D  A  S  D  S  K  S  L  K  N  P  L  T  D  W  N  N  R  D  P  T  S  L  F  T  L  V  L  Q  L  R :   E  L  Y  K  A  Y  Q  K  K  R  V  E  Q  V  D  D  D  R  L  K  F  E  I  S  T  M  L  S  R  E  :  G  I  E  M  S  L  S  S  N  I  D  K  :  P  E  E  V  K  F  A  V  P  L  L  D  L  D  L  N  K  M  V  A  G  S  T  W  R  H  P  Q  K  I  Y  L  Q  :  V  I  Y  P  V  G  R  K  Y  S  S  A  P  S  A  P  R  L  K  L  V  S  S  P  E  L  K  A  V  F  S  I  D  D  F  R  L  P  P  W  L  D  G  M :   C  M  A  E  Y  L  P  T  L  E  E  M  L  E  S  Q  :  I  K  D  A  V  A  S  I  E  S </second_frame>
            <third_frame>   N  Y  Q  T  E  P  V  S  I  R  I  V  A  G  L  K  K  A  P  I  E  L  R  R  L  L  K  Q  S  V  *  N  S  D  D  S  P  P  W  R  S  T  Q  S  L  H  S  S  L  H  S  *  I  T  *  S  L  T  L  H  S  L  L  R :   *  K  I  C  V  Q  D  A  K  T  L  V  C  L  I  G  S  R  *  *  S  P  S  V  L  I  S  S  N  :  G  M  *  C  T  M  L  C  I  H  *  Q  H  Q  M  L  Y  L  G  R  K  M  K  L  F  D  L  I  M  L  S  V  M  L  V  T  Q  S  H  *  R  T  L  L  L  T  G  I  I  E  I  R  L  V  F  S  L  W  F  C  S  *   : G  S  C  T  R  R  T  K  R  K  E  L  N  K  L  M  M  T  G  *  S  L  K  S  A  Q  C  F  P  E  R :   G  L  K  C  L  *  V  Q  I  L  I  S :   Q  K  R  L  N  L  L  S  H  C  W  I  W  I  *  T  K  W  L  Q  D  P  L  G  A  I  H  R  R  Y  T  Y  R :   L  Y  I  Q  L  A  G  N  T  P  V  L  L  L  P  H  V  *  N  W  Y  L  L  L  N  *  R  L  S  S  Q  L  M  I  S  G  F  L  H  G  W  M  E   : C  V  W  L  S  T  F  R  H  *  K  R  C  L  N  H  R :   L  K  M  Q  L  H  P  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43303" stop="43431"/>
                    <exon start="43525" stop="43612"/>
                    <exon start="43735" stop="43921"/>
                    <exon start="44019" stop="44109"/>
                    <exon start="45622" stop="45657"/>
                    <exon start="45785" stop="45883"/>
                    <exon start="46589" stop="46719"/>
                    <exon start="46870" stop="46918"/>
                    <exon start="47005" stop="47034"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPTAVKAICVKFRRFSAMAIDAVPPLIAAQLNYIVTHAPFSVKVENMCSGCKNTGLLDRFSLVIPFCLDFIKWDVMYNAVYPLAAPDVIFGSEDETFRPYHAVSDASDSKSLKNPLTDWNNRDPTSLFTLVLQLRELYKAYQKKRVEQVDDDRLKFEISTMLSREGIEMSLSSNIDKPEEVKFAVPLLDLDLNKMVAGSTWRHPQKIYLQVIYPVGRKYSSAPSAPRLKLVSSPELKAVFSIDDFRLPPWLDGMCMAEYLPTLEEMLESQIKDAVASIES</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="50567" PGL_stop="53247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50567" e_stop="51097"/>
            <exon e_start="52040" e_stop="52309"/>
            <exon e_start="52397" e_stop="53247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.853" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.478" acc_prob="0.861" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50567" e_stop="51097" e_length="531"/>
          </exon>
          <intron i_serial="1" don_prob="0.853" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52040" e_stop="52309" e_length="270"/>
          </exon>
          <intron i_serial="2" don_prob="0.478" acc_prob="0.861">
            <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="52397" e_stop="53247" e_length="851"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50567" stop="51097"/>
              <exon start="52040" stop="52309"/>
              <exon start="52397" stop="53247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312314" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTACCACTAGAAATATCACTCTCTTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG : GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT : TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATATACTGTATTACAGTAGCTTCTTGTA</gDNA_template>
            <first_frame> S  L  P  L  E  I  S  L  S  F  P  F  L  P  S  S  S  S  S  S  S  S  L  L  L  L  I  L  S  F  L  S  S  I  F  F  I  K  K  T  K  R  K  *  E  K  F  F  T  F  K  E  D  N  V  E  T  K  S  V  P  N  S  G  K  L  S  V  M  N  T  V  L  I  L  P  D  V  T  K  E  P  P  L  S  P  I  F  S  L  N  V  S  M  F  I  S  M  K  L  L  V  D  V  M  F  L  G  R  F  *  W  I  *  S  L  V  R  W  I  V  S  D  L  V  P  M  D  R  S  S  V  L  I  T  L  S  L  D  S  L  V  L  V  I  T  G  P  K  V  I  I  L  K  A  L  S  *  L  M  L  F  *  M  L  F  V  K  K  R  R  I  V  I  A  C  K  :  D  S  R  F  A  T  H  L  V  E  G  L  D  L  A  W  E  H  Y  *  F  P  R  *  G  R  S  I  Q  T  G  *  C  S  H  S  L  F  S  L  L  Q  R  C  L  T  L  L  *  N  H  T  M  L  H  C  R  C  T  N  W  W  R  M  P  M  N  V  W  S  L  T  T  K  L  Y  M  I  F  V  S  E  L  *  S  S  L  L  Q  V  :  L  V  T  *  T  I  *  S  L  Q  P  *  V  V  L  L  A  V  *  D  S  L  V  S  *  T  Q  T  *  G  N  W  L  *  I  *  F  P  S  H  V  F  T  S  S  W  W  D  L  P  H  *  P  L  V  D  H  S  N  T  Y  R  *  Q  C  Q  S  L  L  N  K  C  G  M  P  R  T  *  C  A  R  Q  I  P  V  M  D  V  T  *  Q  L  L  P  C  L  G  V  R  *  A  Q  R  R  *  M  N  R  *  S  M  C  R  T  R  T  R  P  T  L  L  N  G  S  L  T  M  S  S  L  V  C  V  I  S  H  Q  L  G  *  R  W  H  P  R  L  L  E  I  Q  P  P  F  R  R  C  L  E  G  *  V  S  S  L  L  P  C  S  G  A  R  L  S  C  I  G  T  Q  V  K  E  W  M  K  W  S  S  L  K  P  R  A  T  *  M  I  W  L  Q  N  I  N  N  T  R  M  L  Q  Q  M  M  R  K  S  M  M  M  M  R  L  L  M  I  N  T  N  P  K  N  F  S  T  F  D  I  L  L  V  C  S  I  S  A  K  *  T  C  Y  V  S  Y  C  L  L  F  I  *  T  L  C  L  V  C  *  E  M  K  C  L  L  L  V  Y  M  N  I  L  Y  Y  S  S  F  L   </first_frame>
            <second_frame>  H  Y  H  *  K  Y  H  S  L  S  H  F  S  L  H  L  H  L  H  L  H  L  F  F  F  L  F  S  H  S  S  H  Q  F  F  S  S  K  K  L  R  E  N  E  R  N  S  S  H  S  R  R  T  M  W  K  P  N  R  F  Q  I  L  G  S  Y  L  *  *  T  R  C  *  S  Y  R  T  L  Q  R  N  R  R  *  V  R  S  S  A  *  T  Y  Q  C  L  F  Q  *  S  F  W  W  T  L  C  S  *  G  G  F  D  G  S  R  A  W  Y  D  G  *  Y  Q  I  W  S  L  W  T  D  L  P  S  *  *  L  C  L  W  T  V  W  C  W  *  *  L  G  Q  R  S  L  Y  *  R  R  *  V  D  *  C  C  S  R  C  C  S  *  R  S  G  E  L  *  L  L  A  R :   I  P  G  L  P  L  T  W  W  R  D  W  I  W  H  G  N  T  T  D  F  Q  G  K  G  G  V  S  R  Q  D  D  A  H  I  L  C  F  P  F  S  K  G  V  *  H  C  C  R  T  I  Q  C  Y  T  V  G  A  P  I  G  G  E  C  R  *  M  Y  G  P  *  Q  R  S  S  I  *  Y  L  F  Q  N  F  E  A  H  Y  S  K  F :   W  *  L  E  P  F  D  L  C  N  H  E  W  C  Y  L  L  F  E  I  P  W  S  A  E  L  R  P  E  E  I  G  C  E  F  N  S  L  P  T  S  S  L  L  H  G  G  I  C  P  T  N  L  S  W  I  T  A  I  H  I  A  N  S  A  R  A  Y  S  T  N  V  G  C  Q  E  H  D  V  R  G  R  S  P  S  W  T  L  P  D  S  F  C  H  V  *  G  *  D  E  H  K  G  G  R  *  T  D  D  Q  C  A  E  Q  E  L  V  L  L  C  *  M  D  P  *  Q  C  Q  V  *  C  V  *  Y  P  T  N  W  A  E  D  G  I  H  V  C  W  K  F  N  L  H  S  G  D  V  *  K  G  E  *  A  V  Y  C  H  V  Q  A  Q  G  F  L  A  L  V  H  R  *  R  N  G  *  N  G  V  H  *  S  R  E  Q  H  E  *  F  G  C  R  I  S  T  I  P  G  C  Y  S  R  *  *  G  R  V  *  *  *  *  G  C  *  *  S  I  P  I  L  K  T  S  L  H  L  I  Y  C  W  F  V  Q  F  L  P  S  E  L  V  M  F  P  I  V  F  S  S  F  E  L  C  V  W  F  V  E  K  *  N  V  F  Y  W  S  I  *  I  Y  C  I  T  V  A  S  C  </second_frame>
            <third_frame>   I  T  T  R  N  I  T  L  F  P  I  S  P  F  I  F  I  F  I  F  I  S  S  S  S  Y  S  L  I  P  L  I  N  F  F  H  Q  K  N  *  E  K  M  R  E  I  L  H  I  Q  G  G  Q  C  G  N  Q  I  G  S  K  F  W  E  V  I  C  D  E  H  G  V  D  P  T  G  R  Y  K  G  T  A  A  E  S  D  L  Q  L  E  R  I  N  V  Y  F  N  E  A  S  G  G  R  Y  V  P  R  A  V  L  M  D  L  E  P  G  T  M  D  S  I  R  S  G  P  Y  G  Q  I  F  R  P  D  N  F  V  F  G  Q  S  G  A  G  N  N  W  A  K  G  H  Y  T  E  G  A  E  L  I  D  A  V  L  D  V  V  R  K  E  A  E  N  C  D  C  L  Q   : G  F  Q  V  C  H  S  L  G  G  G  T  G  S  G  M  G  T  L  L  I  S  K  V  R  E  E  Y  P  D  R  M  M  L  T  F  S  V  F  P  S  P  K  V  S  D  T  V  V  E  P  Y  N  A  T  L  S  V  H  Q  L  V  E  N  A  D  E  C  M  V  L  D  N  E  A  L  Y  D  I  C  F  R  T  L  K  L  T  T  P  S   : F  G  D  L  N  H  L  I  S  A  T  M  S  G  V  T  C  C  L  R  F  P  G  Q  L  N  S  D  L  R  K  L  A  V  N  L  I  P  F  P  R  L  H  F  F  M  V  G  F  A  P  L  T  S  R  G  S  Q  Q  Y  I  S  L  T  V  P  E  L  T  Q  Q  M  W  D  A  K  N  M  M  C  A  A  D  P  R  H  G  R  Y  L  T  A  S  A  M  F  R  G  K  M  S  T  K  E  V  D  E  Q  M  I  N  V  Q  N  K  N  S  S  Y  F  V  E  W  I  P  N  N  V  K  S  S  V  C  D  I  P  P  T  G  L  K  M  A  S  T  F  V  G  N  S  T  S  I  Q  E  M  F  R  R  V  S  E  Q  F  T  A  M  F  R  R  K  A  F  L  H  W  Y  T  G  E  G  M  D  E  M  E  F  T  E  A  E  S  N  M  N  D  L  V  A  E  Y  Q  Q  Y  Q  D  A  T  A  D  D  E  E  E  Y  D  D  D  E  V  A  D  D  Q  Y  Q  S  *  K  L  L  Y  I  *  Y  I  V  G  L  F  N  F  C  Q  V  N  L  L  C  F  L  L  S  S  L  H  L  N  F  V  F  G  L  L  R  N  E  M  S  F  I  G  L  Y  E  Y  T  V  L  Q  *  L  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50689" stop="51097"/>
                    <exon start="52040" stop="52309"/>
                    <exon start="52397" stop="53079"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1359</number_coding_nucleotides>
                  <number_encoded_amino_acids>453</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKGTAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADDEEEYDDDEVADDQYQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="56668" PGL_stop="54885"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56668" e_stop="56293"/>
            <exon e_start="55938" e_stop="55876"/>
            <exon e_start="55765" e_stop="55691"/>
            <exon e_start="55328" e_stop="54885"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56668" e_stop="56293" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="56292" i_stop="55939" i_length="354"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55938" e_stop="55876" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55875" i_stop="55766" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55765" e_stop="55691" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="55690" i_stop="55329" i_length="362"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="55328" e_stop="54885" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56668" stop="56293"/>
              <exon start="55938" stop="55876"/>
              <exon start="55765" stop="55691"/>
              <exon start="55328" stop="54885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326673" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGAACCGCCGCAAAATTCAACAAGAATGAAAAACAGCAAGCAGAACGAACTGTGTGATTTGTTTCGTAATCCATCTAAAGATGAAATTGAAGTAGTAAAAATTCTACTCGATCTCGAAAATCTAGTGAGAGAAAGACAATATTGTTCGGTAATTTGGGGTTCCAAGAAGAGGAGATCTAATCGACGAATCGATTCTTCTTCTTCTCCCGTCGTCAACTCATCAAGTAGTTCGAAAATCGATGGAAACGAAATTGAACCCAAAATTAAAGCTGAAGTTACTAGCCCTGCTAGCCCTGCTACTCCTCTTTCATTTTCCCCAAGTGAATCTGATGAAAAATCCAAACATTCTTCTCGCAGAAGCTATAAACGAAAG : ACGAGGGAGGAGCTAATGGATAAAATAAAACAATTATCTCAATGCAGAGAATCGCTTACAGGG : GAAGTGGAGAATGTTCGTAATTACTACAATAATCAAAAAGCTTACAATATGAAGTTGAAAGCAATGAAAGAAGAG : GTAACAAGAATGGTGAATTTCCAAGGGGGTGGTGTTAATTTAGGTCAACTTTACTCTAATCCTGGAATAGAGCCCAATCGTCAACAGCCGTTCATTATGGATCAGGTTGCTTCAAGATCAGAAGCTATTCATAGATTTCAATACCCATTGGGCCAGCTGCAACAGGCCCAACATTTGTACTCAAATGGGTTGGGCCCAGGCCCAATGGGCCTTCCTGATCTGAATGTTAAGGTGGAAGAGGCTTTCGCATTGGACCAGTTCGATATCGATAGAATGAATGTTGAAAGGAAGGCCCAATATGCTGAAGCTAGAAGGAAGAGGAGGATTAAAAGAATAGAAATTAAGAACTCATCTGGTTTTATTAGACCACCAAGAAGGAGATAGTAGGTAATTTTTGTATTTTTGATCCTTCCATAGAATGATAGTATTATTTTTTTGTGAGCG</gDNA_template>
            <first_frame> F  R  T  A  A  K  F  N  K  N  E  K  Q  Q  A  E  R  T  V  *  F  V  S  *  S  I  *  R  *  N  *  S  S  K  N  S  T  R  S  R  K  S  S  E  R  K  T  I  L  F  G  N  L  G  F  Q  E  E  E  I  *  S  T  N  R  F  F  F  F  S  R  R  Q  L  I  K  *  F  E  N  R  W  K  R  N  *  T  Q  N  *  S  *  S  Y  *  P  C  *  P  C  Y  S  S  F  I  F  P  K  *  I  *  *  K  I  Q  T  F  F  S  Q  K  L  *  T  K   : D  E  G  G  A  N  G  *  N  K  T  I  I  S  M  Q  R  I  A  Y  R   : G  S  G  E  C  S  *  L  L  Q  *  S  K  S  L  Q  Y  E  V  E  S  N  E  R  R   : G  N  K  N  G  E  F  P  R  G  W  C  *  F  R  S  T  L  L  *  S  W  N  R  A  Q  S  S  T  A  V  H  Y  G  S  G  C  F  K  I  R  S  Y  S  *  I  S  I  P  I  G  P  A  A  T  G  P  T  F  V  L  K  W  V  G  P  R  P  N  G  P  S  *  S  E  C  *  G  G  R  G  F  R  I  G  P  V  R  Y  R  *  N  E  C  *  K  E  G  P  I  C  *  S  *  K  E  E  E  D  *  K  N  R  N  *  E  L  I  W  F  Y  *  T  T  K  K  E  I  V  G  N  F  C  I  F  D  P  S  I  E  *  *  Y  Y  F  F  V  S  </first_frame>
            <second_frame>  S  E  P  P  Q  N  S  T  R  M  K  N  S  K  Q  N  E  L  C  D  L  F  R  N  P  S  K  D  E  I  E  V  V  K  I  L  L  D  L  E  N  L  V  R  E  R  Q  Y  C  S  V  I  W  G  S  K  K  R  R  S  N  R  R  I  D  S  S  S  S  P  V  V  N  S  S  S  S  S  K  I  D  G  N  E  I  E  P  K  I  K  A  E  V  T  S  P  A  S  P  A  T  P  L  S  F  S  P  S  E  S  D  E  K  S  K  H  S  S  R  R  S  Y  K  R  K  :  T  R  E  E  L  M  D  K  I  K  Q  L  S  Q  C  R  E  S  L  T  G  :  E  V  E  N  V  R  N  Y  Y  N  N  Q  K  A  Y  N  M  K  L  K  A  M  K  E  E  :  V  T  R  M  V  N  F  Q  G  G  G  V  N  L  G  Q  L  Y  S  N  P  G  I  E  P  N  R  Q  Q  P  F  I  M  D  Q  V  A  S  R  S  E  A  I  H  R  F  Q  Y  P  L  G  Q  L  Q  Q  A  Q  H  L  Y  S  N  G  L  G  P  G  P  M  G  L  P  D  L  N  V  K  V  E  E  A  F  A  L  D  Q  F  D  I  D  R  M  N  V  E  R  K  A  Q  Y  A  E  A  R  R  K  R  R  I  K  R  I  E  I  K  N  S  S  G  F  I  R  P  P  R  R  R  *  *  V  I  F  V  F  L  I  L  P  *  N  D  S  I  I  F  L  *  A </second_frame>
            <third_frame>   Q  N  R  R  K  I  Q  Q  E  *  K  T  A  S  R  T  N  C  V  I  C  F  V  I  H  L  K  M  K  L  K  *  *  K  F  Y  S  I  S  K  I  *  *  E  K  D  N  I  V  R  *  F  G  V  P  R  R  G  D  L  I  D  E  S  I  L  L  L  L  P  S  S  T  H  Q  V  V  R  K  S  M  E  T  K  L  N  P  K  L  K  L  K  L  L  A  L  L  A  L  L  L  L  F  H  F  P  Q  V  N  L  M  K  N  P  N  I  L  L  A  E  A  I  N  E  R :   R  G  R  S  *  W  I  K  *  N  N  Y  L  N  A  E  N  R  L  Q  G :   K  W  R  M  F  V  I  T  T  I  I  K  K  L  T  I  *  S  *  K  Q  *  K  K  R :   *  Q  E  W  *  I  S  K  G  V  V  L  I  *  V  N  F  T  L  I  L  E  *  S  P  I  V  N  S  R  S  L  W  I  R  L  L  Q  D  Q  K  L  F  I  D  F  N  T  H  W  A  S  C  N  R  P  N  I  C  T  Q  M  G  W  A  Q  A  Q  W  A  F  L  I  *  M  L  R  W  K  R  L  S  H  W  T  S  S  I  S  I  E  *  M  L  K  G  R  P  N  M  L  K  L  E  G  R  G  G  L  K  E  *  K  L  R  T  H  L  V  L  L  D  H  Q  E  G  D  S  R  *  F  L  Y  F  *  S  F  H  R  M  I  V  L  F  F  C  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56667" stop="56293"/>
                    <exon start="55938" stop="55876"/>
                    <exon start="55765" stop="55691"/>
                    <exon start="55328" stop="54945"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>894</number_coding_nucleotides>
                  <number_encoded_amino_acids>298</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEPPQNSTRMKNSKQNELCDLFRNPSKDEIEVVKILLDLENLVRERQYCSVIWGSKKRRSNRRIDSSSSPVVNSSSSSKIDGNEIEPKIKAEVTSPASPATPLSFSPSESDEKSKHSSRRSYKRKTREELMDKIKQLSQCRESLTGEVENVRNYYNNQKAYNMKLKAMKEEVTRMVNFQGGGVNLGQLYSNPGIEPNRQQPFIMDQVASRSEAIHRFQYPLGQLQQAQHLYSNGLGPGPMGLPDLNVKVEEAFALDQFDIDRMNVERKAQYAEARRKRRIKRIEIKNSSGFIRPPRRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="64736" PGL_stop="61808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64736" e_stop="64425"/>
            <exon e_start="64345" e_stop="64223"/>
            <exon e_start="64142" e_stop="64072"/>
            <exon e_start="62320" e_stop="61808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.467" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64736" e_stop="64425" e_length="312"/>
          </exon>
          <intron i_serial="1" don_prob="0.467" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64424" i_stop="64346" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64345" e_stop="64223" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.967">
            <gDNA_intron_boundary i_start="64222" i_stop="64143" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64142" e_stop="64072" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.919" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64071" i_stop="62321" i_length="1751"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="62320" e_stop="61808" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64736" stop="64425"/>
              <exon start="64345" stop="64223"/>
              <exon start="64142" stop="64072"/>
              <exon start="62320" stop="61808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321881" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTCACACTTCACATTTTTACAGCTGATTTTTTCGAATTGAATCCTGAAAATGTCGTCTGAAGACTCAAAGCCAGTGAGGAAAGTGGAAAGTGACGACGGAGAAAGCATTGGGTCTCTTTTTAACAGCAAAAAGAAACCTAACAATAATGCCGCTTCAAAATCTCAGCCTCTCAAAAAAGCTAAGATTAAGAAAGAAGAAAAAGATGATGATTTCGAAGAACCCATTTCGAAAAAGAGTCCAAAAATTGTTAAGCCCAAGAAGGAAGAACCTTCACCCGTGTCAAAGAAAAGTTCGAGTAGAACTGATAAA : AAAGTTGTAAAGAAAGAGGAAGAGGATAAGAAGAAAGGAACCAAAAATGGAGACACCGTTGTGAAGAAGAAGGAAAAGAAAGTTTATGATTTGCCTGGACAGAAGAGAGACGCTCCTGAGGAA : AGAGACCCTTTAAGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTG : GATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTGTGAAAAAGACCACGGAGTCTGTTACTATTAAGAAGACAACATCCTCGTCAACCACGCCATCAACACAGAAAAAGAAAACACCAGATTCTGGAAAAACGGAATCAATGCAGCGGTCAAAGAAACGGAAGCTTAAGGATGATTCTTCTGAAGAAGACTCAGATGATGGTTTCATTGCAACTCTTAAAAGCACAAAGAGACAGAAAGCCTCTTGATGTTTCTAATGGCTTAGTGAAATTGTAGATGAGAAATTAAATACTCTGTTACATGCATTTCAATTTCTCCATTATGTAAAAGTTGACCTTTGTTCTCTCATTTTCTCCATTGTGTTTTTCCAGGCTCTAAACTTTGAATACAATTAAAAAAAAATGTATCTCAAACTTCATTCATTGCCCTTAAGAAA</gDNA_template>
            <first_frame> P  S  H  F  T  F  L  Q  L  I  F  S  N  *  I  L  K  M  S  S  E  D  S  K  P  V  R  K  V  E  S  D  D  G  E  S  I  G  S  L  F  N  S  K  K  K  P  N  N  N  A  A  S  K  S  Q  P  L  K  K  A  K  I  K  K  E  E  K  D  D  D  F  E  E  P  I  S  K  K  S  P  K  I  V  K  P  K  K  E  E  P  S  P  V  S  K  K  S  S  S  R  T  D  K  :  K  V  V  K  K  E  E  E  D  K  K  K  G  T  K  N  G  D  T  V  V  K  K  K  E  K  K  V  Y  D  L  P  G  Q  K  R  D  A  P  E  E  :  R  D  P  L  R  I  F  Y  E  S  L  Y  Q  Q  V  P  E  S  E  L  A  A  I  W :   M  M  E  S  G  L  L  P  K  D  L  A  K  K  V  F  E  K  K  Q  K  K  A  Q  Q  L  K  L  G  S  P  L  K  T  V  V  T  V  K  K  T  T  E  S  V  T  I  K  K  T  T  S  S  S  T  T  P  S  T  Q  K  K  K  T  P  D  S  G  K  T  E  S  M  Q  R  S  K  K  R  K  L  K  D  D  S  S  E  E  D  S  D  D  G  F  I  A  T  L  K  S  T  K  R  Q  K  A  S  *  C  F  *  W  L  S  E  I  V  D  E  K  L  N  T  L  L  H  A  F  Q  F  L  H  Y  V  K  V  D  L  C  S  L  I  F  S  I  V  F  F  Q  A  L  N  F  E  Y  N  *  K  K  M  Y  L  K  L  H  S  L  P  L  R   </first_frame>
            <second_frame>  L  H  T  S  H  F  Y  S  *  F  F  R  I  E  S  *  K  C  R  L  K  T  Q  S  Q  *  G  K  W  K  V  T  T  E  K  A  L  G  L  F  L  T  A  K  R  N  L  T  I  M  P  L  Q  N  L  S  L  S  K  K  L  R  L  R  K  K  K  K  M  M  I  S  K  N  P  F  R  K  R  V  Q  K  L  L  S  P  R  R  K  N  L  H  P  C  Q  R  K  V  R  V  E  L  I  K :   K  L  *  R  K  R  K  R  I  R  R  K  E  P  K  M  E  T  P  L  *  R  R  R  K  R  K  F  M  I  C  L  D  R  R  E  T  L  L  R  K :   E  T  L  *  G  F  S  M  N  P  C  I  S  K  C  Q  K  V  N  *  Q  L  F   : G  *  W  S  Q  V  C  F  Q  R  T  W  R  R  K  F  L  R  R  N  K  R  R  P  S  S  *  S  L  V  H  L  *  K  R  L  *  L  *  K  R  P  R  S  L  L  L  L  R  R  Q  H  P  R  Q  P  R  H  Q  H  R  K  R  K  H  Q  I  L  E  K  R  N  Q  C  S  G  Q  R  N  G  S  L  R  M  I  L  L  K  K  T  Q  M  M  V  S  L  Q  L  L  K  A  Q  R  D  R  K  P  L  D  V  S  N  G  L  V  K  L  *  M  R  N  *  I  L  C  Y  M  H  F  N  F  S  I  M  *  K  L  T  F  V  L  S  F  S  P  L  C  F  S  R  L  *  T  L  N  T  I  K  K  K  C  I  S  N  F  I  H  C  P  *  E  </second_frame>
            <third_frame>   F  T  L  H  I  F  T  A  D  F  F  E  L  N  P  E  N  V  V  *  R  L  K  A  S  E  E  S  G  K  *  R  R  R  K  H  W  V  S  F  *  Q  Q  K  E  T  *  Q  *  C  R  F  K  I  S  A  S  Q  K  S  *  D  *  E  R  R  K  R  *  *  F  R  R  T  H  F  E  K  E  S  K  N  C  *  A  Q  E  G  R  T  F  T  R  V  K  E  K  F  E  *  N  *  *   : K  S  C  K  E  R  G  R  G  *  E  E  R  N  Q  K  W  R  H  R  C  E  E  E  G  K  E  S  L  *  F  A  W  T  E  E  R  R  S  *  G   : K  R  P  F  K  D  F  L  *  I  L  V  S  A  S  A  R  K  *  T  S  S  Y  L  :  D  D  G  V  R  F  A  S  K  G  L  G  E  E  S  F  *  E  E  T  K  E  G  P  A  A  K  A  W  F  T  S  E  N  G  C  D  C  E  K  D  H  G  V  C  Y  Y  *  E  D  N  I  L  V  N  H  A  I  N  T  E  K  E  N  T  R  F  W  K  N  G  I  N  A  A  V  K  E  T  E  A  *  G  *  F  F  *  R  R  L  R  *  W  F  H  C  N  S  *  K  H  K  E  T  E  S  L  L  M  F  L  M  A  *  *  N  C  R  *  E  I  K  Y  S  V  T  C  I  S  I  S  P  L  C  K  S  *  P  L  F  S  H  F  L  H  C  V  F  P  G  S  K  L  *  I  Q  L  K  K  N  V  S  Q  T  S  F  I  A  L  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64694" stop="64425"/>
                    <exon start="64345" stop="64223"/>
                    <exon start="64142" stop="64072"/>
                    <exon start="62320" stop="61996"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILKMSSEDSKPVRKVESDDGESIGSLFNSKKKPNNNAASKSQPLKKAKIKKEEKDDDFEEPISKKSPKIVKPKKEEPSPVSKKSSSRTDKKVVKKEEEDKKKGTKNGDTVVKKKEKKVYDLPGQKRDAPEERDPLRIFYESLYQQVPESELAAIWMMESGLLPKDLAKKVFEKKQKKAQQLKLGSPLKTVVTVKKTTESVTIKKTTSSSTTPSTQKKKTPDSGKTESMQRSKKRKLKDDSSEEDSDDGFIATLKSTKRQKAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="73141" PGL_stop="70773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73141" e_stop="72889"/>
            <exon e_start="72783" e_stop="72672"/>
            <exon e_start="71170" e_stop="71097"/>
            <exon e_start="70965" e_stop="70773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="0.988"/>
          <exon-intron don_prob="0.890" acc_prob="0.899" e_score="0.991"/>
          <exon-intron don_prob="0.988" acc_prob="0.989" e_score="0.959"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="73141" e_stop="72889" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72888" i_stop="72784" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="72783" e_stop="72672" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.890" acc_prob="0.899">
            <gDNA_intron_boundary i_start="72671" i_stop="71171" i_length="1501"/>
          </intron>
          <exon e_serial="3" e_score="0.959">
            <gDNA_exon_boundary e_start="71170" e_stop="71097" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.989">
            <gDNA_intron_boundary i_start="71096" i_stop="70966" i_length="131"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="70965" e_stop="70773" e_length="193"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73141" stop="72889"/>
              <exon start="72783" stop="72672"/>
              <exon start="71170" stop="71097"/>
              <exon start="70965" stop="70773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341225" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCATTGCGCTCTCTCTCTTTCAAACTCTAAAAGTTTCTTCAATCTGCAATGGCGAAGTCCAAAAAACCAAAAAATTCTTCCGATAGAGAAAAATGGAACAAAGTGTTCAATGCTTTAGTTCACATGTTGACATCACAGCAGACGCAGCTTGAATCCCTTGCAAAAGAGAGAATGATTCTTGAAGATCGGATAAAATTACAGAATGATCGATGGGTATCTGATATTCATAGATTTCAAGAACAAATTTATGAG : ATGAGGAAAAACTTTACAATTCAAGAGATGGAGCGCATGCTTGAGGTTGCGAAATCGGAGTTTGTTGTTGGTTTGAAGCAACGAGATGTTGCCGTGTTCCAAAGAAAGCTCG : AAAATGCAGATGGTGAACTGGCTGACTTCAGAGAATGGTTTGACTACCTCTCTCAGAGATGCTCTGAGCCAAAT : GATGTACCAAATGCTGCAACAAATGAAAAGTCGGAGACAAGAAAGAAGGCTTGGGAAGATGAGGTGAGGAGGCTTAAAACAGAAAATGAGAAGCTTACTTCAGAGAAAAATTCTGAGATTTCTGCCCTCTTGGCAGAAAAGAATTTTATTTGGAACCAGTTCAACAAACTGGAGCACGACATGACTGAGCAAT</gDNA_template>
            <first_frame> S  I  A  L  S  L  F  Q  T  L  K  V  S  S  I  C  N  G  E  V  Q  K  T  K  K  F  F  R  *  R  K  M  E  Q  S  V  Q  C  F  S  S  H  V  D  I  T  A  D  A  A  *  I  P  C  K  R  E  N  D  S  *  R  S  D  K  I  T  E  *  S  M  G  I  *  Y  S  *  I  S  R  T  N  L  *   : D  E  E  K  L  Y  N  S  R  D  G  A  H  A  *  G  C  E  I  G  V  C  C  W  F  E  A  T  R  C  C  R  V  P  K  K  A  R :   K  C  R  W  *  T  G  *  L  Q  R  M  V  *  L  P  L  S  E  M  L  *  A  K   : *  C  T  K  C  C  N  K  *  K  V  G  D  K  K  E  G  L  G  R  *  G  E  E  A  *  N  R  K  *  E  A  Y  F  R  E  K  F  *  D  F  C  P  L  G  R  K  E  F  Y  L  E  P  V  Q  Q  T  G  A  R  H  D  *  A   </first_frame>
            <second_frame>  P  L  R  S  L  S  F  K  L  *  K  F  L  Q  S  A  M  A  K  S  K  K  P  K  N  S  S  D  R  E  K  W  N  K  V  F  N  A  L  V  H  M  L  T  S  Q  Q  T  Q  L  E  S  L  A  K  E  R  M  I  L  E  D  R  I  K  L  Q  N  D  R  W  V  S  D  I  H  R  F  Q  E  Q  I  Y  E  :  M  R  K  N  F  T  I  Q  E  M  E  R  M  L  E  V  A  K  S  E  F  V  V  G  L  K  Q  R  D  V  A  V  F  Q  R  K  L   : E  N  A  D  G  E  L  A  D  F  R  E  W  F  D  Y  L  S  Q  R  C  S  E  P  N  :  D  V  P  N  A  A  T  N  E  K  S  E  T  R  K  K  A  W  E  D  E  V  R  R  L  K  T  E  N  E  K  L  T  S  E  K  N  S  E  I  S  A  L  L  A  E  K  N  F  I  W  N  Q  F  N  K  L  E  H  D  M  T  E  Q  </second_frame>
            <third_frame>   H  C  A  L  S  L  S  N  S  K  S  F  F  N  L  Q  W  R  S  P  K  N  Q  K  I  L  P  I  E  K  N  G  T  K  C  S  M  L  *  F  T  C  *  H  H  S  R  R  S  L  N  P  L  Q  K  R  E  *  F  L  K  I  G  *  N  Y  R  M  I  D  G  Y  L  I  F  I  D  F  K  N  K  F  M  R :   *  G  K  T  L  Q  F  K  R  W  S  A  C  L  R  L  R  N  R  S  L  L  L  V  *  S  N  E  M  L  P  C  S  K  E  S  S  :  K  M  Q  M  V  N  W  L  T  S  E  N  G  L  T  T  S  L  R  D  A  L  S  Q  M :   M  Y  Q  M  L  Q  Q  M  K  S  R  R  Q  E  R  R  L  G  K  M  R  *  G  G  L  K  Q  K  M  R  S  L  L  Q  R  K  I  L  R  F  L  P  S  W  Q  K  R  I  L  F  G  T  S  S  T  N  W  S  T  T  *  L  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73110" stop="72889"/>
                    <exon start="72783" stop="72672"/>
                    <exon start="71170" stop="71097"/>
                    <exon start="70965" stop="70774"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLQSAMAKSKKPKNSSDREKWNKVFNALVHMLTSQQTQLESLAKERMILEDRIKLQNDRWVSDIHRFQEQIYEMRKNFTIQEMERMLEVAKSEFVVGLKQRDVAVFQRKLENADGELADFREWFDYLSQRCSEPNDVPNAATNEKSETRKKAWEDEVRRLKTENEKLTSEKNSEISALLAEKNFIWNQFNKLEHDMTEQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="75987" PGL_stop="81848"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75987" e_stop="76074"/>
            <exon e_start="76727" e_stop="77202"/>
            <exon e_start="77925" e_stop="78356"/>
            <exon e_start="79191" e_stop="79749"/>
            <exon e_start="80135" e_stop="80603"/>
            <exon e_start="81803" e_stop="81848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.522" e_score="0.943"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.661" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.891"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="75987" e_stop="76074" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.522">
            <gDNA_intron_boundary i_start="76075" i_stop="76726" i_length="652"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76727" e_stop="77202" e_length="476"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="77203" i_stop="77924" i_length="722"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77925" e_stop="78356" e_length="432"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="0.661">
            <gDNA_intron_boundary i_start="78357" i_stop="79190" i_length="834"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79191" e_stop="79749" e_length="559"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80135" e_stop="80603" e_length="469"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80604" i_stop="81802" i_length="1199"/>
          </intron>
          <exon e_serial="6" e_score="0.891">
            <gDNA_exon_boundary e_start="81803" e_stop="81848" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75987" stop="76074"/>
              <exon start="76727" stop="77202"/>
              <exon start="77925" stop="78356"/>
              <exon start="79191" stop="79749"/>
              <exon start="80135" stop="80603"/>
              <exon start="81803" stop="81848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATAGTTCATGGTTGGTGTCTTCCTCGGAAACCTTAGATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGCCGCCGATACTTTGAG : ATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAG : GTTTTTGTCAGAGATTTTGTCCCCAGCGCTTTGGCATTCTTGATGAATGGTGAACCTGATATAGTAAAGAATTTTCTTTTGAAAACCTTGCGCCTCCAATCTCGGGAGAAGAAGATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGACACTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATG : GGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAG : TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTTTCTCTCTTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTTTATGAATTGGCTACGAGATTGTACACTTCACTCCTATTTTTTTCCAGTTAATCTGGTTTTCGTCTAAG : AGTGTTCGTCGAATGCCAATAGATGTGTGTTGTTAGCTGATCTACT</gDNA_template>
            <first_frame> *  *  F  M  V  G  V  F  L  G  N  L  R  S  H  *  S  S  P  *  P  P  P  P  P  P  I  L  *   : D  L  W  I  R  F  L  I  V  *  D  F  W  K  Y  W  K  M  P  S  P  V  D  V  S  Q  N  G  N  A  R  H  A  E  A  A  P  S  L  F  E  I  E  E  D  L  A  R  L  L  E  R  P  R  Q  V  N  I  E  R  K  R  S  F  D  E  R  S  F  S  E  M  S  M  T  H  S  P  P  R  Q  V  Y  K  N  S  E  N  S  S  R  V  F  D  N  M  V  G  V  Y  S  P  G  R  W  S  G  I  H  T  P  R  S  T  F  G  Y  E  P  H  P  I  I  G  E  A  W  E  A  L  R  R  S  I  V  N  F  R  D  Q  P  V  G  T  I  A  A  I  D  N  S  A  E  E  L  N  Y  D  Q  :  V  F  V  R  D  F  V  P  S  A  L  A  F  L  M  N  G  E  P  D  I  V  K  N  F  L  L  K  T  L  R  L  Q  S  R  E  K  K  I  D  Q  F  K  L  G  D  G  V  M  P  A  S  F  K  V  S  H  D  P  V  R  N  Y  E  T  I  T  A  D  F  G  E  S  A  I  G  R  V  A  P  V  D  S  G  F  W  W  I  I  L  L  R  A  Y  T  K  S  T  G  D  T  S  L  A  E  M  P  E  C  Q  R  G  I  R  L  I  L  E  L  C  L  S  E  G  F  D  T  F  P  T  L  L  C  A  D  G  C  S  M  I  D  R  R  M  :  G  V  Y  G  Y  P  I  E  I  Q  A  L  F  F  M  A  L  R  C  A  L  F  L  L  K  H  D  E  E  N  Q  E  C  C  D  A  I  I  K  R  L  H  A  L  S  F  H  M  R  S  Y  Y  W  L  D  I  K  Q  L  N  D  I  Y  R  Y  K  T  E  E  Y  S  H  T  A  V  N  K  F  N  V  M  P  D  S  L  P  E  W  V  F  D  F  M  P  T  R  G  G  Y  F  I  G  N  V  S  P  A  H  M  D  F  R  W  F  C  L  G  N  C  I  S  I  L  S  S  L  A  T  P  E  Q  A  S  A  I  M  D  L  V  E  S  R  W  Q  E  L  V  G  E  M  P  L  K  I  C  Y  P  A  M  E  G  H  E  W  R  I  V  T  G  C  D  P  K  N  T  S  W  S  Y  H  N  G  G  T  W  P   : V  L  L  W  L  L  T  A  A  A  I  K  T  G  R  P  Q  I  A  R  R  A  I  E  L  A  E  S  R  L  L  K  D  S  W  P  E  Y  Y  D  G  K  L  G  R  F  I  G  K  Q  A  R  K  F  Q  T  W  S  I  A  G  Y  L  V  A  R  M  M  L  E  D  P  S  H  L  G  M  I  S  L  E  E  D  K  Q  M  K  P  T  M  K  R  S  A  S  W  T  C  *  Y  P  C  T  Q  I  F  F  R  M  P  C  F  F  F  L  S  F  C  N  S  *  T  L  S  F  S  L  S  Q  K  C  *  I  F  Y  E  L  A  T  R  L  Y  T  S  L  L  F  F  S  S  *  S  G  F  R  L  R :   V  F  V  E  C  Q  *  M  C  V  V  S  *  S  T </first_frame>
            <second_frame>  D  S  S  W  L  V  S  S  S  E  T  L  D  L  T  E  V  R  R  S  R  R  R  R  R  R  Y  F  E  :  I  F  G  F  D  F  L  L  S  R  T  F  G  S  I  G  R  C  L  A  L  W  M  C  L  K  M  G  M  Q  D  T  R  K  L  L  H  P  C  L  K  S  R  K  I  W  L  D  C  W  K  G  Q  D  K  L  I  L  K  G  R  G  R  S  M  K  D  L  S  A  K  C  Q  *  L  I  H  R  H  V  R  Y  T  K  I  R  R  T  L  L  V  F  L  I  I  W  L  E  C  I  H  Q  E  G  G  P  A  Y  T  H  P  D  Q  P  S  D  M  S  R  I  L  *  S  A  K  H  G  K  L  *  G  V  L  L  L  T  S  E  I  N  L  W  E  L  L  L  L  *  I  I  L  L  R  N  L  T  M  I  R :   F  L  S  E  I  L  S  P  A  L  W  H  S  *  *  M  V  N  L  I  *  *  R  I  F  F  *  K  P  C  A  S  N  L  G  R  R  R  *  T  S  S  S  W  G  M  E  L  C  L  Q  V  L  K  C  L  M  I  L  L  G  T  M  R  L  *  L  L  I  S  V  K  V  L  L  V  E  L  L  L  L  I  Q  G  S  G  G  L  Y  Y  F  V  H  T  Q  S  L  Q  G  T  L  L  W  L  R  C  Q  N  A  K  G  V  *  G  *  F  L  N  Y  V  S  L  K  V  L  I  H  S  Q  P  C  C  A  L  M  D  A  L  *  L  I  A  E  W :   V  S  M  A  I  L  L  K  Y  K  H  F  S  L  W  P  *  D  V  P  C  F  S  L  N  T  T  K  K  T  K  S  V  V  M  Q  *  L  N  D  F  M  L  *  A  F  T  *  E  V  T  I  G  S  T  *  N  N  *  M  I  Y  T  A  T  K  Q  K  S  T  L  T  L  Q  *  T  S  L  M  *  C  Q  I  P  F  R  S  G  F  L  I  S  C  Q  L  V  V  V  T  S  S  E  M  L  V  L  L  T  W  T  S  V  G  F  V  W  V  T  V  F  Q  S  C  H  L  W  L  H  L  S  K  L  P  P  *  W  I  S  L  N  Q  D  G  K  S  *  L  E  K  C  R  *  K  S  V  I  L  L  W  K  A  M  N  G  E  L  *  Q  D  A  T  L  K  T  L  V  G  V  T  T  M  V  A  L  G  Q  :  F  F  C  G  S  L  L  Q  Q  L  S  R  L  V  D  P  K  *  H  D  G  P  L  N  *  L  N  R  V  Y  *  K  I  A  G  Q  S  I  T  T  E  S  L  V  D  L  L  E  S  R  R  V  S  S  R  H  G  P  L  L  V  T  W  *  L  E  *  C  W  K  I  H  L  I  W  V  *  Y  H  L  K  K  I  N  R  *  S  L  P  *  K  D  L  L  L  G  L  V  N  I  L  V  H  K  F  S  F  E  C  H  A  F  F  F  S  L  F  A  I  R  K  H  S  L  L  V  C  R  K  N  V  E  F  F  M  N  W  L  R  D  C  T  L  H  S  Y  F  F  P  V  N  L  V  F  V  *   : E  C  S  S  N  A  N  R  C  V  L  L  A  D  L   </second_frame>
            <third_frame>   I  V  H  G  W  C  L  P  R  K  P  *  I  S  L  K  F  A  V  A  A  A  A  A  A  D  T  L  R :   S  L  D  S  I  S  Y  C  L  G  L  L  E  V  L  E  D  A  *  P  C  G  C  V  S  K  W  E  C  K  T  R  G  S  C  S  I  L  V  *  N  R  G  R  F  G  *  I  A  G  K  A  K  T  S  *  Y  *  K  E  E  V  V  R  *  K  I  F  Q  R  N  V  N  D  S  F  T  A  T  S  G  I  Q  K  F  G  E  L  F  S  C  F  *  *  Y  G  W  S  V  F  T  R  K  V  V  R  H  T  H  T  Q  I  N  L  R  I  *  A  A  S  Y  N  R  R  S  M  G  S  F  E  A  F  Y  C  *  L  P  R  S  T  C  G  N  Y  C  C  Y  R  *  F  C  *  G  T  *  L  *  S   : G  F  C  Q  R  F  C  P  Q  R  F  G  I  L  D  E  W  *  T  *  Y  S  K  E  F  S  F  E  N  L  A  P  P  I  S  G  E  E  D  R  P  V  Q  V  G  G  W  S  Y  A  C  K  F  *  S  V  S  *  S  C  *  E  L  *  D  Y  N  C  *  F  R  *  K  C  Y  W  *  S  C  S  C  *  F  R  V  L  V  D  Y  T  T  S  C  I  H  K  V  Y  R  G  H  F  F  G  *  D  A  R  M  P  K  G  Y  K  A  D  S  *  I  M  S  L  *  R  F  *  Y  I  P  N  P  A  V  R  *  W  M  L  Y  D  *  S  Q  N   : G  C  L  W  L  S  Y  *  N  T  S  T  F  L  Y  G  L  K  M  C  L  V  S  P  *  T  R  R  R  K  P  R  V  L  *  C  N  N  *  T  T  S  C  F  K  L  S  H  E  K  L  L  L  A  R  H  K  T  T  E  *  Y  I  P  L  Q  N  R  R  V  L  S  H  C  S  K  Q  V  *  C  D  A  R  F  P  S  G  V  G  F  *  F  H  A  N  S  W  W  L  L  H  R  K  C  *  S  C  S  H  G  L  P  L  V  L  F  G  *  L  Y  F  N  L  V  I  F  G  Y  T  *  A  S  F  R  H  N  G  S  R  *  I  K  M  A  R  A  S  W  R  N  A  A  E  N  L  L  S  C  Y  G  R  P  *  M  E  N  C  N  R  M  R  P  *  K  H  *  L  E  L  P  Q  W  W  H  L  A  S :   S  S  V  A  P  Y  C  S  S  Y  Q  D  W  S  T  P  N  S  T  T  G  H  *  T  S  *  I  A  F  T  K  R  *  L  A  R  V  L  R  R  K  A  W  S  I  Y  W  K  A  G  A  *  V  P  D  M  V  H  C  W  L  L  G  S  *  N  D  A  G  R  S  I  S  F  G  Y  D  I  T  *  R  R  *  T  D  E  A  Y  H  E  K  I  C  F  L  D  L  L  I  S  L  Y  T  N  F  L  S  N  A  M  L  F  F  S  L  F  L  Q  F  V  N  T  L  F  *  F  V  A  K  M  L  N  F  L  *  I  G  Y  E  I  V  H  F  T  P  I  F  F  Q  L  I  W  F  S  S  K  :  S  V  R  R  M  P  I  D  V  C  C  *  L  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76756" stop="77202"/>
                    <exon start="77925" stop="78356"/>
                    <exon start="79191" stop="79749"/>
                    <exon start="80135" stop="80430"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1731</number_coding_nucleotides>
                  <number_encoded_amino_acids>577</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFWKYWKMPSPVDVSQNGNARHAEAAPSLFEIEEDLARLLERPRQVNIERKRSFDERSFSEMSMTHSPPRQVYKNSENSSRVFDNMVGVYSPGRWSGIHTPRSTFGYEPHPIIGEAWEALRRSIVNFRDQPVGTIAAIDNSAEELNYDQVFVRDFVPSALAFLMNGEPDIVKNFLLKTLRLQSREKKIDQFKLGDGVMPASFKVSHDPVRNYETITADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDTSLAEMPECQRGIRLILELCLSEGFDTFPTLLCADGCSMIDRRMGVYGYPIEIQALFFMALRCALFLLKHDEENQECCDAIIKRLHALSFHMRSYYWLDIKQLNDIYRYKTEEYSHTAVNKFNVMPDSLPEWVFDFMPTRGGYFIGNVSPAHMDFRWFCLGNCISILSSLATPEQASAIMDLVESRWQELVGEMPLKICYPAMEGHEWRIVTGCDPKNTSWSYHNGGTWPVLLWLLTAAAIKTGRPQIARRAIELAESRLLKDSWPEYYDGKLGRFIGKQARKFQTWSIAGYLVARMMLEDPSHLGMISLEEDKQMKPTMKRSASWTC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80405" stop="80602"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDLLLGLVNILVHKFSFECHAFFFSLFAIRKHSLLVCRKNVEFFMNWLRDCTLHSYFFPVNLVFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="86681" PGL_stop="82285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86681" e_stop="86623"/>
            <exon e_start="84847" e_stop="84467"/>
            <exon e_start="83865" e_stop="83796"/>
            <exon e_start="83272" e_stop="83106"/>
            <exon e_start="82998" e_stop="82925"/>
            <exon e_start="82561" e_stop="82285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.954" e_score="0.966"/>
          <exon-intron don_prob="0.939" acc_prob="0.991" e_score="0.984"/>
          <exon-intron don_prob="0.462" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.585" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="86681" e_stop="86623" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.954">
            <gDNA_intron_boundary i_start="86622" i_stop="84848" i_length="1775"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="84847" e_stop="84467" e_length="381"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.991">
            <gDNA_intron_boundary i_start="84466" i_stop="83866" i_length="601"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83865" e_stop="83796" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.462" acc_prob="0.956">
            <gDNA_intron_boundary i_start="83795" i_stop="83273" i_length="523"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83272" e_stop="83106" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.585" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83105" i_stop="82999" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82998" e_stop="82925" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82924" i_stop="82562" i_length="363"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="82561" e_stop="82285" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86681" stop="86623"/>
              <exon start="84847" stop="84467"/>
              <exon start="83865" stop="83796"/>
              <exon start="83272" stop="83106"/>
              <exon start="82998" stop="82925"/>
              <exon start="82561" stop="82285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325220" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTACTCTGTCGCCGGTTGCCGCCGGTTGTCGCTGCTCGCACGTCTTCTCTTTTTCAG : CTGATATAAGCCCAAAATTGTAGCTTATGTTTGGACTAAACTACAAATTGGTTAAGGTGCTCCCATCGACAATACACTATTGGAGAACGAGTGCAGAGGTCTGATATTTCTCGTTCAAGTGTCGACTCAACGCCGAGAGAAGTCGCCTTTTTTGGTTGAGAAAAACCTCGAAACTGCCCTTTGGCTCATCTTAATGTAACTATTATTGTGACAGAGAAGATAAGAACATTGTTTTTGTGAAATCAGATGTCGACAGCAACATACCCACCACCCCCTCCGTTTTATAGGCTGTACAAGGACTATCTTCAAGACCCCAAGTCTGCTCCGGAACCTCCCCCTCCAATTGAGGGCACCTATGTCCTCTTTGGTAGCAACTACACT : ACTGATGATGTACTCCCAAATTTGGAAGAGCAGGGTGTGCGTCAGTTATACCCAAAAGGGCCTAATGTTG : ATTTCAAGAAAGAACTAAGAGCACTTAACAGAGAATTGCAGCTACATATATTGGAGCTTGCTGATGTTCTTGTAGAGCGCCCTTCGCAATATGCCAGGAGAGTGGAAGAGATATCTCTGATATTCAAGAACTTGCACCACCTACTCAATTCTCTGCGTCCTCACCAG : GCTCGAGCCACACTTATCCACATTCTAGAACTTCAGATACAACGACGTAAACAAGCAATAGAGGATATCAAGCG : GAGAAGGGAAGAAGCTCAGAAGCTTCTAAAGGAGGCACTTGGTACCCTTGAGGGACAGTAGAATGCTCTTTAGACTTTACACACACAGCTGGCAGAATTAGTGTCTAGAATGCTTTGAAATTACAGTATAGAAATCATTCAGTCCTAATGTGAAATTTTCTTTATTCACTTGCCTGAATTTTATACAGTGACAATGCTTTTATGTGGCAAGTGTCACAATCCAGTGCCAAAAATTCGACGTTTCAGTCATCGAGGCAATACAGAGTTTCGATTAAGA</gDNA_template>
            <first_frame> V  Y  S  V  A  G  C  R  R  L  S  L  L  A  R  L  L  F  F  S :   *  Y  K  P  K  I  V  A  Y  V  W  T  K  L  Q  I  G  *  G  A  P  I  D  N  T  L  L  E  N  E  C  R  G  L  I  F  L  V  Q  V  S  T  Q  R  R  E  K  S  P  F  L  V  E  K  N  L  E  T  A  L  W  L  I  L  M  *  L  L  L  *  Q  R  R  *  E  H  C  F  C  E  I  R  C  R  Q  Q  H  T  H  H  P  L  R  F  I  G  C  T  R  T  I  F  K  T  P  S  L  L  R  N  L  P  L  Q  L  R  A  P  M  S  S  L  V  A  T  T  L :   L  M  M  Y  S  Q  I  W  K  S  R  V  C  V  S  Y  T  Q  K  G  L  M  L  :  I  S  R  K  N  *  E  H  L  T  E  N  C  S  Y  I  Y  W  S  L  L  M  F  L  *  S  A  L  R  N  M  P  G  E  W  K  R  Y  L  *  Y  S  R  T  C  T  T  Y  S  I  L  C  V  L  T  R :   L  E  P  H  L  S  T  F  *  N  F  R  Y  N  D  V  N  K  Q  *  R  I  S  S   : G  E  G  K  K  L  R  S  F  *  R  R  H  L  V  P  L  R  D  S  R  M  L  F  R  L  Y  T  H  S  W  Q  N  *  C  L  E  C  F  E  I  T  V  *  K  S  F  S  P  N  V  K  F  S  L  F  T  C  L  N  F  I  Q  *  Q  C  F  Y  V  A  S  V  T  I  Q  C  Q  K  F  D  V  S  V  I  E  A  I  Q  S  F  D  *   </first_frame>
            <second_frame>  S  T  L  S  P  V  A  A  G  C  R  C  S  H  V  F  S  F  S   : A  D  I  S  P  K  L  *  L  M  F  G  L  N  Y  K  L  V  K  V  L  P  S  T  I  H  Y  W  R  T  S  A  E  V  *  Y  F  S  F  K  C  R  L  N  A  E  R  S  R  L  F  W  L  R  K  T  S  K  L  P  F  G  S  S  *  C  N  Y  Y  C  D  R  E  D  K  N  I  V  F  V  K  S  D  V  D  S  N  I  P  T  T  P  S  V  L  *  A  V  Q  G  L  S  S  R  P  Q  V  C  S  G  T  S  P  S  N  *  G  H  L  C  P  L  W  *  Q  L  H   : Y  *  *  C  T  P  K  F  G  R  A  G  C  A  S  V  I  P  K  R  A  *  C  * :   F  Q  E  R  T  K  S  T  *  Q  R  I  A  A  T  Y  I  G  A  C  *  C  S  C  R  A  P  F  A  I  C  Q  E  S  G  R  D  I  S  D  I  Q  E  L  A  P  P  T  Q  F  S  A  S  S  P   : G  S  S  H  T  Y  P  H  S  R  T  S  D  T  T  T  *  T  S  N  R  G  Y  Q  A  :  E  K  G  R  S  S  E  A  S  K  G  G  T  W  Y  P  *  G  T  V  E  C  S  L  D  F  T  H  T  A  G  R  I  S  V  *  N  A  L  K  L  Q  Y  R  N  H  S  V  L  M  *  N  F  L  Y  S  L  A  *  I  L  Y  S  D  N  A  F  M  W  Q  V  S  Q  S  S  A  K  N  S  T  F  Q  S  S  R  Q  Y  R  V  S  I  K  </second_frame>
            <third_frame>   L  L  C  R  R  L  P  P  V  V  A  A  R  T  S  S  L  F  Q  :  L  I  *  A  Q  N  C  S  L  C  L  D  *  T  T  N  W  L  R  C  S  H  R  Q  Y  T  I  G  E  R  V  Q  R  S  D  I  S  R  S  S  V  D  S  T  P  R  E  V  A  F  F  G  *  E  K  P  R  N  C  P  L  A  H  L  N  V  T  I  I  V  T  E  K  I  R  T  L  F  L  *  N  Q  M  S  T  A  T  Y  P  P  P  P  P  F  Y  R  L  Y  K  D  Y  L  Q  D  P  K  S  A  P  E  P  P  P  P  I  E  G  T  Y  V  L  F  G  S  N  Y  T  :  T  D  D  V  L  P  N  L  E  E  Q  G  V  R  Q  L  Y  P  K  G  P  N  V   : D  F  K  K  E  L  R  A  L  N  R  E  L  Q  L  H  I  L  E  L  A  D  V  L  V  E  R  P  S  Q  Y  A  R  R  V  E  E  I  S  L  I  F  K  N  L  H  H  L  L  N  S  L  R  P  H  Q  :  A  R  A  T  L  I  H  I  L  E  L  Q  I  Q  R  R  K  Q  A  I  E  D  I  K  R :   R  R  E  E  A  Q  K  L  L  K  E  A  L  G  T  L  E  G  Q  *  N  A  L  *  T  L  H  T  Q  L  A  E  L  V  S  R  M  L  *  N  Y  S  I  E  I  I  Q  S  *  C  E  I  F  F  I  H  L  P  E  F  Y  T  V  T  M  L  L  C  G  K  C  H  N  P  V  P  K  I  R  R  F  S  H  R  G  N  T  E  F  R  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84607" stop="84467"/>
                    <exon start="83865" stop="83796"/>
                    <exon start="83272" stop="83106"/>
                    <exon start="82998" stop="82925"/>
                    <exon start="82561" stop="82501"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQMSTATYPPPPPFYRLYKDYLQDPKSAPEPPPPIEGTYVLFGSNYTTDDVLPNLEEQGVRQLYPKGPNVDFKKELRALNRELQLHILELADVLVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAIEDIKRRREEAQKLLKEALGTLEGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="87930" PGL_stop="91536"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87930" e_stop="88054"/>
            <exon e_start="89083" e_stop="89264"/>
            <exon e_start="89345" e_stop="89402"/>
            <exon e_start="89781" e_stop="89902"/>
            <exon e_start="90036" e_stop="90243"/>
            <exon e_start="90329" e_stop="90507"/>
            <exon e_start="90583" e_stop="90637"/>
            <exon e_start="90761" e_stop="90830"/>
            <exon e_start="90907" e_stop="90997"/>
            <exon e_start="91094" e_stop="91444"/>
            <exon e_start="91513" e_stop="91536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.830" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87930" e_stop="88054" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.830" acc_prob="0.994">
            <gDNA_intron_boundary i_start="88055" i_stop="89082" i_length="1028"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89083" e_stop="89264" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89265" i_stop="89344" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89345" e_stop="89402" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.699">
            <gDNA_intron_boundary i_start="89403" i_stop="89780" i_length="378"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89781" e_stop="89902" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.943" acc_prob="0.771">
            <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90036" e_stop="90243" e_length="208"/>
          </exon>
          <intron i_serial="5" don_prob="0.886" acc_prob="0.963">
            <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90329" e_stop="90507" e_length="179"/>
          </exon>
          <intron i_serial="6" don_prob="0.866" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90508" i_stop="90582" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90583" e_stop="90637" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90638" i_stop="90760" i_length="123"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="90761" e_stop="90830" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90831" i_stop="90906" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="90907" e_stop="90997" e_length="91"/>
          </exon>
          <intron i_serial="9" don_prob="0.950" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90998" i_stop="91093" i_length="96"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="91094" e_stop="91444" e_length="351"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="91445" i_stop="91512" i_length="68"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="91513" e_stop="91536" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87930" stop="88054"/>
              <exon start="89083" stop="89264"/>
              <exon start="89345" stop="89402"/>
              <exon start="89781" stop="89902"/>
              <exon start="90036" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90830"/>
              <exon start="90907" stop="90997"/>
              <exon start="91094" stop="91444"/>
              <exon start="91513" stop="91536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321445" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGG : ATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG : TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG : TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG : ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG : TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA : GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG : GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA : GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAG : GATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTAGCAAAGCAG : AATGCAGATTTCCTTTCATTGTCA</gDNA_template>
            <first_frame> K  Q  S  N  *  S  F  S  C  E  I  L  R  E  S  G  N  Q  K  P  K  A  S  V  F  P  F  V  K  Q  K  Y  S  Q  I  A  K  S  L  L  F  G :   L  *  G  R  K  *  N  N  C  E  E  I  E  E  R  G  R  K  I  E  W  C  W  *  S  L  V  Q  Y  E  Q  H  *  N  G  L  F  K  V  *  *  *  R  *  D  S  F  Q  C  F  C  S  E  A  I  *  V  S  Q  K   : V  F  *  *  V  *  W  S  R  S  C  F  C  S  S  E  S  S  F  S :   Y  Q  E  E  N  S  Q  A  H  L  S  T  F  A  D  F  Q  K  G  E  S  H  V  R  W  S  *  N  T  K  E  I  W  Q  Q  V  *  A  *  F   : D  S  L  W  F  K  S  V  Y  K  G  G  A  *  L  S  N  H  Q  R  *  R  G  S  G  *  N  L  V  C  F  G  W  Y  D  P  R  C  *  H  L  E  R  K  Q  N  K  *  S  T  S  *  S  E  I  F  G  L  T  R  T  *  G  F  C  N  R  K  W  S :   C  N  N  R  T  G  H  K  D  K  Q  L  P  I  Q  C  *  S  F  E  A  V  S  R  H  S  C  F  C  W  R  S  C  Q  I  K  I  I  S  *  C  F  P  V  *  Y  I  H  Q  H  R  A  A  R  N  F  I  A  T   : S  C  C  L  S  S  Q  Q  T  K  H  T  Q  G  E  *  E  *  W :   F  I  V  V  A  R  L  V  C  S  R  V  I  L  F  R  H  T  *  F  F  T  T  :  V  S  N  W  Q  I  S  C  L  D  R  E  R  W  H  *  S  S  S  S  K  C  K  I  L  S  T  N  H  E   : G  F  S  S  S  T  *  V  E  E  V  I  *  E  V  C  C  S  C  L  Y  K  S  A  D  *  G  L  T  D  F  D  E  R  *  H  S  L  L  A  S  F  S  V  L  T  S  *  W  S  E  A  R  A  S  Y  N  S  E  Q  P  N  C  K  G  E  *  Y  A  W  N  C  F  Y  W  E  C  C  L  Y  C  *  E  E  S  N  *  S  *  K  C  N  P  F  A  P  K  T  P  P  R  S  A  T  G  F  Y  Y  I  W  V  Q  F  F  S  K  A   : E  C  R  F  P  F  I  V  </first_frame>
            <second_frame>  N  R  V  T  D  R  F  R  V  K  S  *  E  N  R  V  I  K  N  R  K  L  R  F  F  R  L  L  S  R  N  I  L  R  *  L  N  R  Y  Y  L   : D  C  K  G  G  N  E  I  I  A  K  K  S  K  K  G  G  E  R  L  S  G  A  G  E  V  *  S  S  M  N  N  I  E  M  G  C  L  K  S  D  D  N  D  E  I  H  S  N  V  S  V  R  K  R  F  K  F  P  K  K  :  F  F  D  E  C  N  G  V  D  H  A  S  V  P  R  K  V  R  S   : V  I  K  K  R  I  R  K  L  I  S  P  P  L  P  I  S  K  K  A  N  R  M  S  D  G  A  E  T  L  R  K  Y  G  N  K  S  K  L  N  L  :  T  H  C  G  S  S  R  C  I  K  E  E  L  D  C  P  I  T  K  D  E  E  E  V  A  E  T  L  Y  A  L  A  G  M  I  P  D  V  D  T  L  S  E  S  K  I  N  S  Q  L  P  E  V  K  S  L  D  L  P  E  P  E  A  S  V  I  A  S  G   : V  V  T  T  E  Q  D  I  R  T  N  S  S  Q  F  S  A  E  A  L  K  Q  F  P  D  I  A  V  S  A  G  E  A  A  K  S  K  S  F  H  D  A  S  P  C  D  T  F  I  N  T  E  Q  L  E  I  S  S  Q  Q  :  V  V  A  Y  Q  A  N  K  Q  N  T  H  K  E  N  R  N  N   : G  S  L  L  W  P  G  L  S  A  A  G  S  S  C  S  D  I  L  D  S  S  P  Q :   F  P  I  G  K  F  P  V  W  I  G  S  A  G  T  D  H  Q  A  Q  N  A  K  S  C  L  P  T  M  K  :  D  S  Q  V  P  L  E  L  R  K  S  F  K  R  C  A  A  H  V  Y  I  S  R  L  T  K  G  L  Q  T  S  M  R  G  D  T  V  S  S  H  P  S  Q  S  S  P  P  D  G  V  K  Q  E  P  P  I  I  Q  N  S  P  T  V  K  V  N  D  M  H  G  I  V  S  T  G  N  V  A  S  T  V  E  K  N  P  T  E  V  R  N  A  I  L  L  H  Q  R  L  L  Q  D  Q  Q  Q  A  S  T  T  S  G  F  N  S  L  A  K  Q  :  N  A  D  F  L  S  L  S </second_frame>
            <third_frame>   T  E  *  L  I  V  F  V  *  N  L  E  R  I  G  *  S  K  T  E  S  F  G  F  S  V  C  *  A  E  I  F  S  D  S  *  I  V  T  I  W  :  I  V  R  E  E  M  K  *  L  R  R  N  R  R  K  G  E  K  D  *  V  V  L  V  K  F  S  P  V  *  T  T  L  K  W  V  V  *  S  L  M  I  T  M  R  F  I  P  M  F  L  F  G  S  D  L  S  F  P  K  S :   F  L  M  S  V  M  E  *  I  M  L  L  F  L  G  K  F  V  Q  :  L  S  R  R  E  F  A  S  S  S  L  H  L  C  R  F  P  K  R  R  I  A  C  Q  M  E  L  K  H  *  G  N  M  A  T  S  L  S  L  I  * :   L  I  V  V  Q  V  G  V  *  R  R  S  L  I  V  Q  S  P  K  M  K  R  K  W  L  K  P  C  M  L  W  L  V  *  S  Q  M  L  T  P  *  A  K  A  K  *  I  V  N  F  L  K  *  N  L  W  T  Y  Q  N  L  R  L  L  *  S  Q  V  E  :  L  *  Q  Q  N  R  T  *  G  Q  T  A  P  N  S  V  L  K  L  *  S  S  F  Q  T  *  L  F  L  L  E  K  L  P  N  Q  N  H  F  M  M  L  P  R  V  I  H  S  S  T  Q  S  S  *  K  F  H  R  N  K :   L  L  L  I  K  P  T  N  K  T  H  T  R  R  I  G  I  M  :  V  H  C  C  G  Q  A  C  L  Q  Q  G  H  L  V  P  T  Y  L  I  L  H  H   : S  F  Q  L  A  N  F  L  S  G  S  G  A  L  A  L  I  I  K  L  K  M  Q  N  L  V  Y  Q  P  *  R :   I  L  K  F  H  L  S  *  G  S  H  L  R  G  V  L  L  M  F  I  *  V  G  *  L  R  A  Y  R  L  R  *  E  V  T  Q  S  P  R  I  L  L  S  P  H  L  L  M  E  *  S  K  S  L  L  *  F  R  T  A  Q  L  *  R  *  M  I  C  M  E  L  F  L  L  G  M  L  P  L  L  L  R  R  I  Q  L  K  L  E  M  Q  S  F  C  T  K  D  S  S  K  I  S  N  R  L  L  L  H  L  G  S  I  L  *  Q  S  R :   M  Q  I  S  F  H  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89163" stop="89264"/>
                    <exon start="89345" stop="89402"/>
                    <exon start="89781" stop="89902"/>
                    <exon start="90036" stop="90243"/>
                    <exon start="90329" stop="90507"/>
                    <exon start="90583" stop="90637"/>
                    <exon start="90761" stop="90830"/>
                    <exon start="90907" stop="90997"/>
                    <exon start="91094" stop="91444"/>
                    <exon start="91513" stop="91536"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1260</number_coding_nucleotides>
                  <number_encoded_amino_acids>420</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSMNNIEMGCLKSDDNDEIHSNVSVRKRFKFPKKFFDECNGVDHASVPRKVRSVIKKRIRKLISPPLPISKKANRMSDGAETLRKYGNKSKLNLTHCGSSRCIKEELDCPITKDEEEVAETLYALAGMIPDVDTLSESKINSQLPEVKSLDLPEPEASVIASGVVTTEQDIRTNSSQFSAEALKQFPDIAVSAGEAAKSKSFHDASPCDTFINTEQLEISSQQVVAYQANKQNTHKENRNNGSLLWPGLSAAGSSCSDILDSSPQFPIGKFPVWIGSAGTDHQAQNAKSCLPTMKDSQVPLELRKSFKRCAAHVYISRLTKGLQTSMRGDTVSSHPSQSSPPDGVKQEPPIIQNSPTVKVNDMHGIVSTGNVASTVEKNPTEVRNAILLHQRLLQDQQQASTTSGFNSLAKQNADFLSLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="92377" PGL_stop="93060"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92377" e_stop="93060"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="92377" e_stop="93060" e_length="684"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92377" stop="93060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTACAAGTTTGGTGGAGTCTCTACCTCACAAATGCGAGACTGGCAAAATGCAGGGCGACCAATGCCTATCTTTGGACCTTCTCAAGCTCAATTGGCAGCTTCTTCTTCCTCGATGGAAGCACTTTCTTCCAAGTATGTTCCACCCTTGTTGAACGAGCAGGAGCTTATGTCCATTTCTACGTCACGAACTAATTCAAGGATCAAAGGACAATATTACAGTTTCCCTTCTGGCTTGGAAGGAAGTGGACATGGACTCTACCCCAATAATGTGCCTTCATTGCAGCTTCTTTGCAATGATCGTCGTTAATACGGAGAGCCATGGCACCATGTCCATAATATCAGAGCGAAACTCCTGCAAATCATAATTGATTTATTCTTTTCTTTGCTTATGCATGAGAGTTGGTGTTCATTCTGTTACTGAATATAAGGAACACAAAAAAGGGAGGATATAGTAAATCTCATGTCCCTTATTAGATGCTTATTCTGTTTCAGTTTCAATTAATTATAGAGTAACAACTTCAGAAATGGTTGTTGGTTTTTCCCTAGATGGAAAGAAACTTTATGTGTCTGAGAAGGTTATTGACTTGTAGTATACACAAGAAGAAGAATGGCAATGAAAAAAATTGCAGCTGCTTTAAATTTCTTTCAGCAATTTTCAGGAAAATAAAGTGTTCTTTTATAC</gDNA_template>
            <first_frame> Q  Y  K  F  G  G  V  S  T  S  Q  M  R  D  W  Q  N  A  G  R  P  M  P  I  F  G  P  S  Q  A  Q  L  A  A  S  S  S  S  M  E  A  L  S  S  K  Y  V  P  P  L  L  N  E  Q  E  L  M  S  I  S  T  S  R  T  N  S  R  I  K  G  Q  Y  Y  S  F  P  S  G  L  E  G  S  G  H  G  L  Y  P  N  N  V  P  S  L  Q  L  L  C  N  D  R  R  *  Y  G  E  P  W  H  H  V  H  N  I  R  A  K  L  L  Q  I  I  I  D  L  F  F  S  L  L  M  H  E  S  W  C  S  F  C  Y  *  I  *  G  T  Q  K  R  E  D  I  V  N  L  M  S  L  I  R  C  L  F  C  F  S  F  N  *  L  *  S  N  N  F  R  N  G  C  W  F  F  P  R  W  K  E  T  L  C  V  *  E  G  Y  *  L  V  V  Y  T  R  R  R  M  A  M  K  K  I  A  A  A  L  N  F  F  Q  Q  F  S  G  K  *  S  V  L  L  Y </first_frame>
            <second_frame>  S  T  S  L  V  E  S  L  P  H  K  C  E  T  G  K  M  Q  G  D  Q  C  L  S  L  D  L  L  K  L  N  W  Q  L  L  L  P  R  W  K  H  F  L  P  S  M  F  H  P  C  *  T  S  R  S  L  C  P  F  L  R  H  E  L  I  Q  G  S  K  D  N  I  T  V  S  L  L  A  W  K  E  V  D  M  D  S  T  P  I  M  C  L  H  C  S  F  F  A  M  I  V  V  N  T  E  S  H  G  T  M  S  I  I  S  E  R  N  S  C  K  S  *  L  I  Y  S  F  L  C  L  C  M  R  V  G  V  H  S  V  T  E  Y  K  E  H  K  K  G  R  I  *  *  I  S  C  P  L  L  D  A  Y  S  V  S  V  S  I  N  Y  R  V  T  T  S  E  M  V  V  G  F  S  L  D  G  K  K  L  Y  V  S  E  K  V  I  D  L  *  Y  T  Q  E  E  E  W  Q  *  K  K  L  Q  L  L  *  I  S  F  S  N  F  Q  E  N  K  V  F  F  Y   </second_frame>
            <third_frame>   V  Q  V  W  W  S  L  Y  L  T  N  A  R  L  A  K  C  R  A  T  N  A  Y  L  W  T  F  S  S  S  I  G  S  F  F  F  L  D  G  S  T  F  F  Q  V  C  S  T  L  V  E  R  A  G  A  Y  V  H  F  Y  V  T  N  *  F  K  D  Q  R  T  I  L  Q  F  P  F  W  L  G  R  K  W  T  W  T  L  P  Q  *  C  A  F  I  A  A  S  L  Q  *  S  S  L  I  R  R  A  M  A  P  C  P  *  Y  Q  S  E  T  P  A  N  H  N  *  F  I  L  F  F  A  Y  A  *  E  L  V  F  I  L  L  L  N  I  R  N  T  K  K  G  G  Y  S  K  S  H  V  P  Y  *  M  L  I  L  F  Q  F  Q  L  I  I  E  *  Q  L  Q  K  W  L  L  V  F  P  *  M  E  R  N  F  M  C  L  R  R  L  L  T  C  S  I  H  K  K  K  N  G  N  E  K  N  C  S  C  F  K  F  L  S  A  I  F  R  K  I  K  C  S  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92377" stop="92685"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYKFGGVSTSQMRDWQNAGRPMPIFGPSQAQLAASSSSMEALSSKYVPPLLNEQELMSISTSRTNSRIKGQYYSFPSGLEGSGHGLYPNNVPSLQLLCNDRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="96676" PGL_stop="93468"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96676" e_stop="96556"/>
            <exon e_start="96409" e_stop="96311"/>
            <exon e_start="96228" e_stop="96178"/>
            <exon e_start="94874" e_stop="94701"/>
            <exon e_start="94398" e_stop="94339"/>
            <exon e_start="93810" e_stop="93468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.658" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96676" e_stop="96556" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.799">
            <gDNA_intron_boundary i_start="96555" i_stop="96410" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96409" e_stop="96311" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.993">
            <gDNA_intron_boundary i_start="96310" i_stop="96229" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96228" e_stop="96178" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.658">
            <gDNA_intron_boundary i_start="96177" i_stop="94875" i_length="1303"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94874" e_stop="94701" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94700" i_stop="94399" i_length="302"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94398" e_stop="94339" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.713" acc_prob="0.993">
            <gDNA_intron_boundary i_start="94338" i_stop="93811" i_length="528"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="93810" e_stop="93468" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96676" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94701"/>
              <exon start="94398" stop="94339"/>
              <exon start="93810" stop="93468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG : ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG : GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG : TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG : GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG : GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAGAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATACGAA</gDNA_template>
            <first_frame> S  L  A  P  Q  L  *  P  *  G  L  F  A  G  F  Y  K  L  K  N  Q  R  D  F  F  N  C  F  Y  S  C  F  A  C  R  S  S  E  Q  N   : D  P  F  Y  I  A  S  E  Q  A  R  K  D  S  F  G  *  V  L  Y  T  S  *  G  I  R  E  A  Q  G  G  I  *   : G  S  *  V  G  C  E  *  R  S  Q  I  H  Q  L  C  *   : V  P  Y  S  Q  G  N  I  Q  K  I  C  R  I  I  F  L  T  L  C  *  Y  H  R  Q  R  V  G  L  F  R  V  H  P  L  V  C  G  D  F  G  S  L  L  Q  Q  C  L  *  A  G  F  G  F  Q  F  P  Q   : G  I  S  D  I  R  *  V  Y  S  C  W  G  A  P  G  N  K  *  E   : G  N  H  R  E  N  G  R  V  G  E  A  G  V  K  N  S  D  A  L  L  K  S  Q  N  K  H  L  P  F  P  S  S  P  A  L  L  F  R  L  A  V  F  T  A  L  D  I  L  Y  P  V  D  T  F  M  L  M  W  P  H  L  I  Q  D  L  F  I  H  T  F  K  G  S  L  Q  V  *  I  *  M  S  L  S  I  P  S  L  N  M  N  I  F  I  F  C  *  L  Q  K  L  Y  C  C  W  K  *  E  K  G  Y  F  N  T   </first_frame>
            <second_frame>  L  W  H  L  S  C  D  P  E  G  F  L  L  V  F  T  N  *  R  I  K  E  I  F  S  I  V  S  T  A  V  L  P  A  D  L  L  N  K  M  :  I  R  F  I  L  L  Q  N  R  Q  G  K  T  R  L  A  K  Y  Y  I  P  L  E  E  S  E  K  H  K  V  E  Y  E  :  V  H  R  L  V  V  N  R  D  P  K  F  T  N  F  V  E  :  F  R  T  H  K  V  I  Y  R  R  Y  A  G  L  F  F  S  L  C  V  D  I  T  D  N  E  L  A  Y  L  E  S  I  H  L  F  V  E  I  L  D  H  F  F  S  N  V  C  E  L  D  L  V  F  N  F  H  K  :  V  Y  L  I  L  D  E  F  I  L  A  G  E  L  Q  E  T  S  K  R  :  A  I  I  E  R  M  G  E  L  E  K  Q  E  *  R  T  P  M  L  C  S  R  V  K  T  N  T  C  L  F  L  H  H  L  H  F  S  S  G  W  L  Y  L  L  H  *  T  F  C  I  P  L  I  P  S  C  *  C  G  L  I  *  Y  K  I  C  S  F  I  H  L  K  V  V  C  K  F  K  Y  E  C  L  Y  L  F  P  V  *  I  *  I  S  L  S  F  V  N  S  R  N  Y  I  V  V  G  S  R  K  R  V  I  S  I  R  </second_frame>
            <third_frame>   S  G  T  S  V  V  T  L  R  A  F  C  W  F  L  Q  I  K  E  S  K  R  F  F  Q  L  F  L  Q  L  F  C  L  Q  I  F  *  T  K  * :   S  V  L  Y  C  F  R  T  G  K  E  R  L  V  W  L  S  I  I  Y  L  L  R  N  P  R  S  T  R  W  N  M  R :   F  I  G  W  L  *  I  E  I  P  N  S  P  T  L  L  S :   S  V  L  T  R  *  Y  T  E  D  M  Q  D  Y  F  S  H  F  V  L  I  S  Q  T  T  S  W  L  I  *  S  P  S  T  C  L  W  R  F  W  I  T  S  S  A  M  S  V  S  W  I  W  F  S  I  S  T  R :   Y  I  *  Y  *  M  S  L  F  L  L  G  S  S  R  K  Q  V  R  G :   Q  S  S  R  E  W  E  S  W  R  S  R  S  E  E  L  R  C  F  A  Q  E  S  K  Q  T  L  A  F  S  F  I  T  C  T  S  L  P  A  G  C  I  Y  C  I  R  H  S  V  S  R  *  Y  L  H  V  D  V  A  S  F  N  T  R  F  V  H  S  Y  I  *  R  *  F  A  S  L  N  M  N  V  S  I  Y  S  Q  F  K  Y  E  Y  L  Y  L  L  L  T  P  E  T  I  L  L  L  E  V  G  K  G  L  F  Q  Y  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96621" stop="96556"/>
                    <exon start="96409" stop="96311"/>
                    <exon start="96228" stop="96178"/>
                    <exon start="94874" stop="94701"/>
                    <exon start="94398" stop="94339"/>
                    <exon start="93810" stop="93769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIKEIFSIVSTAVLPADLLNKMIRFILLQNRQGKTRLAKYYIPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96056" e_stop="95150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="96056" e_stop="95150" e_length="907"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96056" stop="95150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATA</gDNA_template>
            <first_frame> K  M  *  L  S  V  L  F  S  I  Y  R  T  P  Y  *  A  N  L  L  Q  L  C  *  G  K  G  F  S  F  A  S  L  *  F  S  K  S  S  N  V  *  L  S  Y  T  V  R  G  *  C  P  L  G  G  E  L  F  C  F  P  S  T  L  R  L  H  I  I  M  T  F  H  I  I  G  E  V  I  S  R  W  F  I  V  F  I  Y  H  C  I  I  N  T  C  S  V  G  I  K  G  I  T  L  *  N  D  *  R  I  G  S  G  G  G  F  K  I  L  F  K  I  *  F  L  C  R  V  T  Y  V  M  A  *  Y  E  I  L  I  E  T  F  L  R  T  Y  M  L  F  P  N  S  V  S  W  L  *  K  I  *  R  L  E  E  S  G  R  V  E  G  G  K  D  Q  E  R  R  A  I  S  L  L  L  V  H  D  *  R  I  Y  L  E  S  Y  T  D  Y  F  L  C  I  I  L  A  S  I  L  V  *  Y  S  W  I  *  F  L  K  E  S  K  N  V  N  L  Q  K  E  T  K  E  A  L  C  F  N  F  V  G  *  S  F  L  M  R  C  F  V  K  Y  N  I  L  F  K  S  P  R  *  H  K  V  Q  S  K  I  S  D  R  S  S  F  F  L  S  K  *  F  I  L  G  A  V  R  G  K  V  K  Q  R  K  R  E  K  T  S  L  R  F  E  L  V  Y  </first_frame>
            <second_frame>  K  C  D  Y  L  S  C  F  R  S  I  E  H  H  T  K  R  I  C  Y  N  C  A  K  A  K  G  S  L  S  L  A  F  N  F  L  K  V  V  M  F  N  Y  L  I  L  *  E  D  D  V  L  L  V  E  N  Y  F  A  F  P  L  R  Y  A  C  T  L  S  *  H  F  T  L  L  V  K  *  Y  Q  D  G  L  S  Y  L  S  T  I  A  S  *  I  L  V  P  L  V  S  K  E  *  L  C  E  M  I  E  G  *  G  V  V  G  D  S  R  Y  C  S  K  F  N  F  C  V  E  *  P  M  L  W  L  S  M  K  F  L  L  R  H  F  S  V  P  T  C  C  F  L  I  Q  Y  L  G  F  R  K  F  R  G  W  K  R  V  G  E  W  R  E  G  R  I  K  K  E  E  P  F  P  F  C  L  C  M  I  R  G  F  I  *  N  H  I  Q  T  T  F  Y  A  S  F  *  L  Q  Y  W  C  N  I  P  G  S  D  F  L  K  N  Q  K  M  L  T  C  K  R  K  Q  K  K  H  C  V  L  T  L  L  G  N  P  F  S  *  D  A  S  *  S  I  T  Y  Y  L  K  V  L  D  D  I  K  Y  K  A  R  Y  R  T  E  A  L  F  S  *  V  S  D  L  S  L  E  L  *  G  G  R  *  S  K  G  R  E  R  K  Q  V  *  G  L  N  L  C  I </second_frame>
            <third_frame>   N  V  I  I  C  L  V  F  D  L  *  N  T  I  L  S  E  F  A  T  I  V  L  R  Q  R  V  L  F  R  *  P  L  I  F  *  K  *  *  C  L  T  I  L  Y  C  E  R  M  M  S  S  W  W  R  T  I  L  L  S  L  Y  A  T  P  A  H  Y  H  D  I  S  H  Y  W  *  S  N  I  K  M  V  Y  R  I  Y  L  P  L  H  H  K  Y  L  F  R  W  Y  Q  R  N  N  F  V  K  *  L  K  D  R  E  W  W  G  I  Q  D  I  V  Q  N  L  I  S  V  *  S  N  L  C  Y  G  L  V  *  N  S  Y  *  D  I  S  P  Y  L  H  V  V  S  *  F  S  I  L  A  L  E  N  L  E  V  G  R  E  W  E  S  G  G  R  E  G  S  R  K  K  S  H  F  P  F  A  C  A  *  L  E  D  L  F  R  I  I  Y  R  L  L  F  M  H  H  S  S  F  N  I  G  V  I  F  L  D  L  I  S  *  R  I  K  K  C  *  P  A  K  G  N  K  R  S  I  V  F  *  L  C  W  V  I  L  S  H  E  M  L  R  E  V  *  H  T  I  *  K  S  S  M  T  *  S  T  K  Q  D  I  G  Q  K  L  F  F  P  K  *  V  I  Y  P  W  S  C  K  G  E  G  K  A  K  E  E  R  E  N  K  F  E  V  *  T  C  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0101P06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="104019" PGL_stop="99935"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104019" e_stop="103440"/>
            <exon e_start="102829" e_stop="102679"/>
            <exon e_start="102593" e_stop="102411"/>
            <exon e_start="101847" e_stop="101773"/>
            <exon e_start="101674" e_stop="101519"/>
            <exon e_start="101432" e_stop="101337"/>
            <exon e_start="101234" e_stop="101101"/>
            <exon e_start="101005" e_stop="100924"/>
            <exon e_start="100519" e_stop="99935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="0.964"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.828" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="0.993"/>
          <exon-intron don_prob="0.997" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="104019" e_stop="103440" e_length="580"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="103439" i_stop="102830" i_length="610"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102829" e_stop="102679" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102678" i_stop="102594" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102593" e_stop="102411" e_length="183"/>
          </exon>
          <intron i_serial="3" don_prob="0.818" acc_prob="0.995">
            <gDNA_intron_boundary i_start="102410" i_stop="101848" i_length="563"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101847" e_stop="101773" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.929">
            <gDNA_intron_boundary i_start="101772" i_stop="101675" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="101674" e_stop="101519" e_length="156"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.828">
            <gDNA_intron_boundary i_start="101518" i_stop="101433" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101432" e_stop="101337" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.877">
            <gDNA_intron_boundary i_start="101336" i_stop="101235" i_length="102"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="101234" e_stop="101101" e_length="134"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="101100" i_stop="101006" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="101005" e_stop="100924" e_length="82"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.980">
            <gDNA_intron_boundary i_start="100923" i_stop="100520" i_length="404"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="100519" e_stop="99935" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104019" stop="103440"/>
              <exon start="102829" stop="102679"/>
              <exon start="102593" stop="102583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103803" stop="103440"/>
              <exon start="102829" stop="102679"/>
              <exon start="102593" stop="102411"/>
              <exon start="101847" stop="101773"/>
              <exon start="101674" stop="101519"/>
              <exon start="101432" stop="101337"/>
              <exon start="101234" stop="101101"/>
              <exon start="101005" stop="100924"/>
              <exon start="100519" stop="99935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328823" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAAAAGCTGTAATGCTCTCTGCTACGGTTTAGTTTCAGCACTATGAAAGTAACGAACAGTTTTATAGTTAGCCAAATTCTTATATTCTTTCATTAAATCCTCACATCATTATTTTATTGAAATTCAACTGTTTTTCATCATTATTTTATTTGAAATTCAACTGTTCAAACAAACTTTTTTTTTTTTTCAAGTGTTAAAAGTTGAGATCTTCAAACACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG : GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAG : GAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACT : GCGGGAAAAGATGTTGTTGCTTGTCTGAATGAAGCCATGGAGAGGCGGGGAATGGATATGCAAGTGTCTGCCCTG : GTCAATGACACTGTGGGAACACTTGCCGGAGCAAGATACTGGGATGATGATGCCATGGTTGCTGTCATTCTTGGGACTGGAACCAATGCTTGCTATGTAGAACGTGTGGATGCTATTCCTAAGCTGGCAAAAAGGATGTCTAAGTCTCCAATAACG : ATTGTGAATACCGAATGGGGAGCTTTCTCAAATGGCCTTCCTTTAACTGAGTTTGATAGAGAAATGGATGCCGAGAGCATTAACCCTGGTGAGCAG : ATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAAAAGCTAGTCACTCCATTTGTGCTGAG : GACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGG : GTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGTGTTCAAAGGTTTGCTTGAGGAAAAATACATGAGCATTTGTAATTTAGAATGTTCTAAAGAAGGATTGATGATTGGATTTATAGAGGCTCTTGTTTGTGATGCCATTTTTTGTACTCCCATTAATGAAGTACGAAGAAGTGAGGATTTATATAGCCAACCCCAATTTATTTGGAATCGAGGCGTAGTTGTAATTGTATTATATGCAGCACTGACTTATTTATGTGA</gDNA_template>
            <first_frame> Q  K  S  C  N  A  L  C  Y  G  L  V  S  A  L  *  K  *  R  T  V  L  *  L  A  K  F  L  Y  S  F  I  K  S  S  H  H  Y  F  I  E  I  Q  L  F  F  I  I  I  L  F  E  I  Q  L  F  K  Q  T  F  F  F  F  Q  V  L  K  V  E  I  F  K  H  S  V  S  T  S  P  F  I  V  S  L  F  F  S  V  T  Q  L  N  *  S  H  C  Y  L  K  C  R  S  P  L  A  R  R  P  S  D  P  S  M  F  H  D  H  L  I  K  R  S  L  G  H  V  S  L  Y  L  P  S  D  L  L  T  A  *  E  *  H  Q  F  *  R  S  C  R  K  I  V  L  L  L  F  Q  F  C  A  T  W  R  M  Q  W  P  M  I  *  G  P  G  L  P  S  T  A  A  V  I  *  R  *  S  L  V  M  S  T  L  Y  Q  L   : G  M  R  K  A  C  F  M  R  W  T  L  V  V  Q  I  S  G  C  *  G  C  S  *  V  V  K  K  S  V  *  S  P  L  S  L  S  K  S  L  Y  P  K  N  *  C  L  L  P  P  R :   S  F  S  I  S  *  L  L  R  *  E  N  L  H  K  R  K  V  V  I  L  S  C  N  R  D  G  Q  G  K  *  D  S  R  F  L  F  R  *  N  R  L  Q  *  E  L  E  S  *  S  N  G  Q  K  V  L  L  S  L  E  L :   R  E  K  M  L  L  L  V  *  M  K  P  W  R  G  G  E  W  I  C  K  C  L  P  W :   S  M  T  L  W  E  H  L  P  E  Q  D  T  G  M  M  M  P  W  L  L  S  F  L  G  L  E  P  M  L  A  M  *  N  V  W  M  L  F  L  S  W  Q  K  G  C  L  S  L  Q  *  R :   L  *  I  P  N  G  E  L  S  Q  M  A  F  L  *  L  S  L  I  E  K  W  M  P  R  A  L  T  L  V  S  R :   F  L  K  R  P  S  L  V  C  T  L  G  K  L  *  D  G  C  W  S  K  W  P  R  L  G  A  Y  L  V  A  A  M  F  R  K  S  *  S  L  H  L  C  *   : G  H  L  I  Y  V  P  C  S  R  I  H  Q  *  I  L  K  L  L  S  L  S  S  M  M  *  L  G :   *  N  P  I  *  V  Q  G  K  Q  S  W  T  F  A  I  L  L  Q  N  E  G  V  V  *  L  V  Q  E  L  L  V  Y  Y  R  K  W  R  K  I  L  K  V  S  S  L  V  K  E  Q  L  *  Q  W  M  E  A  Y  M  S  T  I  L  S  T  E  D  T  S  K  K  L  S  Q  S  Y  *  A  R  K  F  R  K  M  *  *  *  N  I  Q  K  M  D  L  V  L  E  L  H  Y  *  L  L  Q  I  Q  S  M  N  M  M  I  K  G  K  A  K  F  H  V  F  K  G  L  L  E  E  K  Y  M  S  I  C  N  L  E  C  S  K  E  G  L  M  I  G  F  I  E  A  L  V  C  D  A  I  F  C  T  P  I  N  E  V  R  R  S  E  D  L  Y  S  Q  P  Q  F  I  W  N  R  G  V  V  V  I  V  L  Y  A  A  L  T  Y  L  C   </first_frame>
            <second_frame>  R  K  A  V  M  L  S  A  T  V  *  F  Q  H  Y  E  S  N  E  Q  F  Y  S  *  P  N  S  Y  I  L  S  L  N  P  H  I  I  I  L  L  K  F  N  C  F  S  S  L  F  Y  L  K  F  N  C  S  N  K  L  F  F  F  F  K  C  *  K  L  R  S  S  N  T  L  F  Q  R  H  H  L  L  S  L  F  F  S  P  S  H  N  *  I  D  L  T  V  T  *  N  V  G  H  R  *  L  A  G  R  P  I  L  P  C  F  T  I  T  S  *  N  D  L  *  A  T  C  H  Y  I  C  R  P  I  Y  *  Q  L  R  S  S  T  N  F  D  E  V  A  E  R  L  C  Y  S  S  S  S  F  A  P  R  G  G  C  N  G  R  *  Y  E  G  R  A  C  R  R  R  R  Q  *  S  E  D  D  P  *  L  C  R  H  S  T  N  W  :  E  *  E  R  L  V  L  C  V  G  P  W  W  Y  K  F  P  G  A  K  G  A  A  R  W  *  R  R  A  C  S  R  H  *  V  *  A  S  L  Y  T  P  R  T  D  V  C  Y  L  R   : G  A  F  R  F  H  S  F  C  A  R  K  I  C  T  K  G  R  W  *  F  *  V  A  T  G  T  D  K  G  N  R  I  H  V  F  F  S  G  E  T  D  F  N  K  N  W  N  P  N  Q  M  D  K  R  F  C  C  L  W  N   : C  G  K  R  C  C  C  L  S  E  *  S  H  G  E  A  G  N  G  Y  A  S  V  C  P   : G  Q  *  H  C  G  N  T  C  R  S  K  I  L  G  *  *  C  H  G  C  C  H  S  W  D  W  N  Q  C  L  L  C  R  T  C  G  C  Y  S  *  A  G  K  K  D  V  *  V  S  N  N   : D  C  E  Y  R  M  G  S  F  L  K  W  P  S  F  N  *  V  *  *  R  N  G  C  R  E  H  *  P  W  *  A   : D  F  *  K  D  H  L  W  Y  V  P  W  G  N  C  E  T  G  A  G  Q  N  G  Q  G  W  G  L  I  W  *  Q  L  C  S  G  K  A  S  H  S  I  C  A  E  :  D  T  *  Y  M  C  H  A  A  G  Y  I  N  R  S  *  S  C  *  V  C  P  L  *  C  S  W   : G  K  I  R  S  K  C  K  E  N  S  R  G  H  L  R  Y  Y  C  K  T  R  G  S  S  S  W  C  R  N  C  W  Y  I  T  E  N  G  G  R  F  *  R  S  H  L  W  *  K  N  S  C  S  N  G  W  R  L  I  *  A  L  S  S  V  Q  R  I  P  P  R  S  C  H  R  A  T  R  L  G  N  F  E  K  C  S  D  R  T  F  K  R  W  I  W  Y  W  S  C  I  I  S  C  C  K  F  K  V  *  T  *  *  L  R  E  K  L  N  F  M  C  S  K  V  C  L  R  K  N  T  *  A  F  V  I  *  N  V  L  K  K  D  *  *  L  D  L  *  R  L  L  F  V  M  P  F  F  V  L  P  L  M  K  Y  E  E  V  R  I  Y  I  A  N  P  N  L  F  G  I  E  A  *  L  *  L  Y  Y  M  Q  H  *  L  I  Y  V  </second_frame>
            <third_frame>   E  K  L  *  C  S  L  L  R  F  S  F  S  T  M  K  V  T  N  S  F  I  V  S  Q  I  L  I  F  F  H  *  I  L  T  S  L  F  Y  *  N  S  T  V  F  H  H  Y  F  I  *  N  S  T  V  Q  T  N  F  F  F  F  S  S  V  K  S  *  D  L  Q  T  L  C  F  N  V  T  I  Y  C  L  S  F  F  L  R  H  T  I  E  L  I  S  L  L  P  K  M  S  V  T  V  S  S  P  A  V  R  S  F  H  V  S  R  S  P  H  K  T  I  S  R  P  R  V  I  I  S  A  V  R  S  T  D  S  L  G  V  A  P  I  L  T  K  L  Q  K  D  C  A  T  P  L  P  V  L  R  H  V  A  D  A  M  A  D  D  M  R  A  G  L  A  V  D  G  G  S  D  L  K  M  I  L  S  Y  V  D  T  L  P  T  G :   N  E  K  G  L  F  Y  A  L  D  L  G  G  T  N  F  R  V  L  R  V  Q  L  G  G  K  E  E  R  V  V  A  T  E  F  E  Q  V  S  I  P  Q  E  L  M  F  A  T  S  E  :  E  L  F  D  F  I  A  S  A  L  G  K  F  A  Q  K  E  G  G  N  F  E  L  Q  Q  G  R  T  R  E  I  G  F  T  F  S  F  P  V  K  Q  T  S  I  R  T  G  I  L  I  K  W  T  K  G  F  A  V  S  G  T  :  A  G  K  D  V  V  A  C  L  N  E  A  M  E  R  R  G  M  D  M  Q  V  S  A  L  :  V  N  D  T  V  G  T  L  A  G  A  R  Y  W  D  D  D  A  M  V  A  V  I  L  G  T  G  T  N  A  C  Y  V  E  R  V  D  A  I  P  K  L  A  K  R  M  S  K  S  P  I  T  :  I  V  N  T  E  W  G  A  F  S  N  G  L  P  L  T  E  F  D  R  E  M  D  A  E  S  I  N  P  G  E  Q  :  I  F  E  K  T  I  S  G  M  Y  L  G  E  I  V  R  R  V  L  V  K  M  A  K  V  G  G  L  F  G  S  S  Y  V  P  E  K  L  V  T  P  F  V  L  R :   T  P  D  I  C  A  M  Q  Q  D  T  S  I  D  L  E  A  V  E  S  V  L  Y  D  V  A  G  :  V  K  S  D  L  S  A  R  K  T  V  V  D  I  C  D  T  I  A  K  R  G  G  R  L  A  G  A  G  I  V  G  I  L  Q  K  M  E  E  D  S  K  G  L  I  F  G  K  R  T  V  V  A  M  D  G  G  L  Y  E  H  Y  P  Q  Y  R  G  Y  L  Q  E  A  V  T  E  L  L  G  S  E  I  S  K  N  V  V  I  E  H  S  K  D  G  S  G  I  G  A  A  L  L  A  A  A  N  S  K  Y  E  H  D  D  *  G  K  S  *  I  S  C  V  Q  R  F  A  *  G  K  I  H  E  H  L  *  F  R  M  F  *  R  R  I  D  D  W  I  Y  R  G  S  C  L  *  C  H  F  L  Y  S  H  *  *  S  T  K  K  *  G  F  I  *  P  T  P  I  Y  L  E  S  R  R  S  C  N  C  I  I  C  S  T  D  L  F  M  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103813" stop="103440"/>
                    <exon start="102829" stop="102679"/>
                    <exon start="102593" stop="102411"/>
                    <exon start="101847" stop="101773"/>
                    <exon start="101674" stop="101519"/>
                    <exon start="101432" stop="101337"/>
                    <exon start="101234" stop="101101"/>
                    <exon start="101005" stop="100924"/>
                    <exon start="100519" stop="100181"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1587</number_coding_nucleotides>
                  <number_encoded_amino_acids>529</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLQTLCFNVTIYCLSFFLRHTIELISLLPKMSVTVSSPAVRSFHVSRSPHKTISRPRVIISAVRSTDSLGVAPILTKLQKDCATPLPVLRHVADAMADDMRAGLAVDGGSDLKMILSYVDTLPTGNEKGLFYALDLGGTNFRVLRVQLGGKEERVVATEFEQVSIPQELMFATSEELFDFIASALGKFAQKEGGNFELQQGRTREIGFTFSFPVKQTSIRTGILIKWTKGFAVSGTAGKDVVACLNEAMERRGMDMQVSALVNDTVGTLAGARYWDDDAMVAVILGTGTNACYVERVDAIPKLAKRMSKSPITIVNTEWGAFSNGLPLTEFDREMDAESINPGEQIFEKTISGMYLGEIVRRVLVKMAKVGGLFGSSYVPEKLVTPFVLRTPDICAMQQDTSIDLEAVESVLYDVAGVKSDLSARKTVVDICDTIAKRGGRLAGAGIVGILQKMEEDSKGLIFGKRTVVAMDGGLYEHYPQYRGYLQEAVTELLGSEISKNVVIEHSKDGSGIGAALLAAANSKYEHDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="117078" PGL_stop="113671"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117078" e_stop="116728"/>
            <exon e_start="116256" e_stop="116005"/>
            <exon e_start="115902" e_stop="115802"/>
            <exon e_start="114549" e_stop="113671"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.996"/>
          <exon-intron don_prob="0.995" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="117078" e_stop="116728" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.998">
            <gDNA_intron_boundary i_start="116727" i_stop="116257" i_length="471"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="116256" e_stop="116005" e_length="252"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="116004" i_stop="115903" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115902" e_stop="115802" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.976">
            <gDNA_intron_boundary i_start="115801" i_stop="114550" i_length="1252"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="114549" e_stop="113671" e_length="879"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117078" stop="116728"/>
              <exon start="116256" stop="116005"/>
              <exon start="115902" stop="115802"/>
              <exon start="114549" stop="113671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116127" stop="116005"/>
              <exon start="115902" stop="115802"/>
              <exon start="114549" stop="114375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG : GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG : GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG : TGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCTTTTTACATA</gDNA_template>
            <first_frame> K  L  L  S  L  F  F  S  Y  E  K  E  N  F  F  N  N  C  S  V  F  F  P  F  S  C  S  V  F  N  G  T  V  N  I  F  T  R  N  I  R  K  K  S  T  F  K  E  E  E  K  T  T  K  T  E  *  G  E  T  K  A  A  I  F  M  G  S  I  Q  K  L  I  D  L  *  T  N  *  K  L  N  C  S  *  S  C  F  Q  K  P  S  S  F  C  C  C  C  C  S  C  W  S  L  L  *  V  E  F  L  *  L  H  M  Q  F  Q  :  G  C  G  T  W  Q  H  K  S  G  T  *  S  *  *  F  P  R  K  *  Q  F  R  P  R  N  S  S  S  K  Q  E  *  N  F  T  S  *  S  F  I  F  K  F  E  I  S  C  *  I  K  R  *  W  *  L  H  I  H  Y  F  I  K  R  N  A  I  S  *  A  I  W  M  L  *  V  S  H  D  S  R  S  *  Q  :  V  P  F  T  K  V  N  N  L  C  M  S  R  L  W  R  S  F  S  K  N  *  E  L  R  T  S  S  S  S  *  T  C  C :   V  R  V  G  S  G  R  F  K  P  *  H  S  G  N  N  L  Q  I  K  L  A  *  K  G  *  S  D  L  *  D  R  T  D  I  K  S  P  Q  H  Q  T  H  D  P  T  V  R  G  L  *  G  R  G  E  D  T  C  S  G  H  R  Q  E  K  P  K  M  C  S  *  W  K  *  A  A  *  I  L  L  H  E  P  Y  V  R  P  W  C  T  W  L  V  Q  L  V  W  L  G  T  R  L  W  S  L  H  Y  H  T  S  R  F  P  R  K  Q  N  *  W  S  P  H  N  C  *  *  W  A  G  P  R  L  S  W  *  R  Y  G  P  T  Q  G  H  D  R  V  S  G  H  C  W  *  S  Q  A  E  C  G  R  F  S  H  E  R  G  G  E  L  L  W  L  W  F  W  F  W  F  W  L  V  C  Y  W  L  Y  H  I  Q  F  S  S  W  T  C  R  D  L  L  K  S  R  G  I  I  R  I  *  S  K  G  Y  T  S  M  L  C  C  D  I  R  S  I  G  I  L  G  L  M  F  F  F  F  *  F  V  L  E  L  F  V  R  F  S  L  F  F  S  F  L  L  C  P  *  I  Y  V  T  N  F  K  L  V  K  K  K  L  *  H  P  *  G  N  A  D  P  T  M  I  F  V  N  I  Y  L  F  Y  L  F  V  L  F  T   </first_frame>
            <second_frame>  N  F  S  L  S  F  S  L  M  K  K  R  T  S  S  T  I  A  L  F  F  S  H  F  L  A  L  F  L  M  A  L  L  T  F  L  P  E  T  S  E  K  N  Q  P  S  K  R  R  K  K  Q  Q  K  Q  N  K  E  K  Q  K  Q  P  S  S  W  D  Q  F  K  N  L  L  T  C  K  Q  I  E  N  S  T  V  H  D  P  A  S  K  N  P  P  P  S  A  A  A  A  A  P  A  G  A  Y  S  K  L  S  S  C  S  S  I  C  S  F  R :   D  V  V  H  G  N  T  R  V  V  H  R  A  D  N  S  P  E  S  S  S  L  G  Q  E  T  R  L  L  S  K  N  K  T  S  H  H  D  P  S  S  S  S  S  R  S  L  A  R  S  N  G  N  G  S  S  T  Y  T  T  S  S  R  G  M  Q  F  R  K  L  S  G  C  Y  E  C  H  M  I  V  D  P  S  R :   Y  P  L  P  R  S  T  I  C  A  C  P  D  C  G  E  V  F  P  K  I  E  S  L  E  H  H  Q  A  V  K  H  A   : V  S  E  L  G  P  E  D  S  S  R  N  I  V  E  I  I  F  K  S  S  W  L  K  K  D  N  P  I  C  K  I  E  R  I  L  K  V  H  N  T  K  R  T  I  Q  R  F  E  D  C  R  D  A  V  K  I  H  A  V  A  T  G  K  K  N  P  R  C  A  A  D  G  N  E  L  L  R  F  Y  C  T  S  L  T  C  V  L  G  A  R  G  S  S  S  L  C  G  S  V  P  G  C  G  V  C  T  T  I  R  H  G  F  Q  G  N  K  T  S  G  V  R  T  T  A  S  S  G  R  A  H  D  C  L  G  S  G  M  A  R  R  R  A  M  I  V  C  R  V  I  A  G  R  V  K  Q  N  V  G  A  S  P  T  K  E  E  E  N  C  S  G  S  G  S  G  S  G  S  G  L  S  A  T  G  S  T  I  Y  N  S  V  A  G  H  V  G  I  Y  S  N  L  E  E  L  Y  V  F  N  P  R  A  I  L  P  C  F  V  V  I  Y  E  A  L  E  S  *  A  *  C  F  F  F  F  N  L  Y  L  S  C  L  Y  G  L  V  C  F  F  L  F  C  C  V  L  K  F  M  *  L  I  S  S  *  L  K  K  S  C  N  T  R  E  V  M  L  I  Q  L  *  F  L  *  I  F  I  Y  F  I  Y  L  S  F  L  H  </second_frame>
            <third_frame>   T  S  L  S  L  F  L  L  *  K  R  E  L  L  Q  Q  L  L  C  F  F  P  I  F  L  L  C  F  *  W  H  C  *  H  F  Y  Q  K  H  Q  K  K  I  N  L  Q  R  G  G  K  N  N  K  N  R  I  R  R  N  K  S  S  H  L  H  G  I  N  S  K  T  Y  *  L  V  N  K  L  K  T  Q  L  F  M  I  L  L  P  K  T  L  L  L  L  L  L  L  L  L  L  L  E  L  T  L  S  *  V  L  V  A  P  Y  A  V  S   : G  M  W  Y  M  A  T  Q  E  W  Y  I  E  L  I  I  P  Q  K  V  A  V  *  A  K  K  L  V  F  *  A  R  I  K  L  H  I  M  I  L  H  L  Q  V  R  D  L  L  L  D  Q  T  V  M  V  A  P  H  T  L  L  H  Q  E  E  C  N  F  V  S  Y  L  D  V  M  S  V  T  *  *  *  I  L  A   : G  T  L  Y  Q  G  Q  Q  F  V  H  V  Q  I  V  E  K  F  F  Q  K  L  R  A  *  N  I  I  K  Q  L  N  M  L  :  C  Q  S  W  V  R  K  I  Q  A  V  T  *  W  K  *  S  S  N  Q  A  G  L  K  R  I  I  R  S  V  R  S  N  G  Y  *  K  S  T  T  P  N  A  R  S  N  G  S  R  T  V  G  T  R  *  R  Y  M  Q  W  P  Q  A  R  K  T  Q  D  V  Q  L  M  E  M  S  C  L  D  F  T  A  R  A  L  R  A  S  L  V  H  V  A  R  P  A  C  V  A  R  Y  P  V  V  E  F  A  L  P  Y  V  T  V  S  K  E  T  K  L  V  E  S  A  Q  L  L  V  V  G  G  P  T  I  V  L  V  A  V  W  P  D  A  G  P  *  S  C  V  G  S  L  L  V  E  S  S  R  M  W  A  L  L  P  R  K  R  R  R  I  A  L  A  L  V  L  V  L  V  L  A  C  L  L  L  A  L  P  Y  T  I  Q  *  L  D  M  *  G  F  T  Q  I  S  R  N  Y  T  Y  L  I  Q  G  L  Y  F  H  A  L  L  *  Y  T  K  H  W  N  L  R  L  N  V  F  F  F  L  I  C  T  *  A  V  C  T  V  *  F  V  F  F  F  F  V  V  S  L  N  L  C  N  *  F  Q  V  S  *  K  K  V  V  T  P  V  R  *  C  *  S  N  Y  D  F  C  K  Y  L  F  I  L  F  I  C  P  F  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117077" stop="116728"/>
                    <exon start="116256" stop="116005"/>
                    <exon start="115902" stop="115802"/>
                    <exon start="114549" stop="113873"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1377</number_coding_nucleotides>
                  <number_encoded_amino_acids>459</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFSLSFSLMKKRTSSTIALFFSHFLALFLMALLTFLPETSEKNQPSKRRKKQQKQNKEKQKQPSSWDQFKNLLTCKQIENSTVHDPASKNPPPSAAAAAPAGAYSKLSSCSSICSFRDVVHGNTRVVHRADNSPESSSLGQETRLLSKNKTSHHDPSSSSSRSLARSNGNGSSTYTTSSRGMQFRKLSGCYECHMIVDPSRYPLPRSTICACPDCGEVFPKIESLEHHQAVKHAVSELGPEDSSRNIVEIIFKSSWLKKDNPICKIERILKVHNTKRTIQRFEDCRDAVKIHAVATGKKNPRCAADGNELLRFYCTSLTCVLGARGSSSLCGSVPGCGVCTTIRHGFQGNKTSGVRTTASSGRAHDCLGSGMARRRAMIVCRVIAGRVKQNVGASPTKEEENCSGSGSGSGSGLSATGSTIYNSVAGHVGIYSNLEELYVFNPRAILPCFVVIYEALES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="120532" PGL_stop="126559"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120532" e_stop="120775"/>
            <exon e_start="120930" e_stop="121057"/>
            <exon e_start="122067" e_stop="122175"/>
            <exon e_start="122614" e_stop="122695"/>
            <exon e_start="122766" e_stop="122836"/>
            <exon e_start="123514" e_stop="123555"/>
            <exon e_start="123838" e_stop="123962"/>
            <exon e_start="124266" e_stop="124359"/>
            <exon e_start="124514" e_stop="124580"/>
            <exon e_start="124693" e_stop="124880"/>
            <exon e_start="124963" e_stop="125068"/>
            <exon e_start="125616" e_stop="125702"/>
            <exon e_start="126080" e_stop="126559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.972" e_score="0.996"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="0.992"/>
          <exon-intron don_prob="0.875" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.729" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.145" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="120532" e_stop="120775" e_length="244"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="120776" i_stop="120929" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120930" e_stop="121057" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="121058" i_stop="122066" i_length="1009"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="122067" e_stop="122175" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122176" i_stop="122613" i_length="438"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122614" e_stop="122695" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.615" acc_prob="0.999">
            <gDNA_intron_boundary i_start="122696" i_stop="122765" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122766" e_stop="122836" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.976">
            <gDNA_intron_boundary i_start="122837" i_stop="123513" i_length="677"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123514" e_stop="123555" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.917">
            <gDNA_intron_boundary i_start="123556" i_stop="123837" i_length="282"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="123838" e_stop="123962" e_length="125"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="123963" i_stop="124265" i_length="303"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="124266" e_stop="124359" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.875" acc_prob="0.990">
            <gDNA_intron_boundary i_start="124360" i_stop="124513" i_length="154"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="124514" e_stop="124580" e_length="67"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.729">
            <gDNA_intron_boundary i_start="124581" i_stop="124692" i_length="112"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="124693" e_stop="124880" e_length="188"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="124881" i_stop="124962" i_length="82"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="124963" e_stop="125068" e_length="106"/>
          </exon>
          <intron i_serial="11" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="125069" i_stop="125615" i_length="547"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="125616" e_stop="125702" e_length="87"/>
          </exon>
          <intron i_serial="12" don_prob="0.145" acc_prob="0.995">
            <gDNA_intron_boundary i_start="125703" i_stop="126079" i_length="377"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="126080" e_stop="126559" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120532" stop="120775"/>
              <exon start="120930" stop="121057"/>
              <exon start="122067" stop="122175"/>
              <exon start="122614" stop="122695"/>
              <exon start="122766" stop="122836"/>
              <exon start="123514" stop="123555"/>
              <exon start="123838" stop="123962"/>
              <exon start="124266" stop="124359"/>
              <exon start="124514" stop="124580"/>
              <exon start="124693" stop="124880"/>
              <exon start="124963" stop="125068"/>
              <exon start="125616" stop="125702"/>
              <exon start="126080" stop="126559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCGTTTAGGGTTCTAGGGTTTAAACTAACAGAGAACTGAAGCTTATAGTGTAACTTCCTTCTCTACTGCTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC : GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG : GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA : GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA : GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAG : CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG : ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAG : GTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAG : AATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAG : GAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGAGGCCATCAAGTCGTGGAAAGAAAACGGTTTTTCCAG : CCTAATAATTGCTGCTCCGGAACTGGACCCATGGGGCATTATTAAAGAAGTGCTTCCTCTTTTATCATTTTCAGCTCCTTTTGCTGTTTATCACCAGTATGCTCAG : CCCCTAGCTACGTGTATGCACAACCTGCAGATTGAGAAAATGGCGATTGGATTACAAATTTCTGAACCTTGGCTACGTGAATATCAG : GTACTCCCATCAAGAACCCATCCACATATGCAGATGAGCGCGTTTGGTGGTTATATACTAAGTGGCACGAAAATATCGAGCAGTGACTCCCTTACCAGCTCTAACTAGGATAAATTTTTTTGGCATCTCACTCTGCTTGGTTGTACATGTCGCTTGACGATACCATTTTCGTCTTTCGAGAATATTCCCTGTTAGAATAGATGTAGGGATTATCTTGTCTCTTTTCTGGGGCAGAAACAAGGTTACTCATGTTGTACTTTTATTCATTGATTGATGTATGCTTGCTTTTGTATGAGCAATTCTTCTAAATCAAAAGACTAAAGGGTCTTTTTCCTCTTACTTTATAAAGTATTTGAAGATTAAGTGGTAAATTGTAGAATTATATTGTTGTCTTTCTTGGATCAAGCAATTGAAGTCTGTTTTGTTGAAGAAATATAAAATATGTAATACAACATTAACAATTATTCTTCAACTCCAAAC</gDNA_template>
            <first_frame> H  R  L  G  F  *  G  L  N  *  Q  R  T  E  A  Y  S  V  T  S  F  S  T  A  S  S  N  A  *  R  L  N  F  *  Q  Q  K  C  L  L  K  K  Q  L  M  R  I  R  S  K  I  I  I  V  D  *  L  M  K  V  A  M  Y  C  L  T  S  M  M  A  T  V  *  F  F  L  V  L  L  L  P   : R  H  *  K  L  G  I  R  S  V  L  F  S  L  L  *  V  V  H  S  G  L  C  F  K  W  S  R  E  K  K  E  P  F  *  L  V  L  L  R  M  Q  K  :  V  T  A  L  K  K  K  T  W  M  D  L  K  T  T  V  R  L  L  I  I  I  L  L  R  V  S  L  V  K  I  L  T  R  C  E   : S  R  E  Q  K  G  M  K  *  L  K  H  S  L  Q  T  V  Q  L  L  R  R  R  H  Y  F  H  K :   I  S  I  G  L  R  N  R  R  N  M  H  L  E  Y  F  *  G  A  P  L  H  E   : A  F  V  R  P  T  S  R  N  I  L  K  K  S   : D  S  C  E  W  M  H  Y  L  Y  C  S  P  W  G  M  L  L  Q  M  Q  M  Y  L  *  W  T  C  S  V  V  F  L  L  V  L  L  Q  N  D  L  E  :  V  L  V  M  C  A  I  L  I  V  D  H  H  H  I  L  S  I  S  Q  G  C  L  I  *  A  M  K  S  V  K   : E  S  C  M  H  H  *  P  T  *  I  H  F  K  L  E  L  Q  C  L  R  V  R :   K  K  P  Y  L  S  L  I  L  V  V  *  T  K  L  V  C  Q  L  K  M  V  A  W  M  *  H  L  R  E  F  L  L  Q  *  S  S  L  L  N  L  *  K  Q  V  R  K  Q  P  S  R  P  S  S  R  G  K  K  T  V  F  P   : A  *  *  L  L  L  R  N  W  T  H  G  A  L  L  K  K  C  F  L  F  Y  H  F  Q  L  L  L  L  F  I  T  S  M  L  S :   P  *  L  R  V  C  T  T  C  R  L  R  K  W  R  L  D  Y  K  F  L  N  L  G  Y  V  N  I  R :   Y  S  H  Q  E  P  I  H  I  C  R  *  A  R  L  V  V  I  Y  *  V  A  R  K  Y  R  A  V  T  P  L  P  A  L  T  R  I  N  F  F  G  I  S  L  C  L  V  V  H  V  A  *  R  Y  H  F  R  L  S  R  I  F  P  V  R  I  D  V  G  I  I  L  S  L  F  W  G  R  N  K  V  T  H  V  V  L  L  F  I  D  *  C  M  L  A  F  V  *  A  I  L  L  N  Q  K  T  K  G  S  F  S  S  Y  F  I  K  Y  L  K  I  K  W  *  I  V  E  L  Y  C  C  L  S  W  I  K  Q  L  K  S  V  L  L  K  K  Y  K  I  C  N  T  T  L  T  I  I  L  Q  L  Q   </first_frame>
            <second_frame>  I  V  *  G  S  R  V  *  T  N  R  E  L  K  L  I  V  *  L  P  S  L  L  L  H  L  M  L  K  D  *  I  F  S  S  K  N  V  Y  *  R  S  S  *  *  G  F  E  A  K  S  *  *  *  I  N  L  *  R  L  Q  C  I  A  *  H  Q  *  W  R  P  F  S  F  F  S  S  Y  C  C  L  :  D  I  E  N  W  E  *  E  V  F  S  S  A  S  Y  R  L  S  I  R  V  S  V  S  S  G  A  G  K  R  R  N  L  F  D  S  F  C  *  E  C  R  R :   *  R  P  *  R  K  R  R  G  W  I  *  R  Q  P  C  A  C  *  *  *  Y  C  S  E  S  H  *  *  R  Y  *  R  D  A  K  :  A  G  S  K  R  G  *  N  S  *  S  T  H  C  K  Q  C  N  F  *  E  E  D  I  I  F  T   : R  *  V  *  G  *  E  T  E  E  I  C  T  S  S  T  F  E  A  P  L  C  T  K  :  H  L  *  G  L  L  Q  E  T  S  *  K  N  R  :  I  H  A  S  G  C  T  I  S  T  A  L  L  G  E  C  Y  C  K  C  R  C  T  C  S  G  H  A  Q  W  Y  S  Y  W  C  Y  C  R  T  T  W  R :   Y  W  L  C  V  Q  Y  L  S  W  I  I  T  I  S  C  R  Y  H  K  D  V  *  F  K  R  *  N  L  *  K  :  N  R  A  C  I  T  D  R  P  E  F  I  S  N  W  S  F  S  V  *  G  S   : G  R  N  L  T  C  H  S  F  W  W  S  R  R  S  *  C  A  S  *  R  W  W  H  G  C  N  T  *  E  S  F  F  S  N  N  Q  A  C  *  I  Y  K  S  R  S  E  S  N  P  R  G  H  Q  V  V  E  R  K  R  F  F  Q  :  P  N  N  C  C  S  G  T  G  P  M  G  H  Y  *  R  S  A  S  S  F  I  I  F  S  S  F  C  C  L  S  P  V  C  S   : A  P  S  Y  V  Y  A  Q  P  A  D  *  E  N  G  D  W  I  T  N  F  *  T  L  A  T  *  I  S   : G  T  P  I  K  N  P  S  T  Y  A  D  E  R  V  W  W  L  Y  T  K  W  H  E  N  I  E  Q  *  L  P  Y  Q  L  *  L  G  *  I  F  L  A  S  H  S  A  W  L  Y  M  S  L  D  D  T  I  F  V  F  R  E  Y  S  L  L  E  *  M  *  G  L  S  C  L  F  S  G  A  E  T  R  L  L  M  L  Y  F  Y  S  L  I  D  V  C  L  L  L  Y  E  Q  F  F  *  I  K  R  L  K  G  L  F  P  L  T  L  *  S  I  *  R  L  S  G  K  L  *  N  Y  I  V  V  F  L  G  S  S  N  *  S  L  F  C  *  R  N  I  K  Y  V  I  Q  H  *  Q  L  F  F  N  S  K  </second_frame>
            <third_frame>   S  F  R  V  L  G  F  K  L  T  E  N  *  S  L  *  C  N  F  L  L  Y  C  F  I  *  C  L  K  I  E  F  L  A  A  K  M  S  I  E  E  A  V  D  E  D  S  K  Q  N  H  N  S  R  L  T  Y  E  G  C  N  V  L  L  D  I  N  D  G  D  R  L  V  F  S  R  L  T  A  A  S :   T  L  K  I  G  N  K  K  C  S  L  Q  P  L  I  G  C  P  F  G  S  L  F  Q  V  E  P  G  K  E  G  T  F  L  T  R  F  V  E  N  A  E   : G  N  G  L  E  E  K  D  V  D  G  S  K  D  N  R  A  L  V  D  N  N  T  A  Q  S  L  T  S  E  D  I  D  E  M  R  K :   Q  G  A  K  G  D  E  I  V  E  A  L  I  A  N  S  A  T  F  E  K  K  T  L  F  S  Q  :  D  K  Y  R  V  K  K  Q  K  K  Y  A  P  R  V  L  L  R  R  P  F  A  R  S :   I  C  E  A  Y  F  K  K  H  P  E  K  I  G :   F  M  R  V  D  A  L  S  L  L  L  S  L  G  N  V  T  A  N  A  D  V  L  V  V  D  M  L  S  G  I  L  T  G  A  I  A  E  R  L  G   : G  T  G  Y  V  C  N  T  Y  R  G  S  S  P  Y  P  V  D  I  T  R  M  F  N  L  S  D  E  I  C  K  R :   I  V  H  A  S  L  T  D  L  N  S  F  Q  T  G  A  S  V  S  E  G  Q  :  E  E  T  L  P  V  T  H  S  G  G  L  D  E  V  S  V  P  A  E  D  G  G  M  D  V  T  P  E  R  V  S  S  P  I  I  K  P  V  K  S  I  K  A  G  Q  K  A  T  L  E  A  I  K  S  W  K  E  N  G  F  S  S :   L  I  I  A  A  P  E  L  D  P  W  G  I  I  K  E  V  L  P  L  L  S  F  S  A  P  F  A  V  Y  H  Q  Y  A  Q  :  P  L  A  T  C  M  H  N  L  Q  I  E  K  M  A  I  G  L  Q  I  S  E  P  W  L  R  E  Y  Q  :  V  L  P  S  R  T  H  P  H  M  Q  M  S  A  F  G  G  Y  I  L  S  G  T  K  I  S  S  S  D  S  L  T  S  S  N  *  D  K  F  F  W  H  L  T  L  L  G  C  T  C  R  L  T  I  P  F  S  S  F  E  N  I  P  C  *  N  R  C  R  D  Y  L  V  S  F  L  G  Q  K  Q  G  Y  S  C  C  T  F  I  H  *  L  M  Y  A  C  F  C  M  S  N  S  S  K  S  K  D  *  R  V  F  F  L  L  L  Y  K  V  F  E  D  *  V  V  N  C  R  I  I  L  L  S  F  L  D  Q  A  I  E  V  C  F  V  E  E  I  *  N  M  *  Y  N  I  N  N  Y  S  S  T  P  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120612" stop="120775"/>
                    <exon start="120930" stop="121057"/>
                    <exon start="122067" stop="122175"/>
                    <exon start="122614" stop="122695"/>
                    <exon start="122766" stop="122836"/>
                    <exon start="123514" stop="123555"/>
                    <exon start="123838" stop="123962"/>
                    <exon start="124266" stop="124359"/>
                    <exon start="124514" stop="124580"/>
                    <exon start="124693" stop="124880"/>
                    <exon start="124963" stop="125068"/>
                    <exon start="125616" stop="125702"/>
                    <exon start="126080" stop="126187"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1368</number_coding_nucleotides>
                  <number_encoded_amino_acids>456</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLKIEFLAAKMSIEEAVDEDSKQNHNSRLTYEGCNVLLDINDGDRLVFSRLTAASTLKIGNKKCSLQPLIGCPFGSLFQVEPGKEGTFLTRFVENAEGNGLEEKDVDGSKDNRALVDNNTAQSLTSEDIDEMRKQGAKGDEIVEALIANSATFEKKTLFSQDKYRVKKQKKYAPRVLLRRPFARSICEAYFKKHPEKIGFMRVDALSLLLSLGNVTANADVLVVDMLSGILTGAIAERLGGTGYVCNTYRGSSPYPVDITRMFNLSDEICKRIVHASLTDLNSFQTGASVSEGQEETLPVTHSGGLDEVSVPAEDGGMDVTPERVSSPIIKPVKSIKAGQKATLEAIKSWKENGFSSLIIAAPELDPWGIIKEVLPLLSFSAPFAVYHQYAQPLATCMHNLQIEKMAIGLQISEPWLREYQVLPSRTHPHMQMSAFGGYILSGTKISSSDSLTSSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="133488" PGL_stop="134492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133488" e_stop="133540"/>
            <exon e_start="133735" e_stop="133909"/>
            <exon e_start="134199" e_stop="134492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.650" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="133488" e_stop="133540" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.650">
            <gDNA_intron_boundary i_start="133541" i_stop="133734" i_length="194"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="133735" e_stop="133909" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="133910" i_stop="134198" i_length="289"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="134199" e_stop="134492" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133488" stop="133540"/>
              <exon start="133735" stop="133909"/>
              <exon start="134199" stop="134492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATAAGCTTATTCTTAGAAGCACAACAGGGCCGATAGATTTGTTTCTCTTGAG : CAAACAGGGTAGGCAGCATGAGGACATAACCATCAAACATGACAAGTCCATGGATTCAGTGTCTGCTGCAAAAAAGATGGATGATGCTTACCCATCCCCAGCACATCCTTGCTCTTTAGATTCAACAGACTCAAAGCTCTCGGGTGTCCATAAAATAGTACCTTCTCATAACAGT : ATAGATGATGATTACTGGTTGCGCTCGGAGGAGGCGGTTAGCGCAACTGCTCTGTGGGGCATTGAATAATCTTTAAAATTGAGCCTGGTTACAAACTCCATATATGGATACCAGAAGATATACAGAAATAAGGCTTCTTATAAACATGTAAATATCTTTTGAAGCTAAAAAGCTTTACATATCTCTAGCCAGATTATAGTAAGAAACAACTGGTTTCAGGGAAACTCCTACAACTTTTGCGTACAACTATATGGTTCACAGGAATATCAGTCTTATGATTAACCAATGCTGGGA</gDNA_template>
            <first_frame> Y  K  L  I  L  R  S  T  T  G  P  I  D  L  F  L  L  S :   K  Q  G  R  Q  H  E  D  I  T  I  K  H  D  K  S  M  D  S  V  S  A  A  K  K  M  D  D  A  Y  P  S  P  A  H  P  C  S  L  D  S  T  D  S  K  L  S  G  V  H  K  I  V  P  S  H  N  S  :  I  D  D  D  Y  W  L  R  S  E  E  A  V  S  A  T  A  L  W  G  I  E  *  S  L  K  L  S  L  V  T  N  S  I  Y  G  Y  Q  K  I  Y  R  N  K  A  S  Y  K  H  V  N  I  F  *  S  *  K  A  L  H  I  S  S  Q  I  I  V  R  N  N  W  F  Q  G  N  S  Y  N  F  C  V  Q  L  Y  G  S  Q  E  Y  Q  S  Y  D  *  P  M  L  G </first_frame>
            <second_frame>  I  S  L  F  L  E  A  Q  Q  G  R  *  I  C  F  S  *   : A  N  R  V  G  S  M  R  T  *  P  S  N  M  T  S  P  W  I  Q  C  L  L  Q  K  R  W  M  M  L  T  H  P  Q  H  I  L  A  L  *  I  Q  Q  T  Q  S  S  R  V  S  I  K  *  Y  L  L  I  T  V :   *  M  M  I  T  G  C  A  R  R  R  R  L  A  Q  L  L  C  G  A  L  N  N  L  *  N  *  A  W  L  Q  T  P  Y  M  D  T  R  R  Y  T  E  I  R  L  L  I  N  M  *  I  S  F  E  A  K  K  L  Y  I  S  L  A  R  L  *  *  E  T  T  G  F  R  E  T  P  T  T  F  A  Y  N  Y  M  V  H  R  N  I  S  L  M  I  N  Q  C  W   </second_frame>
            <third_frame>   *  A  Y  S  *  K  H  N  R  A  D  R  F  V  S  L  E  :  Q  T  G  *  A  A  *  G  H  N  H  Q  T  *  Q  V  H  G  F  S  V  C  C  K  K  D  G  *  C  L  P  I  P  S  T  S  L  L  F  R  F  N  R  L  K  A  L  G  C  P  *  N  S  T  F  S  *  Q   : Y  R  *  *  L  L  V  A  L  G  G  G  G  *  R  N  C  S  V  G  H  *  I  I  F  K  I  E  P  G  Y  K  L  H  I  W  I  P  E  D  I  Q  K  *  G  F  L  *  T  C  K  Y  L  L  K  L  K  S  F  T  Y  L  *  P  D  Y  S  K  K  Q  L  V  S  G  K  L  L  Q  L  L  R  T  T  I  W  F  T  G  I  S  V  L  *  L  T  N  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133488" stop="133540"/>
                    <exon start="133735" stop="133909"/>
                    <exon start="134199" stop="134267"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKLILRSTTGPIDLFLLSKQGRQHEDITIKHDKSMDSVSAAKKMDDAYPSPAHPCSLDSTDSKLSGVHKIVPSHNSIDDDYWLRSEEAVSATALWGIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="135626" PGL_stop="135199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135626" e_stop="135199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="135626" e_stop="135199" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135626" stop="135199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332355" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGACAAGGACCTCAAACAACCCTTGATTTATGTCATCAAGTACTTAACCCCCCATGGTAATTTGAATATGTAGTTTATATACATCGGAAAAAGGATTGGTTCTTCAATGTACATCTGGCATATCTTAGTTCATTCATTACTGTTGTCCATGATTTTTTAGCATGGCTCGAAAAGTATAAGGGTCGTCGAGTGTGTAGGATTGCCAGATGCAATTACCATTCATTATTAAATATCCAAATTATAGTACTTACGTTTGTGTGAAGGTGGGAAAATGATCATGAATCTATGAAGTTAAGAGTTATCTTAGAGGATCACTGTACATACATATAAACATCTGGTTCTTGAGATGGCTTGGTTGATGTACTGAATGGTAATTGGAATGGGACTGGGCTTCTATAATTGTATCTCTTCTAATAAACTTTTGAA</gDNA_template>
            <first_frame> K  D  K  D  L  K  Q  P  L  I  Y  V  I  K  Y  L  T  P  H  G  N  L  N  M  *  F  I  Y  I  G  K  R  I  G  S  S  M  Y  I  W  H  I  L  V  H  S  L  L  L  S  M  I  F  *  H  G  S  K  S  I  R  V  V  E  C  V  G  L  P  D  A  I  T  I  H  Y  *  I  S  K  L  *  Y  L  R  L  C  E  G  G  K  M  I  M  N  L  *  S  *  E  L  S  *  R  I  T  V  H  T  Y  K  H  L  V  L  E  M  A  W  L  M  Y  *  M  V  I  G  M  G  L  G  F  Y  N  C  I  S  S  N  K  L  L   </first_frame>
            <second_frame>  K  T  R  T  S  N  N  P  *  F  M  S  S  S  T  *  P  P  M  V  I  *  I  C  S  L  Y  T  S  E  K  G  L  V  L  Q  C  T  S  G  I  S  *  F  I  H  Y  C  C  P  *  F  F  S  M  A  R  K  V  *  G  S  S  S  V  *  D  C  Q  M  Q  L  P  F  I  I  K  Y  P  N  Y  S  T  Y  V  C  V  K  V  G  K  *  S  *  I  Y  E  V  K  S  Y  L  R  G  S  L  Y  I  H  I  N  I  W  F  L  R  W  L  G  *  C  T  E  W  *  L  E  W  D  W  A  S  I  I  V  S  L  L  I  N  F  *  </second_frame>
            <third_frame>   R  Q  G  P  Q  T  T  L  D  L  C  H  Q  V  L  N  P  P  W  *  F  E  Y  V  V  Y  I  H  R  K  K  D  W  F  F  N  V  H  L  A  Y  L  S  S  F  I  T  V  V  H  D  F  L  A  W  L  E  K  Y  K  G  R  R  V  C  R  I  A  R  C  N  Y  H  S  L  L  N  I  Q  I  I  V  L  T  F  V  *  R  W  E  N  D  H  E  S  M  K  L  R  V  I  L  E  D  H  C  T  Y  I  *  T  S  G  S  *  D  G  L  V  D  V  L  N  G  N  W  N  G  T  G  L  L  *  L  Y  L  F  *  *  T  F  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135564" stop="135364"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEYVVYIHRKKDWFFNVHLAYLSSFITVVHDFLAWLEKYKGRRVCRIARCNYHSLLNIQIIVLTFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="141683" PGL_stop="145029"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="141683" e_stop="141700"/>
            <exon e_start="141976" e_stop="142024"/>
            <exon e_start="142116" e_stop="142249"/>
            <exon e_start="142660" e_stop="142732"/>
            <exon e_start="143300" e_stop="143382"/>
            <exon e_start="144117" e_stop="144155"/>
            <exon e_start="144272" e_stop="144342"/>
            <exon e_start="144410" e_stop="144524"/>
            <exon e_start="144601" e_stop="145029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.667"/>
          <exon-intron don_prob="0.969" acc_prob="1.000" e_score="0.939"/>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.973"/>
          <exon-intron don_prob="0.986" acc_prob="0.939" e_score="0.988"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.812" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="141683" e_stop="141700" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="141701" i_stop="141975" i_length="275"/>
          </intron>
          <exon e_serial="2" e_score="0.939">
            <gDNA_exon_boundary e_start="141976" e_stop="142024" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="1.000">
            <gDNA_intron_boundary i_start="142025" i_stop="142115" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="142116" e_stop="142249" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="142250" i_stop="142659" i_length="410"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="142660" e_stop="142732" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="143300" e_stop="143382" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.939">
            <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="144117" e_stop="144155" e_length="39"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="144272" e_stop="144342" e_length="71"/>
          </exon>
          <intron i_serial="7" don_prob="0.908" acc_prob="0.812">
            <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="144410" e_stop="144524" e_length="115"/>
          </exon>
          <intron i_serial="8" don_prob="0.865" acc_prob="0.982">
            <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="0.956">
            <gDNA_exon_boundary e_start="144601" e_stop="145029" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141683" stop="141700"/>
              <exon start="141976" stop="142024"/>
              <exon start="142116" stop="142249"/>
              <exon start="142660" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="145029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144647" stop="144944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGCAACTTTCTCTATA : ATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACA : AAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG : ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAG : GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG : ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG : GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA : ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT : AACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACATATAATTTGGTT</gDNA_template>
            <first_frame> L  A  T  F  S  I  :  M  E  S  A  L  L  S  A  S  R  F  T  T  A  L  H   : K  A  E  R  E  V  V  G  G  P  V  A  V  R  K  L  Q  S  S  F  Y  G  K  E  I  N  S  H  T  L  F  T  K  N  F  K  K  I  N  L  T  I  T  S  V  :  M  R  K  K  L  I  K  K  E  T  V  V  P  D  P  D  Y  R  I  P  I  V  L  L   : G  L  S  G  G  L  F  Y  V  E  N  L  P  A  A  V  P  I  G  L  L  G  L  L  L  L  F  Q  :  T  T  R  V  R  F  V  F  D  D  E  A  L  :  E  V  K  V  G  E  Q  L  E  E  S  G  E  N  V  F  V  G  G  K  N  R  W  K :   Y  S  S  F  V  N  W  E  L  W  W  P  N  F  P  I  L  V  Y  F  K  E  K  Q  T  K  P  E  G  Q  I  H  F  F  P  V  I  F  :  N  G  R  Q  L  Y  D  A  M  V  E  R  C  G  P  S  K  T  S  G  P  K  *  C  N  M  S  S  R  E  K  T  N  M  S  Q  T  N  H  T  I  R  I  C  G  K  G  M  K  L  N  E  V  K  E  L  V  S  *  V  T  R  C  G  F  I  N  *  C  I  F  P  F  M  F  L  H  V  C  K  I  T  K  I  N  Y  Q  S  E  Y  V  S  Q  L  T  K  S  C  I  I  C  I  T  I  T  V  *  K  A  V  T  G  C  K  L  Y  V  F  T  F  G  M  C  Y  K  F  *  L  I  Y  C  I  I  H  F  T  V  L  T  Y  N  L  V </first_frame>
            <second_frame>  S  Q  L  S  L  * :   W  R  A  L  F  S  L  L  P  A  S  L  L  L  C  T  :  K  Q  K  E  K  *  *  V  D  L  W  L  *  G  N  Y  R  A  H  S  M  A  K  R  L  I  V  I  L  F  S  L  K  T  S  K  K  S  I  S  L  S  P  Q  * :   C  G  R  N  *  *  R  R  R  L  L  F  L  I  Q  I  T  E  F  L  L  S  F  *  :  G  Y  L  V  V  Y  F  M  W  K  I  Y  P  Q  Q  F  L  L  V  F  L  D  Y  S  C  Y  S  R :   Q  Q  E  *  D  L  S  L  M  M  R  L  W :   R  *  K  L  G  S  N  S  R  S  Q  V  K  M  F  S  W  V  E  R  T  A  G   : N  I  L  H  L  *  T  G  S  Y  G  G  Q  T  F  R  F  W  F  I  L  K  R  N  R  Q  N  P  R  D  K  Y  T  F  S  Q  *  F  L :   T  G  G  N  C  T  M  L  W  W  R  D  V  A  L  Q  K  L  A  D  Q  S  S  A  T  *  A  P  G  R  R  R  I  *  A  R  Q  T  I  Q  S  E  F  V  A  K  V  *  S  S  T  R  L  R  N  S  S  V  E  S  Q  D  V  V  S  S  I  N  V  Y  S  L  S  C  F  Y  T  S  V  K  S  Q  R  *  T  I  N  L  S  M  C  H  N  S  Q  N  H  V  L  Y  V  S  P  L  L  Y  E  R  R  *  L  D  A  N  Y  M  Y  S  H  L  E  C  V  T  N  S  S  S  Y  I  V  S  Y  I  L  Q  F  *  H  I  I  W   </second_frame>
            <third_frame>   R  N  F  L  Y   : N  G  E  R  S  S  L  C  F  P  L  H  Y  C  S  A  Q :   S  R  K  R  S  S  R  W  T  C  G  C  E  E  I  T  E  L  I  L  W  Q  R  D  *  *  S  Y  S  F  H  *  K  L  Q  K  N  Q  S  H  Y  H  L  S   : D  A  E  E  T  D  K  E  G  D  C  C  S  *  S  R  L  P  N  S  Y  C  P  S  R :   V  I  W  W  F  I  L  C  G  K  S  T  R  S  S  S  Y  W  S  S  W  I  T  P  V  I  P   : D  N  K  S  E  I  C  L  *  *  *  G  S   : G  G  E  S  W  G  A  T  R  G  V  R  *  K  C  F  R  G  W  K  E  P  L  E  :  I  F  F  I  C  E  L  G  A  M  V  A  K  L  S  D  F  G  L  F  *  R  E  T  D  K  T  R  G  T  N  T  L  F  P  S  D  F   : *  R  E  A  T  V  R  C  Y  G  G  E  M  W  P  F  K  N  *  R  T  K  V  V  Q  H  E  L  Q  G  E  D  E  Y  E  P  D  K  P  Y  N  Q  N  L  W  Q  R  Y  E  A  Q  R  G  *  G  T  R  Q  L  S  H  K  M  W  F  H  Q  L  M  Y  I  P  F  H  V  F  T  R  L  *  N  H  K  D  K  L  S  I  *  V  C  V  T  T  H  K  I  M  Y  Y  M  Y  H  H  Y  C  M  K  G  G  N  W  M  Q  T  I  C  I  H  I  W  N  V  L  Q  I  L  A  H  I  L  Y  H  T  F  Y  S  S  N  I  *  F  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141683" stop="141700"/>
                    <exon start="141976" stop="142024"/>
                    <exon start="142116" stop="142249"/>
                    <exon start="142660" stop="142732"/>
                    <exon start="143300" stop="143382"/>
                    <exon start="144117" stop="144155"/>
                    <exon start="144272" stop="144342"/>
                    <exon start="144410" stop="144524"/>
                    <exon start="144601" stop="144669"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LATFSIMESALLSASRFTTALHKAEREVVGGPVAVRKLQSSFYGKEINSHTLFTKNFKKINLTITSVMRKKLIKKETVVPDPDYRIPIVLLGLSGGLFYVENLPAAVPIGLLGLLLLFQTTRVRFVFDDEALEVKVGEQLEESGENVFVGGKNRWKYSSFVNWELWWPNFPILVYFKEKQTKPEGQIHFFPVIFNGRQLYDAMVERCGPSKTSGPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="145620" PGL_stop="148637"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="145620" e_stop="146088"/>
            <exon e_start="146388" e_stop="146439"/>
            <exon e_start="148035" e_stop="148191"/>
            <exon e_start="148342" e_stop="148564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.648" e_score="0.994"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="145620" e_stop="146088" e_length="469"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="146388" e_stop="146439" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.945">
            <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="148035" e_stop="148191" e_length="157"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.648">
            <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="148342" e_stop="148564" e_length="223"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145620" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148191"/>
              <exon start="148342" stop="148564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337301" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAGTTGGTGTCAGTTTCAGAATTTCTTGTTTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT : GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC : AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG : GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTT</gDNA_template>
            <first_frame> N  S  W  C  Q  F  Q  N  F  L  F  F  *  F  *  *  *  Q  N  P  *  L  N  *  T  L  K  E  K  G  G  N  V  N  S  T  F  T  F  P  L  *  V  S  I  Y  Q  L  T  S  *  A  S  Y  S  F  F  F  F  F  H  S  E  I  S  S  N  M  S  *  A  K  F  V  P  M  Y  *  S  C  G  S  *  S  K  H  G  S  F  L  S  Q  V  L  F  L  C  F  S  P  *  L  L  F  N  F  S  *  S  H  M  G  F  F  Y  F  F  F  I  F  G  E  I  V  M  Y  L  A  G  D  S  N  Y  S  W  G  A  Q  C  C  Y  W  S  W  N  S  S  F  L  *  D  P  N  *  *  C   : C  K  K  R  E  H  S  A  L  L  P  L  H  W  H  W  C  S :   E  M  Q  I  L  H  G  Y  W  Q  C  D  G  G  A  W  R  G  *  D  R  S  L  S  V  H  Q  L  *  R  C  W  W  F  D  L  H  N  M  S  R  Q  W  H  S  T  S  V  P  *  S  Q  :  G  I  Q  G  R  *  L  D  M  E  E  Y  S  A  W  M  P  Q  L  V  Y  C  L  E  D  L  S  F  *  P  E  Y  I  D  T  K  L  C  K  I  H  L  C  S  S  P  L  S  A  F  L  S  F  H  I  F  L  S  P  S  V  L  T  C  N  L  *  Q  V  E  Q  Y  M  I  </first_frame>
            <second_frame>  T  V  G  V  S  F  R  I  S  C  F  S  D  S  D  D  S  K  I  H  S  *  T  K  H  *  K  K  R  E  E  M  L  T  A  P  S  L  S  R  F  K  S  P  F  I  S  S  P  L  K  L  P  T  L  S  S  S  F  F  T  Q  K  F  H  Q  T  C  R  R  R  N  S  Y  P  C  I  K  A  V  D  L  D  Q  N  T  V  L  F  F  L  K  F  S  F  C  V  F  L  H  D  Y  C  L  I  S  V  D  L  I  W  V  F  F  I  F  F  L  F  L  G  K  L  *  C  T  W  Q  V  I  A  I  T  V  G  V  L  S  V  A  I  G  V  G  I  P  V  F  Y  E  T  Q  I  D  N  A  :  A  K  R  E  N  T  Q  P  C  F  P  C  T  G  T  G  A   : Q  K  C  R  F  C  M  G  T  G  S  V  T  V  E  L  G  G  G  E  T  E  V  S  R  C  I  N  C  D  G  A  G  G  L  T  C  T  T  C  Q  G  S  G  I  Q  P  R  Y  L  D  R  R :   E  F  K  D  D  D  *  I  W  K  N  T  Q  H  G  C  H  N  L  F  I  V  *  K  T  C  H  F  D  L  N  I  L  T  Q  N  C  V  K  F  I  Y  V  H  P  L  S  L  P  F  S  V  F  T  Y  S  F  H  L  L  F  L  H  V  I  F  N  K  L  S  N  T  *  F </second_frame>
            <third_frame>   Q  L  V  S  V  S  E  F  L  V  F  L  I  L  M  I  A  K  S  I  A  K  L  N  I  E  R  K  G  R  K  C  *  Q  H  L  H  F  P  A  L  S  L  H  L  S  A  H  L  L  S  F  L  L  F  L  L  L  F  S  L  R  N  F  I  K  H  V  V  G  E  I  R  T  H  V  L  K  L  W  I  L  I  K  T  R  F  F  S  F  S  S  S  L  F  V  F  F  S  M  I  I  V  *  F  Q  L  I  S  Y  G  F  F  L  F  F  F  Y  F  W  G  N  C  D  V  L  G  R  *  *  Q  L  Q  L  G  C  S  V  L  L  L  E  L  E  F  Q  F  F  M  R  P  K  L  I  M  L :   Q  K  E  R  T  L  S  P  A  S  P  A  L  A  L  V  L  :  R  N  A  D  F  A  W  V  L  A  V  *  R  W  S  L  E  G  V  R  Q  K  S  L  G  A  S  I  V  T  V  L  V  V  *  L  A  Q  H  V  K  A  V  A  F  N  L  G  T  L  I  A   : G  N  S  R  T  M  I  R  Y  G  R  I  L  S  M  D  A  T  T  C  L  L  S  R  R  P  V  I  L  T  *  I  Y  *  H  K  I  V  *  N  S  F  M  F  I  P  S  L  C  L  S  Q  F  S  H  I  P  F  T  F  C  S  Y  M  *  S  L  T  S  *  A  I  H  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145993" stop="146088"/>
                    <exon start="146388" stop="146439"/>
                    <exon start="148035" stop="148191"/>
                    <exon start="148342" stop="148363"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTWQVIAITVGVLSVAIGVGIPVFYETQIDNAAKRENTQPCFPCTGTGAQKCRFCMGTGSVTVELGGGETEVSRCINCDGAGGLTCTTCQGSGIQPRYLDRREFKDDD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145699" stop="145992"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKREEMLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNSYPCIKAVDLDQNTVLFFLKFSFCVFLHDYCLISVDLIWVFFIFFLFLGKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="145663" e_stop="145878"/>
            <exon e_start="146005" e_stop="146088"/>
            <exon e_start="146388" e_stop="146439"/>
            <exon e_start="148035" e_stop="148191"/>
            <exon e_start="148342" e_stop="148637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.648" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="145663" e_stop="145878" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="146005" e_stop="146088" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="146388" e_stop="146439" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.945">
            <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="148035" e_stop="148191" e_length="157"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.648">
            <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="148342" e_stop="148637" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145663" stop="145878"/>
              <exon start="146005" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148191"/>
              <exon start="148342" stop="148637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321142" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG : GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT : GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC : AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG : GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCACCTGTGTGTATTGCATTTTAAAAAA</gDNA_template>
            <first_frame> D  D  S  K  I  H  S  *  T  K  H  *  K  K  R  E  E  M  L  T  A  P  S  L  S  R  F  K  S  P  F  I  S  S  P  L  K  L  P  T  L  S  S  S  F  F  T  Q  K  F  H  Q  T  C  R  R  R  N  S  Y  P  C  I  K  A  V  D  L  D  Q  N  T  :  V  I  A  I  T  V  G  V  L  S  V  A  I  G  V  G  I  P  V  F  Y  E  T  Q  I  D  N  A  :  A  K  R  E  N  T  Q  P  C  F  P  C  T  G  T  G  A   : Q  K  C  R  F  C  M  G  T  G  S  V  T  V  E  L  G  G  G  E  T  E  V  S  R  C  I  N  C  D  G  A  G  G  L  T  C  T  T  C  Q  G  S  G  I  Q  P  R  Y  L  D  R  R :   E  F  K  D  D  D  *  I  W  K  N  T  Q  H  G  C  H  N  L  F  I  V  *  K  T  C  H  F  D  L  N  I  L  T  Q  N  C  V  K  F  I  Y  V  H  P  L  S  L  P  F  S  V  F  T  Y  S  F  H  L  L  F  L  H  V  I  F  N  K  L  S  N  T  *  F  Q  Y  Q  L  C  P  I  A  R  C  C  K  *  N  *  A  P  V  C  I  A  F  *  K  </first_frame>
            <second_frame>  M  I  A  K  S  I  A  K  L  N  I  E  R  K  G  R  K  C  *  Q  H  L  H  F  P  A  L  S  L  H  L  S  A  H  L  L  S  F  L  L  F  L  L  L  F  S  L  R  N  F  I  K  H  V  V  G  E  I  R  T  H  V  L  K  L  W  I  L  I  K  T  R :   *  *  Q  L  Q  L  G  C  S  V  L  L  L  E  L  E  F  Q  F  F  M  R  P  K  L  I  M  L :   Q  K  E  R  T  L  S  P  A  S  P  A  L  A  L  V  L  :  R  N  A  D  F  A  W  V  L  A  V  *  R  W  S  L  E  G  V  R  Q  K  S  L  G  A  S  I  V  T  V  L  V  V  *  L  A  Q  H  V  K  A  V  A  F  N  L  G  T  L  I  A   : G  N  S  R  T  M  I  R  Y  G  R  I  L  S  M  D  A  T  T  C  L  L  S  R  R  P  V  I  L  T  *  I  Y  *  H  K  I  V  *  N  S  F  M  F  I  P  S  L  C  L  S  Q  F  S  H  I  P  F  T  F  C  S  Y  M  *  S  L  T  S  *  A  I  H  D  F  N  T  S  F  V  Q  L  L  D  V  V  N  E  I  E  H  L  C  V  L  H  F  K  K </second_frame>
            <third_frame>   *  *  Q  N  P  *  L  N  *  T  L  K  E  K  G  G  N  V  N  S  T  F  T  F  P  L  *  V  S  I  Y  Q  L  T  S  *  A  S  Y  S  F  F  F  F  F  H  S  E  I  S  S  N  M  S  *  A  K  F  V  P  M  Y  *  S  C  G  S  *  S  K  H   : G  D  S  N  Y  S  W  G  A  Q  C  C  Y  W  S  W  N  S  S  F  L  *  D  P  N  *  *  C   : C  K  K  R  E  H  S  A  L  L  P  L  H  W  H  W  C  S :   E  M  Q  I  L  H  G  Y  W  Q  C  D  G  G  A  W  R  G  *  D  R  S  L  S  V  H  Q  L  *  R  C  W  W  F  D  L  H  N  M  S  R  Q  W  H  S  T  S  V  P  *  S  Q  :  G  I  Q  G  R  *  L  D  M  E  E  Y  S  A  W  M  P  Q  L  V  Y  C  L  E  D  L  S  F  *  P  E  Y  I  D  T  K  L  C  K  I  H  L  C  S  S  P  L  S  A  F  L  S  F  H  I  F  L  S  P  S  V  L  T  C  N  L  *  Q  V  E  Q  Y  M  I  S  I  P  A  L  S  N  C  *  M  L  *  M  K  L  S  T  C  V  Y  C  I  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145699" stop="145878"/>
                    <exon start="146005" stop="146088"/>
                    <exon start="146388" stop="146439"/>
                    <exon start="148035" stop="148191"/>
                    <exon start="148342" stop="148363"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKREEMLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNSYPCIKAVDLDQNTVIAITVGVLSVAIGVGIPVFYETQIDNAAKRENTQPCFPCTGTGAQKCRFCMGTGSVTVELGGGETEVSRCINCDGAGGLTCTTCQGSGIQPRYLDRREFKDDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="149084" PGL_stop="152890"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="149084" e_stop="149389"/>
            <exon e_start="149486" e_stop="149610"/>
            <exon e_start="150680" e_stop="150909"/>
            <exon e_start="151582" e_stop="151621"/>
            <exon e_start="151699" e_stop="151790"/>
            <exon e_start="152471" e_stop="152890"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.956" e_score="0.997"/>
          <exon-intron don_prob="0.986" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.485" acc_prob="0.864" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="149084" e_stop="149389" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.956">
            <gDNA_intron_boundary i_start="149390" i_stop="149485" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="149486" e_stop="149610" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.957">
            <gDNA_intron_boundary i_start="149611" i_stop="150679" i_length="1069"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="150680" e_stop="150909" e_length="230"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="150910" i_stop="151581" i_length="672"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="151582" e_stop="151621" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.922">
            <gDNA_intron_boundary i_start="151622" i_stop="151698" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="151699" e_stop="151790" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.485" acc_prob="0.864">
            <gDNA_intron_boundary i_start="151791" i_stop="152470" i_length="680"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="152471" e_stop="152890" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149084" stop="149389"/>
              <exon start="149486" stop="149610"/>
              <exon start="150680" stop="150909"/>
              <exon start="151582" stop="151621"/>
              <exon start="151699" stop="151790"/>
              <exon start="152471" stop="152890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328694" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACAAGTTTTCACTAGGGTTTAAATTCATCGTCTCCCTCGTTCCAACTGGAAAAAAGAACTGTTTCCTCTGTATCTCGTACTGGAACTTGTAAATTTGCATCACTAATTAGAAGTATATTTTGGATTAGAAGTGAAGTGAAGTGAAGGGAGAATCATGCTGTATATAATAGGTCTTGGATTGGGTGATGATAAAGATATAACTTTGAAAGGTCTTGAAGCAGTAAAAAAATGCAGCAAAGTATACATGGAAGCTTACACTTCACTTCTCTCTTTTGGGCTTTCTCCAAATGGTCTTTCCAATCTG : GAAAATCTTTATGGAAGATCAATAACACTTGCAGATAGGGAAATGGTAGAGGAGAAAGCTGATGAGATCCTTAATGAAGCTAAAGCTTCTGACGTGGCTTTTCTAGTTGTTGGTGATCCTTTTGG : AGCCACAACCCACACTGATATTGTCGTCCGTGCGAAGAAGTTGGGTGTGGATGTTAAGGTGATACACAATGCATCTGTGATGAATGCTGTTGGAGTGTGTGGCTTACAGCTCTACCATTATGGAGAGACAGTGTCCATACCGTTCTTCACTGAGACCTGGAGGCCGGATAGTTTCTATGAGAAGATTAGAGAAAACCGAAAGCTTGGACTACACACACTCTGCTTGTTAG : ATATACGAGTGAAAGAACCAACCATCGAGTCTCTTTGCAG : AGGAAAGAAGCAGTATGAACCTCCCAGATTTATGACAGTTAACACAGCAATTGAGCAGCTCTTAGAGGTTGAAGAAGCCCGTGGAGAATTTG : TATACGGTGAAAATACAATCTGTGTTGGTTTTGCACGGCTGGGGAGTGAAGACCAAAAGGTGGTTGCTGGTTCAATGAAGCAACTTCTAACAGTCGACTTTGGGGCGCCATTGCATTGCTTAGTCATAGTTGGCAAAACACACCCTGTTGAAGAAGAAATGCTGGAATTTTATGGGCTTTAGAAAACGTATCACAGGATTGCAATAGCAAATACTGTATTCATGTGTTGCCTTTTGTACCATTCCATTCTTTTTGGTGACTATTTATTTAGGCATTAAGATGACTATGATGTATTTTTTGCTTTGTAAACTCTTCCCATCTTCAAGTGATTTTGACATATTTTCAAGAATTCTTAAATTTAAGATATTGTTGGTTATTTTTGTAATCTTTCACTAGTATTCTCAATACATTATATCAAAT</gDNA_template>
            <first_frame> L  Q  V  F  T  R  V  *  I  H  R  L  P  R  S  N  W  K  K  E  L  F  P  L  Y  L  V  L  E  L  V  N  L  H  H  *  L  E  V  Y  F  G  L  E  V  K  *  S  E  G  R  I  M  L  Y  I  I  G  L  G  L  G  D  D  K  D  I  T  L  K  G  L  E  A  V  K  K  C  S  K  V  Y  M  E  A  Y  T  S  L  L  S  F  G  L  S  P  N  G  L  S  N  L  :  E  N  L  Y  G  R  S  I  T  L  A  D  R  E  M  V  E  E  K  A  D  E  I  L  N  E  A  K  A  S  D  V  A  F  L  V  V  G  D  P  F  G :   A  T  T  H  T  D  I  V  V  R  A  K  K  L  G  V  D  V  K  V  I  H  N  A  S  V  M  N  A  V  G  V  C  G  L  Q  L  Y  H  Y  G  E  T  V  S  I  P  F  F  T  E  T  W  R  P  D  S  F  Y  E  K  I  R  E  N  R  K  L  G  L  H  T  L  C  L  L   : D  I  R  V  K  E  P  T  I  E  S  L  C  R :   G  K  K  Q  Y  E  P  P  R  F  M  T  V  N  T  A  I  E  Q  L  L  E  V  E  E  A  R  G  E  F   : V  Y  G  E  N  T  I  C  V  G  F  A  R  L  G  S  E  D  Q  K  V  V  A  G  S  M  K  Q  L  L  T  V  D  F  G  A  P  L  H  C  L  V  I  V  G  K  T  H  P  V  E  E  E  M  L  E  F  Y  G  L  *  K  T  Y  H  R  I  A  I  A  N  T  V  F  M  C  C  L  L  Y  H  S  I  L  F  G  D  Y  L  F  R  H  *  D  D  Y  D  V  F  F  A  L  *  T  L  P  I  F  K  *  F  *  H  I  F  K  N  S  *  I  *  D  I  V  G  Y  F  C  N  L  S  L  V  F  S  I  H  Y  I  K  </first_frame>
            <second_frame>  Y  K  F  S  L  G  F  K  F  I  V  S  L  V  P  T  G  K  K  N  C  F  L  C  I  S  Y  W  N  L  *  I  C  I  T  N  *  K  Y  I  L  D  *  K  *  S  E  V  K  G  E  S  C  C  I  *  *  V  L  D  W  V  M  I  K  I  *  L  *  K  V  L  K  Q  *  K  N  A  A  K  Y  T  W  K  L  T  L  H  F  S  L  L  G  F  L  Q  M  V  F  P  I  W :   K  I  F  M  E  D  Q  *  H  L  Q  I  G  K  W  *  R  R  K  L  M  R  S  L  M  K  L  K  L  L  T  W  L  F  *  L  L  V  I  L  L   : E  P  Q  P  T  L  I  L  S  S  V  R  R  S  W  V  W  M  L  R  *  Y  T  M  H  L  *  *  M  L  L  E  C  V  A  Y  S  S  T  I  M  E  R  Q  C  P  Y  R  S  S  L  R  P  G  G  R  I  V  S  M  R  R  L  E  K  T  E  S  L  D  Y  T  H  S  A  C  *  :  I  Y  E  *  K  N  Q  P  S  S  L  F  A   : E  E  R  S  S  M  N  L  P  D  L  *  Q  L  T  Q  Q  L  S  S  S  *  R  L  K  K  P  V  E  N  L  :  Y  T  V  K  I  Q  S  V  L  V  L  H  G  W  G  V  K  T  K  R  W  L  L  V  Q  *  S  N  F  *  Q  S  T  L  G  R  H  C  I  A  *  S  *  L  A  K  H  T  L  L  K  K  K  C  W  N  F  M  G  F  R  K  R  I  T  G  L  Q  *  Q  I  L  Y  S  C  V  A  F  C  T  I  P  F  F  L  V  T  I  Y  L  G  I  K  M  T  M  M  Y  F  L  L  C  K  L  F  P  S  S  S  D  F  D  I  F  S  R  I  L  K  F  K  I  L  L  V  I  F  V  I  F  H  *  Y  S  Q  Y  I  I  S  N </second_frame>
            <third_frame>   T  S  F  H  *  G  L  N  S  S  S  P  S  F  Q  L  E  K  R  T  V  S  S  V  S  R  T  G  T  C  K  F  A  S  L  I  R  S  I  F  W  I  R  S  E  V  K  *  R  E  N  H  A  V  Y  N  R  S  W  I  G  *  *  *  R  Y  N  F  E  R  S  *  S  S  K  K  M  Q  Q  S  I  H  G  S  L  H  F  T  S  L  F  W  A  F  S  K  W  S  F  Q  S   : G  K  S  L  W  K  I  N  N  T  C  R  *  G  N  G  R  G  E  S  *  *  D  P  *  *  S  *  S  F  *  R  G  F  S  S  C  W  *  S  F  W  :  S  H  N  P  H  *  Y  C  R  P  C  E  E  V  G  C  G  C  *  G  D  T  Q  C  I  C  D  E  C  C  W  S  V  W  L  T  A  L  P  L  W  R  D  S  V  H  T  V  L  H  *  D  L  E  A  G  *  F  L  *  E  D  *  R  K  P  K  A  W  T  T  H  T  L  L  V  R :   Y  T  S  E  R  T  N  H  R  V  S  L  Q  :  R  K  E  A  V  *  T  S  Q  I  Y  D  S  *  H  S  N  *  A  A  L  R  G  *  R  S  P  W  R  I  C :   I  R  *  K  Y  N  L  C  W  F  C  T  A  G  E  *  R  P  K  G  G  C  W  F  N  E  A  T  S  N  S  R  L  W  G  A  I  A  L  L  S  H  S  W  Q  N  T  P  C  *  R  R  N  A  G  I  L  W  A  L  E  N  V  S  Q  D  C  N  S  K  Y  C  I  H  V  L  P  F  V  P  F  H  S  F  W  *  L  F  I  *  A  L  R  *  L  *  C  I  F  C  F  V  N  S  S  H  L  Q  V  I  L  T  Y  F  Q  E  F  L  N  L  R  Y  C  W  L  F  L  *  S  F  T  S  I  L  N  T  L  Y  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149225" stop="149389"/>
                    <exon start="149486" stop="149610"/>
                    <exon start="150680" stop="150909"/>
                    <exon start="151582" stop="151621"/>
                    <exon start="151699" stop="151790"/>
                    <exon start="152471" stop="152652"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEGRIMLYIIGLGLGDDKDITLKGLEAVKKCSKVYMEAYTSLLSFGLSPNGLSNLENLYGRSITLADREMVEEKADEILNEAKASDVAFLVVGDPFGATTHTDIVVRAKKLGVDVKVIHNASVMNAVGVCGLQLYHYGETVSIPFFTETWRPDSFYEKIRENRKLGLHTLCLLDIRVKEPTIESLCRGKKQYEPPRFMTVNTAIEQLLEVEEARGEFVYGENTICVGFARLGSEDQKVVAGSMKQLLTVDFGAPLHCLVIVGKTHPVEEEMLEFYGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 36 chains have been computed
$ 
$ memory statistics:
$ 56768 bytes spliced alignments in total
$ 28 spliced alignments have been stored
$ 2027 bytes was the average size of a spliced alignment
$ 34904 bytes predicted gene locations in total
$ 23 predicted gene locations have been stored
$ 1517 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 39 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-17 21:50:06
-->
