<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 15:02:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324453" ref_strand="+" ref_description="SGN-U324453        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT5G66850.1 | Symbol: None | protein kinase family protein, contains Pfam domain, PF00069: Protein kinase domain; identical to cDNA MAP3K gamma protein kinase GI:2315152 | chr5:26712833-26716550 REVERSE | Aliases: MUD21.11, MUD21_11 (evalue: 7e-36, score=147) genbank/nr: MAP(evalue: 5e-34, score=147)">
      <seq>ctgtgttgcgcaaagatgccaatccagagcttgccttagctgttgatatatggagcctgggctgtactgttattgagatgtttactggacagcccccttggggcgaacttagttgggtgcaagcaatgttcggtgtcctgaacaaatcaccacctataccagaaaaattatcatcagaaggaaaagatttccttcagtgctgctttcggaggaaacctgcagataggccatcagctatgatgctacttgaacatgcttttttacgtagtactagttcccttgagcatagtatcaatgttgctggttgctcagaggattctccggggaagaaattccatgataccctgagtcctaagaacccaatgaaccacaaaaaggaacaaaaaccactattaccaggaacatctggcaggcaagcaaaatcaccatgtagcagtgaaacttgccggcaaactcaacctgaaacctgtgaatatggagcaacttctcaccattctccacgttctgcacttgaagtctttccctgtattacttcaatggagctgaactcgagttcacgtgtagccagcccctcaagcgttcctagtagctttcgcctgggacctgaaaacagaagtccttatagaatcatagggaaggaaattccaaacctctgtataagatcataaatgaatggagaggagggaaattcatgtacagatcaggagaattagatacagaaaacttcagttggatgattagtcaaaatgttgccatatgtaatattcatgttgtatttgaaggcatacatatctttataacatattcatgaagaattgaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="3702" stop="1763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3402" g_stop="3287" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3286" i_stop="3062" i_length="225">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3061" g_stop="2840" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="338" r_length="222" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2839" i_stop="2713" i_length="127">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2712" g_stop="2615" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="436" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2614" i_stop="2449" i_length="166">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2448" g_stop="2064" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="821" r_length="385" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="822" polyA_stop="831"/>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-U324453" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3402" e_stop="3287"/>
          <exon e_start="3061" e_stop="2840"/>
          <exon e_start="2712" e_stop="2615"/>
          <exon e_start="2448" e_stop="2064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTGCGCAAAGATGCCAATCCAGAGCTTGCCTTAGCTGTTGATATATGGAGCCTGGGCTGTACTGTTATTGAGATGTTTACTGGACAGCCCCCTTGGGGCGAACTTAGTTGGGTAAGTGTTTGAAACATCTCATTTTGAGAACAATGTAATCGCATTACAAGCTTAAATATATTTGTGAGCTTTTAGTTGTCAATATAGCATCATAGCTTTTTAATATATGAGCAAGGCTGACTGGTCGGCTTAATCTCAATAAAGCCAGAGCTATGTTCTTACTTTTCAGGCGTTCTCGAATTGGTTTCTGTGATTGTCTAAATGTTCATGGTTTGGCTTTATTAGGTGCAAGCAATGTTCGGTGTCTTGAACAAATCACCACCTATACCAGAAAAATTATCATCAGAAGGAAAGGATTTCCTTCAGTGCTGCTTTCGGAGGAAACCTGCAGATAGGCCATCAGCTATGACGCTACTTGAACATGCTTTTTTACGTAGTACTAGTTCCCTTGAGCATAGTATCAATGTTGCTGGTTGCTCAGAGGATTCTCCGGGGAAGAAATTCCATGTGAGTGGTACATGCTGCTAGCCTGCTACTGATGTGACATTAAGGGTTAACGTCACTGTATTATTTGTGAGATTCTCTAAATTTTGTTTTCCAAATGATTTTGAACTCTGAATTCATTACATTTCAGGATACCCTGAGTCCTAAGAACCCAATCAACCCCAAAAAGGAACAAAAACCACTGTTACCAGGAACATCTGGCAGGCAAGCAAAATCACCATGTAGCAGGTAAAAACTGTCTTTGAGTTTTTCATGTTATAAATACCACACACTTTATTCTGTGAGATTATTTTTTCGCGTATTAGTATCTACAATTGCAGCTAGATACTATATCTCACGTTATGCCATTAACTGTCACGTCCATCTTATGCAAGTTAAACTATGTCTCTTCCAGTGAAACTTGCCGGCAAACTCAACCTGAAACCTGTGAATATGGAGCAACTTCTCACCATTCTCCACGTTCTGCACTTGAAGTCTTTCCCTGTATTACTTCAATGGAGCTGAACTCGAGTTCACGTGCAGCCAGCCCCTCAAGCGTTCCTAGTAGCTTTCGCCTGGGACCTGAAAACAGAAGTCCTTATAGAATCATAGGGAAGGAAATTCCAAACCTCTGTATAAGATCATAAATGAATGGAGAGGAGGGAAATTCATGTACAGATCAGGAGAATTAGATACAGAAAACTTCAGTTGGATGATTAGTCAAAATGTTGCCATATGTAATATTCATGTTGTATTTGAAGGCATACATATCTTTATAACATATTCATGAAGAATTGAAG</genome_strand>
        <mrna_strand>CTGTGTTGCGCAAAGATGCCAATCCAGAGCTTGCCTTAGCTGTTGATATATGGAGCCTGGGCTGTACTGTTATTGAGATGTTTACTGGACAGCCCCCTTGGGGCGAACTTAGTTGG.................................................................................................................................................................................................................................GTGCAAGCAATGTTCGGTGTCCTGAACAAATCACCACCTATACCAGAAAAATTATCATCAGAAGGAAAAGATTTCCTTCAGTGCTGCTTTCGGAGGAAACCTGCAGATAGGCCATCAGCTATGATGCTACTTGAACATGCTTTTTTACGTAGTACTAGTTCCCTTGAGCATAGTATCAATGTTGCTGGTTGCTCAGAGGATTCTCCGGGGAAGAAATTCCAT...............................................................................................................................GATACCCTGAGTCCTAAGAACCCAATGAACCACAAAAAGGAACAAAAACCACTATTACCAGGAACATCTGGCAGGCAAGCAAAATCACCATGTAGCAG......................................................................................................................................................................TGAAACTTGCCGGCAAACTCAACCTGAAACCTGTGAATATGGAGCAACTTCTCACCATTCTCCACGTTCTGCACTTGAAGTCTTTCCCTGTATTACTTCAATGGAGCTGAACTCGAGTTCACGTGTAGCCAGCCCCTCAAGCGTTCCTAGTAGCTTTCGCCTGGGACCTGAAAACAGAAGTCCTTATAGAATCATAGGGAAGGAAATTCCAAACCTCTGTATAAGATCATAAATGAATGGAGAGGAGGGAAATTCATGTACAGATCAGGAGAATTAGATACAGAAAACTTCAGTTGGATGATTAGTCAAAATGTTGCCATATGTAATATTCATGTTGTATTTGAAGGCATACATATCTTTATAACATATTCATGAAGAATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328377" ref_strand="+" ref_description="SGN-U328377        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|50918975|ref|XP_469884.1| putative protein kinase [Oryza sativa (japonica cultivar-group)] >gi|17027283|gb|AAL34137.1| putative protein kinase [Oryza sativa (japonica cultivar-group)] (evalue: 9e-11, score=69.7)">
      <seq>tcctctgctgtgccactgccgttgccgctcccggagctcaattctctgcctaaacagaactcggttcactctaatttgccggttagagttgacagggagcttttaagtcctcctcttgccagggaaacttttgatcgaactccagctgaggtgaaaagttctcagcatccaagatcatctactccaacttatcggcgtaggggtttccctcaggatctgaacgccgagggtgttgaattcaggttgaacgttcctgctagaagtgccccaagtagtggttttacaagccctgtccgaagcccaaaaaggtttagcacacaggacctttttcatcatccattgcatcaggcctcatcatcaccttcagaggcttacgctttccaactttcacccacaagggttataaatagcgctgatcattctccagtgagtagcccaattttaccaagttcagctaacagaatcaggaacagcaaaagtgttgctttgcattcacatcataaatctcttccggaaagttctctaggttggaatgaagctaacaacaacaatgtgcatccactaccccttccaccaggagttccacgacaaccagaattatgtaccatgcacagcaatatggataaaccttgtgtatcaccacaaagggtcaatggctaaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="6741" stop="4764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6441" g_stop="6320" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6319" i_stop="5607" i_length="713">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.072" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5606" g_stop="5063" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="665" r_length="543" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-U328377" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6441" e_stop="6320"/>
          <exon e_start="5606" e_stop="5063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTGCTGTGCCACTGCCGTTGCCGCTCCCGGAGCTCAATTCTCTGCCTAAACAGAACTCGGTTCACTCTAATTTGCCGGTTAGAGTTGACAGGGAGCTTTTAAGTCCTCCTCTTGCCAGGTTAGTGAACCCATTGTTCAGAATTTTGTACTACGTCTTAGCTTTCGTTTTACTCTGTTTCGAAATGAATGACTCTTTTCATCTTTGATTGTAACTGTACATTAAATAACATGTTGATATATTTTGTGTTTCTTTAGTTTAAGATTACGAGATTTAAAAATAGATTTTACTTTGTTAAATCTTGTGTCAAGTTAAAATCAGTCCGACAAATTGACATGGAGTGATTTATTTATCGAACTCTTTAGTTTTTTCTTACATGTTTGTCTTATGCTCTAAGTAAAAACGCTACCTTTCTGAGTGAAGTACTGTTTAGCCGATTCATACTGGTTTGGGATTGAGGTGTAGTTATTTTCGGTTTGATGATGAAAACTTTCCACCTTAGGTATGTAAAGGGATTTAGTAGTAGTAGAAGGTAGTTGGTTCGAATTTGAAGCAGTTTTTGGGTGGATTGACTGCAGTAACATTTTATAGGTCATTTTACCATAAAAGAACCATTGTTTTTCCTTTTTTGGGTTGTGAATTAACTTCAGTAACCTTTATAAGGTCCACCGTAAAGGTAGGTTCGGAATTGTGAAAGAGCATGTGGTTTATAGCTGTTTCAAATGATGATTTATAGTGTGCTACTTTGTTTTTGGGTAAAAATGTTCCATTAGCTATGATGATTGTAAGGACAAAAACTGAACGCGGAAATGTTAACCTGTTGCAAGTTGCAGGGAAACTTTTGATCGAACTCCAGCTGAGGTGAAAAGTTCTCAGCATCCAAGGTCATCTACTCCAACTTATCGGCGTAGGGGTTTCCCTCAGGATCTGAACGCCGAGGGTGTTGAATTCAGGTTGAACGTTCCTGCTAGAAGTGCCCCAAGTAGTGGTTTTACAAGCCCTGTCCGAAGCCCAAAAAGGTTTAGCACGCAGGACCTTTTTCATCATCCATTGCATCAGGCCTCATCATCACCTTCAGAGGCTTACGCTTTCCAACTTTCACCCACAAGGGTTATAAATAGCGCTGATCATTCTCCAGTGAGTAGCCCAATTTTACCAAGTTCAGCTAACAGAATCAGGAACAGCAAAAGTGTTGCTTTGCATTCACATCATAAATCTCTTCCGGAAAGTTCTCTAGGTTGGAATGAAGCTAACAACAACAATGTGCATCCACTACCCCTTCCACCAGGAGTTCCACGACAACCAGAATTATGTACCATGCACAGCAATATGGATAAACCTTGTGTATCACCAACAAAGGGTCAATGGCTAAAGGGG</genome_strand>
        <mrna_strand>TCCTCTGCTGTGCCACTGCCGTTGCCGCTCCCGGAGCTCAATTCTCTGCCTAAACAGAACTCGGTTCACTCTAATTTGCCGGTTAGAGTTGACAGGGAGCTTTTAAGTCCTCCTCTTGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACTTTTGATCGAACTCCAGCTGAGGTGAAAAGTTCTCAGCATCCAAGATCATCTACTCCAACTTATCGGCGTAGGGGTTTCCCTCAGGATCTGAACGCCGAGGGTGTTGAATTCAGGTTGAACGTTCCTGCTAGAAGTGCCCCAAGTAGTGGTTTTACAAGCCCTGTCCGAAGCCCAAAAAGGTTTAGCACACAGGACCTTTTTCATCATCCATTGCATCAGGCCTCATCATCACCTTCAGAGGCTTACGCTTTCCAACTTTCACCCACAAGGGTTATAAATAGCGCTGATCATTCTCCAGTGAGTAGCCCAATTTTACCAAGTTCAGCTAACAGAATCAGGAACAGCAAAAGTGTTGCTTTGCATTCACATCATAAATCTCTTCCGGAAAGTTCTCTAGGTTGGAATGAAGCTAACAACAACAATGTGCATCCACTACCCCTTCCACCAGGAGTTCCACGACAACCAGAATTATGTACCATGCACAGCAATATGGATAAACCTTGTGTATCACC-ACAAAGGGTCAATGGCTAAAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328325" ref_strand="+" ref_description="SGN-U328325        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam PF05329: Protein of unknown function (DUF731) | chr1:17563795-17565323 REVERSE | Aliases: T2E6.21(evalue: 3e-36, score=149) genbank/nr: gi|30694139|ref|NP_175203.2| expressed protein [Arabidopsis thaliana] gi|5668791|gb|AAD46017.1| F16N3.2 [Arabidopsis thaliana] gi|26453224|dbj|BAC43686.1| unknown protein [Arabidopsis thaliana] gi|28950819|gb|AAO63333.1| At1g47720 [Arabidopsis thaliana](evalue: 2e-34, score=149)">
      <seq>ctaaaaacacccgccgaaaaaaataagctgccacatttccatggcagcagccgcctgttcctccgccgtattcaaacgggcagcttcaaccgccgcccaaattctccgacaccagcacttctcctcagcggcggcggcagcggagattcaccggccgggggatttctactgtgacgatagtgaaggcgaagaaagtgcagtgtatcagcataccctcaaattccaacgcccatcaacgataacacaacaccagcttctccataactccgtcagtctcataggaaaaattgattacccgttcaaaagagttaacactaaaaacggctcttttggggttcatactttactcagtgtctccggttcttctcaatcccgtccatcttttaaagttatgttgaagatgtgggatgaaatggcggaagtgtcaatggagcatttgaaatcaaatgacctggtatatgtttggggtcatttgggatcatacatcaagactgatgagaatggtaaacatcagatgagataccaggtagatgtgaaggaaataaatttcgtgactccagatgttcaagccttagcaaccccagaatttcagaagaaagaatcaagaggtgaagatgaattggagaattacaggaaccgtatccaattgtggcaaattttcttcgctagcccttttgaatggatggacttcaggaagagtaaagtcaatcctaaataccctgactttaagaacagagatactggtgaagttctctggctcaggacagaatgatccaccgtggataaaaagacagttggatatcctagattcaagattttctaagaacaattaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="10754" stop="14361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11054" g_stop="11440" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11441" i_stop="11527" i_length="87">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11528" g_stop="11666" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="526" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11667" i_stop="12941" i_length="1275">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12942" g_stop="13023" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="608" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13024" i_stop="13839" i_length="816">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13840" g_stop="14064" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="834" r_length="226" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-U328325" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11054" e_stop="11440"/>
          <exon e_start="11528" e_stop="11666"/>
          <exon e_start="12942" e_stop="13023"/>
          <exon e_start="13840" e_stop="14064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAACACCCGCCGAAAAAAATAAGCTGCCACATTTCCATGGCAGCAGCCGCCTGTTCCTCCGCCGTATTCAAACGGGCAGCTTCAACCGCCGCCCAAATTCTCCGACACCAGCACTTCTCCTCAGCGGCGGCGGCAGCGGAGATTCACCGGCCGGGCGATTTCTACTGTGACGATAGTGAAGGCGAAGAAAGTGCAGTGTATCAGCACACCCTCAAATTTCAACGCCCATCAACGATAAAACAACTTCAGCTTCTCCATAACTCCGTCAGTCTCATAGGAAAAATTGATTACCCATTCAAAAGAGTTAACACTAAAAACGGCTCTTTTGGGGTTCATACTTTACTCAGTGTCTCCGGTTCTTCTCAATCCCGTCCATCTTTTAAGTGAGACTCTAATTTTACTACTATTTGCAAATTAATTACTATAACTATTAGTCGAGTGATCGTCTGAGAAATTTTAACACTCTGCAGAGTTATGTTGAAGATGTGGGATGAAATGGCGGAAGTGTCAATGGAGCATTTGAAATCAAATGACCTGGTATATGTTTGGGGTCATTTGGGATCATACATCAAGACTGATGAGAATGGTAAACATAAGATGAGATACCAGGTTTGTAACCACAAAAATAATACTGGTAAATAGAATAAAAATGTCATCTTTGATATAGGTTAACAGCTTTGATACAAATTTGTCTAGTATTTGTTATAGGTTAACTACGATGTAGGGAATCTTAGTAGCTCAGTTAGTTGGTTGTCTATCTGAACTTTACCTTCTTGGTGAAGGTTCAATTTTCCACCTTGTAATTTGTCTACAACATGCAATGGTTATTGTGAATTTGGCTGGTTTTTCGTAAGGGCCTGTGGGATAGAATTGGTGAAAGAGACGGGTTCAGTTGGGATTATTGGACCGAGTAAAATGTTGGAGAGTGTTATCTGGGATCCAGGCCTAAATAGCAATTGGTTAAAAAGGATTGTGTGTTAGAAAGAAGAGTTCTATGCCTATTATGTTGAAGCTTTGGCTCAGTCTGTTACTGGCTACCTATTTCCATGTTATGCCCATTAGTATTGTTCATTATTAGCTCATTGCTCCAATTCTCAGTTGTAATTTTGATTCGGTAGATATAATATACATTAGTGTTGTATTGAGAAATTTGGATTGTTAGTAATGACCTAGGGATGTTGGTTATCCAGCAAGCGTAGGACTGCCCATTGTGTTATGATCTAGGATTATGACAACTTTCAGTTATTTGTGAAAAAGCTCGACTGAATTGCAATAAGGAGGACAAGAGTATATGGAAGTACTTGGATACAAAATTGCAAGTACCTTTCTTTTGTTTAACGAACTAAGTGACGTTTTTGGTTGGGACACCGAGGCAAGGATCATCCTTTAAAAAATCATTCCAATTCAGCTAATTATTCGACTTTGGATGCAAAAGATTTGTAGATGGAGCTAACCATTTCAATAAGATATTGTTCCATTTACTCTCTTTGACATAGCACACAATTTTATCTTTCAGAAGTGATTAATTAGAATTGCATCTGTCATTTGGTGTTTAGGTTTCCTATATGAGTTGCCTTTTTTTTTTCCGGGGTGATTGGGGGATATGATCAGCTTTGAATATCTCTTAAAAGACAAAGGCTAATAGAGGAAGTTGTGACATAAGTGCACCTATTCTTTAACAGTTAAATTTTCTCCTGGATCTTTAAAGAATAAAAAGGATGGGAAATACCCTCAAGAAAACATGATCCCGCATTAGATGTGTTTTTGTAAATTTGAGATCCTGTGCTGAACAAAATGCTTTTTCTTTTGCCATATTTTTATGTAGCTTGTGCTGCACAAAAATGTTTCCGTTTCATGTTTTCATGTACTGATTTTTTTGTGAAGGTAGATGTGAAGGAAATAAATTTCGTGACTCCAGATGTTCAAGCCTTAGCGACCCCAGAATTTCAGAAGAAAGAATCAAGAGGTATATGTTGCCTTTCTGAGCATTTTTTATTAGTTATGATGTTCATAGATCGTAACCAATTGGCAGACATTTTCTATAGCGGAGTGCAATGGGCCTAAATAGAGTGTTGTACATGCAGCATGTCTGAATAATTGAAAATTAGCAAACAGTAGGAGGATAACTTCAACTAAATGAAGCTTCAGAACTAATAGAAATCAAATATCAACTTTTGACACATTCACCATAGCCTAATTTTAAAATATCCAAGTATGATTTTACTTAGCTTAGGAAAATGCACCTTATTGTAAGATACTCGTTGTCGCTTCCACCTTTCATTCTTCGAGTTAGAATGGATGGGTGGGAATTTCTGTCCTGACAACAGAAAGAACAAACAACTAAAGAGACTATAAAATGCACACATAATCCAGGTCTTAGTGATCCTTTTTTTTTAGTTCTCTTGCCCACAATGACCATTACATTTGGTTGATTTTTGGAACTAATGGGATATTGAGACATGAACTGAAATACGAACTTGCTCAGACATTCCTGCTAACAATTTTGCTGCTTTGAACGTTGTGTTGAAACATTTGACACTGAATGCTTGATTCTCCTCCTGTCCTTCGAAGTTCAATCAAGACTTTATCTAGAGCTACTCACAGGCGGAGACTTTGATGTGCCAAAACTTTTTTTAGCGCCAAACCAAAAAGCGTGATTACCCAGTAATCCAATTAAATCAAGCCTTAGAGAGATTGAAATCTGTTGATCCTACATACATATATATATATACTTCTTCAATGTCGTTAACTCATTTCTAGATACATTTACTTGCATTCTCAGGTGAAGATGAATTGGAGAACTACAGGAACCGGATCCAATTGTGGCAAATTTTCTTCGCTAGCCCTTTTGAATGGATGGACTTCAGGAAGAGTAAAGTCAATCCTAAATACCCCGACTTTAAGAACAGAGATACTGGTGAAGTTCTCTGGCTCAGGACAG-ATGATCCACCATGGATAAAAAGACAGTTGGATATCCTAGATTCAAGATTTTCTTACGAAAGTTTCT</genome_strand>
        <mrna_strand>CTAAAAACACCCGCCGAAAAAAATAAGCTGCCACATTTCCATGGCAGCAGCCGCCTGTTCCTCCGCCGTATTCAAACGGGCAGCTTCAACCGCCGCCCAAATTCTCCGACACCAGCACTTCTCCTCAGCGGCGGCGGCAGCGGAGATTCACCGGCCGGGGGATTTCTACTGTGACGATAGTGAAGGCGAAGAAAGTGCAGTGTATCAGCATACCCTCAAATTCCAACGCCCATCAACGATAACACAACACCAGCTTCTCCATAACTCCGTCAGTCTCATAGGAAAAATTGATTACCCGTTCAAAAGAGTTAACACTAAAAACGGCTCTTTTGGGGTTCATACTTTACTCAGTGTCTCCGGTTCTTCTCAATCCCGTCCATCTTTTAA.......................................................................................AGTTATGTTGAAGATGTGGGATGAAATGGCGGAAGTGTCAATGGAGCATTTGAAATCAAATGACCTGGTATATGTTTGGGGTCATTTGGGATCATACATCAAGACTGATGAGAATGGTAAACATCAGATGAGATACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGTGAAGGAAATAAATTTCGTGACTCCAGATGTTCAAGCCTTAGCAACCCCAGAATTTCAGAAGAAAGAATCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGATGAATTGGAGAATTACAGGAACCGTATCCAATTGTGGCAAATTTTCTTCGCTAGCCCTTTTGAATGGATGGACTTCAGGAAGAGTAAAGTCAATCCTAAATACCCTGACTTTAAGAACAGAGATACTGGTGAAGTTCTCTGGCTCAGGACAGAATGATCCACCGTGGATAAAAAGACAGTTGGATATCCTAGATTCAAGATTTTCTAAGAACAATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324345" ref_strand="+" ref_description="SGN-U324345        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT4G33300.1 | Symbol: ADR1-L1 | disease resistance protein (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. | chr4:16051061-16056530 REVERSE | Aliases: F17M5.60, F17M5_60, ADR1-L1, ADR1-LIKE 1 (evalue: 2e-60, score=229) genbank/nr: gi|30689664|ref|NP_195056.2| disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana](evalue: 2e-58, score=229)">
      <seq>gagggaaaaaacagttcgaagtctccaaacatggcggtgacggactttttcgccggcgagattaccaccgaactcataaaatacctgctgttgatagttaaaaaatccactttatgccgttcaagcgcagagaatctcattgacaatatcaatggtctccttccaatcatccaagaaatcaaacaaaccggtgttgaacttccacagatacggcaaactcagctcgacgatttctccaaacttctccgagatggctacgaactcgccggaaaagttctccactccggccgttggaatatgtacaggaacctacagttggctaggaaaatggagaggttagagaaaagagtagcgaggttcatgcaagtgacaatgcaagctcatgtactagctgatgttcatcatgttaggtttaatatggagcagagatttgatgtgcttgagcataggcttaaagctataaaaatcggagttgatgatagaagtggtggaggaggagggtgtttaggggaagctgtgaaaagaatggaagaagatgagaaatggtttgaggatagttttgtaaatttaggtgctgggattgaattggggaagaggaaggtgaaggagatgctgatgggtgaacaagataggggtgtgtttgagatttgtggaattgggggtagtggcaaaactaccttggctaaagagatttgtaaagatgatcaagttaaaagttatttcaaggacaagattttctttttcactgtctctcaatctccaaatgtggagcaattaaggaaaatgatttgggaaaagatatcagggtgtaatctccatggttatggatacggggagatgtttccccagtggaacctacagtaccaatggaatacgaaatctgcatccccggtactcttgattcttgatgatgtgtggtctgcatctgttctagaaccactagttttcaagatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="19515" stop="21605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19808" g_stop="20112" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20113" i_stop="20225" i_length="113">
            <donor d_prob="0.219" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20226" g_stop="20635" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="715" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20636" i_stop="21064" i_length="429">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21065" g_stop="21305" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="956" r_length="241" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-U324345" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>956</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19808" e_stop="20112"/>
          <exon e_start="20226" e_stop="20635"/>
          <exon e_start="21065" e_stop="21305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGGAAAACAGTTTGAAGTCTCCAAACATGGCGGTGACGGACTTTTTCGCCGGCGAGATTACCACCGAACTCATAAAATACCTGCTGTTGATAGTTAAAAAATCCACTTTATGCCGTTCAAGCGCAGAGAATCTCATTGACAATATCAATGGTCTCCTTCCAATCATCCAAGAAATCAAACAAACCGGTGTTGAACTTCCACAGATACGGCAAACTCAGCTCGACGATTTCTCCAAACTTCTCCGAGATGGCTACGAACTCGCCGGAAAAGTTCTCCACTCCGGCCGTTGGAACATGTACAGGTGTCACCTTCTCATTCGACTCTAATTTCAATGAATTGAACTTCTTCCTGCTCAAATTAGGGTTATTGTTAGAAATTAGTACTTAAATTTTTATTATGCCTTATTAATAACAGGAACCTACAGTTGGCTAGGAAAATGGAGAGGTTAGAGAAAAGAGTAGCGAGGTTCATGCAAGTGACAATGCAAGCTCATGTACTAGCTGATGTTCATCATGTTAGGTTTAATATGGAGCAGAGATTTGATGTGCTTGAGCATAGGCTTAAAGCTATAAAAATCGGAGTTGATGATAGAAGTGGTGGAGGAGGAGGGTGTTTAGGGGAAGCTGTGAAAAGAATGGAAGAAGATGAGAAATGGTTTGAGGATAGTTTTGTAAATTTAGGTGCTGGGATTGAATTGGGGAAGAGGAAGGTGAAGGAGATGCTGATGGGTGAACAAGATAGGGGTGTGTTTGAGATTTGTGGAATTGGGGGTAGTGGCAAAACTACCTTGGCTAAAGAGATTTGTAAAGATGATCAAGTTAAAAGTAAGTAATTAATCCCAGAAAAGTTTCTCATGTAGAGTATTTTAGCTTTTTGCGGGGTTGAATTCTCAAATGGTTACTCAACTTATAGTTATTATCTCAGAAAATCTCTTTTCGTTCTTGATTCTGATGCAAAGAAAGTCACTTTGTTAGATATAAACTATTAGTTGAGTGACCATCTGTGAAATCAACTCCTGTGTTGCGTTGCTGATGATCGAGTTTTTTGTTTTTACTCTTCTGTTGCGGATGAAACAGTGGATAAAAGTTGAAAACTTTATTAGCTATTATCTCTATTTTATCAGTTGAATTCTAATAGAGATCAATTTTGCATGTAAATGACTCATAAAAAGTTTTGATTGGAGTACAGTTTAAATTGGTCTTAAAAACCTTTTCTTTAAATAATGGTATGGTATTTGGGCCATGTTTTTCCAGGTTATTTCAAGGACAAGATTTTCTTTTTCACTGTCTCTCAATCTCCAAATGTGGAGCAATTAAGGAAAATGATTTGGGAAAAGATATCAGGGTGTAATCTCCATGGTTATGGATACGGGGAGATGTTTCCCCAGTGGAACCTACAGTACCAATGGAATACGAAATCTGCATCCCCGGTACTCTTGATTCTTGATGATGTGTGGTCTGCATCTGTTCTAGAGCCACTAGTTTTCAAGATCCC</genome_strand>
        <mrna_strand>GAGGGAAAAAACAGTTCGAAGTCTCCAAACATGGCGGTGACGGACTTTTTCGCCGGCGAGATTACCACCGAACTCATAAAATACCTGCTGTTGATAGTTAAAAAATCCACTTTATGCCGTTCAAGCGCAGAGAATCTCATTGACAATATCAATGGTCTCCTTCCAATCATCCAAGAAATCAAACAAACCGGTGTTGAACTTCCACAGATACGGCAAACTCAGCTCGACGATTTCTCCAAACTTCTCCGAGATGGCTACGAACTCGCCGGAAAAGTTCTCCACTCCGGCCGTTGGAATATGTACAG.................................................................................................................GAACCTACAGTTGGCTAGGAAAATGGAGAGGTTAGAGAAAAGAGTAGCGAGGTTCATGCAAGTGACAATGCAAGCTCATGTACTAGCTGATGTTCATCATGTTAGGTTTAATATGGAGCAGAGATTTGATGTGCTTGAGCATAGGCTTAAAGCTATAAAAATCGGAGTTGATGATAGAAGTGGTGGAGGAGGAGGGTGTTTAGGGGAAGCTGTGAAAAGAATGGAAGAAGATGAGAAATGGTTTGAGGATAGTTTTGTAAATTTAGGTGCTGGGATTGAATTGGGGAAGAGGAAGGTGAAGGAGATGCTGATGGGTGAACAAGATAGGGGTGTGTTTGAGATTTGTGGAATTGGGGGTAGTGGCAAAACTACCTTGGCTAAAGAGATTTGTAAAGATGATCAAGTTAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCAAGGACAAGATTTTCTTTTTCACTGTCTCTCAATCTCCAAATGTGGAGCAATTAAGGAAAATGATTTGGGAAAAGATATCAGGGTGTAATCTCCATGGTTATGGATACGGGGAGATGTTTCCCCAGTGGAACCTACAGTACCAATGGAATACGAAATCTGCATCCCCGGTACTCTTGATTCTTGATGATGTGTGGTCTGCATCTGTTCTAGAACCACTAGTTTTCAAGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317495" ref_strand="+" ref_description="SGN-U317495        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT4G33300.1 | Symbol: ADR1-L1 | disease resistance protein (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. | chr4:16051061-16056530 REVERSE | Aliases: F17M5.60, F17M5_60, ADR1-L1, ADR1-LIKE 1 (evalue: 2e-128, score=456) genbank/nr: gi|77556936|gb|ABA99732.1| disease resistance, putative [Oryza sativa (japonica cultivar-group)] (evalue: 4e-135, score=484)">
      <seq>ttagattttgccattttgcttttggacacaattcctttccgcgtggtttcagccaaaagcttgtcaaagagattgtggatgaatgtgaagggcttcctttggctcttaaggtcattggatcttcattgaagggaaaacctgagatgttatggacaagtgcaaaaaacagattatcacggtgccaacctgtctgcgagtctcatgaactgcagttgcttgagcgaatgaaattgagtattgactgtttgcctgagaaggtgcgagagtgtttcctggacttgggtgctttcccagaagacaaaaggattcctctcgatgttctaattaacatgtgggtggagctacatgatattgatgaggaggaggcttttcacattcttgttgaactttcagacaaaaatctcctaaatctagtcaaagatgcacgagctggagacatgtatacaagttactatgagatatcggtgtttcagcatgatgtattacgagacctagcaattcatatgagcaaccgtgatgatataaataagagaaagcgattggttatgccgcgaagagacacaagcttcccaagagaatgggaaagaaatgtggacgaacctttccatgcacgagtcatctctgtgcatacagatgaaatgagagaaatggactggttcagaatggattgcccgaaagttgaagtactgattctcaactttgcctcatctgaatacttcttacctccttttctggagaacatgccaaagctaagggcattgataatcataaactatagtgctggcaatgccgttcttcataacatgtctgtattcagtcatttaaccaacttgagaagcctttggttcgagaagatatccatcactcacttatctgactccacaaatcctctcaataacctgcgaaagatatctctagtgctttgtgacatgaaaaacagcttagatgagtcagatgtagacctccctggtttgttcccacagctctcggagttcacaatggatcactgcatcaacttcaacaagctaccatcaagcatttgccggttgcataagctcaacagccttagcatcactaattgtgatagtctttatgaacttccatctgatttaggtgaattacaaactctacaagttctaaggatatatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="21108" stop="23151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21404" g_stop="21474" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21475" i_stop="21572" i_length="98">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21573" g_stop="21928" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="427" r_length="356" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21929" i_stop="22041" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22042" g_stop="22247" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="633" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22248" i_stop="22332" i_length="85">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22333" g_stop="22851" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="1152" r_length="519" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-U317495" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1152</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21404" e_stop="21474"/>
          <exon e_start="21573" e_stop="21928"/>
          <exon e_start="22042" e_stop="22247"/>
          <exon e_start="22333" e_stop="22851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATTTTGCCATTTTGCTTTTGGACACAATTCCTTTCCGCGTGGTTTCAGCCAAAAGCTTGTCAAAGAGGTATTAGTGTGTGTTTTTGGCAGCATGTTAATTTTTCTTTGCAAAAAACTTCTTGTTATACTTGAGTTAAGCTAACTAAAGCTTCTTGGACTTTTTAGATTGTGGATGAATGTGAAGGGCTTCCTTTGGCTCTTAAGGTCATTGGATCTTCATTGAAGGGAAAACCTGAGATGTTATGGACAAGTGCAAAAAATAGATTATCACGATGCCAACCTGTCTGTGAGTCTCATGAACTGCAGTTGCTTGAGCGAATGAAATTGAGTATTGACTGTTTGCCTGAGAAGGTGCGAGAGTGTTTCCTGGACTTGGGTGCTTTCCCAGAAGACAAAAGGATTCCTCTCGATGTTCTAATTAACATGTGGGTGGAGCTACATGATATTGATGAGGAGGAGGCTTTTCACATTCTTGTTGAACTTTCAGACAAAAATCTCCTAAATCTAGTCAAAGATGCACGGTAAGTGGTGGATTCAAATCTCTTCAAACGATCTTTTAATTTTTGTTAGAAGGTGATTGTTTATGGAAAAAATCAATATGTTGATAGTCTTCAATGTGTTGTTCATGTGGCAGAGCTGGAGACATGTATACAAGTTACTATGAGATATCGGTGTTTCAGCATGATGTATTACGAGACCTAGCAATTCATATGAGCAACCGTGATGATATAAATAAGAGAAAGCGATTGGTTATGCCGCGAAGAGACACAAGCTTCCCAAGAGAATGGGAAAGAAATGTGGACGAACCTTTCCATGCACGAGTCATCTCTGTGCATACAGGTATTAGATCCTTGATTAATGCTGATTGCTTAGTAATGAAAAGTTTATCTTGTGATATAAACATAAATATTTCTCTGTAATGTAGATGAAATGAGAGAAATGGACTGGTTCAGAATGGATTGCCCGAAAGTTGAAGTACTGATTCTCAACTTTGCCTCATCTGAATACTTCTTACCTCCTTTTCTGGAGAACATGCCAAAGCTAAGGGCATTGATAATCATAAACTATAGTGCTGGCAATGCCGTTCTTCATAACATGTCTGTATTCAGTCATTTAACCAACTTGAGAAGCCTTTGGTTCGAGAAGATATCCATCACTCACTTATCTGACTCCACAAATCCTCTCAATAACCTGCGAAAGATATCTCTAGTGCTTTGTGACATGAAAAACAGCTTAGATGAGTCAGATGTAGACCTCCCTGGTTTGTTCCCACAGCTCTCGGAGTTCACAATGGATCACTGCATCAACTTCAACAAGCTACCATCAAGCATTTGCCGGTTGCATAAGCTCAACAGCCTTAGCATCACTAATTGTGATAGTCTTTATGAACTTCCATCTGATTTAGGTGAATTACAAACTCTACAAGTTCTAAGGATATATGCCT</genome_strand>
        <mrna_strand>TTAGATTTTGCCATTTTGCTTTTGGACACAATTCCTTTCCGCGTGGTTTCAGCCAAAAGCTTGTCAAAGAG..................................................................................................ATTGTGGATGAATGTGAAGGGCTTCCTTTGGCTCTTAAGGTCATTGGATCTTCATTGAAGGGAAAACCTGAGATGTTATGGACAAGTGCAAAAAACAGATTATCACGGTGCCAACCTGTCTGCGAGTCTCATGAACTGCAGTTGCTTGAGCGAATGAAATTGAGTATTGACTGTTTGCCTGAGAAGGTGCGAGAGTGTTTCCTGGACTTGGGTGCTTTCCCAGAAGACAAAAGGATTCCTCTCGATGTTCTAATTAACATGTGGGTGGAGCTACATGATATTGATGAGGAGGAGGCTTTTCACATTCTTGTTGAACTTTCAGACAAAAATCTCCTAAATCTAGTCAAAGATGCACG.................................................................................................................AGCTGGAGACATGTATACAAGTTACTATGAGATATCGGTGTTTCAGCATGATGTATTACGAGACCTAGCAATTCATATGAGCAACCGTGATGATATAAATAAGAGAAAGCGATTGGTTATGCCGCGAAGAGACACAAGCTTCCCAAGAGAATGGGAAAGAAATGTGGACGAACCTTTCCATGCACGAGTCATCTCTGTGCATACAG.....................................................................................ATGAAATGAGAGAAATGGACTGGTTCAGAATGGATTGCCCGAAAGTTGAAGTACTGATTCTCAACTTTGCCTCATCTGAATACTTCTTACCTCCTTTTCTGGAGAACATGCCAAAGCTAAGGGCATTGATAATCATAAACTATAGTGCTGGCAATGCCGTTCTTCATAACATGTCTGTATTCAGTCATTTAACCAACTTGAGAAGCCTTTGGTTCGAGAAGATATCCATCACTCACTTATCTGACTCCACAAATCCTCTCAATAACCTGCGAAAGATATCTCTAGTGCTTTGTGACATGAAAAACAGCTTAGATGAGTCAGATGTAGACCTCCCTGGTTTGTTCCCACAGCTCTCGGAGTTCACAATGGATCACTGCATCAACTTCAACAAGCTACCATCAAGCATTTGCCGGTTGCATAAGCTCAACAGCCTTAGCATCACTAATTGTGATAGTCTTTATGAACTTCCATCTGATTTAGGTGAATTACAAACTCTACAAGTTCTAAGGATATATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323652" ref_strand="+" ref_description="SGN-U323652        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT2G26510.1 | Symbol: None | xanthine/uracil permease family protein, contains Pfam profile: PF00860 permease family | chr2:11281023-11284708 FORWARD | Aliases: T9J22.18, T9J22_18 (evalue: 0, score=743) genbank/nr: Xanthine/uracil/vitamin(evalue: 0, score=769)">
      <seq>aaaaataaaaagataaaaaaatggggtgtctataatttgcatgtttcagtacttattaatctcaaaatctgatcttgagtatttaaattccatttacttactattgtaattaatgctagtcatttcaagaaaaggggaaaaagactcaatttttaagctcaggtttcatgtcggtgctgattcttgaaaactaagtttaaagattcaacctttagacctattttgtagattttttttttttgagagaaaattatgggggagacacataatcatgaacacaaccaccagccaccgccgcaacaggcggcggcgccaccagcaatgccacttggttcagcaaggggacctatgtttcctccggcagagcaactacttcagcttcgctactgcatacactcaaatccttcttggccacaaactgttttgttggcttttcaacactacatagttatgcttggaacaacagtaatgattgccaccgtgctggtacctcagatgggtgggggtccgggtgacaaagctcaagttatccagtctttgcttttcacttcaggagtgaatactcttctgcaaacgccttttggcacaagacttcccactgtgatgggtccgtcatttgcttacatcatatcagctctgtcagtcattaacgatctctcggacagtaatttcaggagtgagcatgagagattcaagcacactatgagagctattcaagggtcactgatagtgtcttcctttatcaacataatacttggatatggccaagcgtggggaaatcttacaaggtttttcagtcctgtagtcattacgccacttgtctgtgttgtaggtcttggtttgtttggtaggggttttcctcaggtgggtgattgtatagagattggccttcccatgttaattctacttgtcatttctcagcagtatatgcaacgtgttcatccagttgcccaatccatacttgaaaggtttgctttgctcctctgcattgggtttatctgggcttttgctgctattcttactgttgccggtgcttacaaccatgtgaaggagcaaactaagatgaactgccgaattgaccattcgttcctcttgtcatcggctccatggatcaaagttccttaccctttcctgtgggggactcctatattcagagctagcaatgtctttggaatgatgggtgctgcacttgtatcagcagcagagtcaacagcaactttttatgctgcatcaaggcttgcaggtgcgaccacccctccggcccatgttgtgagtagaagcattggcttacagggtataggacagctctttgacgggttctttggtgctattgttggtactactgcatctgttgaaaatgtcggccttctgggactaactcgtgttgggagtagaagagttgttcagatttctactgctttcatgatcttcttctccatatttggaaaattcggagcattctttgctcaaattcctttgcccatatttgcagctatctactgcatcttatacggtatagtagctgctattggtatttccttcatccaatttgcgaacaaaaactccatgcggaatatatacgtgctcggtgtctctctattcctcggtatatctatacctcaatactttgtgatgaacacagatatagctggtcatggacctgttagaactccagctggatggttcaatgacatattgaacacaatattctcttcacctcctactgttgcaacgattgtcgggacagtagtagacaacacactcgaagcaagacactcatatgacgatagaggtattccgtggttggttcctttccagaggaggaaaggagatagcagaaatgaggagttctatagttaccctcttagaattaatgagtacatcccaagtagatttctgtgataacttatacatccatgtatatgactgtatcaaagctgtatgacaaaatttctttttagctctccactttagtccattgtttgtttgtttttccatttcaattcttgtcacatgaaatttttgaacatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="31580" stop="23887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31281" g_stop="30870" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30869" i_stop="28775" i_length="2095">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28774" g_stop="28677" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="510" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28676" i_stop="28591" i_length="86">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28590" g_stop="28414" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="687" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28413" i_stop="26916" i_length="1498">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26915" g_stop="26815" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="788" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26814" i_stop="26657" i_length="158">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26656" g_stop="26581" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="864" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26580" i_stop="26489" i_length="92">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26488" g_stop="26429" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="865" r_stop="924" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26428" i_stop="26347" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26346" g_stop="26162" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="925" r_stop="1109" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26161" i_stop="26085" i_length="77">
            <donor d_prob="0.104" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26084" g_stop="25988" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1110" r_stop="1206" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="25987" i_stop="25688" i_length="300">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="25687" g_stop="25601" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1207" r_stop="1293" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="25600" i_stop="25477" i_length="124">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="25476" g_stop="25418" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1294" r_stop="1352" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="25417" i_stop="25225" i_length="193">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="25224" g_stop="25133" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1353" r_stop="1444" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="25132" i_stop="25023" i_length="110">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="25022" g_stop="24945" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1445" r_stop="1522" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="24944" i_stop="24862" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="24861" g_stop="24701" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1523" r_stop="1683" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="24700" i_stop="24540" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="24539" g_stop="24195" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1684" r_stop="2028" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2033" polyA_stop="2047"/>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-U323652" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2028</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31281" e_stop="30870"/>
          <exon e_start="28774" e_stop="28677"/>
          <exon e_start="28590" e_stop="28414"/>
          <exon e_start="26915" e_stop="26815"/>
          <exon e_start="26656" e_stop="26581"/>
          <exon e_start="26488" e_stop="26429"/>
          <exon e_start="26346" e_stop="26162"/>
          <exon e_start="26084" e_stop="25988"/>
          <exon e_start="25687" e_stop="25601"/>
          <exon e_start="25476" e_stop="25418"/>
          <exon e_start="25224" e_stop="25133"/>
          <exon e_start="25022" e_stop="24945"/>
          <exon e_start="24861" e_stop="24701"/>
          <exon e_start="24539" e_stop="24195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATAAAAAGATAAAAAAATGGGGTGTCTATAATTTGCATGTTTCAGTACTTATTAATCTCAAAATCTGATCTTGAGTATTTAAATTCCATTTACTTACTATTGTAATTAATGCTAGTCATTTCAAGAAAAGGGGAAAAAGACTCAATTTTTAAGCTCAGGTTTCATGTCGGTGCTGATTCTTGAAAACTAAGTTTAAAGATTCAACCTTTAGACCTATTTTGTAGATTTTTTTTTTTTGAGAGAAAATTATGGGGGAGACACATAATCATGAACACAACCACCAGCCACCGCCGCAACAGGCGGCGGCGCCACCAGCAATGCCACTTGGTTCAGCAAGAGGACCTATGTTTCCTCCGGCAGAGCAACTACTTCAGCTTCACTACTGCATACACTCAAATCCTTCTTGGCGTTAGTATTCTTTTTCATTTCTTTAATTTTAGTTACTTATAGTGGAATCTATACATGCCTTACTGAAAAGATAAAGAGGAAAAATTGACACTTTGTTTTGTTAAAGTTTGTGTCTTTTTCATTCTTGGATTGGGGTGAATTTTATAATCTTAAAGTATTGGGATTGAAATTGATGTTTTTTGTTGTAAAGTTTTTGTTTTTAGTTTTTTGGTTGGGGTGAATTTTAAAATCAGAAGTATTGCTTGTAATATTAATGTGTTTTTTTGTGCTGAAGAAGAATCTACTTGTAAAGTTAAAGATGAAAAAATTGACACCCGCCTTTTTGTGAAGTTTGTGTTTTCATTTTCATGGTTTGAGTGAATTTTAAAATCTAAAAGTATTCCTACTGAATAACCTTTTTGCTGAACAAGAATCAACTTGTAAAAGGTTCAACCTTTTTATGTTTTTTAAAATATGTTTCAGTTTTCTGATTGTTTTGTGTGATAGTGTCATCTTTGAGAATGTAAAGCTTCCTTCCAGCAGTCCTTCTTGTGTTCCTGTTCTTTGGTATAAATTGATGCCAATTTTCCACATGGTCTAGCTTTGTTCGCTCTTATTGCGAGACAATCACAAAAACAGAAGAGGTTAAATTGTTCCGGTTATAGTAAGATTAACTGTCAGAATGATGAATTGCTGAAGAGCTAAGTCTCCCTTCCAACGGGGAGAACTGATAACTTGGTGGTTTCCTCAAGCGGGATAGAATGGGTTTGATCAGAATACGCCAATAATGTTGCCAAATTGAGCTAATCCCCGTACCGTGAGCCTATAGTCCTATATTGACATCGCTTCCCAAGCTTCGATCCCGTTACTCAGTTTACTCATTTTTGTCACCAATTGTTAATGTGAGCTATGTATTCAGTGAAGATTCCATTTCATGTGCAATAGTAGAATCAGATAAGCCTGTTGGAAGTTTTCTTCTTTTGCATGGGATGTGACGTTGCATGGTTGGATCTACACTTTCTGCTGCACTTTGGTCGCAAATAATGTGGCGCATTGAGTTCTATACAGACAAACAAATTTAAAGCTATTCAGATGAGCCAAAGATTAGATAGATGAAAGGCCGCTACCTTCCAAAAAGAGGAGAGGATGAGGAGGCACTTTCTGAAACGACGTAGGCCATCTTAATTAGCTTAATTGCTTCTAAGGGTATTGGGATTCAATGATGATGAGGAAAAGGAAGAGTCTCTGCAGATATTATCGACTTAAAATTCATTATAGCTTCTAAATCGTCCAAGACATGTAATGGTCACTTTTTCATGTGAGTCAATTGGTGCTTATGCTTTTTGACTATCGTCAGGTGAAGAAATTGGAATCATAGTAAGCATGGTGATTTAGAAAGCTCCCCGCTCCTCCAATGTTTGGAGTTGAGATTGCTCTGACTGCCGAGTTAAATGCTTTTGTTTCTAGTATCGAGTTGTAACATGTTCTCTTTTTCTCTTGAGGGAGCTGTCTATCATGAGAAGACTTAAATCAAACTGTTTATGGGGAGTTGAGTGGTGTCAAGCTTCTTTCTTAAGATGCAGAATGTATCATGGAAGGCTTTCCATAAATGTGAAATTTGCATTCATACAATATATAATTTTCCAACCAAAAGGAGTTTCAGTCTCTCCATGGAATGACTGAATTCTGATAACGACAAAAGATCCTCTTAACCATTGGTAGATTGCCTCAACATAAACTGTTATTTAGCTAAAGGATAATTCTTGTATTTTACCATCCGAGGAATATACTTTGATAGAACAAAGGTTTCCCTATTGAGCAATAAGATCTGGCTTGTAGTTACCTTGTTTGTGCTGCATATGGCCCACTTGAGCAATCACTTCTCTGATTATTCGCCTTGTTCCTGTAAATTGGAATTTTTACTTTGTTATCACATAAAGAAATAAAAGAATTTCAGAAAATCGTGACCGTAACAATTTCATGATCTAACTTATCCTCCCAAAAAATGATTGTATGATTTGAAGTTTTCACCACCTGTAATGAGTTGCTGATTCTGAAACCTGACTATATTATTGGTCTTTTTCTCTAACTACTTGCATGATTCTAAATTTTGCAGCACAAACTGTTTTGTTGGCTTTTCAACACTACATAGTTATGCTTGGAACAACAGTAATGATTGCCACCGTGCTGGTACCTCAGATGGGTGGGGGTCCGGTATATCTCTGCATTTCCCTTGTTTGTATTGGAGTTACCTTTTCGATGTAATATTGACATTGTGAGCTCTTTATCTTTATGAGCAGGGTGACAAAGCTCAAGTTATCCAGTCTTTGCTTTTCACTTCAGGAGTGAATACTCTTCTGCAAACGCTTTTTGGCACAAGACTTCCCACTGTGATGGGTCCGTCATTTGCTTACATCATATCAGCTCTGTCAGTCATTAACGATCTCTCGGACAGTAATTTCAGGAGTGAGCATGAGGTAACAAAATTTATTGTTTAGGTATTACCTCTATTACTTGTATAATGTATTTTATGGAAACCTGTCATTTTTCTTTTATCGCACCTTTAGTAGGTCCATCCCCCTATTTCAGTGATAAGACACAGTTGAAGAATAATTTGATGTTGTAGTAAACCAAATTTTTTTCAGAATTGATATTATTAGTTTATTCATTTCATGTCTAAATAGGATTTGTAGTCAGAATTATACAGAAGGTTTTTATTATTAGAAATACGGATATTGCTAGTTATTTTCATAATGCAGAGAGTAGTGGAGAATGGAAGAGAACTCAAAGAAATGTATTGACCTTATGAATAAATTATCTTCCGTCAAAGTAGTAGCAGAGCTTCTACGATTTTGACAGAGAATCAAAAACCTTGCACTGTTGATGGAAGGTACTAGCCAATATGTGTTGCCCGTCTGGCCAAGGATTATGTTGGTGAACTCATAGACAATTGTCATGAAAGAGTTAGATTATTTTCCTAAGATCATTGATTACTCTTAAAGCATAAATTCATTTAAATCATACGTCACCTTACCTTAATACTCTAATATTAATTCTTTGATATTGTATGGTGGATTTTGACTTTTGCATTTCAGATTATACTGATAAAAGATCCAATGTAAGTCGGCTAGAATCAAAGATTTAAATAAAAAAAAGTGGATATCTAAAGCAATCTGCTGATAGGCAAAACTTTCATTTCTTTGTATTCCTTGATCTTACTTAGTGGGGAAATCTCATCTGAAAAATATAGTTTTCCACTTTTCCTTTACTTGTGCAAAAGAGAGGTTTATGGAAAGCAGAAGTACAGTATAAGACAAGATATTCTCATATACAAAAGTGCTAATGACATCATAGTCGTATCAATTTAAGTTAAGCAAGCCCTTGTTTGGGGGATAAGCTTAATATTTTACATGACTGAGCTACCAGATGACTACTTTTTGTTGGGTAAGTAGCTTGTTCCGAGATAGGTACTTTGTTTATAGAGGATATTCAAAGACAAGATGTTCTCCCATACAAAGAAAGGCTGATAGTTACTTCACTTGTAATTTGAGCAGAAGCATCATAGTGGAAGACAAGATTATACGCAGAAATGCTGATGAAATTTTAATCTCATTTAAGAGTTAGGATAAGTCAAAGCCACAGTTTGAAGAATCAAAAAAGACATGGCGTCTTAAAAGGCTTTTAATGCATGTTCTTGGAATTACAGAGTGCGTGAATCTTACAGTTGAAGCATGCTACTTCCATGGAACTACCTCTTGTGATGAAACAGAAAAATTAATTTAATCTGCTTCTCACGTTCACCATGTCCATATTGATTAAGCACCCTGGTTTCAGATTCTGGCTTTACTTCCCCTGTGTTTTACCTCAAAGTTTGGGGCTTTGTGTTGTTAATGTGAAGTATGTTGTCAATGCTCATGACAGTGGGTAATTGCAGATGATATTTCTGATGTATTACCCTGATATTGTTGTTTGTAGAGATTCAAGCACACTATGAGAGCTATTCAAGGGTCACTGATAGTGTCTTCCTTTATCAACATAATACTTGGATATGGCCAAGCGTGGGGAAATCTTACAAGGTAAGTTGTGTTTTCTGCTTCTAAATACTTTTAACAAGAACCATTAGTGTTGGTTTTGAACTTCGGAATCGTCTTTCCATTGCCTTCCCATTATGTTTCATCGTTGTATTACTTTTCCTGTTGAAAAAATGACATGTCATCCTCCTACTTCTCTGCAGGTTTTTCAGTCCTGTAGTCATTACGCCACTTGTCTGTGTTGTAGGTCTTGGTTTGTTTGGTAGGGGTTTTCCTCAGGTATTACCCCAAATGTCTATCTAAAATCTTCATTGCTCAAAGAGTTGCATAAACATCATCCAGTTTTCCTTATGATGCTATAATTTGATCAGGTGGGTGATTGTATAGAGATTGGCCTTCCCATGTTAATTCTACTTGTCATTTCTCAGCAGGTAATATATTATTTCATTGACTGTATTTTCGATTTTCTTTTGCTTTACTGGAAGATTGTAATGTTGGTCAAGTCATCTGCAGTATATGCAACGTGTTCATCCAGTTGCCCAATCCATACTTGAAAGGTTTGCTTTGCTCCTCTGCATTGGGTTTATCTGGGCTTTTGCTGCTATTCTTACTGTTGCCGGTGCTTACAACCATGTGAAGGAGCAAACTAAGATGAACTGCCGAATTGACCATTCGTTCCTCTTGTCATCGGCTCCATGGTACTCAGCTGGACTAAATAATGACAATGTCTTCAGCTCTCTGTCTTCTTCTGACATGTATGTTTTGCTGCGTGTAGGATCAAAGTTCCTTACCCTTTCCTGTGGGGGACTCCTATATTCAGAGCTAGCAATGTCTTTGGAATGATGGGTGCTGCACTTGTATCAGCAGCAGAGGTTCACTTTTAATTTTAAATTTTGTTCATTTCCCTTTGTATTAGATTTTCTTTTAGTAACACGAGTTTTAGTACTTGGTTCCACTAACAAATTATGGGTTTAGAGAGAATCACACCCCATGATTGCTTTCTGCTATAATCACTTGGTTTCCTTTCCCTCTAGCTAATTAGTTCACCTTAAAGTCTTATGTGTATATTCTTCTTGATCTTGCATTGATCCGAACCTGAATTGTTTGTGGCATTCACTTAAGCAGTTGTTGTTATGATCTCTTTCAAATTTACCTCAAATATTCATTTGCAGTCAACAGCAACTTTTTATGCTGCATCAAGGCTTGCAGGTGCGACCACCCCTCCGGCCCATGTTGTGAGTAGAAGCATTGGCTTACAGGTGCGACATCCACCAAGTGATTCAGCAATGCCTTTTCACTTGAGCACAATTTTTCTTCTAATTTAGCCCCTCCAATTAACTCTTCATTAGAAAGTTGTTCAGTTGTGCTTTGCTTCTTATCCAGGGTATAGGACAGCTCTTTGACGGGTTCTTTGGTGCTATTGTTGGTACTACTGCATCTGTGTAAGGGTTTTGATCAATTTGGTTGATATATAGTATCAACAGCATGCTTCTCAGTTAGATTTAGTTTATCTTGTTCTAAGTCTTTTACACTACATACCATCCGAGAACTCAGGTGTAGGCTACAGCCTAAAGCTACTTAAGTTTGAATATTGTGGCGCTTCATTCCTAATTTACGCATCATACAAAACTGCAGTGAAAATGTCGGCCTTCTGGGACTAACTCGTGTTGGGAGTAGAAGAGTTGTTCAGATTTCTACTGCTTTCATGATCTTCTTCTCCATATTTGGTATTGACATTCTCTCTCCCTCCATTTCTCCGCCACCCTGTCCCTTTCTTTCTTCATCTCAAACTATGTTTTACAACTAGCAGTGACTAATGTAAGTTGTTATTATCTAGGAAAATTCGGAGCATTCTTTGCTCAAATTCCTTTGCCCATATTTGCAGCTATCTACTGCATCTTATACGGTATAGTAGGTAAGTGATTTCTCCCTTAGCAGCTTGTTAATCTTCGCGTCATCTTATTAACAATAACTAAAGAAGGGATATGTTTTCTGCAGCTGCTATTGGTATTTCCTTCATCCAATTTGCGAACAAAAACTCCATGCGGAATATATACGTGCTCGGTGTCTCTCTATTCCTCGGTATATCTATACCTCAATACTTTGTGATGAACACAGATATAGCTGGTCATGGACCTGTTAGAACTCCAGCTGGATGGGTAAGAACCATTACTCTCACATGATCCCTCGTTTTTTAATTTTGCGATATACATTTAACAGTAGATTTTAGGATAATAAGTTGTACTTGCAATTACCTAATGAATCTTTTACACCATCATTGACAACCTAAAACTTAAAACTTGACCGATGTTTTTTGCAGTTCAATGACATATTGAACACAATATTCTCTTCACCTCCTACTGTTGCAACGATTGTCGGGACAGTAGTAGACAACACACTCGAAGCAAGACACTCATATGACGATAGAGGTATTCCGTGGTTGGTTCCTTTCCAGAGGAGGAAAGGAGATAGCAGAAATGAGGAGTTCTATAGTTACCCTCTTAGAATTAATGAGTACATCCCAAGTAGATTTCTGTGATAACTTATACATCCATGTATATGACTGTATCAAAGCTGTATGACAAAATTTCTTTTTAGCTCTCCACTTTAGTCCATTGTTTGTTTGTTTTTCCATTTCAATTCTTGTCACATGAAATTTTTGAAC</genome_strand>
        <mrna_strand>AAAAATAAAAAGATAAAAAAATGGGGTGTCTATAATTTGCATGTTTCAGTACTTATTAATCTCAAAATCTGATCTTGAGTATTTAAATTCCATTTACTTACTATTGTAATTAATGCTAGTCATTTCAAGAAAAGGGGAAAAAGACTCAATTTTTAAGCTCAGGTTTCATGTCGGTGCTGATTCTTGAAAACTAAGTTTAAAGATTCAACCTTTAGACCTATTTTGTAGATTTTTTTTTTTTGAGAGAAAATTATGGGGGAGACACATAATCATGAACACAACCACCAGCCACCGCCGCAACAGGCGGCGGCGCCACCAGCAATGCCACTTGGTTCAGCAAGGGGACCTATGTTTCCTCCGGCAGAGCAACTACTTCAGCTTCGCTACTGCATACACTCAAATCCTTCTTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAACTGTTTTGTTGGCTTTTCAACACTACATAGTTATGCTTGGAACAACAGTAATGATTGCCACCGTGCTGGTACCTCAGATGGGTGGGGGTCCG......................................................................................GGTGACAAAGCTCAAGTTATCCAGTCTTTGCTTTTCACTTCAGGAGTGAATACTCTTCTGCAAACGCCTTTTGGCACAAGACTTCCCACTGTGATGGGTCCGTCATTTGCTTACATCATATCAGCTCTGTCAGTCATTAACGATCTCTCGGACAGTAATTTCAGGAGTGAGCATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCAAGCACACTATGAGAGCTATTCAAGGGTCACTGATAGTGTCTTCCTTTATCAACATAATACTTGGATATGGCCAAGCGTGGGGAAATCTTACAAG..............................................................................................................................................................GTTTTTCAGTCCTGTAGTCATTACGCCACTTGTCTGTGTTGTAGGTCTTGGTTTGTTTGGTAGGGGTTTTCCTCAG............................................................................................GTGGGTGATTGTATAGAGATTGGCCTTCCCATGTTAATTCTACTTGTCATTTCTCAGCAG..................................................................................TATATGCAACGTGTTCATCCAGTTGCCCAATCCATACTTGAAAGGTTTGCTTTGCTCCTCTGCATTGGGTTTATCTGGGCTTTTGCTGCTATTCTTACTGTTGCCGGTGCTTACAACCATGTGAAGGAGCAAACTAAGATGAACTGCCGAATTGACCATTCGTTCCTCTTGTCATCGGCTCCATG.............................................................................GATCAAAGTTCCTTACCCTTTCCTGTGGGGGACTCCTATATTCAGAGCTAGCAATGTCTTTGGAATGATGGGTGCTGCACTTGTATCAGCAGCAGAG............................................................................................................................................................................................................................................................................................................TCAACAGCAACTTTTTATGCTGCATCAAGGCTTGCAGGTGCGACCACCCCTCCGGCCCATGTTGTGAGTAGAAGCATTGGCTTACAG............................................................................................................................GGTATAGGACAGCTCTTTGACGGGTTCTTTGGTGCTATTGTTGGTACTACTGCATCTGT.................................................................................................................................................................................................TGAAAATGTCGGCCTTCTGGGACTAACTCGTGTTGGGAGTAGAAGAGTTGTTCAGATTTCTACTGCTTTCATGATCTTCTTCTCCATATTTG..............................................................................................................GAAAATTCGGAGCATTCTTTGCTCAAATTCCTTTGCCCATATTTGCAGCTATCTACTGCATCTTATACGGTATAGTAG...................................................................................CTGCTATTGGTATTTCCTTCATCCAATTTGCGAACAAAAACTCCATGCGGAATATATACGTGCTCGGTGTCTCTCTATTCCTCGGTATATCTATACCTCAATACTTTGTGATGAACACAGATATAGCTGGTCATGGACCTGTTAGAACTCCAGCTGGATGG.................................................................................................................................................................TTCAATGACATATTGAACACAATATTCTCTTCACCTCCTACTGTTGCAACGATTGTCGGGACAGTAGTAGACAACACACTCGAAGCAAGACACTCATATGACGATAGAGGTATTCCGTGGTTGGTTCCTTTCCAGAGGAGGAAAGGAGATAGCAGAAATGAGGAGTTCTATAGTTACCCTCTTAGAATTAATGAGTACATCCCAAGTAGATTTCTGTGATAACTTATACATCCATGTATATGACTGTATCAAAGCTGTATGACAAAATTTCTTTTTAGCTCTCCACTTTAGTCCATTGTTTGTTTGTTTTTCCATTTCAATTCTTGTCACATGAAATTTTTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330610" ref_strand="+" ref_description="SGN-U330610        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ttttttttttcaatagggaaacctttgttctatcaaagtatattcctcggatggtaaaatacaagaattatcctttagctaaataacagtttatgttgaggcaatctaccaatggttaagaggatcttttgtcgttatcagaattcagtcattccatggagagactgaaactccttttggttggaaaattatatattgtatgaatgcaaatttcacatttatggaaagccttccatgatacattctgcatcttaagaaagaagcttgacaccactcaactccccataagcagtttgatttaagtcttctcatgatagacagctccctcaagagaaaaagagaacatgttacaactcgatactagaaacaaaagcatttaactcggcagtcagagcaatctcaactccaaacattggaggagcggggagctttctaaatcaccatgcttactatgattccaatttcttcacctgacgatagtcaaaaagcataagcaccaattgactcacatgaaaaagtgaccattacatgtcttggacgatttagaagctataatgaattttaagtcgataatatctgcagagactcttccttttcctcatcatcattgaatcccactaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="28764" stop="29987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29064" g_stop="29687" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-U330610" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29064" e_stop="29687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATTGCTCAATAGGGAAACCTTTGTTCTATCAAAGTATATTCCTCGGATGGTAAAATACAAGAATTATCCTTTAGCTAAATAACAGTTTATGTTGAGGCAATCTACCAATGGTTAAGAGGATCTTTTGTCGTTATCAGAATTCAGTCATTCCATGGAGAGACTGAAACTCCTTTTGGTTGGAAAATTATATATTGTATGAATGCAAATTTCACATTTATGGAAAGCCTTCCATGATACATTCTGCATCTTAAGAAAGAAGCTTGACACCACTCAACTCCCCATAAACAGTTTGATTTAAGTCTTCTCATGATAGACAGCTCCCTCAAGAGAAAAAGAGAACATGTTACAACTCGATACTAGAAACAAAAGCATTTAACTCGGCAGTCAGAGCAATCTCAACTCCAAACATTGGAGGAGCGGGGAGCTTTCTAAATCACCATGCTTACTATGATTCCAATTTCTTCACCTGACGATAGTCAAAAAGCATAAGCACCAATTGACTCACATGAAAAAGTGACCATTACATGTCTTGGACGATTTAGAAGCTATAATGAATTTTAAGTCGATAATATCTGCAGAGACTCTTCCTTTTCCTCATCATCATTGAATCCCAATACCCT</genome_strand>
        <mrna_strand>TTTTTTTTTTCAATAGGGAAACCTTTGTTCTATCAAAGTATATTCCTCGGATGGTAAAATACAAGAATTATCCTTTAGCTAAATAACAGTTTATGTTGAGGCAATCTACCAATGGTTAAGAGGATCTTTTGTCGTTATCAGAATTCAGTCATTCCATGGAGAGACTGAAACTCCTTTTGGTTGGAAAATTATATATTGTATGAATGCAAATTTCACATTTATGGAAAGCCTTCCATGATACATTCTGCATCTTAAGAAAGAAGCTTGACACCACTCAACTCCCCATAAGCAGTTTGATTTAAGTCTTCTCATGATAGACAGCTCCCTCAAGAGAAAAAGAGAACATGTTACAACTCGATACTAGAAACAAAAGCATTTAACTCGGCAGTCAGAGCAATCTCAACTCCAAACATTGGAGGAGCGGGGAGCTTTCTAAATCACCATGCTTACTATGATTCCAATTTCTTCACCTGACGATAGTCAAAAAGCATAAGCACCAATTGACTCACATGAAAAAGTGACCATTACATGTCTTGGACGATTTAGAAGCTATAATGAATTTTAAGTCGATAATATCTGCAGAGACTCTTCCTTTTCCTCATCATCATTGAATCCCACTACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341154" ref_strand="+" ref_description="SGN-U341154        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gtgaattttaaaatcagaagtattgcttgtaatattaatgtgtttttttgtgctgaagaagaatctacttgtaaagttaaagatgaaaaaattgacacccgcctttttgtgaagtttgtgttttcattttcatggtttgagtgaattttaaaatctaaaagtattcctactgaataacctttttgctgaacaagaatcaacttgtaaaaggttcaacctttttatgttttttaaaatatgtttcagttttctgattgttttgtgtgatagtgtcatctttgagaatgtaaagcttccttccagcagtccttcttgtgttcctgttctttggtataaattgatgccaattttccacatggtctagctttgttcgctcttattgcgagacaatcacaaaaacagaagaggttaaattgttccggttatagtaagattaactgtcagaatgatgaattgctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="30953" stop="29892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30653" g_stop="30192" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-U341154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30653" e_stop="30192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTTTAAAATCAGAAGTATTGCTTGTAATATTAATGTGTTTTTTTGTGCTGAAGAAGAATCTACTTGTAAAGTTAAAGATGAAAAAATTGACACCCGCCTTTTTGTGAAGTTTGTGTTTTCATTTTCATGGTTTGAGTGAATTTTAAAATCTAAAAGTATTCCTACTGAATAACCTTTTTGCTGAACAAGAATCAACTTGTAAAAGGTTCAACCTTTTTATGTTTTTTAAAATATGTTTCAGTTTTCTGATTGTTTTGTGTGATAGTGTCATCTTTGAGAATGTAAAGCTTCCTTCCAGCAGTCCTTCTTGTGTTCCTGTTCTTTGGTATAAATTGATGCCAATTTTCCACATGGTCTAGCTTTGTTCGCTCTTATTGCGAGACAATCACAAAAACAGAAGAGGTTAAATTGTTCCGGTTATAGTAAGATTAACTGTCAGAATGATGAATTGCTGAAG</genome_strand>
        <mrna_strand>GTGAATTTTAAAATCAGAAGTATTGCTTGTAATATTAATGTGTTTTTTTGTGCTGAAGAAGAATCTACTTGTAAAGTTAAAGATGAAAAAATTGACACCCGCCTTTTTGTGAAGTTTGTGTTTTCATTTTCATGGTTTGAGTGAATTTTAAAATCTAAAAGTATTCCTACTGAATAACCTTTTTGCTGAACAAGAATCAACTTGTAAAAGGTTCAACCTTTTTATGTTTTTTAAAATATGTTTCAGTTTTCTGATTGTTTTGTGTGATAGTGTCATCTTTGAGAATGTAAAGCTTCCTTCCAGCAGTCCTTCTTGTGTTCCTGTTCTTTGGTATAAATTGATGCCAATTTTCCACATGGTCTAGCTTTGTTCGCTCTTATTGCGAGACAATCACAAAAACAGAAGAGGTTAAATTGTTCCGGTTATAGTAAGATTAACTGTCAGAATGATGAATTGCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320540" ref_strand="+" ref_description="SGN-U320540        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: AT1G47710.1 | Symbol: None | serpin, putative / serine protease inhibitor, putative, similar to phloem serpin-1 (Cucurbita maxima) GI:9937311; contains Pfam profile PF00079: Serpin (serine protease inhibitor) | chr1:17560649-17562709 FORWARD | Aliases: T2E6.22 (evalue: 6e-138, score=487) genbank/nr: gi|26224736|gb|AAN76362.1| serpin-like protein [Citrus x paradisi](evalue: 4e-153, score=544)">
      <seq>ttttttgttgactcataaaattcttcattcacaaaactcaaaaatctccattgaaatggaccttcaagaatcaatcagcaaccaaacaggcgtatccttaacgctagccaaacatgttttctccactgaggttaaaggggacaccacgaacatggtcttctcccctttgtcgatccatgtagtgttgggtctcatagcagcgggttcaaatggcccgacccgtgaccaattgctcagtttcctcaaatcgaagtgtactgatgaactaaactctctttcttctcagattgtagaggttgtctttgctgatggtagccctagtggtgggcctcgactttcggttgctaatagcgtctgggttgaacagactttgcctcttaagcattctttcaaacagattgtggacaatgtttataaggctacttcttcttctgttgattttcagaaaaaggctgttgaggttgccagtcaagtgaatcaatgggctgaaaaggaaacaaatgggcttatcaaagaaatacttccagctgactcagttgacagttcaacaagacttgtgtttgcaaatgcattgtactttaaaggagcctgggacgaaaagtttgatgcatcagtgaccaaggaaagtgagttccaccttctaaatgggacatctattcaagtgcccttcatgactagcaagacgaagcaatatgtaaaagcttttgatggtttcaaggtgttaggccttccgtataaacaaggtgaggatagacgccgtttctccatgtacttctttctgcctgatgccaatgatggactgccagctttggtagacaaggtcagttctgaatcccgattcttggagcgacaccttccatatcaaaaggttggagtcggtgaattccgtatccccaaatttaaaatatcatttggatttgaagcttctaacgttctgaaagggcttggcctggtattacctttctctggtgatggcctcactgagatggtagactcccccgttggcagtaacctctatgtttctaacatctttcacaagtcctttattgaggtaaatgaagagggaacagaagctgcagctgcaactgctggtgttgttaaactaagaggattgatgatggaagagaaagtagactttgttgctgatcatccatacctcttcctgattagagaagatgcaacaggcgtggtactgtttgttggtagtatgcttaatcctctcgctgagtaagtcgtattccactatattgaggttgatatatgttgcttgtatcttctttgtatcaccctcggactactttagtaccctgagttagctcaaaccaccttcttgcccttctatctcaaccgatactgtgagttcaatttgccaactgctctttgtatgtttgaaattcagtgtgacttgtaatggcctacagtgtactatgaaataattgacatccaaannaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="37799" stop="34447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37499" g_stop="37049" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37048" i_stop="35743" i_length="1306">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35742" g_stop="34746" g_length="997"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="1448" r_length="997" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-U320540" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1448</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37499" e_stop="37049"/>
          <exon e_start="35742" e_stop="34746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATAGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTTGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAACTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGATGTTATTCAGTTCCAATGACTCTCTCCGTTTTAATTTGTTTGTCTGTTTTAACTTGATATGGAGATATGGAGTTTAAGAAGTAGTTTCAAATGGTGGAAGATAAACCAGTAAACAAGGGAAATAAAATAACAAAAACTCCTAAAATGGTGGAACAAAAAATACAACCTATGCAATAAAACAAGTACTAACAAATGGTGAAGAAAGGAGCTTTTTGGATGCTGTATGGTGAGAACTTCAGCCAACTGGGTGGAACTAGGAAGTTGTTTTCTTGATGACCAACAAACTCAAGTAAGGCCAAGAAAACTAGCATAACCTGTGGTAGAATTTCGATCAGTGAGTTTGCCAGCCCAGTCAGGATTGGAAAACACCGAGAGATTTAGACTGGTGCTTGGAGCAATTCGAAGGCCATAGTTAGCAGTGCTTTTGAGATATGGAATGAGGCATTTAACAGTCTTCCAGTGAGCATCAGATGGAGTATGTGTAAATTGAGACAATTTGTTCACTTAGAAAGAAACATCAGGCCGAGTAAAAGACAAGTATTGCAACTTTCCACTTACTTTTCTTGTATTTGGTAGCATCAGGAGATGCAGGATCAGCCGAAGTAGTCCTGTTTTATATTTTGTTACATAAGAGATTCAGTTTGATTAATGTTTATGCTCGAGGGATTGTCATTTCTACTTTTAGCTAAGATAAGACTTTTAGTGAACTTCATATTTTTGACATTGGAAATTTAGCTGCTTCGGCTTTTATCTTTATTTGTACCTTTTCCTTTTAGCTGGAGACTGAACTATGAACATATTGGGTATGCATTTGCACTAGTGATAAACAGCAGGCCAATATATGGTGTCTCATATATTTTCACTATGCTTATCATTCACTTTAATCTCAAATACTGATGTATTGCTACCCTCTTTGGAAATCGAAGAAGTTCTGCGATCATTGCTTAAAAAACTGACTATACTCTTCAAACATTTCTGTTTCTCTGCAGCCTTAGCATGGATAGTTTTACAGTTATACTGACCTATATTAACATTAGTCACCCAGTAGTTGGAGCTAGACTCATATTAAAAGGATAGCATTGAAGTGAATATAAAATAAAAATAATCCTTTGAATAAATTATTATTACAAAAGTTTGGATGGTTTGTAGGCTGTTGAGGTTGCCAGTCAAGTGAATCAATGGGCTGAAAAGGAAACAAGTGGGCTTATCAAAGAAATACTTCCAGCTGACTCAGTTGACAGTTCAACAAGACTTGTGTTTGCAAATGCATTGTACTTTAAAGGAGCCTGGGACGAAAAGTTTGATGCATCAGTGACCAAGGAAAGTGAGTTCCACCTTCTAAATGGGACATCTATTCAAGTGCCCTTCATGACTAGCAAGACGAAGCAATATGTAAAAGCTTTTGATGGTTTCAAGGTGTTAGGCCTTCCGTATAAACAAGGTGAGGATAGACGCCGTTTCTCCATGTACTTCTTTCTGCCTGATGCCAATGATGGACTGCCAGCTTTGGTAGACAAGGTCAGTTCTGAATCCCGATTCTTGGAGCGACACCTTCCATATCAAAAGGTTGGAGTCGGTGAATTCCGTATCCCCAAATTTAAAATATCATTTGGATTTGAAGCTTCTAACGTTCTGAAAGGGCTTGGCCTGGTATTACCTTTCTCTGGTGATGGCCTCACTGAGATGGTAGACTCCCCCGTTGGCAGTAACCTTTATGTTTCTAACATCTTTCACAAGTCCTTTATTGAGGTAAATGAAGAGGGAACAGAAGCTGCAGCTGCAACTGCTGGTGTTGTTAAACTAAGAGGATTGATGATGGAAGAGAAAGTAGACTTTGTTGCTGATCATCCATACCTCTTCCTGATTAGAGAAGATGCAACAGGCGTGGTACTGTTTGTTGGTAGTATACTTAATCCTCTCGCTGAGTAAGTCGTATTCCACTATATTGAGATTGATATATGTTGCTTGTATCTTCTTTGTATCACCCTCGGACTACTTTAGTACCCTGAGTTAGCTCAAACCACCTTCTTGCCCTTCTATCTCAACCGATACTGTGAGTTCAATTTGCCAACTGCTCTTTGTATGTTTGAAATTCAGTGTGACTTGTAATGCCCTACCGTGTACTATGAAATAATTGACATCAAAG</genome_strand>
        <mrna_strand>TTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATTGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTAGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGAGGTTGCCAGTCAAGTGAATCAATGGGCTGAAAAGGAAACAAATGGGCTTATCAAAGAAATACTTCCAGCTGACTCAGTTGACAGTTCAACAAGACTTGTGTTTGCAAATGCATTGTACTTTAAAGGAGCCTGGGACGAAAAGTTTGATGCATCAGTGACCAAGGAAAGTGAGTTCCACCTTCTAAATGGGACATCTATTCAAGTGCCCTTCATGACTAGCAAGACGAAGCAATATGTAAAAGCTTTTGATGGTTTCAAGGTGTTAGGCCTTCCGTATAAACAAGGTGAGGATAGACGCCGTTTCTCCATGTACTTCTTTCTGCCTGATGCCAATGATGGACTGCCAGCTTTGGTAGACAAGGTCAGTTCTGAATCCCGATTCTTGGAGCGACACCTTCCATATCAAAAGGTTGGAGTCGGTGAATTCCGTATCCCCAAATTTAAAATATCATTTGGATTTGAAGCTTCTAACGTTCTGAAAGGGCTTGGCCTGGTATTACCTTTCTCTGGTGATGGCCTCACTGAGATGGTAGACTCCCCCGTTGGCAGTAACCTCTATGTTTCTAACATCTTTCACAAGTCCTTTATTGAGGTAAATGAAGAGGGAACAGAAGCTGCAGCTGCAACTGCTGGTGTTGTTAAACTAAGAGGATTGATGATGGAAGAGAAAGTAGACTTTGTTGCTGATCATCCATACCTCTTCCTGATTAGAGAAGATGCAACAGGCGTGGTACTGTTTGTTGGTAGTATGCTTAATCCTCTCGCTGAGTAAGTCGTATTCCACTATATTGAGGTTGATATATGTTGCTTGTATCTTCTTTGTATCACCCTCGGACTACTTTAGTACCCTGAGTTAGCTCAAACCACCTTCTTGCCCTTCTATCTCAACCGATACTGTGAGTTCAATTTGCCAACTGCTCTTTGTATGTTTGAAATTCAGTGTGACTTGTAATGGCCTACAGTGTACTATGAAATAATTGACATCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337143" ref_strand="+" ref_description="SGN-U337143        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G47710.1 | Symbol: None | serpin, putative / serine protease inhibitor, putative, similar to phloem serpin-1 (Cucurbita maxima) GI:9937311; contains Pfam profile PF00079: Serpin (serine protease inhibitor) | chr1:17560649-17562709 FORWARD | Aliases: T2E6.22 (evalue: 4e-36, score=148) genbank/nr: gi|26224736|gb|AAN76362.1| serpin-like protein [Citrus x paradisi](evalue: 3e-41, score=171)">
      <seq>ttttttgttgactcataaaattcttcattcacaaaactcaaaaatctccattgaaatggaccttcaagaatcaatcagcaaccaaacaggcgtatccttaacgctagccaaacatgttttctccactgaggttaaaggggacaccacgaacatggtcttctcccctttgtcgatccatgtagtgttgggtctcatagcagcgggttcaaatggcccgacccgtgaccaattgctcagtttcctcaaatcgaagtgtactgatgaactaaactctctttcttctcagattgtagaggttgtctttgctgatggtagccctagtggtgggcctcgactttcggttgctaatagcgtctgggttgaacagactttgcctcttaagcattctttcaaacagattgtggacaatgtttataaggctacttcttcttctgttgattttcagaaaaaggttcgatttttaacgccccatttttatttagagctattttctttcaatttttcaaatataattgattgattctgttatgaaatgcttgatgagataactgttatatgaagagatctgttgaatttgagtttttgagttgtttatggggaaattttgatgttattcagttccaagtactctctccgttttaatttgtttgtctgttttaacttgatatggagatatggagtttaagaagtagtttcaaatggtggaagatnaaccagtaaacaacggaaataaaataacaagaactcctaaaatggtggaacaaaaaatacaacctatgcnaataaacaagtactaacaaatggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="37799" stop="36393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37499" g_stop="36693" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="807" r_length="807" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-U337143" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37499" e_stop="36693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATAGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTTGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAACTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGATGTTATTCAGTTCCAATGACTCTCTCCGTTTTAATTTGTTTGTCTGTTTTAACTTGATATGGAGATATGGAGTTTAAGAAGTAGTTTCAAATGGTGGAAGATAAACCAGTAAACAAGGGAAATAAAATAACAAAAACTCCTAAAATGGTGGAACAAAAAATACAACCTATGCAATAAAACAAGTACTAACAAATGGTGA</genome_strand>
        <mrna_strand>TTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATTGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTAGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAATTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGATGTTATTCAGTTCCAAGTACTCTCTCCGTTTTAATTTGTTTGTCTGTTTTAACTTGATATGGAGATATGGAGTTTAAGAAGTAGTTTCAAATGGTGGAAGATNAACCAGTAAACAACGGAAATAAAATAACAAGAACTCCTAAAATGGTGGAACAAAAAATACAACCTATGCNAATAAACAAGTACTAACAAATGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320541" ref_strand="+" ref_description="SGN-U320541        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G47710.1 | Symbol: None | serpin, putative / serine protease inhibitor, putative, similar to phloem serpin-1 (Cucurbita maxima) GI:9937311; contains Pfam profile PF00079: Serpin (serine protease inhibitor) | chr1:17560649-17562709 FORWARD | Aliases: T2E6.22 (evalue: 2e-36, score=149) genbank/nr: gi|26224736|gb|AAN76362.1| serpin-like protein [Citrus x paradisi](evalue: 9e-41, score=169)">
      <seq>ttttttgttgactcataaaattcttcattcacaaaactcaaaaatctccattgaaatggaccttcaagaatcaatcagcaaccaaacaggcgtatccttaacgctagccaaacatgttttctccactgaggttaaaggggacaccacgaacatggtcttctcccctttgtcgatccatgtagtgttgggtctcatagcaacgggttcaaatggcccgacccgtgaccaattgctcagtttcctcaaatcgaagtgtactgatgaactaaactctctttcttctcagattgtagaggttgtctttgctgatggtagccctaatggtgggcctcgactttcggttgctaatagcgtctgggttgaacagactttgcctcttaagcattctttcaaacagattgtggacaatgtttataaggctacttcttcttctgttgattttcagaaaaaggttcgatttttaacgccccatttttatttagagctattttctttcaatttttcaaatataattgattgattctgttatgaactgcttgatgagatcactgttatatgaagagatctgttgaatttgagttcttgagttgtttatgggggaattttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="37799" stop="36591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37499" g_stop="36891" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-U320541" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37499" e_stop="36891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATAGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTTGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAACTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGAT</genome_strand>
        <mrna_strand>TTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATTGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAACGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTAGAGGTTGTCTTTGCTGATGGTAGCCCTAATGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAATTGATTGATTCTGTTATGAACTGCTTGATGAGATCACTGTTATATGAAGAGATCTGTTGAATTTGAGTTCTTGAGTTGTTTATGGGGGAATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323003" ref_strand="+" ref_description="SGN-U323003        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: AT1G47710.1 | Symbol: None | serpin, putative / serine protease inhibitor, putative, similar to phloem serpin-1 (Cucurbita maxima) GI:9937311; contains Pfam profile PF00079: Serpin (serine protease inhibitor) | chr1:17560649-17562709 FORWARD | Aliases: T2E6.22 (evalue: 5e-122, score=434) genbank/nr: gi|26224736|gb|AAN76362.1| serpin-like protein [Citrus x paradisi](evalue: 3e-130, score=468)">
      <seq>tgtgatcttcagagaaattaaaagtctttatttgttgttatgtgttttactgaatcaaattcaaatgcaaaaccccacctgttaagtaacagtttagtatataaattcttgcaaacctttcaactttgtgatcattcattctactcactatcctccttcttcttcttcgttttcgcgtgcaaatatggatcttcgagagtcaatcaccagccagactgatgtttctttcatgcttgctaagcatgttttctccaacgcggttaaaggcgataccaacctggtgctctctcctctttcaattcaaatagttcttggccttattgctgctggctctaatggacctactcagaatcagctactctctttcctcaagtccaattccattgatgaactcaactctctttattcacatatttccagtttcgtctttgctgatggcagccccaatggaggtccgcgattgtccgttgctaatggtatttggatcgatcaaacgctgcctttgaagccatctttcaaacaggttgtggataatgtttacaaggctgcttcagaatatgttgattttcaaaacaaggctgctgaagttgtcgatcaagtcaatcagtggactaaaatgaagacaaatggtctcatcgaagagattcttgatcgtgatgcagtggacaacatgacgaggctgatcttggctaatgcactatatttcaaaggtgaatggaatgagaagttcgatgcttcagaaacaaaagaccacgagttccatctcctcgatggattgcctgttcgagtaccctttatgactagcaagaagaagcagtacatagcaggatttaatggctttaaagtgttgaagtttccttataaacagggcacagatacacgttgcttctcaatgtatttcattctcccagatgcacatgatggattgcccgctttatttgataaaattagtacagaacctggattcttaactcaccacgttccatttagaaaagtcagggtgggcaagtttcttattcctaaattcaaaataaccttcgagtttgaagcttccgacattctaaagggacttggcctaacgttacctttctgcggtggtggtctcactgagatggttgattccactttacctgagaatccatctgtttcaaaagtttttcacaagtctttcattgagataaatgaggaaggcaccgaagctgcagctgttacagctggtgtaataatgaccacgtctcttagaattgagaaagaaatcgactttgttgctgaccatccattcctgttccttataagagacgacgctactggtgttgtgttgttcatagggagcgtgctgaatcctctttctggttaataagaccatatagcatgattatatacaactttgtaaagaaggacagttcacagtttcctctcttgtgtttctgtttgatgagagatgctatgtatctaaataaccagtttccagatttgtgtattattttgatgagatcttctactgtcttttgcaccttatatatttgactcttctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="42182" stop="39689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41882" g_stop="41306" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41305" i_stop="40949" i_length="357">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40948" g_stop="39989" g_length="960"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="1537" r_length="960" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-U323003" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41882" e_stop="41306"/>
          <exon e_start="40948" e_stop="39989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGATCTTCAGAGAAATTAAAAGTCTTTATTTGTTGTTATGTGTTTTACTGAATCAAATTCAAATGCAAAACCCCACCTGTTAAGTAACAGATTAGTATATAAATTCTTGCAAACCTTTCAACTTTGTGATCATTCATTCTACTCACTATCCTCCTTCTTCTTCTTCGTTTTCGCGTGCAAATATGGATCTTCGAGAGTCAATCACCAGCCAGACTGATGTTTCTTTCATGCTTGCTAAGCATGTTTTCTCCAACGCGGTTAAAGGCGATACCAACCTGGTGCTCTCTCCTCTTTCAATTCAAATAGTTCTTGGCCTTATTGCTGCTGGCTCTAATGGACCTACTCAGAATCAGCTACTCTCTTTCCTCAAGTCCAGTTCCATTGATGAACTCAACTCTCTTTATTCACATATTTCCAGTTTCGTCTTTGCTGATGGCAGCCCCAATGGAGGTCCGCGATTGTCCGTTGCTAATGGTATTTGGATCGATCAAACGCTGCCTTTAAGGCCTTCTTTCAAACAGGTTGTGGATAATGTTTACAAGGCTGCTTCAGAATATGTTGATTTTCAAAACAAGGTTAGGCCTTTGTTAATTTCATACTCTCTCCGCTTCAATTTATTTCTCGTACTTTTTAAGCCTTCAAAAGAAGAGAGCCTTGGTGTGGCTGGTAAAGTTGTTGTCATGTGACTAGGTCATCGATCAAGCTGTGAAAATAATTTCTTGCAGAAATGCAAGATACAACTGCATGAAATAGACTCTTATGGTCTAGCCAGTAGCCTTTCACTGTACCACGCACATGAGGGGAGCTTAGTGCACTGATTTCCCTTTTATAAGCCTCCAAACGTTCTTATGTGATATGAATACAAATGAGCAATTACTAATATGAAATGTCTAATTCTATCATTCCATGTTTGTCTTGCCAATTTGATTAAGGCTGCTGAAGTTGTCGATCAAGTCAATCAGTGGACTAAAATGAAGACAAATGGTCTCATCGAAGAGATTCTTGATCGTGATGCAGTGGACAACATGACGAGGCTGATCTTGGCCAATGCACTATATTTCAAAGGTGAATGGAATGAGAAGTTCGATGCTTCAGAAACAAAAGACCATGAGTTCCATCTCCTCGATGCATTGCCTATTCGAGTACCCTTCATGACTAGCAAGAAGAAGCAGTACATAGCAGGATTTAATGGCTTTAAAGTGTTGAAGTTTCCTTATAAACAGGGCACAGATACACGTTGCTTCTCAATGTATTTCATTCTCCCAGATGCACATGATGGATTGCCCGCTTTATTTGATAAAATTAGTACAGAACCTGGATTCTTAACTCACCACGTTCCATTTAGAAAAGTCAGGGTGGGCAAGTTTCTTATTCCTAAATTCAAAATAACCTTCGAGTTTGAAGCTTCCGACATTCTAAAGGGACTTGGGCTAACATTACCTTTCTGTGGTGGTGGTCTCACTGAGATGGTTGATTCCACTTTACCTGAGAATCCATCTGTTTCAAAAGTTTTTCACAAGTCTTTCATTGAGATAAATGAGGAAGGCACCGAAGCTGCAGCTGTTACAGCTGGTGTAATAATGACCACGTCTCTTAGAATTGAGAAAGAAATCGACTTTGTTGCTGACCATCCATTCCTGTTCCTTATAAGAGACGACGCTACTGGTGTTGTGTTGTTCATAGGGAGCGTGCTGAATCCTCTTTCTGGTTAATAAGACCATATAGCATGATTATATACAACTTTGTAAAGAAGGACAGTTCACAGTTTCCTCTCTTGTGTTTCTGTTTGATGAGAGATGCTATGTATCTAAATAACCAGTTTCCAGATTTGTGTATTATTTTGATGAGATCTTCTACTGTCTTTTGCACCTTATATAATTGACTCTTCTATG</genome_strand>
        <mrna_strand>TGTGATCTTCAGAGAAATTAAAAGTCTTTATTTGTTGTTATGTGTTTTACTGAATCAAATTCAAATGCAAAACCCCACCTGTTAAGTAACAGTTTAGTATATAAATTCTTGCAAACCTTTCAACTTTGTGATCATTCATTCTACTCACTATCCTCCTTCTTCTTCTTCGTTTTCGCGTGCAAATATGGATCTTCGAGAGTCAATCACCAGCCAGACTGATGTTTCTTTCATGCTTGCTAAGCATGTTTTCTCCAACGCGGTTAAAGGCGATACCAACCTGGTGCTCTCTCCTCTTTCAATTCAAATAGTTCTTGGCCTTATTGCTGCTGGCTCTAATGGACCTACTCAGAATCAGCTACTCTCTTTCCTCAAGTCCAATTCCATTGATGAACTCAACTCTCTTTATTCACATATTTCCAGTTTCGTCTTTGCTGATGGCAGCCCCAATGGAGGTCCGCGATTGTCCGTTGCTAATGGTATTTGGATCGATCAAACGCTGCCTTTGAAGCCATCTTTCAAACAGGTTGTGGATAATGTTTACAAGGCTGCTTCAGAATATGTTGATTTTCAAAACAAG.....................................................................................................................................................................................................................................................................................................................................................................GCTGCTGAAGTTGTCGATCAAGTCAATCAGTGGACTAAAATGAAGACAAATGGTCTCATCGAAGAGATTCTTGATCGTGATGCAGTGGACAACATGACGAGGCTGATCTTGGCTAATGCACTATATTTCAAAGGTGAATGGAATGAGAAGTTCGATGCTTCAGAAACAAAAGACCACGAGTTCCATCTCCTCGATGGATTGCCTGTTCGAGTACCCTTTATGACTAGCAAGAAGAAGCAGTACATAGCAGGATTTAATGGCTTTAAAGTGTTGAAGTTTCCTTATAAACAGGGCACAGATACACGTTGCTTCTCAATGTATTTCATTCTCCCAGATGCACATGATGGATTGCCCGCTTTATTTGATAAAATTAGTACAGAACCTGGATTCTTAACTCACCACGTTCCATTTAGAAAAGTCAGGGTGGGCAAGTTTCTTATTCCTAAATTCAAAATAACCTTCGAGTTTGAAGCTTCCGACATTCTAAAGGGACTTGGCCTAACGTTACCTTTCTGCGGTGGTGGTCTCACTGAGATGGTTGATTCCACTTTACCTGAGAATCCATCTGTTTCAAAAGTTTTTCACAAGTCTTTCATTGAGATAAATGAGGAAGGCACCGAAGCTGCAGCTGTTACAGCTGGTGTAATAATGACCACGTCTCTTAGAATTGAGAAAGAAATCGACTTTGTTGCTGACCATCCATTCCTGTTCCTTATAAGAGACGACGCTACTGGTGTTGTGTTGTTCATAGGGAGCGTGCTGAATCCTCTTTCTGGTTAATAAGACCATATAGCATGATTATATACAACTTTGTAAAGAAGGACAGTTCACAGTTTCCTCTCTTGTGTTTCTGTTTGATGAGAGATGCTATGTATCTAAATAACCAGTTTCCAGATTTGTGTATTATTTTGATGAGATCTTCTACTGTCTTTTGCACCTTATATATTTGACTCTTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330755" ref_strand="+" ref_description="SGN-U330755        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G47710.1 | Symbol: None | serpin, putative / serine protease inhibitor, putative, similar to phloem serpin-1 (Cucurbita maxima) GI:9937311; contains Pfam profile PF00079: Serpin (serine protease inhibitor) | chr1:17560649-17562709 FORWARD | Aliases: T2E6.22 (evalue: 9e-89, score=323) genbank/nr: gi|26224736|gb|AAN76362.1| serpin-like protein [Citrus x paradisi](evalue: 7e-97, score=356)">
      <seq>ccatatacccgtcatgggactaactcactctcgctctcatcattctcattcttattcgtctagttctttccatgatcaacgtattgatatggaaatgagtgaatcaatcaccacccaaacggatgtttctttcattctcgcaaagcatgtcttttccaaagagattaaaggcgataccaacctcgtgttctctcctctctcgattcaaatagtactaggcctgattgctgcaggctcaaaggggccaactaaggatcaactactctgtttcctcaagtccaaatccatcgatgaactcaattctctgtattctcatcttgtcaatatcgtctttgttgatggaagccccaatggaggtccacgtttgtccgttgctaatagtgtttggatcgatcaaacactgccttttaagccttcttttaaaaaggttgtggataacatttacaaggctgcttcaaattctgttgattttcagaacaaggctactgaagttgccaaccatgtcaatcattgggccaaaatgaagacaaatgatctcatcaaagagattcttcctcatggtacagtaaacaatatgacaaggctcatctttgcaaacgcgctatattttaaaggagtgtggaacgacnagttcaatgcttcagaaacaaaagactatgaattccatctcctcagaggagggtctattaaagcacctttcatgaccagtaataagaagcagtatgcagtagcctttgatggctttaaagtattggtacttcattacaaacaaggtagagacactacgcgtcatttctgtatgtatctatntttgccagatgctcgtgatggactaccagctttagtaaacaaaatcaattcagaaccaggatttttaaaccaccatgttccgtttgaaaagactaaaatgcgcaggttacttatccctaaattcaaaacacttttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="44180" stop="42532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43880" g_stop="43400" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43399" i_stop="43299" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43298" g_stop="42830" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="949" r_length="468" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-U330755" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>950</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43880" e_stop="43400"/>
          <exon e_start="43298" e_stop="42830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATATACCCGTCATGGGACTAACTCACTCTCGCTCTCATCATTCTCATTCTTATTCGTCTAGTTCTTTCCATGATCAACGTATTGATATGGAAATGAGTGAATCAATCACCACCCAAACGGGTGTTTCTTTCATTCTCGCAAAGCATGTCTTTTCCAAAGAGATTAAAGGCGATACCAACCTCGTGTTCTCTCCTCTCTCGATTCAAATAGTACTAGGCCTGATTGCTGCAGGCTCAAAGGGGCCAACTAAGGATCAACTACTCTGTTTCCTCAAGTCCAAATCCATCGATGAACTCAATTCTCTGTATTCTCATCTTGTCAATATCGTCTTTGTTGATGGAAGCCCCAATGGAGGTCCACGTTTGTCCGTTGCTAATAGTGTTTGGATCGATCAAACACTGCCTTTTAAGCCTTCTTTTAAAAAGGTTGTGGATAACATTTACAAGGCTGCTTCAAATTCTGTTGATTTTCAGAACAAGGTAGGCCTTTTTGTAATTTGTTTCATTGAAATTCCACTTTGTTAAGTTAAGCATAATGCTGATTCTGTCGTAAAATCTGTTTGTTTTACTAATTGATTAAGGCTACTGAAGTTGCCAACCATGTCAATCATTGGGCCAAAATGAAGACAAATGATCTCATCAAAGAGATTCTTCCTCATGGTACAGTAAACAATATGACAAGGCTCATCTTTGCAAACGCGCTATATTTTAAAGGAGTGTGGAACGACAAGTTCAATGCTTCAGAAACAAAAGACTATGAATTCCATCTCCTCAGAGGAGGGTCTATTAAAGCACCTTTCATGACCAGTAATAAGAAGCAGTATGCAGTAGCCTTTGATGGCTTTAAAGTATTGGTACTTCATTACAAACAAGGTAGAGACACTACGCGTCATTTCTGTATGTATCTATTTTTGCCAGATGCTCGTGATGGACTACCAGCTTTAGTAGACAAAATCAATTCAGAACCAGGATTTTTAAACCACCATGTTCCGTTTGAAAAGACTAAAATGCGCAAGTTACTTATCCCTAAATTCAAAACAACTTTTGGTT</genome_strand>
        <mrna_strand>CCATATACCCGTCATGGGACTAACTCACTCTCGCTCTCATCATTCTCATTCTTATTCGTCTAGTTCTTTCCATGATCAACGTATTGATATGGAAATGAGTGAATCAATCACCACCCAAACGGATGTTTCTTTCATTCTCGCAAAGCATGTCTTTTCCAAAGAGATTAAAGGCGATACCAACCTCGTGTTCTCTCCTCTCTCGATTCAAATAGTACTAGGCCTGATTGCTGCAGGCTCAAAGGGGCCAACTAAGGATCAACTACTCTGTTTCCTCAAGTCCAAATCCATCGATGAACTCAATTCTCTGTATTCTCATCTTGTCAATATCGTCTTTGTTGATGGAAGCCCCAATGGAGGTCCACGTTTGTCCGTTGCTAATAGTGTTTGGATCGATCAAACACTGCCTTTTAAGCCTTCTTTTAAAAAGGTTGTGGATAACATTTACAAGGCTGCTTCAAATTCTGTTGATTTTCAGAACAAG.....................................................................................................GCTACTGAAGTTGCCAACCATGTCAATCATTGGGCCAAAATGAAGACAAATGATCTCATCAAAGAGATTCTTCCTCATGGTACAGTAAACAATATGACAAGGCTCATCTTTGCAAACGCGCTATATTTTAAAGGAGTGTGGAACGACNAGTTCAATGCTTCAGAAACAAAAGACTATGAATTCCATCTCCTCAGAGGAGGGTCTATTAAAGCACCTTTCATGACCAGTAATAAGAAGCAGTATGCAGTAGCCTTTGATGGCTTTAAAGTATTGGTACTTCATTACAAACAAGGTAGAGACACTACGCGTCATTTCTGTATGTATCTATNTTTGCCAGATGCTCGTGATGGACTACCAGCTTTAGTAAACAAAATCAATTCAGAACCAGGATTTTTAAACCACCATGTTCCGTTTGAAAAGACTAAAATGCGCAGGTTACTTATCCCTAAATTCAAAAC-ACTTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327209" ref_strand="+" ref_description="SGN-U327209        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT1G69850.1 | Symbol: None | nitrate transporter (NTL1), identical to nitrate transporter (NTL1) GI:3377517 (Arabidopsis thaliana) | chr1:26300339-26304109 REVERSE | Aliases: T17F3.12, T17F3_12 (evalue: 2e-50, score=196) genbank/nr: TGF-beta(evalue: 2e-57, score=225)">
      <seq>gtttggcttagcaaaagagaagcttacaatctaaatggggatttgcagaaatgtcaagactgaagaaaagcaacttcaaaagaaggggggaactagagcagctctttttgtctatgttgtggcgggaatcgataccatggcttttatttcaaagggtgtgagcctggtgacttacttctctgggtatatgaacttcagcttaacgaaatctgccaacactgtgacaaacttcatgggaacagcgtttttgctctcattatttggagcgtttctctcagatacttacttctccagattcaagacttgtgtcctatttagcatcattcaagttttgggatttgcactgctaggagttcaagcgcatttcagtcaactgagaccatttccctgcaaggatgtacctttaagccaaaacgatcaatgtgaatctgcagatgcaggccaattggcaatcttgtatggaggtgtttatctggtagcacttggaaacagtggagtcaaagcggctttgccatcattaggtgctgatcaatttgatgaaaagggtcccaaaggggctgctaagctatcaagttacttcaattggctactgttcttcatcaccatcggagccatgcttggagttacattgtttgtttggataggtgacaatcagggatgggattggtcatttggtatctgttctgtagcaattggtttgtcaaccctactcttgaccatgggaaaacagttttacagaaacaatgttcctaaaggtagccctctgatgcgtatttcgcaggttcttgttgcagcttttagaaacagaaatctcccactaccacaaaacaaagaagatttacatcagatcagaagtgaagaggctgaaaatggaatagagattattcaaaggactgatcaattcaaatgcttggacagggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="52715" stop="55247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53015" g_stop="53051" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53052" i_stop="53164" i_length="113">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53165" g_stop="53243" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="116" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53244" i_stop="53952" i_length="709">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53953" g_stop="54170" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="334" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54171" i_stop="54272" i_length="102">
            <donor d_prob="0.002" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54273" g_stop="54844" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="906" r_length="572" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54845" i_stop="54930" i_length="86">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54931" g_stop="54947" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="907" r_stop="923" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-U327209" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>923</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53015" e_stop="53051"/>
          <exon e_start="53165" e_stop="53243"/>
          <exon e_start="53953" e_stop="54170"/>
          <exon e_start="54273" e_stop="54844"/>
          <exon e_start="54931" e_stop="54947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGCTTAGCAAAAGAGAAGCTTACAATCTAAATGGTAAGTTAAATTAGCAATTATATGTTTTTAGAATATGAAGTATTAGTATTTTTTCCAAAGTTAAGAAATGTTTGGCTAAAATATAAATAGTTTTATTTTGATAATTGTTGCAGGGGATTTGCAGAAATGTCAAGACTGAAGAAAAGCAACTTCAAAAGAAGGGGGGAACTAGAGCAGCTCTTTTTGTCTATGGTAAGCATATTTCAAGTATATAATTGTTTAACTCTCTTATGCTTATATATGGAATACTACGGGCGGAGCCACCTTAGACGAAGGATGATCTGGTGAGATTAAATGTCAGGGGAACTTTTATATTGTAGTGGTCAGTTTTGAAACTGTAAAGATATAGCACATGGGTTTAACTTAACCTCAATTGAAGCGGTAATATAGCATGCTTTGAGTTGAAGGTTTGAAACTATAAAGATATAACATATGGACTTAACCCCAATTAATACTGCAAAGATATAACATATGAATTTGTGTGTGAACCTCACATGTATTCTGAGTAAATTGATTGAGACATGTATTCTAAGTAAATTGGTTGAGGTTGGTTGATTGACCGAACCTCGTAAAATTTGTCTCATTTGGTGTGTTTCTCGTTTGTCTTCTTGCTCATGGTCTTTCGAAATTTGCTTTGCTAGTTTACGCATTATACCTACTTATTTCGGCCCTAACAAATTGGGTGTAAAGATATGACGCCTAATTCGACCCCCAATAACTAGCTCATTAGGGAAGATTTGTCCAAGTCCATATAAGGACCCAATAACTAGCTCATGAGGGAAGATTGTCCCCATCCCTCTACCAATGTGAGACTTCTTAACCGAAACCACTAGTAATAAATCCTGACTCTGCCACTGATTTTAACTATGGAGTTTTGATATTCTGATGTCTGATTATGCAGTTGTGGCGGGAATCGATACCATGGCTTTTATTTCAAAGGGTGTGAGCCTGGTGACTTACTTCTCTGGGTATATGAACTTCAGCTTAACGAAATCTGCCAACACTGTGACAAACTTCATGGGAACAGCGTTTTTGCTCTCATTATTTGGAGCGTTTCTCTCAGATACTTACTTCTCCAGATTCAAGACTTGTGTCCTATTTAGCATCATTCAAGTTTTGGTACTTGTTTATTTATACATCTTCGCTATGAAAGAGAAAAACATATATTTCAAAGGTCCATGCAGGATCAAGAATTGACTTTGATTATTCTTTCAATGTTAGGGATTTGCACTGCTAGGAGTTCAAGCGCATTTCAGTCAACTGAGACCATTTCCCTGCAAGGATGTACCTTTAAGCCAAAACGATCAATGTGAATCTGCAGATGCAGGCCAATTGGCAATCTTGTATGGAGGTGTTTATCTGGTAGCACTTGGAAACAGTGGAGTCAAAGCGGCTTTGCCATCATTAGGTGCTGATCAATTTGATGAAAAGGGTCCCAAAGGGGCTGCTAAGCTATCAAGTTACTTCAATTGGCTACTGTTCTTCATCACCATCGGAGCCATGCTTGGAGTTACATTGTTTGTTTGGATAGGTGACAATCAGGGATGGGATTGGTCATTTGGTATCTGTTCTGTAGCAATTGGTTTGTCAACCCTACTCTTGACCATGGGAAAACAGTTTTACAGAAACAATGTTCCTAAAGGTAGCCCTCTGATGCGTATTTCGCAGGTTCTTGTTGCAGCTTTTAGAAACAGAAATCTCCCACTACCACAAAACAATGAAGATTTACATCAGATCAGAAGTGAAGAGGCTGAAAATGGAATAGAGATTATTCAAAGGACTGATCAATTCAAGTATTTAATAACACCTTTTTTTCGTTTCAGTTTCCTGTTGACATGTACGTTGCGTTGCTTAACCAAATTTTCCACAATATTTACAGATGCTTGGACAGGGCAG</genome_strand>
        <mrna_strand>GTTTGGCTTAGCAAAAGAGAAGCTTACAATCTAAATG.................................................................................................................GGGATTTGCAGAAATGTCAAGACTGAAGAAAAGCAACTTCAAAAGAAGGGGGGAACTAGAGCAGCTCTTTTTGTCTATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGCGGGAATCGATACCATGGCTTTTATTTCAAAGGGTGTGAGCCTGGTGACTTACTTCTCTGGGTATATGAACTTCAGCTTAACGAAATCTGCCAACACTGTGACAAACTTCATGGGAACAGCGTTTTTGCTCTCATTATTTGGAGCGTTTCTCTCAGATACTTACTTCTCCAGATTCAAGACTTGTGTCCTATTTAGCATCATTCAAGTTTTG......................................................................................................GGATTTGCACTGCTAGGAGTTCAAGCGCATTTCAGTCAACTGAGACCATTTCCCTGCAAGGATGTACCTTTAAGCCAAAACGATCAATGTGAATCTGCAGATGCAGGCCAATTGGCAATCTTGTATGGAGGTGTTTATCTGGTAGCACTTGGAAACAGTGGAGTCAAAGCGGCTTTGCCATCATTAGGTGCTGATCAATTTGATGAAAAGGGTCCCAAAGGGGCTGCTAAGCTATCAAGTTACTTCAATTGGCTACTGTTCTTCATCACCATCGGAGCCATGCTTGGAGTTACATTGTTTGTTTGGATAGGTGACAATCAGGGATGGGATTGGTCATTTGGTATCTGTTCTGTAGCAATTGGTTTGTCAACCCTACTCTTGACCATGGGAAAACAGTTTTACAGAAACAATGTTCCTAAAGGTAGCCCTCTGATGCGTATTTCGCAGGTTCTTGTTGCAGCTTTTAGAAACAGAAATCTCCCACTACCACAAAACAAAGAAGATTTACATCAGATCAGAAGTGAAGAGGCTGAAAATGGAATAGAGATTATTCAAAGGACTGATCAATTCAA......................................................................................ATGCTTGGACAGGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344854" ref_strand="+" ref_description="SGN-U344854        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G27040.1 | Symbol: None | nitrate transporter, putative, contains Pfam profile: PF00854 POT family; similar to nitrate transporter (NTL1) GI:3377517 (Arabidopsis thaliana) | chr1:9386771-9390029 REVERSE | Aliases: T7N9.10, T7N9_10 (evalue: 3e-54, score=209) genbank/nr: gi|34909514|ref|NP_916104.1| putative nitrate transporter [Oryza sativa (japonica cultivar-group)] gi|14209546|dbj|BAB56042.1| putative nitrate transporter [Oryza sativa (japonica cultivar-group)](evalue: 4e-57, score=224)">
      <seq>gcctttgtactatctcacaagttgaagaaacaaagattgtagtaagaatgctcccaattatactgagcactgtcttcatgaacacttgcatggctcaactccagactttcactatccaacaaagcatgacaatgaacagaaaaatccgaaactttgaaatcccagggccttccatacctgtaattcctcaagtattccaactcatcatgatcccagtctatgatcgtatctttgttccgatagcaagaaagttcacagggatcccttctggtattcgacaactgcaacgtataggtgttggactagtattttcagtagtatctatggcagtggctgcagttgtagaaagtcacagaaaatcagttgccattgagcataacatggttgactcatccagtcagatacctatgagtgtgttctggcttggatttcaatttgtaatattttccatagctgaagtacttacattgatagggctgttggatttcttctacgcagagagcacatcaggcatgaaatcactgagtatggcgaatacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="54702" stop="55842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55002" g_stop="55542" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-U344854" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55002" e_stop="55542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTGTACTATCTCACAAGTTGAAGAAACAAAGATTGTAGTAAGAATGCTCCCAATTATACTGAGCACTGTCTTCATGAACACTTGCATGGCTCAACTCCAGACTTTCACTATCCAACAAAGCATGACAATGAACAGAAAAATCCGAAACTTTGAAATCCCAGGGCCTTCCATACCTGTAATTCCTCAAGTATTCCAACTCATCATGATCCCAGTCTATGATCGTATCTTTGTTCCGATAGCAAGAAAGTTCACAGGGATCCCTTCTGGTATTCGACAACTGCAACGTATAGGTGTTGGACTAGTATTTTCAGTAGTATCTATGGCAGTGGCTGCAGTTGTAGAAAGTCACAGAAAATCAGTTGCCATTGAGCATAACATGGTTGACTCATCCAGTCAGATACCTATGAGTGTGTTCTGGCTTGGATTTCAATTTGTAATATTTTCCATAGCTGAAGTACTTACATTGATAGGGCTGTTGGATTTCTTCTACGCAGAGAGCACATCAGGCATGAAATCACTGAGTATGGCGATTACATG</genome_strand>
        <mrna_strand>GCCTTTGTACTATCTCACAAGTTGAAGAAACAAAGATTGTAGTAAGAATGCTCCCAATTATACTGAGCACTGTCTTCATGAACACTTGCATGGCTCAACTCCAGACTTTCACTATCCAACAAAGCATGACAATGAACAGAAAAATCCGAAACTTTGAAATCCCAGGGCCTTCCATACCTGTAATTCCTCAAGTATTCCAACTCATCATGATCCCAGTCTATGATCGTATCTTTGTTCCGATAGCAAGAAAGTTCACAGGGATCCCTTCTGGTATTCGACAACTGCAACGTATAGGTGTTGGACTAGTATTTTCAGTAGTATCTATGGCAGTGGCTGCAGTTGTAGAAAGTCACAGAAAATCAGTTGCCATTGAGCATAACATGGTTGACTCATCCAGTCAGATACCTATGAGTGTGTTCTGGCTTGGATTTCAATTTGTAATATTTTCCATAGCTGAAGTACTTACATTGATAGGGCTGTTGGATTTCTTCTACGCAGAGAGCACATCAGGCATGAAATCACTGAGTATGGCGAATACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324492" ref_strand="+" ref_description="SGN-U324492        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:17345354-17347242 FORWARD | Aliases: T3F24.7, T3F24_7(evalue: 6e-38, score=154) genbank/nr: conserved(evalue: 6e-43, score=177)">
      <seq>tcagagactgacaatgatccatatcctttcttcttcttctactactactactacttttctcatactctttctggtccttttcactctatctccatttccagtttcgattgccacttcatctaccatacctttcaacatctcccacttcctttatccaagaatcaactacgaggaatatccccaatcttcacctaatcctccttcatttctagaggacgtgttaaaggggattgctgagcgagagaaatgggatttgcaggacttgagagtttccaagttggatgtgaagaaatcaaagtttgggactttgaggaggtatgagtttcgggtcagaattgggaagacggaattcgtattcatgatggcagatgaagtatctcagtggaaaggccttcactttcctaacaagaatgaatccgacttcgagtctttggtcaaagagattggttccaaagccactcttgatgtcctaaaaatccaagggccattcgaattatatgctactggagatgattacctgtccttgaccttacccctgaactcttcttatactgggttgaaaaagatccttgttgatgagggcatcactgtagaagttaaaggtgctgatgaaatatcaatgttcaacatctctgatttgcttaaattagtaaatggaagcatgttgaccaagtcaggaagcggtcaatttagatatatgttgcaatcgtcctgcataccactacttcccatacatgtaaagggacctgcttcagtacttgcctatatcaccaaaaaccccgacttaagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="63371" stop="60320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63071" g_stop="62858" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62857" i_stop="62520" i_length="338">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62519" g_stop="62199" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="535" r_length="321" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62198" i_stop="60878" i_length="1321">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60877" g_stop="60620" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="793" r_length="258" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-U324492" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63071" e_stop="62858"/>
          <exon e_start="62519" e_stop="62199"/>
          <exon e_start="60877" e_stop="60620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGATTGACAATGATCCATATCCTTTCTTCTTCTTCTACTACTACTACTACTTTTCTCATACTCTTTTTGGTCCTTTTCACTCTATCTCCATTTCCAGTTTCGATTGCCACTTCATCTACCATACCTTTCAACATCTCCCACTTCCTTTATCCAAGAATCAACTACGAGGAATATCCCCAATCTTCACCTAATCCTCCTTCATTTCTAGAGGTTTTGTTCAATTTCCTAACTGGGTTTTTCCTAATTACTGTTATTGTTCTGATTCTCTAATGGGTTTTGCCTATTTTCTGTTATTTGCTCTGTTTCTCTAATGAGGTTGGCCTAATTACTGTTATTGGTTCTGATTCTCTGATTGGGTTTGCCTAATTCCTGTTATTTGTGCTGTTTCTCTAACGGGGTTTGCCTAATTGTTGTTAATTTTTCTGATTCTTCAATGAGTTTTGCTTTAATTACTGCTATTTGTTGTGTTTCTCTAATGGGTTTTGCTTAAAGTTCTGTTTTTTGTTCTGTTTCTCTTATTTATGGTTCTATTTGTTTATGTTGTCCAGGACGTGTTAAAGGGGATTGCTGAGCGAGAGAAATGGGATTTGCAGGACTTGAGAGTTTCCAAGTTGGATGTGAAGAAATCAAAGTTTGGGACTTTGAGGAGGTATGAGTTTCGGGTCAGAATTGGGAAGACGGAATTCGTATTCATGATGGCAGATGAAGTATCTCAGTGGAAAGGCCTTCACTTTCCTAACAAGAATGAATCCGACTTCGAGTCTTTGGTCAAAGAGATTGGTTCCAAAGCCACTCTTGATGTTCTAAAAATCCAAGGGCCATTCGAATTATATGCTACTGGAGATGATTACCTGTCCTTGACCTTACCCGTATGTTCCCCAAATCCTTTAATATTGCTTTTGTTTGTTGCAGTACATTTTGCAAGTTACACCAGATGTTTTTTCTGTAGATGGTCTTTGCTTCCAATCTAATTTTGTTTACTGAGCTGCATTTAAGTCTTGGATTTGGATATAATTGGCTGCATACACCTGGAAGGAGTTCTGTTGCATCCACATCAGCTCGTGTTTTATGCATGTAGTTGAAATTTTCTAAATACATATGCACAACAAGGCAGCATCCGTTGTCACAGAGAGTAGTGTGTAGCAGCTTTATCTATTTAGTCGATTTTTTTTTAAATGTATACATGCACCAAGGTTTCACCCGTTGTCATAAAGGAGTAGCGGGTAGCACCCAGTTCAGTTGTAGTTCTATGTGTGTAATATAAAAATGTGAACTTGCACCCACTTTTAAGAAAGGAGTGGTGGTACTTAACACTCGCTGACTTGAAATCACAGATCCACCTCAGATTGGTTGCAAATATTTACATTGTATTGTAATTCAACTGTGGAACTATCCTGAAGATGTAATATTTGGTTGTTGATCCTTATGTTGGAGTGCCTGGTGAAATAGACAGTTAAATGAAGCAAATCTTCGCCCATGACACTAGTCCCCACCAGGCTTATTTTCTGCATTTGTTAAATCAAATCCACCATGTAGTTTTTCAAGACTCTTTGCGTATCAAGGTATTATAGGCCAAAACTTCGGAAGTACTTAAGTTCCGCATATTTATGGAGTGCTAACCCACTTGATGTTTCAGTTGACTTATTTGATCTCTAGAAAGGAAGCTGCAATTATATCGGCAGAAGTTGTTATATGCTGATGCAGTTTACTCCAAAATAGAGCTGCTGCATATGCAAGGAACTTCTTTAGGTGCAGCTTTTCTAGAACTTCGACTCCTCCACAGGGAGAGAACATCAAATTAGTTGTCGCATTGTATATTTGTTCAATGCATTGCCTGTGTATTAGGGAGAAAATGTTAAACTAGCAATTATGTTCTCCATGGAGGATCTTCTATGTGTTATGTTTCTCTGTGCATATGAATATTATCATGTTGTGAAAATCTTTTTCTCTGTGCCTGGACATGTTGACATATGTAGCCTGTTTGGATGTTGATGTTTGACATATTTTCTTTAAATGGATACAGATTTGTGCTTTGATCTCTTCTTGCTAGTTTGCAGCTAGTTGCTTTAATGTGATCCGTCATGAGTTGATGCATTATGTGTTATACTCTAGTACTGGAAGTGAGATTTTACTAATCATTATGTGTTTTCGTGGTAGGCTAACACATTTTGTTAATTACCTTTTTAACAGCTGAACTCTTCTTATACTGGGTTGAAAAAGATCCTTGTTGATGAGGGCATCACTGTAGAAGTTAAAGGTGCTGATGAAATATCAATGTTCAACATCTCTGATTTGCTTAAATTAGTAAATGGAAGCATGTTGACCAAGTCAGGAAGCGGTCAATATAGATATATGTTGCAATCGTCCTGCATACCACTACTTCCCGTACATGTAAAGGGACCTGCTTCAGTTCTTGCCTATATCACCAGAAACCCTGACTTAAGAATT</genome_strand>
        <mrna_strand>TCAGAGACTGACAATGATCCATATCCTTTCTTCTTCTTCTACTACTACTACTACTTTTCTCATACTCTTTCTGGTCCTTTTCACTCTATCTCCATTTCCAGTTTCGATTGCCACTTCATCTACCATACCTTTCAACATCTCCCACTTCCTTTATCCAAGAATCAACTACGAGGAATATCCCCAATCTTCACCTAATCCTCCTTCATTTCTAGAG..................................................................................................................................................................................................................................................................................................................................................GACGTGTTAAAGGGGATTGCTGAGCGAGAGAAATGGGATTTGCAGGACTTGAGAGTTTCCAAGTTGGATGTGAAGAAATCAAAGTTTGGGACTTTGAGGAGGTATGAGTTTCGGGTCAGAATTGGGAAGACGGAATTCGTATTCATGATGGCAGATGAAGTATCTCAGTGGAAAGGCCTTCACTTTCCTAACAAGAATGAATCCGACTTCGAGTCTTTGGTCAAAGAGATTGGTTCCAAAGCCACTCTTGATGTCCTAAAAATCCAAGGGCCATTCGAATTATATGCTACTGGAGATGATTACCTGTCCTTGACCTTACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACTCTTCTTATACTGGGTTGAAAAAGATCCTTGTTGATGAGGGCATCACTGTAGAAGTTAAAGGTGCTGATGAAATATCAATGTTCAACATCTCTGATTTGCTTAAATTAGTAAATGGAAGCATGTTGACCAAGTCAGGAAGCGGTCAATTTAGATATATGTTGCAATCGTCCTGCATACCACTACTTCCCATACATGTAAAGGGACCTGCTTCAGTACTTGCCTATATCACCAAAAACCCCGACTTAAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317370" ref_strand="+" ref_description="SGN-U317370        Tomato 200607 #1 [21 ESTs aligned] arabidopsis/peptide: | Symbol: None | chloroplast thylakoidal processing peptidase, identical to chloroplast thylakoidal processing peptidase (Arabidopsis thaliana) GI:2769566; contains Pfam profile PF00461: Signal peptidase I; non-consensus CG acceptor site at the intron:exon 8 boundary | chr2:12979954-12982574 FORWARD | Aliases: T6B20.20, T6B20_20(evalue: 5e-102, score=369) genbank/nr: gi|30684587|ref|NP_180603.2| signal peptidase I -related [Arabidopsis thaliana] gi|2769566|emb|CAA71502.1| chloroplast thylakoidal processing peptidase [Arabidopsis thaliana] gi|22135950|gb|AAM91557.1| putative signal peptidase I [Arabidopsis thaliana](evalue: 4e-100, score=369)">
      <seq>aataccctccgctttttctacggcgagttctcgccggccgtcgtcaagagcaaaatcatcgtttcccttttccgttcacttaatacccttttgaaaaaccctaattttgatccgattctttcagctcaccgttcaattctttacctcattccgttgacctaacttttcaattcaccgatttcttttccaattctctgatttcatcaatcccgatggcctttcttcgcttcttgtaaggtttttacaactctccccgttagtttccgaacccacaattctctacatcttgctcggtttattacaatttgtagttatggcgatccggttcacagtcacctattccggctacttagcccaaaacctagcttcatcggcttcttcgaaagtcgttggttgcaggttttttcacgaatgtactgtccgatctcgaattttccatccaccagctcaaaaacccgaatcaaattgctccgatttccgccggacaaaaccgaaaccacggccggtgagtaatacttactcttcccggtcgttttcgtccagttcagcgtgttcttcgtttgcttctgagctttttggcggaagttcgaattcacctttggttgttggattgatttcgctgatgaggtcctcttctgggtcttgtaccatgaatgcgttggggatttcgccattgaaagcgtcttcgtttcttccatttcttcagggctcgaaatggcttccttgtaatgagcccagtattgggtcctcggggagttccgaggtggataatggtggaactgaaactaggtgtagtgaaagttctgttcggtcggagcctttgtccaatgaaatgaaggtttccaagagccgttgggtgtcaaagttgttgaacatctgttctgatgatgcaaaggctgcttttacagctttgagtgttagcataatgtttaagtcatctttggctgagccaagatcaattccatctgcttccatgtcccctactctggataagggtgaccgtataatggctgaaaaggtttcatatttttttcggcaacctgacatttcagacatagtgatatttaaagcaccaccaatccttcagcatatttttggttgtagtgctggagacgtcttcattaaaagagttgttgcattagctggggattatattgaagtgcgtgagggtaaactgtttttgaatggtgttgctcaagatgaagatttcattttagagcctattgcctatgaaatggaaccagtgcttgttcctgaaggctgtgtgttcgtgatgggggacaatcgcaataatagctatgattctcacaactggggtccacttcccgttgcaaacattgtcggtaggtcagtattcagatattggcccccatccagggtgtcggacaccctgcatggatcagtaatggagaagagagtagttgcagtttcttgaccctgtctaaagatggaggtgttttactgacttctttcatctctttattcttttactgatcagtctctgccttctggctcattggatcagctgtataatctttcccatcccagctgccgttgttcgatccacaatttgaacaacttggaggatggattatcttaatccgcctgtgtgattgtttttctcaagcggccctatattgggtttctgcaattttatgtagtgcaaagtctcagagataaagctgatcattggaattagcaaactcagttgtcatgaagaactggaacattttccctttctcgtaaaccgtggagtggagaccagactagggagacacgatggtgtatccaacaaagtttcagctgtaaatcgtgacacagtattctgaggctgaacatgtttaatatttgcttgtattcctgctgaatgtagtgaattatgaagtatggtctctatataacaattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67449" stop="63574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67149" g_stop="66132" g_length="1018"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1018" r_length="1018" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66131" i_stop="65387" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65386" g_stop="65318" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1019" r_stop="1087" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65317" i_stop="65230" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65229" g_stop="65158" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1088" r_stop="1159" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65157" i_stop="65075" i_length="83">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65074" g_stop="64988" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1160" r_stop="1246" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64987" i_stop="64901" i_length="87">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64900" g_stop="64833" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1247" r_stop="1314" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64832" i_stop="64468" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64467" g_stop="63874" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1315" r_stop="1910" r_length="596" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-U317370" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1908</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67149" e_stop="66132"/>
          <exon e_start="65386" e_stop="65318"/>
          <exon e_start="65229" e_stop="65158"/>
          <exon e_start="65074" e_stop="64988"/>
          <exon e_start="64900" e_stop="64833"/>
          <exon e_start="64467" e_stop="63874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCCTCCGCTTTTTCTACGGCGAGTTCTCGCCGGCCGTCGTCAAGAGCAAAATCATCGTTTCCCTTTTCCGTTCACTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCATTGAAAGCGTCTTCGTTTCTTCCATTTCTTCAGGGCTCGAAATGGCTTCCTTGTAATGAGCCCAGTATTGGGTCCTCGGGGAGTTCCGAGGTGGATAAAGGTGGAACTGAAACTAGGTGTAGTGAAAGTTCTGTTCGGTCGGAGCCTTTGTCCAATGAAATGAAGGTTTCCAAGAGCCGTTGGGTGTCAAAGTTGTTGAACATCTGTTCTGATGATGCAAAGGCTGCTTTTACAGCTTTGAGTGTTAGCATAATGTTTAAGTCATCTTTGGCTGAGCCAAGATCAATTCCATCTGCTTCCATGTCCCCTACTCTGGATAAGGGTGACCGTATAATGGCTGAAAAGGTATATTTAATCCTCCCTTTTTTCTGAAGTTTGTTGATATAGCTTGAAGACGTAGAGATAATGGCAAGTAGCTTGATGAGTATATTACTGTTTTTCATTGGCAAATAACTGGCCTGAATATGTGATTGATGCTTACCATGATATTTGATGTCTTGAAAATCTAGTATTTTCCTATTCAGTTTTCAGAGTCTTACTAGAATTATTTGATCTGATGACACTTTTTAACTGAAATATGAAACACAGTCAATTGGTTGATTGAATATGTTATCCAGCCTGAGCCTAATTGCTTACTAGTTTATTTGGTCTATCAATGTTTTTGCAAAAACATATTTTCGTTTCCTTGCACCATAATAATTGTTTTAGACGGTTGATGTCTTCCTTCTCCATTTTTGTTGTCAATGATGTTGTTTGGACTTCAGAAATGTTGGATGAATGCCCATTGTATTATGACAAATTCAATCTTTTATTGAGCTGATTTCTTTAATTAAGAAGTCTGTCTTGCATCCAACTTTGTTGAGAGTACAAGTAGTGCTAAGCAATCAATTGTCCTTATTTAGGAAAGAAAGCTCATCATGCTTATGATTAGTTCTATCTTTATACCTTGATTCCATTCATGCAACATACGCGTTTACTGCAATTGTTAGTGAAACTTTGATTGACGTGTAGGGATTCTATACAATAAAGATTTTTTATGTCCTGATTGTTTACACTTCTTACTGATTATTATGCTTCCTGTTGCATTCAGGTTTCATATTTTTTTCGGCAACCTGACATTTCAGACATAGTGATATTTAAAGCACCACCAATCCTTCAGGTACGCCAGAGTTGTCTAGATTGCTAGTAGTGTGAGATTTTTACTCTGCACATGCATTTATCAACAGGCAGTTTTCTGTATCTTGCAGCATATTTTTGGTTGTAGTGCTGGAGACGTCTTCATTAAAAGAGTTGTTGCATTAGCTGGGGATTATATTGAAGTAAGTTCTTCTTCTCTTACCATGTTTTGCAAGTAGCTGTGTCAAATGTGCGATATCTTATTCAAGGATTACACTTTATGCAGGTGCGTGAGGGTAAACTGTTTTTGAATGGTGTTGCTCAAGATGAAGATTTCATTTTAGAGCCTATTGCGTATGAAATGGAACCAGTGGTAAAGCATATATTTTGTCTATATGCAAGGATGTGTATATGATGTGATCTCTTCAAAGATCTAATACACTGCTTTGTCATTTTATAGCTTGTTCCTGAAGGCTGTGTGTTCGTGATGGGGGACAATCGCAATAATAGCTATGATTCTCACAACTGGTGAGAGCATTGAAAGATCTAATTTATTTTTTAAATAGAGAAGTAACAATTCACTGCTGAGGAAGAGCTGCTGTAGTAATGTTCAACCTTGTCTTCTGCCTATGCCCTCCCCTGAAACCAAGCCTTCCATTAAATACATTTAAAACATTCGCTTGTTTGTGAGTGTGGTAGTGCCTTTGGGATCACTTGTCCATGGTGGGTTAGGAAGCTGAAACAATAAGAACCAAGAAGCAGTGGTATCTCATGTTCTCCACGGAAACCCTTCATAGTTGGAATTACAAAAAAGAACCCTTAAATCATTTGTGTTCTTGTTTGTTTATCTCTATGCAGAATTTTGATCTCATCTTTACTGTCTAATTTCTCAGGGGTCCACTTCCCGTTGCAAACATTGTCGGTAGGTCAGTATTCAGATATTGGCCCCCATCCAGGGTGTCGGACACCCTGCATGGATCAGTAATGGAGAAGAGAGTAGTTGCAGTTTCTTGACCCTGTCT-AAGATGGAGGTGTTCTACTGACTTCTTTCATCTCTTTATTCTTTTACTGATCATTCTCTGCCTTCTGGCTCATTGGATCAGCTGTATAATCTTTCCCATCCCAGCTGCCGTTGTTCGATCCACAATTTGAACAACTTTGAGGATGGATTATCTTAATCCGCCTGTGTGATTGTTTTTCTCAAGTGGCCCTATATTGGGTTTTTGCAATTTTATGTAGTGCAAAGTCTCAGAGATAAAGCTGATCATTGGAATTAGCAAACTCAGTTGTCATGAAGAACTGGAACATTTTCCCTTTCTCCTTAACCGTGGAGTGGAGACCAGACTAGGGAGACACGATGGTGTATCCAACAAAGTTTCAGCTGTAAATCGCGAC-CAATATTCTGAGGCTGAACATGTTTAATATTTGCTTGTATTCCTGCTGAATGTAGTGAATTATGAAGTATGGTCTCTATATAACAATTTTCT</genome_strand>
        <mrna_strand>AATACCCTCCGCTTTTTCTACGGCGAGTTCTCGCCGGCCGTCGTCAAGAGCAAAATCATCGTTTCCCTTTTCCGTTCACTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCATTGAAAGCGTCTTCGTTTCTTCCATTTCTTCAGGGCTCGAAATGGCTTCCTTGTAATGAGCCCAGTATTGGGTCCTCGGGGAGTTCCGAGGTGGATAATGGTGGAACTGAAACTAGGTGTAGTGAAAGTTCTGTTCGGTCGGAGCCTTTGTCCAATGAAATGAAGGTTTCCAAGAGCCGTTGGGTGTCAAAGTTGTTGAACATCTGTTCTGATGATGCAAAGGCTGCTTTTACAGCTTTGAGTGTTAGCATAATGTTTAAGTCATCTTTGGCTGAGCCAAGATCAATTCCATCTGCTTCCATGTCCCCTACTCTGGATAAGGGTGACCGTATAATGGCTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATATTTTTTTCGGCAACCTGACATTTCAGACATAGTGATATTTAAAGCACCACCAATCCTTCAG........................................................................................CATATTTTTGGTTGTAGTGCTGGAGACGTCTTCATTAAAAGAGTTGTTGCATTAGCTGGGGATTATATTGAA...................................................................................GTGCGTGAGGGTAAACTGTTTTTGAATGGTGTTGCTCAAGATGAAGATTTCATTTTAGAGCCTATTGCCTATGAAATGGAACCAGTG.......................................................................................CTTGTTCCTGAAGGCTGTGTGTTCGTGATGGGGGACAATCGCAATAATAGCTATGATTCTCACAACTG.............................................................................................................................................................................................................................................................................................................................................................................GGGTCCACTTCCCGTTGCAAACATTGTCGGTAGGTCAGTATTCAGATATTGGCCCCCATCCAGGGTGTCGGACACCCTGCATGGATCAGTAATGGAGAAGAGAGTAGTTGCAGTTTCTTGACCCTGTCTAAAGATGGAGGTGTTTTACTGACTTCTTTCATCTCTTTATTCTTTTACTGATCAGTCTCTGCCTTCTGGCTCATTGGATCAGCTGTATAATCTTTCCCATCCCAGCTGCCGTTGTTCGATCCACAATTTGAACAACTTGGAGGATGGATTATCTTAATCCGCCTGTGTGATTGTTTTTCTCAAGCGGCCCTATATTGGGTTTCTGCAATTTTATGTAGTGCAAAGTCTCAGAGATAAAGCTGATCATTGGAATTAGCAAACTCAGTTGTCATGAAGAACTGGAACATTTTCCCTTTCTCGTAAACCGTGGAGTGGAGACCAGACTAGGGAGACACGATGGTGTATCCAACAAAGTTTCAGCTGTAAATCGTGACACAGTATTCTGAGGCTGAACATGTTTAATATTTGCTTGTATTCCTGCTGAATGTAGTGAATTATGAAGTATGGTCTCTATATAACAATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336063" ref_strand="+" ref_description="SGN-U336063        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gccgtcgtcgagagcgaaatcatcgctctccttttacgttcacttaataccctattgaaaaaccctacattggatccgattctttcagatcaccgctcaattctttacctcattccagggacctaacttttcaattcaccgatttcttttccaattctctgattccatcaatcccgatggcatttcttcgcttcttgtaaggtgtttacaactctccccgctagtttccgaacccacaattctctacatcttgctcggattattacaatttgtagttatggcgatccggttcacagtcacctattccggctacttagcccaaaacctagcttcatcggcttcttcgaaagtcgtgggttgcaggttttttcacgaatgtactgtccgatctcgagttttccatccaccagctcaaaaacccgaatcaaattgctccgatttccgccggacaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67386" stop="66359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67113" g_stop="66659" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-U336063" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67113" e_stop="66659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCGTCAAGAGCAAAATCATCGTTTCCCTTTTCCGTTCACTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAAC</genome_strand>
        <mrna_strand>GCCGTCGTCGAGAGCGAAATCATCGCTCTCCTTTTACGTTCACTTAATACCCTATTGAAAAACCCTACATTGGATCCGATTCTTTCAGATCACCGCTCAATTCTTTACCTCATTCCAGGGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTCCATCAATCCCGATGGCATTTCTTCGCTTCTTGTAAGGTGTTTACAACTCTCCCCGCTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGATTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTGGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAGTTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345853" ref_strand="+" ref_description="SGN-U345853        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | ent-kaurene oxidase, putative (GA3) / cytochrome P450, identical to GA3 (Arabidopsis thaliana) GI:3342249; similar to ent-kaurene oxidase (Cucurbita maxima) GI:11934675; contains Pfam profile PF00067: Cytochrome P450 | chr5:9036046-9038399 FORWARD | Aliases: T1N24.23, T1N24_23(evalue: 2e-27, score=120) genbank/nr: gi|29468361|gb|AAO85520.1| ent-kaurene oxidase [Prunus persica](evalue: 3e-35, score=152)">
      <seq>ccctttagggacaagaacgtgtgggagagtcctgaagagtgcaagcctgaacgatttcttaacggaaagtacgatccaatggaattgcagaagacaatggcgtttggggctggaaaaagggtatgtgctggtgctcagcaagcaatgacaattagttgcacagctattgctagattgatacaagagtttgaatggagcttaaaagaaggagaagaggaaaatgttgcaacaatgggtcttactactcataaacttcacccaatgctagctcatatcaagccaagaaattaaaggggaatctttaccgtaacaggtaaatttgttgtcgtgtgatcaggaggttactggttcagaccatggaaatattctcaatcgctcatgcagaaatgttagataaaactatgaataataaactctttgtggttcggccgttttagtgcatctggctgcccaagatttgaactttctactctgtattaccagagcttgctattttgttacttttcaagttatcactatgatgataattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="89444" stop="88324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89149" g_stop="88625" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-U345853" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89149" e_stop="88625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATAGGGACAAGAACGTGTGGGAGAGTCCTGAAGAGTGGAAGCCTGAACGATTTCTTAACGGAAAGTATGATCCAATGGAATTGCAGAAGACAATGGCGTTTGGGGCTGGAAAAAGGGTATGTGCTGGTGCTCAGCAAGCAATGACAATTAGTTGCACAGCTATTGCTAGATTGATACAAGAGTTTGAATGGAGCTTAAAAGAAGGAGAAGAGAAAAATGTTGCAACAATGGGTCTTACTACTCATAAACTTCACCCGATGCTAGCTCATATCAAGCCAAGAAATTGAAGGGGAATATTTACCGTAACTTGGTAAATTTGTTGTCATGTGATCAGGAGGTTACTGGTTCAGACCATGGAAATATTCTC-AT-G--C--G--GAAATGTTAGATAAAACTATGAATAATAAACTCTTTGTGGTTCGGCCGTTTTAGTGCATCTGGCTGCCCAAGATTTGAACTTTCTACTCTGTATTAGCAGAGCTTGCTATTTTGTTACTTTTCAAGATATCACTATGATGATAATTTTG</genome_strand>
        <mrna_strand>CCCTTTAGGGACAAGAACGTGTGGGAGAGTCCTGAAGAGTGCAAGCCTGAACGATTTCTTAACGGAAAGTACGATCCAATGGAATTGCAGAAGACAATGGCGTTTGGGGCTGGAAAAAGGGTATGTGCTGGTGCTCAGCAAGCAATGACAATTAGTTGCACAGCTATTGCTAGATTGATACAAGAGTTTGAATGGAGCTTAAAAGAAGGAGAAGAGGAAAATGTTGCAACAATGGGTCTTACTACTCATAAACTTCACCCAATGCTAGCTCATATCAAGCCAAGAAATTAAAGGGGAATCTTTACCGTAAC-AGGTAAATTTGTTGTCGTGTGATCAGGAGGTTACTGGTTCAGACCATGGAAATATTCTCAATCGCTCATGCAGAAATGTTAGATAAAACTATGAATAATAAACTCTTTGTGGTTCGGCCGTTTTAGTGCATCTGGCTGCCCAAGATTTGAACTTTCTACTCTGTATTACCAGAGCTTGCTATTTTGTTACTTTTCAAGTTATCACTATGATGATAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332034" ref_strand="+" ref_description="SGN-U332034        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | ent-kaurene oxidase, putative (GA3) / cytochrome P450, identical to GA3 (Arabidopsis thaliana) GI:3342249; similar to ent-kaurene oxidase (Cucurbita maxima) GI:11934675; contains Pfam profile PF00067: Cytochrome P450 | chr5:9036046-9038399 FORWARD | Aliases: T1N24.23, T1N24_23(evalue: 2e-43, score=170) genbank/nr: gi|66132395|gb|AAY42951.1| kaurene oxidase [Stevia rebaudiana] (evalue: 2e-46, score=186)">
      <seq>aaattgggctgaaacttatggacctatttattccatcaaaaccggcgcaaatacaattgttgtactcagttctagtgaacttgcaaaggaggctatggtgactagatattcatccatctcaactagaaagctaacaaacgcattgagaatccttacttgtgataagagtatagtcgcgataagtgattacgatgagtttcacaagacagcgaagcgccacatactgaccagtgttctaggaccaactgctcagaaacgcttccgtatccacagggacaccttggtagaaaatgtgtcaaagcaactacatgatttggttaggactgatcctaacgaagcaattaatctaaggaagtcatttcagtcggaactttttggtttagcattgaaacaagctttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="92375" stop="90048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92075" g_stop="91985" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91984" i_stop="90744" i_length="1241">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90743" g_stop="90582" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="253" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90581" i_stop="90494" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90493" g_stop="90353" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="394" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90352" i_stop="90257" i_length="96">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90256" g_stop="90249" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="402" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-U332034" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92075" e_stop="91985"/>
          <exon e_start="90743" e_stop="90582"/>
          <exon e_start="90493" e_stop="90353"/>
          <exon e_start="90256" e_stop="90249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGGGCTGAAACTTATGGACCTATTTATTCCATCAAAACCGGCGCAAATACAATTGTTGTACTCAGTTCTAGTGAACTTGCAAAGGAGGTAATCAAAATAATCACTCTCAAACCTCTTTTCTATGTTAATAAGTAAGAAACAAGCATTGGAGTTCTAAGTTCGTCGCAAAAAGTAAACCTTTTTGGTTGTAATCCATTTTCTAGTTGCTATGTAGCTTCTTCTGTCTTAATTTTTATGATGTCAAAAGGTTTTACGTCCTACTAATTGCTGGTTTTAAGTTGTGAAATGATTCAATCTGGTATTTCAAGTTTTTCTAGTTAGAAAGATACTAAAATATGAGATGGTACACTCGTAATAAAAGTTTAGTTAAAATGGTATGCAGAAAGAGGAGAGTGGCAACAGAGAAATGTAGACAAATTACGTGGTCCTTCAGCACCACACCATTTAGTAGAGGAATTGGATATGTTTCTTTAGTAATATGTACTGAGAGTCAGGAATATTTTACTTTAGTATGACTGGACCAGGGGATAAAACTTATAATCTGACTAATGCTGTATATGAGCCCCAGATTTTCCTGATAGCTGCAGTTGCATTGGTTTCAGTATTATATAGGATCGAACTTAAAGTACGTGTCCCTGCCTCTCGATGATCACTAAATGGATTGTATTGCCTAGTTCCTCTTTGTTGAGACTAGACCATACTACAAGGTGAAGCAGTTGGTGATTTAGACAACTGCTATCTCCATATTATATCCCTGGATTGTATGTTGGTTGTTCTCTGGTAAGACCTCAACTGTATAATTGGAAAATCTTCGGTTGTTGAGGTTCTGAATCACCGTACTAGATATGATAAAGTAGTGTCATGTACCACCTCAGTCGCGGCATATGTTGGCTGTGTATCAGCAAAGTTCCATTTTCACTATACAGTTGGTTTAGACTTTATAATTTTCTGATAAATATCTGAGAAAATACATAGAATATGAAGATCTTATAAACTAATGTTGAGGTAGAACGACTACTCGCACATTGTTGCACAGAGCTTAAAGTATTTACCTCCAGTTTCCTTGCAAGAGGAGAGCTTTTGCATTGTTTTAAGGTATTTAGTTCTTTATCACGTAGAATAAGCATCAACACCAAAGTAACGACTCAAATGTAACATTGACACTACTGGGGTGTCATCGATCACCAATAGCTTGAGTTATAAGCCAATATATAGAGGCATGTTTGGTGCTTATTTTTTAAATCACTGTTGTGTTATTTGTGTGCTTATCATATCTATACTCAAACACTTGATACAGATCTAAATATTGTCCTTTTTCGTCTTTTTAGGCTATGGTGACTAGATATTCATCCATCTCAACTAGAAAGCTAACAAACGCATTGAGAATCCTTACTTGTGATAAGAGTATAGTCGCGATAAGTGATTACGATGAGTTTCACAAGACAGCGAAGCGCCACATACTGACCAGTGTTCTAGGACCAACTGCTCAGGTTTGTCATTTACAAATCGACCTCCATAATTCTCTTCATTTGTTTCATCGACTCCATATCTAACAGGAAAGTGCTGCTTAATATGCAGAAACGCTTCCGTATCCACAGGGACACCTTGGTAGAAAATGTGTCAAAGCAACTACATGATTTGGTTAGGACTGATCCTAACGAAGCAGTTAATCTAAGGAAGTCATTTCAGTCGGAACTTTTTGGTTTAGCATTGAAACAAGTTAGTTTTTCAAAATTCAGTTTCATCAGTATGTTGTTATTTTGGGAACTCCTTTAATCTGCGCGATCATTTTAAAAGTTTTAACTTCATTTGCAGGCTTTGGG</genome_strand>
        <mrna_strand>AAATTGGGCTGAAACTTATGGACCTATTTATTCCATCAAAACCGGCGCAAATACAATTGTTGTACTCAGTTCTAGTGAACTTGCAAAGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGGTGACTAGATATTCATCCATCTCAACTAGAAAGCTAACAAACGCATTGAGAATCCTTACTTGTGATAAGAGTATAGTCGCGATAAGTGATTACGATGAGTTTCACAAGACAGCGAAGCGCCACATACTGACCAGTGTTCTAGGACCAACTGCTCAG........................................................................................AAACGCTTCCGTATCCACAGGGACACCTTGGTAGAAAATGTGTCAAAGCAACTACATGATTTGGTTAGGACTGATCCTAACGAAGCAATTAATCTAAGGAAGTCATTTCAGTCGGAACTTTTTGGTTTAGCATTGAAACAA................................................................................................GCTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332753" ref_strand="+" ref_description="SGN-U332753        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain | chr4:16445327-16447600 FORWARD | Aliases: F10M10.170, F10M10_170(evalue: 4e-13, score=71.6) genbank/nr: Transcriptional(evalue: 2e-33, score=145)">
      <seq>tttatttgattacttgcttaatttcacatccccagaatcttaaaaaatggggttgaaggaattttgtggggttctttagggttttagcttcaaaaatttaggtgaaaaagagaggaaatagagatgttagatgcaagaaggcctcattttcttgtgggttttaaccctttcatgaattctgaaaaattgaaaattccatcaaaattcattaaacatatggaaggaggggattctggaacaacagttctggtgggtcccagtggaaatgcttggcctgtggacttaatacagcaagatgatggtttattcttcaataatggatgggtttcatttgttaaagatcactgccttgaaacaggggattctttggttttcagatatgacggtgatttgcatttcactgtgcaagtatttgacgagagttcatgtgagaaggaggcttcttataacgctgactgcagtcaaggagcaactgacttgtacaatcttgctctgaaaaaaagagaccgaggaaactctgttttattagattgtatggttgaaggtgtaccgaagaaaatgaaaagcaccgagatcccttccgaatgcacaagtagccaggatacacatggtcttgcatctagcaaggatgggtacactccagaagatgcagtttgctcatatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="95434" stop="97458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95734" g_stop="95922" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95923" i_stop="96681" i_length="759">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96682" g_stop="97158" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="666" r_length="477" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-U332753" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95734" e_stop="95922"/>
          <exon e_start="96682" e_stop="97158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTGATTACTTGCTTAATTTCACATCCCCAGAATCTTAAAAAATGGGGTTGAAGGAATTTTGTGGGGTTCTTTAGGGTTTTAGCTTCAAAAATTTAGGTGAAAAAGAGAGGAAACAGAGATGTTAGATGCAAGAAGGCCTCATTTTCTTGTGGGTTTTAACCCTTTCATGAATTCTGAAAAATTGGTAAGCATTGGTTCACATTGCCATTAGCTTCACAACTTGTTGGTACATTCTTGTTTGTTGAATTTCTCTTTTTTGTTCCTCTATATTATGCTGGAATTATTCTTTCATCCTGTGTTGAGTTTGTTGCTTTTCTTACTGCATTTGGGCTAGTTGTTGCAAATGGGCAAAAAGGGGTTGAACAAGAATGTTCTTTTTGGATCAAAGCAACAAACTTTAGTGTAACTATAAGGACTATTCATTGGCTAATAATGCTGTTTTTGGAACAAAGCAACAAACTTTAGTGTACCCAGAATATGTTTTTCGATCAAAGCAACAAACTTTAGTGTAACTATATAGACTACTCATTGTCTAAGAATGTTGTTTTTTGAACAAAGCAGTAAACTTTAGTGCACCCAATATAGTTTGTTTTTGGATCAAAGCTGTACATTCATTCTTTAAGTTTAACAGGCTTCATAAGCTATAAAGTAAGATCTTAGCGTTCAGGAGTACAAAGGGGGGGATTGACTTAGGGCCCTGCATAGGTGTGGGACAGGCTCCATTTGAATGAGCTATGTCAGGCGTGTGATAATTTTGCAACATGGTTATTTTAAGGCAGTATTTAAGAGTTTTGTAATAGAGATCAGTATTCGTTGCTCTTCGAACGACTTACCTATGCATTTTATAATGAAGTCATTTTATTTTAAAAACAAACTCTTCTGAATAACTTTATGTTATCAACTCTTGCAATGTTTATTAATTGTTTTGATTCCTATATTGCAGAAAATTCCATCAAAATTCATTAAACATATGGAAGGAGGGGATTCTGGAACAACAGTTCTGGTGGGTCCCAGTGGAAATGCTTGGCCTGTGGACTTAATACAGCAAGATGATGGTTTATTCTTCAATAATGGATGGGTTTCATTTGTTAAAGATCACTGCCTTGAAACAGGGGATTCTTTGGTTTTCAGATATGACGGTGATTTGCATTTCACTGTGCAAGTATTTGACGAGAGTTCATGTGAGAAGGAGGCTTCTTATAATGCTGACTGCAGTCAAGGAGCAACTGACTTGTACAATCTTGCTCTGAAAAAAAGAGACCGAGGAAACTCTGTTTTATTAGATTGTATGGTTGAAGGTGTACCGAAGAAAATGAAAAGCACCGAGATCCCTTCCGAATGCACAAGTAGCCAGGATACACATGGTCTTGCATCTAGCAAGGATGGGTACACTCCAGAAGATGCAGTTTGCTCATATGCA</genome_strand>
        <mrna_strand>TTTATTTGATTACTTGCTTAATTTCACATCCCCAGAATCTTAAAAAATGGGGTTGAAGGAATTTTGTGGGGTTCTTTAGGGTTTTAGCTTCAAAAATTTAGGTGAAAAAGAGAGGAAATAGAGATGTTAGATGCAAGAAGGCCTCATTTTCTTGTGGGTTTTAACCCTTTCATGAATTCTGAAAAATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCCATCAAAATTCATTAAACATATGGAAGGAGGGGATTCTGGAACAACAGTTCTGGTGGGTCCCAGTGGAAATGCTTGGCCTGTGGACTTAATACAGCAAGATGATGGTTTATTCTTCAATAATGGATGGGTTTCATTTGTTAAAGATCACTGCCTTGAAACAGGGGATTCTTTGGTTTTCAGATATGACGGTGATTTGCATTTCACTGTGCAAGTATTTGACGAGAGTTCATGTGAGAAGGAGGCTTCTTATAACGCTGACTGCAGTCAAGGAGCAACTGACTTGTACAATCTTGCTCTGAAAAAAAGAGACCGAGGAAACTCTGTTTTATTAGATTGTATGGTTGAAGGTGTACCGAAGAAAATGAAAAGCACCGAGATCCCTTCCGAATGCACAAGTAGCCAGGATACACATGGTCTTGCATCTAGCAAGGATGGGTACACTCCAGAAGATGCAGTTTGCTCATATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321805" ref_strand="+" ref_description="SGN-U321805        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain | chr5:5959480-5961639 REVERSE | Aliases: MCM23.7, MCM23_7(evalue: 2e-09, score=61.2) genbank/nr: Transcriptional(evalue: 2e-91, score=340)">
      <seq>gaagatgcagtttgctcatatgcaggaagaaattatgctgctagttttctggatgaaatggagaatgctggagatgcattaaacagtaaagttaccattgctgtgccagctcaagcaaagataatctttagcaatccaggcaatgcttcctccgagaaagatatgtggttgcctgcacaggaagcagaaaaggttgctggtttgtttacctcaagtttgcccagctttactaaagttatgaagaggttcaacatcagtggctcatacaccctgcatatcccttaccaatttgccacggaacaccttcccaactgcaaggtgaagattttacttcataatttagaagggaaaacttggactgtgaattcaattccgactacaagagtacaaacatcacataccttttgcggagggtggttatcttttgttcgcgacaataacattgatttgggagatacctgcatttttgagcttgtccgcaagtgtgaattgcgtgtgcgtgttcttaaggcggaaaaggaaggaagtgattacagtagtaaggtagttgatgaaggactagttattgattatgcaaaaaattctggatgtaagtccaggaaagtgggatcgagttctgatcaagcgaaggttatgacatatgataaaaaaggatctactcctgaaaaagagaaacatggcgatatgttgaagaatcatcagctccattctcagtcaaagattagcagtggagattcagctatcaggaaacctactagttctcaagataaacagggttctttcaccaagagctgtatgtctatgaaatcagtacctgaagagaaattagccgctgagtctttcatttccaatttccctcatttcgtgcgaatcatgaaaaaattcaacattagtggctcttacaccttgaaagttccatgtcggttctcaatggaacacctcccaaactgcagaacagagattgtgcttcagaacttgaaaggagaatgttggactgtaaattcaattccgactgtaaaggtacaaacgctgcacacattctgtggaggatggtcggcatttgtccgggagaatgacatccagatgggagatatctgcatatttgagctcattgggaaatatgaaatgcgtgtacatgtatgtgcaattgggaagaaggggttagattaccaaaatgggacagctcctaaagagtcggatatccttgcttccttgacaagctagagacctttggtgtgaaacactgtaggaaagattacttcttgcgtaataaaaggcttggcgtttcactggaagataacgaaacttgaatacatgggatcagaaaaggtacacatatcaatgttatggagaagcacttgagtagattatcaaatatttgactaggttggccatatgccttcagtagcttagatgttttgttgttggcattgtctgagcactcttttcagactgtgttgtataagtactgccagaaaagcttctcattttcttgatgtaaataagtgtgtttttagttcaattgtcctgaaacaatctgctgtttggtctgtatatgtataaacagtaatcagacagaacatcttctagaatgagaaattaaagtttcactctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-LbwO1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="96835" stop="102451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97135" g_stop="97273" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97274" i_stop="97731" i_length="458">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97732" g_stop="97865" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="273" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97866" i_stop="98889" i_length="1024">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98890" g_stop="99355" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="739" r_length="466" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99356" i_stop="99446" i_length="91">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99447" g_stop="99616" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="909" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99617" i_stop="101100" i_length="1484">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101101" g_stop="101467" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="910" r_stop="1276" r_length="367" r_score="0.997"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101468" i_stop="101810" i_length="343">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.846" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101811" g_stop="102160" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1277" r_stop="1624" r_length="348" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-U321805" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1626</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97135" e_stop="97273"/>
          <exon e_start="97732" e_stop="97865"/>
          <exon e_start="98890" e_stop="99355"/>
          <exon e_start="99447" e_stop="99616"/>
          <exon e_start="101101" e_stop="101467"/>
          <exon e_start="101811" e_stop="102160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGCAGTTTGCTCATATGCAGGAAGAAATTATGCTGCTAGTTTTCTGGATGAAATGGAGAATGCTGGAGATGCATTAAACAGTAAAGTTACCATTGCTGTGCCAGCTCAAGCAAAGATAATCTTTAGCAATCCAGGTAAATGGTTGTATTGTTTATGTTTATTGTTTTCAGTTCAATTTTTCTAGTTTGAGTAGTGTTCTTTGAATTGTCTATAAGTTTAATCAAGCCAATTTGATGTTACAGTTCATTTAATCATGCACGGACATTTAATAAACACCAATTTTTCTCGTTGAATTGTGCAACTGCCTCGGCGAAAATCTACGTGTTTAGAGAGCCGACACTTTCATTTGTATATTTAAGTTCAGAACATACTCTTCTCATGTGTTGCCTGATTCTTTACAACTATGTAATATTTATTACTGTGCGAAGTGTTTGTATACATTTTTGCCCTGCAATTCTCCTAACCAAGTTTTTTGTTGTTTTCGTAATAGCAATGAAATTTCAGCTGGTAGAAATAACTATATAACAAATCTTTTAGTAATGATTTGGAATAGTATCTGGTATTTTGAATCTAAAGCAAAGATGAAAAACAGGCAATGCTTCCTCCGAGAAAGATATGTGGTTGCCTGCACAGGAAGCAGAAAAGGTTGCTGGTTTGTTTACCTCAAGTTTGCCCAGCTTTACTAAAGTTATGAAGAGGTTCAACATCAGTGGCTCATACACCCTGGTGAGTAGGTCTTCTGTTTTCTTTAAACTATCATTTCCTGAAATGTCTTGCTGAACTACAAAATCTTATAGTAGTCTTAGCTACTGTAATGCATTGCTTCAACATATCTTACTATCAATAAGTGCATCAAATGAGCTTTTACGGAGGAAGACAACTTATATTTATTTACAGGATAATCAACATTCGGTTCCTTTATCCCCTTTTACCTTTCATGATGAATTGGCTAAACTCATAAAAAAATGGCACTGAAATCGATTTTTATTGACCAATCAGAATTGTTCATAAATCTTTTAAACATGAATGTTGTTGTTGAGGATTATGTGCAACGTGGTAAAGTTGTTTTGGTTGTAATAGTTTTGTTGCCAACATCTGAGCTGCTTAATGATGTTTCTGTTTGTTTTACTGACTGCATATTTGTTCTTAACCTGCTTGTTTTATAGTGACAGCAAGCCTATTTTGTTGATATGGCTGATGTTGTTATCTATTCCCTATGTTCCAATTTGTTTGTCTGGTTCTTGGCCCCAATTTAATAAGTAAAGGAAACGTTAGAATCTTGTGGTTTTAAAACAAAGACACTTAGAATGTACCAAAATGCGCTTTAATCTTGTGGTCTTAAACATGCTGGAAAGTTAGACTTAAAGAATTGTCAAAAAGGGAAAGGGCGTTCTTTTTGAAACGGACTATAAAGTGAAGTAAGACAAACATTTCATTTTACCTTTTATCAAACAAAAAAAGTAAGAGAAACAAATTGAAATGGAGGGAGTATATATTAATCTAATCCCCCAAGGAGTTGTGGCATTCAGTTGACTTTGTAGTCATTAGTGATTGATTTATGGTATGCCTGAGCTTTTGCGTGTGGGTTTGCTTGCTTCATCGTAGGAGATGAATCACTCTGGTGACATTGCCTTTATTTGATGTTTAGTTTGGAGTAATGTTGCAACAATTAGACAAGGTTATTCTTCTTTCACAACTCCTGCATGTGCATCACTTGGTTTGTTGATCTCCTTCATATTTTCTTTGGCAGCATATCCCTTACCAATTTGCCACGGAACACCTTCCCAACTGCAAGGTGAAGATTTTACTTCATAATTTAGAAGGGAAAACTTGGACTGTGAATTCAATTCCGACTACAAGAGTACAAACATCACATACCTTTTGCGGAGGGTGGTTATCTTTTGTTCGCGACAATAACATTGATTTGGGAGATACCTGCATTTTTGAGCTTGTCCGCAAGTGTGAATTGCGTGTGCGTGTTCTTAAGGCGGAAAAGGAAGGAAGTGATTACAGTAGTAAGGTAGTTGATGAAGGACTAGTTATTGATTATGCAAAAAATTCTGGATGTAAGTCCAGGAAAGTGGGATCGAGTTCTGATCAAGCGAAGGTTATGACATATGATAAAAAAGGATCTACTCCTGAAAAAGAGAAACATGGCGATATGTTGAAGAATCATCAGCTCCATTCTCAGTCAAAGATTAGCAGTGGAGATTCAGGTAATTTGAAGGACAATTAACTAACTTATTTTAGGTGTCCGTCCTCACACTGAATTTGTATTGAATCCTTTCAACTATCGTGCTCGAACAGCTATCAGGAAACCTACTAGTTCTCAAGATAAACAGGGTTCTTTCACCAAGAGCTGTATGTCTATGAAATCAGTACCTGAAGAGAAATTAGCCGCTGAGTCTTTCATTTCCAATTTCCCTCATTTCGTGCGAATCATGAAAAAATTCAACATTAGTGGCTCTTACACCTTGGTGAGTTCTTCTGCATGTTTTTCCTTTTTATTTATTCTTACTGTCCCAACCTTTTCCATCCCATCAAGTTGCATAATATGGATTCCAAACATTCATGATCATCTTCGAAGAATTTTTCCTTTTCAATATTTTTCTATTGGAGCTTGTTAATTCTTTCTCAAATGTTTAATATATGTCAAAATCATTGTTTCCCAACATAAACAATTATTTTCTACTAGAAACTAAATGCCCACTGGACTTGACGCCTAGTTTTGTCTCTCTATAAAGTTGATGTGTTTGGTATTTGACCCCTCTTTGGCTTCTAGTAGATAACTCTTGTTTGATAAGGGCCTTCTAACTTGGCATAAAATCAACAGTCAAAACAAAGTTGTTGCCCGAGTGAACTTCTTTTTTCTTTTTGATGAAGTAATATGTTTTTTTAAAAAAACATTAAGGAGATGTATATATACAAGAGGCATAGTTAAGTAACAGATTGACAAAAGAGAGTATTTCTGTCAGCCCCCTATACAAAGTTTTGATCGAAGACTTTGCATATAACCAAGTTAAGACAATTGTAGGAGCTCCAGTCATCCGTGTAAATGATGTGAATCTTGTTAGCGATGCCTTTTGTTTTTACATCACTGACTTATAAAGTTAATCATAAATTTTGTGGTGTCAATTCTATTGGACTTACATCAAAGTAAATAGATCGTGACCCCCCTAACTTGTCGAGTCTTATTCGGTGCACACCTAAACTTGGCATTGGCCTAATTACTCCCATCAACTTGGTAATTTGACTGTCACAACCCCCTTGAACGCTGACATAGGCGCTGCTACATGGAATTCTTTTCTTAATTCATGTAACTTTCTTTAGATAAAATATATTTTTTTCCTTTTTAAGTTTACTAATTATATAAATCATCTTTTCAGAGCCAGTTCTGTAACAAATAAGAAATAACATAAAATGGAACAACAATATTTTGGCTATAAGTTTTTTATTTGGCTAAAGATATTATATTCTAAATAAGGCCAAGACAAGAAGAAATACACCTTTACGAATAATCATTGCATCCAAAAAAGAGAGGAATTAAATTTGATCTAAATATTTTACGTATTTGACCCGAAAATAGAACAATGCACCATTGAAATAAATAGTCTTGGCATGAAACTGAGTTGAGATTGCTAAAGAAGGAAATTAAAACTGGTTTAACTGGTTATTTGTAACGATTAAATGTGAGTCTAGCCGTTGTATGGATCAGCATGCATACTTTTGATACTATCTCAATGTGCTGTAAGTAGAGCTGCTTCATTTATTAAAGAAAACGTAATATTAAGTAAAAGCATCACGACTATTTTGGTCTTGAATAGATTACACCAATGGCATTCTCTTCATTTCTGCTGATACTTGTTCCTTAGGCCAGTTTAAGGTGTTGGATGTTATGGCGTTTCTCATGCTATTCTTTGCTTTAAATTCATGTTCTTTGAGCCTTCTACGTCTTTTACAGAAAGTTCCATGTCGGTTCTCAATGGAACACCTCCCAAACTGCAGAACAGAGATTGTGCTTCAGAACTTGAAAGGAGAATGTTGGACTGTAAATTCAATTCCGACTGTAAAGGTACAAACGCTGCACACATTCTGTGGAGGATGGTCGGCATTTGTCCGGGAGAATGACATCCAGATGGGAGATATCTGCATATTTGAGCTCATTGGGAAATATGAAATGCGTGTACATGTATGTGCAATTGGGAAGAAGGGGTTAGATTACCAAAATGGGACAGCTCCTAAAGAGTCGGATATCCTTGCTTCCTTGACAAGCTAGAGACCTTTGGTGTGAAACACTGTAGGAAAGATTACTTCTTGCGTAATACAAGGTGAGGGATAAATTCTCTTTTTTATTCTAATAATTATGGTTCAAATTGCATTTGATAGAGTGTCGCGTACCTTTTTACAGTTTGCTTGCATAGTGCTATTACAAAGCGCCACAAAATTTTGAAATATGAAGGGGGGTTATGGTGCTGTCCTAAAAAGGATAGTTGCAATTTTCTGCTATTTGTATGACGAAATGATGATTTCCCTTCTCTTAACTGTTTCAGTTTCTTTCTTTTCTTTTTCCCAAAGGCGTTTACTATTTCAGTATCTGTACTTTCTTTACATCAACATAAGAACATTGCTGTCCAATTCCATCATCTGGTGGTTAACGACTCTTCCTTTCAGGCTTGGTGTTTCACTGGAAGATAACGAAACTTGAATACATGGGATCAGAAAAGGTACACATATCAATGTTATGGAGAAGCACTTGAGTAGATTATCAAACATTTGACTAGGTTGGCCATATGCCTTCAGTAGCTTAGATGTTTTGTTGTTGGCATTGTCTGAGCACTCTTTTCAGACTCTGTGTTGTATAAGTACTGCCAGAAAAGCTTCTCATTTTCTTGATGTAAATAAGTGTGTTTTTAGTTCAATTGTCCTGAAACAATCTGCTGTTTGGTCTGTATATGTATAAACAGTAATCAGACAGAACATCTTCTAGAATGAGAAATTAAAGTTTCACTCTACTGGATCAC</genome_strand>
        <mrna_strand>GAAGATGCAGTTTGCTCATATGCAGGAAGAAATTATGCTGCTAGTTTTCTGGATGAAATGGAGAATGCTGGAGATGCATTAAACAGTAAAGTTACCATTGCTGTGCCAGCTCAAGCAAAGATAATCTTTAGCAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGCTTCCTCCGAGAAAGATATGTGGTTGCCTGCACAGGAAGCAGAAAAGGTTGCTGGTTTGTTTACCTCAAGTTTGCCCAGCTTTACTAAAGTTATGAAGAGGTTCAACATCAGTGGCTCATACACCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATCCCTTACCAATTTGCCACGGAACACCTTCCCAACTGCAAGGTGAAGATTTTACTTCATAATTTAGAAGGGAAAACTTGGACTGTGAATTCAATTCCGACTACAAGAGTACAAACATCACATACCTTTTGCGGAGGGTGGTTATCTTTTGTTCGCGACAATAACATTGATTTGGGAGATACCTGCATTTTTGAGCTTGTCCGCAAGTGTGAATTGCGTGTGCGTGTTCTTAAGGCGGAAAAGGAAGGAAGTGATTACAGTAGTAAGGTAGTTGATGAAGGACTAGTTATTGATTATGCAAAAAATTCTGGATGTAAGTCCAGGAAAGTGGGATCGAGTTCTGATCAAGCGAAGGTTATGACATATGATAAAAAAGGATCTACTCCTGAAAAAGAGAAACATGGCGATATGTTGAAGAATCATCAGCTCCATTCTCAGTCAAAGATTAGCAGTGGAGATTCAG...........................................................................................CTATCAGGAAACCTACTAGTTCTCAAGATAAACAGGGTTCTTTCACCAAGAGCTGTATGTCTATGAAATCAGTACCTGAAGAGAAATTAGCCGCTGAGTCTTTCATTTCCAATTTCCCTCATTTCGTGCGAATCATGAAAAAATTCAACATTAGTGGCTCTTACACCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTCCATGTCGGTTCTCAATGGAACACCTCCCAAACTGCAGAACAGAGATTGTGCTTCAGAACTTGAAAGGAGAATGTTGGACTGTAAATTCAATTCCGACTGTAAAGGTACAAACGCTGCACACATTCTGTGGAGGATGGTCGGCATTTGTCCGGGAGAATGACATCCAGATGGGAGATATCTGCATATTTGAGCTCATTGGGAAATATGAAATGCGTGTACATGTATGTGCAATTGGGAAGAAGGGGTTAGATTACCAAAATGGGACAGCTCCTAAAGAGTCGGATATCCTTGCTTCCTTGACAAGCTAGAGACCTTTGGTGTGAAACACTGTAGGAAAGATTACTTCTTGCGTAATAAAAG.......................................................................................................................................................................................................................................................................................................................................................GCTTGGCGTTTCACTGGAAGATAACGAAACTTGAATACATGGGATCAGAAAAGGTACACATATCAATGTTATGGAGAAGCACTTGAGTAGATTATCAAATATTTGACTAGGTTGGCCATATGCCTTCAGTAGCTTAGATGTTTTGTTGTTGGCATTGTCTGAGCACTCTTTTCAGA--CTGTGTTGTATAAGTACTGCCAGAAAAGCTTCTCATTTTCTTGATGTAAATAAGTGTGTTTTTAGTTCAATTGTCCTGAAACAATCTGCTGTTTGGTCTGTATATGTATAAACAGTAATCAGACAGAACATCTTCTAGAATGAGAAATTAAAGTTTCACTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3402" PGL_stop="2064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3402" e_stop="3287"/>
            <exon e_start="3061" e_stop="2840"/>
            <exon e_start="2712" e_stop="2615"/>
            <exon e_start="2448" e_stop="2064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.983" e_score="0.986"/>
          <exon-intron don_prob="1.000" acc_prob="0.767" e_score="0.969"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="3402" e_stop="3287" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="3286" i_stop="3062" i_length="225"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="3061" e_stop="2840" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="2839" i_stop="2713" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="2712" e_stop="2615" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.767">
            <gDNA_intron_boundary i_start="2614" i_stop="2449" i_length="166"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="2448" e_stop="2064" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3402" stop="3287"/>
              <exon start="3061" stop="2840"/>
              <exon start="2712" stop="2615"/>
              <exon start="2448" stop="2064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324453" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTTTTGCGCAAAGATGCCAATCCAGAGCTTGCCTTAGCTGTTGATATATGGAGCCTGGGCTGTACTGTTATTGAGATGTTTACTGGACAGCCCCCTTGGGGCGAACTTAGTTGG : GTGCAAGCAATGTTCGGTGTCTTGAACAAATCACCACCTATACCAGAAAAATTATCATCAGAAGGAAAGGATTTCCTTCAGTGCTGCTTTCGGAGGAAACCTGCAGATAGGCCATCAGCTATGACGCTACTTGAACATGCTTTTTTACGTAGTACTAGTTCCCTTGAGCATAGTATCAATGTTGCTGGTTGCTCAGAGGATTCTCCGGGGAAGAAATTCCAT : GATACCCTGAGTCCTAAGAACCCAATCAACCCCAAAAAGGAACAAAAACCACTGTTACCAGGAACATCTGGCAGGCAAGCAAAATCACCATGTAGCAG : TGAAACTTGCCGGCAAACTCAACCTGAAACCTGTGAATATGGAGCAACTTCTCACCATTCTCCACGTTCTGCACTTGAAGTCTTTCCCTGTATTACTTCAATGGAGCTGAACTCGAGTTCACGTGCAGCCAGCCCCTCAAGCGTTCCTAGTAGCTTTCGCCTGGGACCTGAAAACAGAAGTCCTTATAGAATCATAGGGAAGGAAATTCCAAACCTCTGTATAAGATCATAAATGAATGGAGAGGAGGGAAATTCATGTACAGATCAGGAGAATTAGATACAGAAAACTTCAGTTGGATGATTAGTCAAAATGTTGCCATATGTAATATTCATGTTGTATTTGAAGGCATACATATCTTTATAACATATTCATGAAGAATTGAAG</gDNA_template>
            <first_frame> L  F  C  A  K  M  P  I  Q  S  L  P  *  L  L  I  Y  G  A  W  A  V  L  L  L  R  C  L  L  D  S  P  L  G  A  N  L  V  G :   C  K  Q  C  S  V  S  *  T  N  H  H  L  Y  Q  K  N  Y  H  Q  K  E  R  I  S  F  S  A  A  F  G  G  N  L  Q  I  G  H  Q  L  *  R  Y  L  N  M  L  F  Y  V  V  L  V  P  L  S  I  V  S  M  L  L  V  A  Q  R  I  L  R  G  R  N  S  M :   I  P  *  V  L  R  T  Q  S  T  P  K  R  N  K  N  H  C  Y  Q  E  H  L  A  G  K  Q  N  H  H  V  A   : V  K  L  A  G  K  L  N  L  K  P  V  N  M  E  Q  L  L  T  I  L  H  V  L  H  L  K  S  F  P  V  L  L  Q  W  S  *  T  R  V  H  V  Q  P  A  P  Q  A  F  L  V  A  F  A  W  D  L  K  T  E  V  L  I  E  S  *  G  R  K  F  Q  T  S  V  *  D  H  K  *  M  E  R  R  E  I  H  V  Q  I  R  R  I  R  Y  R  K  L  Q  L  D  D  *  S  K  C  C  H  M  *  Y  S  C  C  I  *  R  H  T  Y  L  Y  N  I  F  M  K  N  *   </first_frame>
            <second_frame>  C  F  A  Q  R  C  Q  S  R  A  C  L  S  C  *  Y  M  E  P  G  L  Y  C  Y  *  D  V  Y  W  T  A  P  L  G  R  T  *  L   : G  A  S  N  V  R  C  L  E  Q  I  T  T  Y  T  R  K  I  I  I  R  R  K  G  F  P  S  V  L  L  S  E  E  T  C  R  *  A  I  S  Y  D  A  T  *  T  C  F  F  T  *  Y  *  F  P  *  A  *  Y  Q  C  C  W  L  L  R  G  F  S  G  E  E  I  P   : *  Y  P  E  S  *  E  P  N  Q  P  Q  K  G  T  K  T  T  V  T  R  N  I  W  Q  A  S  K  I  T  M  *  Q  :  *  N  L  P  A  N  S  T  *  N  L  *  I  W  S  N  F  S  P  F  S  T  F  C  T  *  S  L  S  L  Y  Y  F  N  G  A  E  L  E  F  T  C  S  Q  P  L  K  R  S  *  *  L  S  P  G  T  *  K  Q  K  S  L  *  N  H  R  E  G  N  S  K  P  L  Y  K  I  I  N  E  W  R  G  G  K  F  M  Y  R  S  G  E  L  D  T  E  N  F  S  W  M  I  S  Q  N  V  A  I  C  N  I  H  V  V  F  E  G  I  H  I  F  I  T  Y  S  *  R  I  E  </second_frame>
            <third_frame>   V  L  R  K  D  A  N  P  E  L  A  L  A  V  D  I  W  S  L  G  C  T  V  I  E  M  F  T  G  Q  P  P  W  G  E  L  S  W  :  V  Q  A  M  F  G  V  L  N  K  S  P  P  I  P  E  K  L  S  S  E  G  K  D  F  L  Q  C  C  F  R  R  K  P  A  D  R  P  S  A  M  T  L  L  E  H  A  F  L  R  S  T  S  S  L  E  H  S  I  N  V  A  G  C  S  E  D  S  P  G  K  K  F  H  :  D  T  L  S  P  K  N  P  I  N  P  K  K  E  Q  K  P  L  L  P  G  T  S  G  R  Q  A  K  S  P  C  S  S :   E  T  C  R  Q  T  Q  P  E  T  C  E  Y  G  A  T  S  H  H  S  P  R  S  A  L  E  V  F  P  C  I  T  S  M  E  L  N  S  S  S  R  A  A  S  P  S  S  V  P  S  S  F  R  L  G  P  E  N  R  S  P  Y  R  I  I  G  K  E  I  P  N  L  C  I  R  S  *  M  N  G  E  E  G  N  S  C  T  D  Q  E  N  *  I  Q  K  T  S  V  G  *  L  V  K  M  L  P  Y  V  I  F  M  L  Y  L  K  A  Y  I  S  L  *  H  I  H  E  E  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3400" stop="3287"/>
                    <exon start="3061" stop="2840"/>
                    <exon start="2712" stop="2615"/>
                    <exon start="2448" stop="2217"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLRKDANPELALAVDIWSLGCTVIEMFTGQPPWGELSWVQAMFGVLNKSPPIPEKLSSEGKDFLQCCFRRKPADRPSAMTLLEHAFLRSTSSLEHSINVAGCSEDSPGKKFHDTLSPKNPINPKKEQKPLLPGTSGRQAKSPCSSETCRQTQPETCEYGATSHHSPRSALEVFPCITSMELNSSSRAASPSSVPSSFRLGPENRSPYRIIGKEIPNLCIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6441" PGL_stop="5063"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6441" e_stop="6320"/>
            <exon e_start="5606" e_stop="5063"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.072" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6441" e_stop="6320" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.072">
            <gDNA_intron_boundary i_start="6319" i_stop="5607" i_length="713"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="5606" e_stop="5063" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6441" stop="6320"/>
              <exon start="5606" stop="5063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTCTGCTGTGCCACTGCCGTTGCCGCTCCCGGAGCTCAATTCTCTGCCTAAACAGAACTCGGTTCACTCTAATTTGCCGGTTAGAGTTGACAGGGAGCTTTTAAGTCCTCCTCTTGCCAG : GGAAACTTTTGATCGAACTCCAGCTGAGGTGAAAAGTTCTCAGCATCCAAGGTCATCTACTCCAACTTATCGGCGTAGGGGTTTCCCTCAGGATCTGAACGCCGAGGGTGTTGAATTCAGGTTGAACGTTCCTGCTAGAAGTGCCCCAAGTAGTGGTTTTACAAGCCCTGTCCGAAGCCCAAAAAGGTTTAGCACGCAGGACCTTTTTCATCATCCATTGCATCAGGCCTCATCATCACCTTCAGAGGCTTACGCTTTCCAACTTTCACCCACAAGGGTTATAAATAGCGCTGATCATTCTCCAGTGAGTAGCCCAATTTTACCAAGTTCAGCTAACAGAATCAGGAACAGCAAAAGTGTTGCTTTGCATTCACATCATAAATCTCTTCCGGAAAGTTCTCTAGGTTGGAATGAAGCTAACAACAACAATGTGCATCCACTACCCCTTCCACCAGGAGTTCCACGACAACCAGAATTATGTACCATGCACAGCAATATGGATAAACCTTGTGTATCACCAACAAAGGGTCAATGGCTAAAGGGG</gDNA_template>
            <first_frame> S  S  A  V  P  L  P  L  P  L  P  E  L  N  S  L  P  K  Q  N  S  V  H  S  N  L  P  V  R  V  D  R  E  L  L  S  P  P  L  A  R :   E  T  F  D  R  T  P  A  E  V  K  S  S  Q  H  P  R  S  S  T  P  T  Y  R  R  R  G  F  P  Q  D  L  N  A  E  G  V  E  F  R  L  N  V  P  A  R  S  A  P  S  S  G  F  T  S  P  V  R  S  P  K  R  F  S  T  Q  D  L  F  H  H  P  L  H  Q  A  S  S  S  P  S  E  A  Y  A  F  Q  L  S  P  T  R  V  I  N  S  A  D  H  S  P  V  S  S  P  I  L  P  S  S  A  N  R  I  R  N  S  K  S  V  A  L  H  S  H  H  K  S  L  P  E  S  S  L  G  W  N  E  A  N  N  N  N  V  H  P  L  P  L  P  P  G  V  P  R  Q  P  E  L  C  T  M  H  S  N  M  D  K  P  C  V  S  P  T  K  G  Q  W  L  K  G </first_frame>
            <second_frame>  P  L  L  C  H  C  R  C  R  S  R  S  S  I  L  C  L  N  R  T  R  F  T  L  I  C  R  L  E  L  T  G  S  F  *  V  L  L  L  P   : G  K  L  L  I  E  L  Q  L  R  *  K  V  L  S  I  Q  G  H  L  L  Q  L  I  G  V  G  V  S  L  R  I  *  T  P  R  V  L  N  S  G  *  T  F  L  L  E  V  P  Q  V  V  V  L  Q  A  L  S  E  A  Q  K  G  L  A  R  R  T  F  F  I  I  H  C  I  R  P  H  H  H  L  Q  R  L  T  L  S  N  F  H  P  Q  G  L  *  I  A  L  I  I  L  Q  *  V  A  Q  F  Y  Q  V  Q  L  T  E  S  G  T  A  K  V  L  L  C  I  H  I  I  N  L  F  R  K  V  L  *  V  G  M  K  L  T  T  T  M  C  I  H  Y  P  F  H  Q  E  F  H  D  N  Q  N  Y  V  P  C  T  A  I  W  I  N  L  V  Y  H  Q  Q  R  V  N  G  *  R   </second_frame>
            <third_frame>   L  C  C  A  T  A  V  A  A  P  G  A  Q  F  S  A  *  T  E  L  G  S  L  *  F  A  G  *  S  *  Q  G  A  F  K  S  S  S  C  Q  :  G  N  F  *  S  N  S  S  *  G  E  K  F  S  A  S  K  V  I  Y  S  N  L  S  A  *  G  F  P  S  G  S  E  R  R  G  C  *  I  Q  V  E  R  S  C  *  K  C  P  K  *  W  F  Y  K  P  C  P  K  P  K  K  V  *  H  A  G  P  F  S  S  S  I  A  S  G  L  I  I  T  F  R  G  L  R  F  P  T  F  T  H  K  G  Y  K  *  R  *  S  F  S  S  E  *  P  N  F  T  K  F  S  *  Q  N  Q  E  Q  Q  K  C  C  F  A  F  T  S  *  I  S  S  G  K  F  S  R  L  E  *  S  *  Q  Q  Q  C  A  S  T  T  P  S  T  R  S  S  T  T  T  R  I  M  Y  H  A  Q  Q  Y  G  *  T  L  C  I  T  N  K  G  S  M  A  K  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6441" stop="6320"/>
                    <exon start="5606" stop="5063"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSAVPLPLPLPELNSLPKQNSVHSNLPVRVDRELLSPPLARETFDRTPAEVKSSQHPRSSTPTYRRRGFPQDLNAEGVEFRLNVPARSAPSSGFTSPVRSPKRFSTQDLFHHPLHQASSSPSEAYAFQLSPTRVINSADHSPVSSPILPSSANRIRNSKSVALHSHHKSLPESSLGWNEANNNNVHPLPLPPGVPRQPELCTMHSNMDKPCVSPTKGQWLKG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="11054" PGL_stop="14064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11054" e_stop="11440"/>
            <exon e_start="11528" e_stop="11666"/>
            <exon e_start="12942" e_stop="13023"/>
            <exon e_start="13840" e_stop="14064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.991" e_score="0.982"/>
          <exon-intron don_prob="0.976" acc_prob="0.982" e_score="0.993"/>
          <exon-intron don_prob="0.994" acc_prob="0.988" e_score="0.988"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="11054" e_stop="11440" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.991">
            <gDNA_intron_boundary i_start="11441" i_stop="11527" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="11528" e_stop="11666" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.982">
            <gDNA_intron_boundary i_start="11667" i_stop="12941" i_length="1275"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="12942" e_stop="13023" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.988">
            <gDNA_intron_boundary i_start="13024" i_stop="13839" i_length="816"/>
          </intron>
          <exon e_serial="4" e_score="0.938">
            <gDNA_exon_boundary e_start="13840" e_stop="14064" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11054" stop="11440"/>
              <exon start="11528" stop="11666"/>
              <exon start="12942" stop="13023"/>
              <exon start="13840" stop="14064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAAAAACACCCGCCGAAAAAAATAAGCTGCCACATTTCCATGGCAGCAGCCGCCTGTTCCTCCGCCGTATTCAAACGGGCAGCTTCAACCGCCGCCCAAATTCTCCGACACCAGCACTTCTCCTCAGCGGCGGCGGCAGCGGAGATTCACCGGCCGGGCGATTTCTACTGTGACGATAGTGAAGGCGAAGAAAGTGCAGTGTATCAGCACACCCTCAAATTTCAACGCCCATCAACGATAAAACAACTTCAGCTTCTCCATAACTCCGTCAGTCTCATAGGAAAAATTGATTACCCATTCAAAAGAGTTAACACTAAAAACGGCTCTTTTGGGGTTCATACTTTACTCAGTGTCTCCGGTTCTTCTCAATCCCGTCCATCTTTTAA : AGTTATGTTGAAGATGTGGGATGAAATGGCGGAAGTGTCAATGGAGCATTTGAAATCAAATGACCTGGTATATGTTTGGGGTCATTTGGGATCATACATCAAGACTGATGAGAATGGTAAACATAAGATGAGATACCAG : GTAGATGTGAAGGAAATAAATTTCGTGACTCCAGATGTTCAAGCCTTAGCGACCCCAGAATTTCAGAAGAAAGAATCAAGAG : GTGAAGATGAATTGGAGAACTACAGGAACCGGATCCAATTGTGGCAAATTTTCTTCGCTAGCCCTTTTGAATGGATGGACTTCAGGAAGAGTAAAGTCAATCCTAAATACCCCGACTTTAAGAACAGAGATACTGGTGAAGTTCTCTGGCTCAGGACAGATGATCCACCATGGATAAAAAGACAGTTGGATATCCTAGATTCAAGATTTTCTTACGAAAGTTTCT</gDNA_template>
            <first_frame> L  K  T  P  A  E  K  N  K  L  P  H  F  H  G  S  S  R  L  F  L  R  R  I  Q  T  G  S  F  N  R  R  P  N  S  P  T  P  A  L  L  L  S  G  G  G  S  G  D  S  P  A  G  R  F  L  L  *  R  *  *  R  R  R  K  C  S  V  S  A  H  P  Q  I  S  T  P  I  N  D  K  T  T  S  A  S  P  *  L  R  Q  S  H  R  K  N  *  L  P  I  Q  K  S  *  H  *  K  R  L  F  W  G  S  Y  F  T  Q  C  L  R  F  F  S  I  P  S  I  F  *  :  S  Y  V  E  D  V  G  *  N  G  G  S  V  N  G  A  F  E  I  K  *  P  G  I  C  L  G  S  F  G  I  I  H  Q  D  *  *  E  W  *  T  *  D  E  I  P   : G  R  C  E  G  N  K  F  R  D  S  R  C  S  S  L  S  D  P  R  I  S  E  E  R  I  K  R :   *  R  *  I  G  E  L  Q  E  P  D  P  I  V  A  N  F  L  R  *  P  F  *  M  D  G  L  Q  E  E  *  S  Q  S  *  I  P  R  L  *  E  Q  R  Y  W  *  S  S  L  A  Q  D  R  *  S  T  M  D  K  K  T  V  G  Y  P  R  F  K  I  F  L  R  K  F   </first_frame>
            <second_frame>  *  K  H  P  P  K  K  I  S  C  H  I  S  M  A  A  A  A  C  S  S  A  V  F  K  R  A  A  S  T  A  A  Q  I  L  R  H  Q  H  F  S  S  A  A  A  A  A  E  I  H  R  P  G  D  F  Y  C  D  D  S  E  G  E  E  S  A  V  Y  Q  H  T  L  K  F  Q  R  P  S  T  I  K  Q  L  Q  L  L  H  N  S  V  S  L  I  G  K  I  D  Y  P  F  K  R  V  N  T  K  N  G  S  F  G  V  H  T  L  L  S  V  S  G  S  S  Q  S  R  P  S  F  K :   V  M  L  K  M  W  D  E  M  A  E  V  S  M  E  H  L  K  S  N  D  L  V  Y  V  W  G  H  L  G  S  Y  I  K  T  D  E  N  G  K  H  K  M  R  Y  Q  :  V  D  V  K  E  I  N  F  V  T  P  D  V  Q  A  L  A  T  P  E  F  Q  K  K  E  S  R   : G  E  D  E  L  E  N  Y  R  N  R  I  Q  L  W  Q  I  F  F  A  S  P  F  E  W  M  D  F  R  K  S  K  V  N  P  K  Y  P  D  F  K  N  R  D  T  G  E  V  L  W  L  R  T  D  D  P  P  W  I  K  R  Q  L  D  I  L  D  S  R  F  S  Y  E  S  F  </second_frame>
            <third_frame>   K  N  T  R  R  K  K  *  A  A  T  F  P  W  Q  Q  P  P  V  P  P  P  Y  S  N  G  Q  L  Q  P  P  P  K  F  S  D  T  S  T  S  P  Q  R  R  R  Q  R  R  F  T  G  R  A  I  S  T  V  T  I  V  K  A  K  K  V  Q  C  I  S  T  P  S  N  F  N  A  H  Q  R  *  N  N  F  S  F  S  I  T  P  S  V  S  *  E  K  L  I  T  H  S  K  E  L  T  L  K  T  A  L  L  G  F  I  L  Y  S  V  S  P  V  L  L  N  P  V  H  L  L   : K  L  C  *  R  C  G  M  K  W  R  K  C  Q  W  S  I  *  N  Q  M  T  W  Y  M  F  G  V  I  W  D  H  T  S  R  L  M  R  M  V  N  I  R  *  D  T  R :   *  M  *  R  K  *  I  S  *  L  Q  M  F  K  P  *  R  P  Q  N  F  R  R  K  N  Q  E  :  V  K  M  N  W  R  T  T  G  T  G  S  N  C  G  K  F  S  S  L  A  L  L  N  G  W  T  S  G  R  V  K  S  I  L  N  T  P  T  L  R  T  E  I  L  V  K  F  S  G  S  G  Q  M  I  H  H  G  *  K  D  S  W  I  S  *  I  Q  D  F  L  T  K  V  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11058" stop="11440"/>
                    <exon start="11528" stop="11666"/>
                    <exon start="12942" stop="13023"/>
                    <exon start="13840" stop="14063"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHPPKKISCHISMAAAACSSAVFKRAASTAAQILRHQHFSSAAAAAEIHRPGDFYCDDSEGEESAVYQHTLKFQRPSTIKQLQLLHNSVSLIGKIDYPFKRVNTKNGSFGVHTLLSVSGSSQSRPSFKVMLKMWDEMAEVSMEHLKSNDLVYVWGHLGSYIKTDENGKHKMRYQVDVKEINFVTPDVQALATPEFQKKESRGEDELENYRNRIQLWQIFFASPFEWMDFRKSKVNPKYPDFKNRDTGEVLWLRTDDPPWIKRQLDILDSRFSYESF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="19808" PGL_stop="21305"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19808" e_stop="20112"/>
            <exon e_start="20226" e_stop="20635"/>
            <exon e_start="21065" e_stop="21305"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.219" acc_prob="1.000" e_score="0.977"/>
          <exon-intron don_prob="0.979" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="19808" e_stop="20112" e_length="305"/>
          </exon>
          <intron i_serial="1" don_prob="0.219" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20113" i_stop="20225" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20226" e_stop="20635" e_length="410"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.968">
            <gDNA_intron_boundary i_start="20636" i_stop="21064" i_length="429"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="21065" e_stop="21305" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19808" stop="20112"/>
              <exon start="20226" stop="20635"/>
              <exon start="21065" stop="21305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGTGGAAAACAGTTTGAAGTCTCCAAACATGGCGGTGACGGACTTTTTCGCCGGCGAGATTACCACCGAACTCATAAAATACCTGCTGTTGATAGTTAAAAAATCCACTTTATGCCGTTCAAGCGCAGAGAATCTCATTGACAATATCAATGGTCTCCTTCCAATCATCCAAGAAATCAAACAAACCGGTGTTGAACTTCCACAGATACGGCAAACTCAGCTCGACGATTTCTCCAAACTTCTCCGAGATGGCTACGAACTCGCCGGAAAAGTTCTCCACTCCGGCCGTTGGAACATGTACAG : GAACCTACAGTTGGCTAGGAAAATGGAGAGGTTAGAGAAAAGAGTAGCGAGGTTCATGCAAGTGACAATGCAAGCTCATGTACTAGCTGATGTTCATCATGTTAGGTTTAATATGGAGCAGAGATTTGATGTGCTTGAGCATAGGCTTAAAGCTATAAAAATCGGAGTTGATGATAGAAGTGGTGGAGGAGGAGGGTGTTTAGGGGAAGCTGTGAAAAGAATGGAAGAAGATGAGAAATGGTTTGAGGATAGTTTTGTAAATTTAGGTGCTGGGATTGAATTGGGGAAGAGGAAGGTGAAGGAGATGCTGATGGGTGAACAAGATAGGGGTGTGTTTGAGATTTGTGGAATTGGGGGTAGTGGCAAAACTACCTTGGCTAAAGAGATTTGTAAAGATGATCAAGTTAAAA : GTTATTTCAAGGACAAGATTTTCTTTTTCACTGTCTCTCAATCTCCAAATGTGGAGCAATTAAGGAAAATGATTTGGGAAAAGATATCAGGGTGTAATCTCCATGGTTATGGATACGGGGAGATGTTTCCCCAGTGGAACCTACAGTACCAATGGAATACGAAATCTGCATCCCCGGTACTCTTGATTCTTGATGATGTGTGGTCTGCATCTGTTCTAGAGCCACTAGTTTTCAAGATCCC</gDNA_template>
            <first_frame> N  V  E  N  S  L  K  S  P  N  M  A  V  T  D  F  F  A  G  E  I  T  T  E  L  I  K  Y  L  L  L  I  V  K  K  S  T  L  C  R  S  S  A  E  N  L  I  D  N  I  N  G  L  L  P  I  I  Q  E  I  K  Q  T  G  V  E  L  P  Q  I  R  Q  T  Q  L  D  D  F  S  K  L  L  R  D  G  Y  E  L  A  G  K  V  L  H  S  G  R  W  N  M  Y  R :   N  L  Q  L  A  R  K  M  E  R  L  E  K  R  V  A  R  F  M  Q  V  T  M  Q  A  H  V  L  A  D  V  H  H  V  R  F  N  M  E  Q  R  F  D  V  L  E  H  R  L  K  A  I  K  I  G  V  D  D  R  S  G  G  G  G  G  C  L  G  E  A  V  K  R  M  E  E  D  E  K  W  F  E  D  S  F  V  N  L  G  A  G  I  E  L  G  K  R  K  V  K  E  M  L  M  G  E  Q  D  R  G  V  F  E  I  C  G  I  G  G  S  G  K  T  T  L  A  K  E  I  C  K  D  D  Q  V  K   : S  Y  F  K  D  K  I  F  F  F  T  V  S  Q  S  P  N  V  E  Q  L  R  K  M  I  W  E  K  I  S  G  C  N  L  H  G  Y  G  Y  G  E  M  F  P  Q  W  N  L  Q  Y  Q  W  N  T  K  S  A  S  P  V  L  L  I  L  D  D  V  W  S  A  S  V  L  E  P  L  V  F  K  I   </first_frame>
            <second_frame>  M  W  K  T  V  *  S  L  Q  T  W  R  *  R  T  F  S  P  A  R  L  P  P  N  S  *  N  T  C  C  *  *  L  K  N  P  L  Y  A  V  Q  A  Q  R  I  S  L  T  I  S  M  V  S  F  Q  S  S  K  K  S  N  K  P  V  L  N  F  H  R  Y  G  K  L  S  S  T  I  S  P  N  F  S  E  M  A  T  N  S  P  E  K  F  S  T  P  A  V  G  T  C  T   : G  T  Y  S  W  L  G  K  W  R  G  *  R  K  E  *  R  G  S  C  K  *  Q  C  K  L  M  Y  *  L  M  F  I  M  L  G  L  I  W  S  R  D  L  M  C  L  S  I  G  L  K  L  *  K  S  E  L  M  I  E  V  V  E  E  E  G  V  *  G  K  L  *  K  E  W  K  K  M  R  N  G  L  R  I  V  L  *  I  *  V  L  G  L  N  W  G  R  G  R  *  R  R  C  *  W  V  N  K  I  G  V  C  L  R  F  V  E  L  G  V  V  A  K  L  P  W  L  K  R  F  V  K  M  I  K  L  K  :  V  I  S  R  T  R  F  S  F  S  L  S  L  N  L  Q  M  W  S  N  *  G  K  *  F  G  K  R  Y  Q  G  V  I  S  M  V  M  D  T  G  R  C  F  P  S  G  T  Y  S  T  N  G  I  R  N  L  H  P  R  Y  S  *  F  L  M  M  C  G  L  H  L  F  *  S  H  *  F  S  R  S  </second_frame>
            <third_frame>   C  G  K  Q  F  E  V  S  K  H  G  G  D  G  L  F  R  R  R  D  Y  H  R  T  H  K  I  P  A  V  D  S  *  K  I  H  F  M  P  F  K  R  R  E  S  H  *  Q  Y  Q  W  S  P  S  N  H  P  R  N  Q  T  N  R  C  *  T  S  T  D  T  A  N  S  A  R  R  F  L  Q  T  S  P  R  W  L  R  T  R  R  K  S  S  P  L  R  P  L  E  H  V  Q  :  E  P  T  V  G  *  E  N  G  E  V  R  E  K  S  S  E  V  H  A  S  D  N  A  S  S  C  T  S  *  C  S  S  C  *  V  *  Y  G  A  E  I  *  C  A  *  A  *  A  *  S  Y  K  N  R  S  *  *  *  K  W  W  R  R  R  V  F  R  G  S  C  E  K  N  G  R  R  *  E  M  V  *  G  *  F  C  K  F  R  C  W  D  *  I  G  E  E  E  G  E  G  D  A  D  G  *  T  R  *  G  C  V  *  D  L  W  N  W  G  *  W  Q  N  Y  L  G  *  R  D  L  *  R  *  S  S  *  K :   L  F  Q  G  Q  D  F  L  F  H  C  L  S  I  S  K  C  G  A  I  K  E  N  D  L  G  K  D  I  R  V  *  S  P  W  L  W  I  R  G  D  V  S  P  V  E  P  T  V  P  M  E  Y  E  I  C  I  P  G  T  L  D  S  *  *  C  V  V  C  I  C  S  R  A  T  S  F  Q  D  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19808" stop="20112"/>
                    <exon start="20226" stop="20635"/>
                    <exon start="21065" stop="21303"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVENSLKSPNMAVTDFFAGEITTELIKYLLLIVKKSTLCRSSAENLIDNINGLLPIIQEIKQTGVELPQIRQTQLDDFSKLLRDGYELAGKVLHSGRWNMYRNLQLARKMERLEKRVARFMQVTMQAHVLADVHHVRFNMEQRFDVLEHRLKAIKIGVDDRSGGGGGCLGEAVKRMEEDEKWFEDSFVNLGAGIELGKRKVKEMLMGEQDRGVFEICGIGGSGKTTLAKEICKDDQVKSYFKDKIFFFTVSQSPNVEQLRKMIWEKISGCNLHGYGYGEMFPQWNLQYQWNTKSASPVLLILDDVWSASVLEPLVFKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="21404" PGL_stop="22851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21404" e_stop="21474"/>
            <exon e_start="21573" e_stop="21928"/>
            <exon e_start="22042" e_stop="22247"/>
            <exon e_start="22333" e_stop="22851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.979" e_score="0.944"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="0.992"/>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="21404" e_stop="21474" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.979">
            <gDNA_intron_boundary i_start="21475" i_stop="21572" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="21573" e_stop="21928" e_length="356"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="21929" i_stop="22041" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22042" e_stop="22247" e_length="206"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="22248" i_stop="22332" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22333" e_stop="22851" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21404" stop="21474"/>
              <exon start="21573" stop="21928"/>
              <exon start="22042" stop="22247"/>
              <exon start="22333" stop="22851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTATTTTGCCATTTTGCTTTTGGACACAATTCCTTTCCGCGTGGTTTCAGCCAAAAGCTTGTCAAAGAG : ATTGTGGATGAATGTGAAGGGCTTCCTTTGGCTCTTAAGGTCATTGGATCTTCATTGAAGGGAAAACCTGAGATGTTATGGACAAGTGCAAAAAATAGATTATCACGATGCCAACCTGTCTGTGAGTCTCATGAACTGCAGTTGCTTGAGCGAATGAAATTGAGTATTGACTGTTTGCCTGAGAAGGTGCGAGAGTGTTTCCTGGACTTGGGTGCTTTCCCAGAAGACAAAAGGATTCCTCTCGATGTTCTAATTAACATGTGGGTGGAGCTACATGATATTGATGAGGAGGAGGCTTTTCACATTCTTGTTGAACTTTCAGACAAAAATCTCCTAAATCTAGTCAAAGATGCACG : AGCTGGAGACATGTATACAAGTTACTATGAGATATCGGTGTTTCAGCATGATGTATTACGAGACCTAGCAATTCATATGAGCAACCGTGATGATATAAATAAGAGAAAGCGATTGGTTATGCCGCGAAGAGACACAAGCTTCCCAAGAGAATGGGAAAGAAATGTGGACGAACCTTTCCATGCACGAGTCATCTCTGTGCATACAG : ATGAAATGAGAGAAATGGACTGGTTCAGAATGGATTGCCCGAAAGTTGAAGTACTGATTCTCAACTTTGCCTCATCTGAATACTTCTTACCTCCTTTTCTGGAGAACATGCCAAAGCTAAGGGCATTGATAATCATAAACTATAGTGCTGGCAATGCCGTTCTTCATAACATGTCTGTATTCAGTCATTTAACCAACTTGAGAAGCCTTTGGTTCGAGAAGATATCCATCACTCACTTATCTGACTCCACAAATCCTCTCAATAACCTGCGAAAGATATCTCTAGTGCTTTGTGACATGAAAAACAGCTTAGATGAGTCAGATGTAGACCTCCCTGGTTTGTTCCCACAGCTCTCGGAGTTCACAATGGATCACTGCATCAACTTCAACAAGCTACCATCAAGCATTTGCCGGTTGCATAAGCTCAACAGCCTTAGCATCACTAATTGTGATAGTCTTTATGAACTTCCATCTGATTTAGGTGAATTACAAACTCTACAAGTTCTAAGGATATATGCCT</gDNA_template>
            <first_frame> P  Y  F  A  I  L  L  L  D  T  I  P  F  R  V  V  S  A  K  S  L  S  K  R :   L  W  M  N  V  K  G  F  L  W  L  L  R  S  L  D  L  H  *  R  E  N  L  R  C  Y  G  Q  V  Q  K  I  D  Y  H  D  A  N  L  S  V  S  L  M  N  C  S  C  L  S  E  *  N  *  V  L  T  V  C  L  R  R  C  E  S  V  S  W  T  W  V  L  S  Q  K  T  K  G  F  L  S  M  F  *  L  T  C  G  W  S  Y  M  I  L  M  R  R  R  L  F  T  F  L  L  N  F  Q  T  K  I  S  *  I  *  S  K  M  H   : E  L  E  T  C  I  Q  V  T  M  R  Y  R  C  F  S  M  M  Y  Y  E  T  *  Q  F  I  *  A  T  V  M  I  *  I  R  E  S  D  W  L  C  R  E  E  T  Q  A  S  Q  E  N  G  K  E  M  W  T  N  L  S  M  H  E  S  S  L  C  I  Q  :  M  K  *  E  K  W  T  G  S  E  W  I  A  R  K  L  K  Y  *  F  S  T  L  P  H  L  N  T  S  Y  L  L  F  W  R  T  C  Q  S  *  G  H  *  *  S  *  T  I  V  L  A  M  P  F  F  I  T  C  L  Y  S  V  I  *  P  T  *  E  A  F  G  S  R  R  Y  P  S  L  T  Y  L  T  P  Q  I  L  S  I  T  C  E  R  Y  L  *  C  F  V  T  *  K  T  A  *  M  S  Q  M  *  T  S  L  V  C  S  H  S  S  R  S  S  Q  W  I  T  A  S  T  S  T  S  Y  H  Q  A  F  A  G  C  I  S  S  T  A  L  A  S  L  I  V  I  V  F  M  N  F  H  L  I  *  V  N  Y  K  L  Y  K  F  *  G  Y  M  P </first_frame>
            <second_frame>  L  I  L  P  F  C  F  W  T  Q  F  L  S  A  W  F  Q  P  K  A  C  Q  R   : D  C  G  *  M  *  R  A  S  F  G  S  *  G  H  W  I  F  I  E  G  K  T  *  D  V  M  D  K  C  K  K  *  I  I  T  M  P  T  C  L  *  V  S  *  T  A  V  A  *  A  N  E  I  E  Y  *  L  F  A  *  E  G  A  R  V  F  P  G  L  G  C  F  P  R  R  Q  K  D  S  S  R  C  S  N  *  H  V  G  G  A  T  *  Y  *  *  G  G  G  F  S  H  S  C  *  T  F  R  Q  K  S  P  K  S  S  Q  R  C  T  :  S  W  R  H  V  Y  K  L  L  *  D  I  G  V  S  A  *  C  I  T  R  P  S  N  S  Y  E  Q  P  *  *  Y  K  *  E  K  A  I  G  Y  A  A  K  R  H  K  L  P  K  R  M  G  K  K  C  G  R  T  F  P  C  T  S  H  L  C  A  Y  R :   *  N  E  R  N  G  L  V  Q  N  G  L  P  E  S  *  S  T  D  S  Q  L  C  L  I  *  I  L  L  T  S  F  S  G  E  H  A  K  A  K  G  I  D  N  H  K  L  *  C  W  Q  C  R  S  S  *  H  V  C  I  Q  S  F  N  Q  L  E  K  P  L  V  R  E  D  I  H  H  S  L  I  *  L  H  K  S  S  Q  *  P  A  K  D  I  S  S  A  L  *  H  E  K  Q  L  R  *  V  R  C  R  P  P  W  F  V  P  T  A  L  G  V  H  N  G  S  L  H  Q  L  Q  Q  A  T  I  K  H  L  P  V  A  *  A  Q  Q  P  *  H  H  *  L  *  *  S  L  *  T  S  I  *  F  R  *  I  T  N  S  T  S  S  K  D  I  C   </second_frame>
            <third_frame>   L  F  C  H  F  A  F  G  H  N  S  F  P  R  G  F  S  Q  K  L  V  K  E  :  I  V  D  E  C  E  G  L  P  L  A  L  K  V  I  G  S  S  L  K  G  K  P  E  M  L  W  T  S  A  K  N  R  L  S  R  C  Q  P  V  C  E  S  H  E  L  Q  L  L  E  R  M  K  L  S  I  D  C  L  P  E  K  V  R  E  C  F  L  D  L  G  A  F  P  E  D  K  R  I  P  L  D  V  L  I  N  M  W  V  E  L  H  D  I  D  E  E  E  A  F  H  I  L  V  E  L  S  D  K  N  L  L  N  L  V  K  D  A  R :   A  G  D  M  Y  T  S  Y  Y  E  I  S  V  F  Q  H  D  V  L  R  D  L  A  I  H  M  S  N  R  D  D  I  N  K  R  K  R  L  V  M  P  R  R  D  T  S  F  P  R  E  W  E  R  N  V  D  E  P  F  H  A  R  V  I  S  V  H  T   : D  E  M  R  E  M  D  W  F  R  M  D  C  P  K  V  E  V  L  I  L  N  F  A  S  S  E  Y  F  L  P  P  F  L  E  N  M  P  K  L  R  A  L  I  I  I  N  Y  S  A  G  N  A  V  L  H  N  M  S  V  F  S  H  L  T  N  L  R  S  L  W  F  E  K  I  S  I  T  H  L  S  D  S  T  N  P  L  N  N  L  R  K  I  S  L  V  L  C  D  M  K  N  S  L  D  E  S  D  V  D  L  P  G  L  F  P  Q  L  S  E  F  T  M  D  H  C  I  N  F  N  K  L  P  S  S  I  C  R  L  H  K  L  N  S  L  S  I  T  N  C  D  S  L  Y  E  L  P  S  D  L  G  E  L  Q  T  L  Q  V  L  R  I  Y  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21406" stop="21474"/>
                    <exon start="21573" stop="21928"/>
                    <exon start="22042" stop="22247"/>
                    <exon start="22333" stop="22850"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1149</number_coding_nucleotides>
                  <number_encoded_amino_acids>383</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFCHFAFGHNSFPRGFSQKLVKEIVDECEGLPLALKVIGSSLKGKPEMLWTSAKNRLSRCQPVCESHELQLLERMKLSIDCLPEKVRECFLDLGAFPEDKRIPLDVLINMWVELHDIDEEEAFHILVELSDKNLLNLVKDARAGDMYTSYYEISVFQHDVLRDLAIHMSNRDDINKRKRLVMPRRDTSFPREWERNVDEPFHARVISVHTDEMREMDWFRMDCPKVEVLILNFASSEYFLPPFLENMPKLRALIIINYSAGNAVLHNMSVFSHLTNLRSLWFEKISITHLSDSTNPLNNLRKISLVLCDMKNSLDESDVDLPGLFPQLSEFTMDHCINFNKLPSSICRLHKLNSLSITNCDSLYELPSDLGELQTLQVLRIYA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="31281" PGL_stop="24195"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31281" e_stop="30870"/>
            <exon e_start="28774" e_stop="28677"/>
            <exon e_start="28590" e_stop="28414"/>
            <exon e_start="26915" e_stop="26815"/>
            <exon e_start="26656" e_stop="26581"/>
            <exon e_start="26488" e_stop="26429"/>
            <exon e_start="26346" e_stop="26162"/>
            <exon e_start="26084" e_stop="25988"/>
            <exon e_start="25687" e_stop="25601"/>
            <exon e_start="25476" e_stop="25418"/>
            <exon e_start="25224" e_stop="25133"/>
            <exon e_start="25022" e_stop="24945"/>
            <exon e_start="24861" e_stop="24701"/>
            <exon e_start="24539" e_stop="24195"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.909" e_score="0.993"/>
          <exon-intron don_prob="0.982" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.104" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.735" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.750" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="31281" e_stop="30870" e_length="412"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.909">
            <gDNA_intron_boundary i_start="30869" i_stop="28775" i_length="2095"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28774" e_stop="28677" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.981">
            <gDNA_intron_boundary i_start="28676" i_stop="28591" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="28590" e_stop="28414" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28413" i_stop="26916" i_length="1498"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26915" e_stop="26815" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26814" i_stop="26657" i_length="158"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26656" e_stop="26581" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.935">
            <gDNA_intron_boundary i_start="26580" i_stop="26489" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26488" e_stop="26429" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.790">
            <gDNA_intron_boundary i_start="26428" i_stop="26347" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26346" e_stop="26162" e_length="185"/>
          </exon>
          <intron i_serial="7" don_prob="0.104" acc_prob="0.978">
            <gDNA_intron_boundary i_start="26161" i_stop="26085" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="26084" e_stop="25988" e_length="97"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="25987" i_stop="25688" i_length="300"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="25687" e_stop="25601" e_length="87"/>
          </exon>
          <intron i_serial="9" don_prob="0.735" acc_prob="0.992">
            <gDNA_intron_boundary i_start="25600" i_stop="25477" i_length="124"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="25476" e_stop="25418" e_length="59"/>
          </exon>
          <intron i_serial="10" don_prob="0.888" acc_prob="0.886">
            <gDNA_intron_boundary i_start="25417" i_stop="25225" i_length="193"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="25224" e_stop="25133" e_length="92"/>
          </exon>
          <intron i_serial="11" don_prob="0.750" acc_prob="0.637">
            <gDNA_intron_boundary i_start="25132" i_stop="25023" i_length="110"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="25022" e_stop="24945" e_length="78"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.833">
            <gDNA_intron_boundary i_start="24944" i_stop="24862" i_length="83"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="24861" e_stop="24701" e_length="161"/>
          </exon>
          <intron i_serial="13" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="24700" i_stop="24540" i_length="161"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="24539" e_stop="24195" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31281" stop="30870"/>
              <exon start="28774" stop="28677"/>
              <exon start="28590" stop="28414"/>
              <exon start="26915" stop="26815"/>
              <exon start="26656" stop="26581"/>
              <exon start="26488" stop="26429"/>
              <exon start="26346" stop="26162"/>
              <exon start="26084" stop="25988"/>
              <exon start="25687" stop="25601"/>
              <exon start="25476" stop="25418"/>
              <exon start="25224" stop="25133"/>
              <exon start="25022" stop="24945"/>
              <exon start="24861" stop="24701"/>
              <exon start="24539" stop="24195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATAAAAAGATAAAAAAATGGGGTGTCTATAATTTGCATGTTTCAGTACTTATTAATCTCAAAATCTGATCTTGAGTATTTAAATTCCATTTACTTACTATTGTAATTAATGCTAGTCATTTCAAGAAAAGGGGAAAAAGACTCAATTTTTAAGCTCAGGTTTCATGTCGGTGCTGATTCTTGAAAACTAAGTTTAAAGATTCAACCTTTAGACCTATTTTGTAGATTTTTTTTTTTTGAGAGAAAATTATGGGGGAGACACATAATCATGAACACAACCACCAGCCACCGCCGCAACAGGCGGCGGCGCCACCAGCAATGCCACTTGGTTCAGCAAGAGGACCTATGTTTCCTCCGGCAGAGCAACTACTTCAGCTTCACTACTGCATACACTCAAATCCTTCTTGGC : CACAAACTGTTTTGTTGGCTTTTCAACACTACATAGTTATGCTTGGAACAACAGTAATGATTGCCACCGTGCTGGTACCTCAGATGGGTGGGGGTCCG : GGTGACAAAGCTCAAGTTATCCAGTCTTTGCTTTTCACTTCAGGAGTGAATACTCTTCTGCAAACGCTTTTTGGCACAAGACTTCCCACTGTGATGGGTCCGTCATTTGCTTACATCATATCAGCTCTGTCAGTCATTAACGATCTCTCGGACAGTAATTTCAGGAGTGAGCATGAG : AGATTCAAGCACACTATGAGAGCTATTCAAGGGTCACTGATAGTGTCTTCCTTTATCAACATAATACTTGGATATGGCCAAGCGTGGGGAAATCTTACAAG : GTTTTTCAGTCCTGTAGTCATTACGCCACTTGTCTGTGTTGTAGGTCTTGGTTTGTTTGGTAGGGGTTTTCCTCAG : GTGGGTGATTGTATAGAGATTGGCCTTCCCATGTTAATTCTACTTGTCATTTCTCAGCAG : TATATGCAACGTGTTCATCCAGTTGCCCAATCCATACTTGAAAGGTTTGCTTTGCTCCTCTGCATTGGGTTTATCTGGGCTTTTGCTGCTATTCTTACTGTTGCCGGTGCTTACAACCATGTGAAGGAGCAAACTAAGATGAACTGCCGAATTGACCATTCGTTCCTCTTGTCATCGGCTCCATG : GATCAAAGTTCCTTACCCTTTCCTGTGGGGGACTCCTATATTCAGAGCTAGCAATGTCTTTGGAATGATGGGTGCTGCACTTGTATCAGCAGCAGAG : TCAACAGCAACTTTTTATGCTGCATCAAGGCTTGCAGGTGCGACCACCCCTCCGGCCCATGTTGTGAGTAGAAGCATTGGCTTACAG : GGTATAGGACAGCTCTTTGACGGGTTCTTTGGTGCTATTGTTGGTACTACTGCATCTGT : TGAAAATGTCGGCCTTCTGGGACTAACTCGTGTTGGGAGTAGAAGAGTTGTTCAGATTTCTACTGCTTTCATGATCTTCTTCTCCATATTTG : GAAAATTCGGAGCATTCTTTGCTCAAATTCCTTTGCCCATATTTGCAGCTATCTACTGCATCTTATACGGTATAGTAG : CTGCTATTGGTATTTCCTTCATCCAATTTGCGAACAAAAACTCCATGCGGAATATATACGTGCTCGGTGTCTCTCTATTCCTCGGTATATCTATACCTCAATACTTTGTGATGAACACAGATATAGCTGGTCATGGACCTGTTAGAACTCCAGCTGGATGG : TTCAATGACATATTGAACACAATATTCTCTTCACCTCCTACTGTTGCAACGATTGTCGGGACAGTAGTAGACAACACACTCGAAGCAAGACACTCATATGACGATAGAGGTATTCCGTGGTTGGTTCCTTTCCAGAGGAGGAAAGGAGATAGCAGAAATGAGGAGTTCTATAGTTACCCTCTTAGAATTAATGAGTACATCCCAAGTAGATTTCTGTGATAACTTATACATCCATGTATATGACTGTATCAAAGCTGTATGACAAAATTTCTTTTTAGCTCTCCACTTTAGTCCATTGTTTGTTTGTTTTTCCATTTCAATTCTTGTCACATGAAATTTTTGAAC</gDNA_template>
            <first_frame> *  N  K  K  I  K  K  W  G  V  Y  N  L  H  V  S  V  L  I  N  L  K  I  *  S  *  V  F  K  F  H  L  L  T  I  V  I  N  A  S  H  F  K  K  R  G  K  R  L  N  F  *  A  Q  V  S  C  R  C  *  F  L  K  T  K  F  K  D  S  T  F  R  P  I  L  *  I  F  F  F  *  E  K  I  M  G  E  T  H  N  H  E  H  N  H  Q  P  P  P  Q  Q  A  A  A  P  P  A  M  P  L  G  S  A  R  G  P  M  F  P  P  A  E  Q  L  L  Q  L  H  Y  C  I  H  S  N  P  S  W   : P  Q  T  V  L  L  A  F  Q  H  Y  I  V  M  L  G  T  T  V  M  I  A  T  V  L  V  P  Q  M  G  G  G  P  :  G  D  K  A  Q  V  I  Q  S  L  L  F  T  S  G  V  N  T  L  L  Q  T  L  F  G  T  R  L  P  T  V  M  G  P  S  F  A  Y  I  I  S  A  L  S  V  I  N  D  L  S  D  S  N  F  R  S  E  H  E  :  R  F  K  H  T  M  R  A  I  Q  G  S  L  I  V  S  S  F  I  N  I  I  L  G  Y  G  Q  A  W  G  N  L  T  R :   F  F  S  P  V  V  I  T  P  L  V  C  V  V  G  L  G  L  F  G  R  G  F  P  Q  :  V  G  D  C  I  E  I  G  L  P  M  L  I  L  L  V  I  S  Q  Q  :  Y  M  Q  R  V  H  P  V  A  Q  S  I  L  E  R  F  A  L  L  L  C  I  G  F  I  W  A  F  A  A  I  L  T  V  A  G  A  Y  N  H  V  K  E  Q  T  K  M  N  C  R  I  D  H  S  F  L  L  S  S  A  P  W :   I  K  V  P  Y  P  F  L  W  G  T  P  I  F  R  A  S  N  V  F  G  M  M  G  A  A  L  V  S  A  A  E  :  S  T  A  T  F  Y  A  A  S  R  L  A  G  A  T  T  P  P  A  H  V  V  S  R  S  I  G  L  Q  :  G  I  G  Q  L  F  D  G  F  F  G  A  I  V  G  T  T  A  S  V :   E  N  V  G  L  L  G  L  T  R  V  G  S  R  R  V  V  Q  I  S  T  A  F  M  I  F  F  S  I  F   : G  K  F  G  A  F  F  A  Q  I  P  L  P  I  F  A  A  I  Y  C  I  L  Y  G  I  V   : A  A  I  G  I  S  F  I  Q  F  A  N  K  N  S  M  R  N  I  Y  V  L  G  V  S  L  F  L  G  I  S  I  P  Q  Y  F  V  M  N  T  D  I  A  G  H  G  P  V  R  T  P  A  G  W  :  F  N  D  I  L  N  T  I  F  S  S  P  P  T  V  A  T  I  V  G  T  V  V  D  N  T  L  E  A  R  H  S  Y  D  D  R  G  I  P  W  L  V  P  F  Q  R  R  K  G  D  S  R  N  E  E  F  Y  S  Y  P  L  R  I  N  E  Y  I  P  S  R  F  L  *  *  L  I  H  P  C  I  *  L  Y  Q  S  C  M  T  K  F  L  F  S  S  P  L  *  S  I  V  C  L  F  F  H  F  N  S  C  H  M  K  F  L  N </first_frame>
            <second_frame>  K  I  K  R  *  K  N  G  V  S  I  I  C  M  F  Q  Y  L  L  I  S  K  S  D  L  E  Y  L  N  S  I  Y  L  L  L  *  L  M  L  V  I  S  R  K  G  E  K  D  S  I  F  K  L  R  F  H  V  G  A  D  S  *  K  L  S  L  K  I  Q  P  L  D  L  F  C  R  F  F  F  F  E  R  K  L  W  G  R  H  I  I  M  N  T  T  T  S  H  R  R  N  R  R  R  R  H  Q  Q  C  H  L  V  Q  Q  E  D  L  C  F  L  R  Q  S  N  Y  F  S  F  T  T  A  Y  T  Q  I  L  L  G  :  H  K  L  F  C  W  L  F  N  T  T  *  L  C  L  E  Q  Q  *  *  L  P  P  C  W  Y  L  R  W  V  G  V  R :   V  T  K  L  K  L  S  S  L  C  F  S  L  Q  E  *  I  L  F  C  K  R  F  L  A  Q  D  F  P  L  *  W  V  R  H  L  L  T  S  Y  Q  L  C  Q  S  L  T  I  S  R  T  V  I  S  G  V  S  M  R :   D  S  S  T  L  *  E  L  F  K  G  H  *  *  C  L  P  L  S  T  *  Y  L  D  M  A  K  R  G  E  I  L  Q   : G  F  S  V  L  *  S  L  R  H  L  S  V  L  *  V  L  V  C  L  V  G  V  F  L  R :   W  V  I  V  *  R  L  A  F  P  C  *  F  Y  L  S  F  L  S  S :   I  C  N  V  F  I  Q  L  P  N  P  Y  L  K  G  L  L  C  S  S  A  L  G  L  S  G  L  L  L  L  F  L  L  L  P  V  L  T  T  M  *  R  S  K  L  R  *  T  A  E  L  T  I  R  S  S  C  H  R  L  H   : G  S  K  F  L  T  L  S  C  G  G  L  L  Y  S  E  L  A  M  S  L  E  *  W  V  L  H  L  Y  Q  Q  Q  S :   Q  Q  Q  L  F  M  L  H  Q  G  L  Q  V  R  P  P  L  R  P  M  L  *  V  E  A  L  A  Y  R :   V  *  D  S  S  L  T  G  S  L  V  L  L  L  V  L  L  H  L   : L  K  M  S  A  F  W  D  *  L  V  L  G  V  E  E  L  F  R  F  L  L  L  S  *  S  S  S  P  Y  L  :  E  N  S  E  H  S  L  L  K  F  L  C  P  Y  L  Q  L  S  T  A  S  Y  T  V  *  *  :  L  L  L  V  F  P  S  S  N  L  R  T  K  T  P  C  G  I  Y  T  C  S  V  S  L  Y  S  S  V  Y  L  Y  L  N  T  L  *  *  T  Q  I  *  L  V  M  D  L  L  E  L  Q  L  D  G :   S  M  T  Y  *  T  Q  Y  S  L  H  L  L  L  L  Q  R  L  S  G  Q  *  *  T  T  H  S  K  Q  D  T  H  M  T  I  E  V  F  R  G  W  F  L  S  R  G  G  K  E  I  A  E  M  R  S  S  I  V  T  L  L  E  L  M  S  T  S  Q  V  D  F  C  D  N  L  Y  I  H  V  Y  D  C  I  K  A  V  *  Q  N  F  F  L  A  L  H  F  S  P  L  F  V  C  F  S  I  S  I  L  V  T  *  N  F  *   </second_frame>
            <third_frame>   K  *  K  D  K  K  M  G  C  L  *  F  A  C  F  S  T  Y  *  S  Q  N  L  I  L  S  I  *  I  P  F  T  Y  Y  C  N  *  C  *  S  F  Q  E  K  G  K  K  T  Q  F  L  S  S  G  F  M  S  V  L  I  L  E  N  *  V  *  R  F  N  L  *  T  Y  F  V  D  F  F  F  L  R  E  N  Y  G  G  D  T  *  S  *  T  Q  P  P  A  T  A  A  T  G  G  G  A  T  S  N  A  T  W  F  S  K  R  T  Y  V  S  S  G  R  A  T  T  S  A  S  L  L  H  T  L  K  S  F  L  A :   T  N  C  F  V  G  F  S  T  L  H  S  Y  A  W  N  N  S  N  D  C  H  R  A  G  T  S  D  G  W  G  S   : G  *  Q  S  S  S  Y  P  V  F  A  F  H  F  R  S  E  Y  S  S  A  N  A  F  W  H  K  T  S  H  C  D  G  S  V  I  C  L  H  H  I  S  S  V  S  H  *  R  S  L  G  Q  *  F  Q  E  *  A  *   : E  I  Q  A  H  Y  E  S  Y  S  R  V  T  D  S  V  F  L  Y  Q  H  N  T  W  I  W  P  S  V  G  K  S  Y  K  :  V  F  Q  S  C  S  H  Y  A  T  C  L  C  C  R  S  W  F  V  W  *  G  F  S  S   : G  G  *  L  Y  R  D  W  P  S  H  V  N  S  T  C  H  F  S  A   : V  Y  A  T  C  S  S  S  C  P  I  H  T  *  K  V  C  F  A  P  L  H  W  V  Y  L  G  F  C  C  Y  S  Y  C  C  R  C  L  Q  P  C  E  G  A  N  *  D  E  L  P  N  *  P  F  V  P  L  V  I  G  S  M  :  D  Q  S  S  L  P  F  P  V  G  D  S  Y  I  Q  S  *  Q  C  L  W  N  D  G  C  C  T  C  I  S  S  R   : V  N  S  N  F  L  C  C  I  K  A  C  R  C  D  H  P  S  G  P  C  C  E  *  K  H  W  L  T   : G  Y  R  T  A  L  *  R  V  L  W  C  Y  C  W  Y  Y  C  I  C  :  *  K  C  R  P  S  G  T  N  S  C  W  E  *  K  S  C  S  D  F  Y  C  F  H  D  L  L  L  H  I  W :   K  I  R  S  I  L  C  S  N  S  F  A  H  I  C  S  Y  L  L  H  L  I  R  Y  S  S :   C  Y  W  Y  F  L  H  P  I  C  E  Q  K  L  H  A  E  Y  I  R  A  R  C  L  S  I  P  R  Y  I  Y  T  S  I  L  C  D  E  H  R  Y  S  W  S  W  T  C  *  N  S  S  W  M   : V  Q  *  H  I  E  H  N  I  L  F  T  S  Y  C  C  N  D  C  R  D  S  S  R  Q  H  T  R  S  K  T  L  I  *  R  *  R  Y  S  V  V  G  S  F  P  E  E  E  R  R  *  Q  K  *  G  V  L  *  L  P  S  *  N  *  *  V  H  P  K  *  I  S  V  I  T  Y  T  S  M  Y  M  T  V  S  K  L  Y  D  K  I  S  F  *  L  S  T  L  V  H  C  L  F  V  F  P  F  Q  F  L  S  H  E  I  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31038" stop="30870"/>
                    <exon start="28774" stop="28677"/>
                    <exon start="28590" stop="28414"/>
                    <exon start="26915" stop="26815"/>
                    <exon start="26656" stop="26581"/>
                    <exon start="26488" stop="26429"/>
                    <exon start="26346" stop="26162"/>
                    <exon start="26084" stop="25988"/>
                    <exon start="25687" stop="25601"/>
                    <exon start="25476" stop="25418"/>
                    <exon start="25224" stop="25133"/>
                    <exon start="25022" stop="24945"/>
                    <exon start="24861" stop="24701"/>
                    <exon start="24539" stop="24321"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1656</number_coding_nucleotides>
                  <number_encoded_amino_acids>552</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKIMGETHNHEHNHQPPPQQAAAPPAMPLGSARGPMFPPAEQLLQLHYCIHSNPSWPQTVLLAFQHYIVMLGTTVMIATVLVPQMGGGPGDKAQVIQSLLFTSGVNTLLQTLFGTRLPTVMGPSFAYIISALSVINDLSDSNFRSEHERFKHTMRAIQGSLIVSSFINIILGYGQAWGNLTRFFSPVVITPLVCVVGLGLFGRGFPQVGDCIEIGLPMLILLVISQQYMQRVHPVAQSILERFALLLCIGFIWAFAAILTVAGAYNHVKEQTKMNCRIDHSFLLSSAPWIKVPYPFLWGTPIFRASNVFGMMGAALVSAAESTATFYAASRLAGATTPPAHVVSRSIGLQGIGQLFDGFFGAIVGTTASVENVGLLGLTRVGSRRVVQISTAFMIFFSIFGKFGAFFAQIPLPIFAAIYCILYGIVAAIGISFIQFANKNSMRNIYVLGVSLFLGISIPQYFVMNTDIAGHGPVRTPAGWFNDILNTIFSSPPTVATIVGTVVDNTLEARHSYDDRGIPWLVPFQRRKGDSRNEEFYSYPLRINEYIPSRFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30653" e_stop="30192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30653" e_stop="30192" e_length="462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30653" stop="30192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341154" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAATTTTAAAATCAGAAGTATTGCTTGTAATATTAATGTGTTTTTTTGTGCTGAAGAAGAATCTACTTGTAAAGTTAAAGATGAAAAAATTGACACCCGCCTTTTTGTGAAGTTTGTGTTTTCATTTTCATGGTTTGAGTGAATTTTAAAATCTAAAAGTATTCCTACTGAATAACCTTTTTGCTGAACAAGAATCAACTTGTAAAAGGTTCAACCTTTTTATGTTTTTTAAAATATGTTTCAGTTTTCTGATTGTTTTGTGTGATAGTGTCATCTTTGAGAATGTAAAGCTTCCTTCCAGCAGTCCTTCTTGTGTTCCTGTTCTTTGGTATAAATTGATGCCAATTTTCCACATGGTCTAGCTTTGTTCGCTCTTATTGCGAGACAATCACAAAAACAGAAGAGGTTAAATTGTTCCGGTTATAGTAAGATTAACTGTCAGAATGATGAATTGCTGAAG</gDNA_template>
            <first_frame> V  N  F  K  I  R  S  I  A  C  N  I  N  V  F  F  C  A  E  E  E  S  T  C  K  V  K  D  E  K  I  D  T  R  L  F  V  K  F  V  F  S  F  S  W  F  E  *  I  L  K  S  K  S  I  P  T  E  *  P  F  C  *  T  R  I  N  L  *  K  V  Q  P  F  Y  V  F  *  N  M  F  Q  F  S  D  C  F  V  *  *  C  H  L  *  E  C  K  A  S  F  Q  Q  S  F  L  C  S  C  S  L  V  *  I  D  A  N  F  P  H  G  L  A  L  F  A  L  I  A  R  Q  S  Q  K  Q  K  R  L  N  C  S  G  Y  S  K  I  N  C  Q  N  D  E  L  L  K </first_frame>
            <second_frame>  *  I  L  K  S  E  V  L  L  V  I  L  M  C  F  F  V  L  K  K  N  L  L  V  K  L  K  M  K  K  L  T  P  A  F  L  *  S  L  C  F  H  F  H  G  L  S  E  F  *  N  L  K  V  F  L  L  N  N  L  F  A  E  Q  E  S  T  C  K  R  F  N  L  F  M  F  F  K  I  C  F  S  F  L  I  V  L  C  D  S  V  I  F  E  N  V  K  L  P  S  S  S  P  S  C  V  P  V  L  W  Y  K  L  M  P  I  F  H  M  V  *  L  C  S  L  L  L  R  D  N  H  K  N  R  R  G  *  I  V  P  V  I  V  R  L  T  V  R  M  M  N  C  *   </second_frame>
            <third_frame>   E  F  *  N  Q  K  Y  C  L  *  Y  *  C  V  F  L  C  *  R  R  I  Y  L  *  S  *  R  *  K  N  *  H  P  P  F  C  E  V  C  V  F  I  F  M  V  *  V  N  F  K  I  *  K  Y  S  Y  *  I  T  F  L  L  N  K  N  Q  L  V  K  G  S  T  F  L  C  F  L  K  Y  V  S  V  F  *  L  F  C  V  I  V  S  S  L  R  M  *  S  F  L  P  A  V  L  L  V  F  L  F  F  G  I  N  *  C  Q  F  S  T  W  S  S  F  V  R  S  Y  C  E  T  I  T  K  T  E  E  V  K  L  F  R  L  *  *  D  *  L  S  E  *  *  I  A  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30502" stop="30290"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLKVFLLNNLFAEQESTCKRFNLFMFFKICFSFLIVLCDSVIFENVKLPSSSPSCVPVLWYKLMPIFHMV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="29064" PGL_stop="29687"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29064" e_stop="29687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="29064" e_stop="29687" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29064" stop="29687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330610" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTATTGCTCAATAGGGAAACCTTTGTTCTATCAAAGTATATTCCTCGGATGGTAAAATACAAGAATTATCCTTTAGCTAAATAACAGTTTATGTTGAGGCAATCTACCAATGGTTAAGAGGATCTTTTGTCGTTATCAGAATTCAGTCATTCCATGGAGAGACTGAAACTCCTTTTGGTTGGAAAATTATATATTGTATGAATGCAAATTTCACATTTATGGAAAGCCTTCCATGATACATTCTGCATCTTAAGAAAGAAGCTTGACACCACTCAACTCCCCATAAACAGTTTGATTTAAGTCTTCTCATGATAGACAGCTCCCTCAAGAGAAAAAGAGAACATGTTACAACTCGATACTAGAAACAAAAGCATTTAACTCGGCAGTCAGAGCAATCTCAACTCCAAACATTGGAGGAGCGGGGAGCTTTCTAAATCACCATGCTTACTATGATTCCAATTTCTTCACCTGACGATAGTCAAAAAGCATAAGCACCAATTGACTCACATGAAAAAGTGACCATTACATGTCTTGGACGATTTAGAAGCTATAATGAATTTTAAGTCGATAATATCTGCAGAGACTCTTCCTTTTCCTCATCATCATTGAATCCCAATACCCT</gDNA_template>
            <first_frame> S  Y  C  S  I  G  K  P  L  F  Y  Q  S  I  F  L  G  W  *  N  T  R  I  I  L  *  L  N  N  S  L  C  *  G  N  L  P  M  V  K  R  I  F  C  R  Y  Q  N  S  V  I  P  W  R  D  *  N  S  F  W  L  E  N  Y  I  L  Y  E  C  K  F  H  I  Y  G  K  P  S  M  I  H  S  A  S  *  E  R  S  L  T  P  L  N  S  P  *  T  V  *  F  K  S  S  H  D  R  Q  L  P  Q  E  K  K  R  T  C  Y  N  S  I  L  E  T  K  A  F  N  S  A  V  R  A  I  S  T  P  N  I  G  G  A  G  S  F  L  N  H  H  A  Y  Y  D  S  N  F  F  T  *  R  *  S  K  S  I  S  T  N  *  L  T  *  K  S  D  H  Y  M  S  W  T  I  *  K  L  *  *  I  L  S  R  *  Y  L  Q  R  L  F  L  F  L  I  I  I  E  S  Q  Y  P </first_frame>
            <second_frame>  L  I  A  Q  *  G  N  L  C  S  I  K  V  Y  S  S  D  G  K  I  Q  E  L  S  F  S  *  I  T  V  Y  V  E  A  I  Y  Q  W  L  R  G  S  F  V  V  I  R  I  Q  S  F  H  G  E  T  E  T  P  F  G  W  K  I  I  Y  C  M  N  A  N  F  T  F  M  E  S  L  P  *  Y  I  L  H  L  K  K  E  A  *  H  H  S  T  P  H  K  Q  F  D  L  S  L  L  M  I  D  S  S  L  K  R  K  R  E  H  V  T  T  R  Y  *  K  Q  K  H  L  T  R  Q  S  E  Q  S  Q  L  Q  T  L  E  E  R  G  A  F  *  I  T  M  L  T  M  I  P  I  S  S  P  D  D  S  Q  K  A  *  A  P  I  D  S  H  E  K  V  T  I  T  C  L  G  R  F  R  S  Y  N  E  F  *  V  D  N  I  C  R  D  S  S  F  S  S  S  S  L  N  P  N  T   </second_frame>
            <third_frame>   L  L  L  N  R  E  T  F  V  L  S  K  Y  I  P  R  M  V  K  Y  K  N  Y  P  L  A  K  *  Q  F  M  L  R  Q  S  T  N  G  *  E  D  L  L  S  L  S  E  F  S  H  S  M  E  R  L  K  L  L  L  V  G  K  L  Y  I  V  *  M  Q  I  S  H  L  W  K  A  F  H  D  T  F  C  I  L  R  K  K  L  D  T  T  Q  L  P  I  N  S  L  I  *  V  F  S  *  *  T  A  P  S  R  E  K  E  N  M  L  Q  L  D  T  R  N  K  S  I  *  L  G  S  Q  S  N  L  N  S  K  H  W  R  S  G  E  L  S  K  S  P  C  L  L  *  F  Q  F  L  H  L  T  I  V  K  K  H  K  H  Q  L  T  H  M  K  K  *  P  L  H  V  L  D  D  L  E  A  I  M  N  F  K  S  I  I  S  A  E  T  L  P  F  P  H  H  H  *  I  P  I  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107D06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="37499" PGL_stop="34746"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37499" e_stop="36693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="37499" e_stop="36693" e_length="807"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37499" stop="36693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37499" stop="36891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320541" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATAGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTTGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAACTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGATGTTATTCAGTTCCAATGACTCTCTCCGTTTTAATTTGTTTGTCTGTTTTAACTTGATATGGAGATATGGAGTTTAAGAAGTAGTTTCAAATGGTGGAAGATAAACCAGTAAACAAGGGAAATAAAATAACAAAAACTCCTAAAATGGTGGAACAAAAAATACAACCTATGCAATAAAACAAGTACTAACAAATGGTGA</gDNA_template>
            <first_frame> F  F  V  D  S  *  N  S  S  F  T  K  L  K  N  L  H  R  N  G  P  S  R  I  N  Q  Q  P  N  R  R  I  L  N  A  S  Q  T  C  F  L  H  *  G  *  R  G  H  H  E  H  G  L  L  P  F  V  D  P  C  S  V  G  S  H  S  S  G  F  K  W  P  D  P  *  P  I  A  Q  F  P  Q  I  E  V  Y  *  *  T  K  L  S  F  F  S  D  C  *  G  C  L  C  *  W  *  P  *  W  W  A  S  T  F  G  C  *  *  R  L  G  *  T  D  F  A  S  *  A  F  F  Q  T  D  C  G  Q  C  L  *  G  Y  F  F  F  C  *  F  S  E  K  G  S  I  F  N  A  P  F  L  F  R  A  I  F  F  Q  F  F  K  Y  N  *  L  I  L  L  *  N  A  *  *  D  N  C  Y  M  K  R  S  V  E  F  E  F  L  S  C  L  W  G  N  F  D  V  I  Q  F  Q  *  L  S  P  F  *  F  V  C  L  F  *  L  D  M  E  I  W  S  L  R  S  S  F  K  W  W  K  I  N  Q  *  T  R  E  I  K  *  Q  K  L  L  K  W  W  N  K  K  Y  N  L  C  N  K  T  S  T  N  K  W  * </first_frame>
            <second_frame>  F  L  L  T  H  K  I  L  H  S  Q  N  S  K  I  S  I  E  M  D  L  Q  E  S  I  S  N  Q  T  G  V  S  L  T  L  A  K  H  V  F  S  T  E  V  K  G  D  T  T  N  M  V  F  S  P  L  S  I  H  V  V  L  G  L  I  A  A  G  S  N  G  P  T  R  D  Q  L  L  S  F  L  K  S  K  C  T  D  E  L  N  S  L  S  S  Q  I  V  E  V  V  F  A  D  G  S  P  S  G  G  P  R  L  S  V  A  N  S  V  W  V  E  Q  T  L  P  L  K  H  S  F  K  Q  I  V  D  N  V  Y  K  A  T  S  S  S  V  D  F  Q  K  K  V  R  F  L  T  P  H  F  Y  L  E  L  F  S  F  N  F  S  N  I  T  D  *  F  C  Y  E  M  L  D  E  I  T  V  I  *  R  D  L  L  N  L  S  F  *  V  V  Y  G  E  I  L  M  L  F  S  S  N  D  S  L  R  F  N  L  F  V  C  F  N  L  I  W  R  Y  G  V  *  E  V  V  S  N  G  G  R  *  T  S  K  Q  G  K  *  N  N  K  N  S  *  N  G  G  T  K  N  T  T  Y  A  I  K  Q  V  L  T  N  G   </second_frame>
            <third_frame>   F  C  *  L  I  K  F  F  I  H  K  T  Q  K  S  P  *  K  W  T  F  K  N  Q  S  A  T  K  Q  A  Y  P  *  R  *  P  N  M  F  S  P  L  R  L  K  G  T  P  R  T  W  S  S  P  L  C  R  S  M  *  C  W  V  S  *  Q  R  V  Q  M  A  R  P  V  T  N  C  S  V  S  S  N  R  S  V  L  M  N  *  T  L  F  L  L  R  L  L  R  L  S  L  L  M  V  A  L  V  V  G  L  D  F  R  L  L  I  A  S  G  L  N  R  L  C  L  L  S  I  L  S  N  R  L  W  T  M  F  I  R  L  L  L  L  L  L  I  F  R  K  R  F  D  F  *  R  P  I  F  I  *  S  Y  F  L  S  I  F  Q  I  *  L  I  D  S  V  M  K  C  L  M  R  *  L  L  Y  E  E  I  C  *  I  *  V  F  E  L  F  M  G  K  F  *  C  Y  S  V  P  M  T  L  S  V  L  I  C  L  S  V  L  T  *  Y  G  D  M  E  F  K  K  *  F  Q  M  V  E  D  K  P  V  N  K  G  N  K  I  T  K  T  P  K  M  V  E  Q  K  I  Q  P  M  Q  *  N  K  Y  *  Q  M  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37498" stop="36980"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLTHKILHSQNSKISIEMDLQESISNQTGVSLTLAKHVFSTEVKGDTTNMVFSPLSIHVVLGLIAAGSNGPTRDQLLSFLKSKCTDELNSLSSQIVEVVFADGSPSGGPRLSVANSVWVEQTLPLKHSFKQIVDNVYKATSSSVDFQKKVRFLTPHFYLELFSFNFSNITD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37499" e_stop="37049"/>
            <exon e_start="35742" e_stop="34746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.996"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="37499" e_stop="37049" e_length="451"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37048" i_stop="35743" i_length="1306"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="35742" e_stop="34746" e_length="997"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37499" stop="37049"/>
              <exon start="35742" stop="34746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATAGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTTGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAG : GCTGTTGAGGTTGCCAGTCAAGTGAATCAATGGGCTGAAAAGGAAACAAGTGGGCTTATCAAAGAAATACTTCCAGCTGACTCAGTTGACAGTTCAACAAGACTTGTGTTTGCAAATGCATTGTACTTTAAAGGAGCCTGGGACGAAAAGTTTGATGCATCAGTGACCAAGGAAAGTGAGTTCCACCTTCTAAATGGGACATCTATTCAAGTGCCCTTCATGACTAGCAAGACGAAGCAATATGTAAAAGCTTTTGATGGTTTCAAGGTGTTAGGCCTTCCGTATAAACAAGGTGAGGATAGACGCCGTTTCTCCATGTACTTCTTTCTGCCTGATGCCAATGATGGACTGCCAGCTTTGGTAGACAAGGTCAGTTCTGAATCCCGATTCTTGGAGCGACACCTTCCATATCAAAAGGTTGGAGTCGGTGAATTCCGTATCCCCAAATTTAAAATATCATTTGGATTTGAAGCTTCTAACGTTCTGAAAGGGCTTGGCCTGGTATTACCTTTCTCTGGTGATGGCCTCACTGAGATGGTAGACTCCCCCGTTGGCAGTAACCTTTATGTTTCTAACATCTTTCACAAGTCCTTTATTGAGGTAAATGAAGAGGGAACAGAAGCTGCAGCTGCAACTGCTGGTGTTGTTAAACTAAGAGGATTGATGATGGAAGAGAAAGTAGACTTTGTTGCTGATCATCCATACCTCTTCCTGATTAGAGAAGATGCAACAGGCGTGGTACTGTTTGTTGGTAGTATACTTAATCCTCTCGCTGAGTAAGTCGTATTCCACTATATTGAGATTGATATATGTTGCTTGTATCTTCTTTGTATCACCCTCGGACTACTTTAGTACCCTGAGTTAGCTCAAACCACCTTCTTGCCCTTCTATCTCAACCGATACTGTGAGTTCAATTTGCCAACTGCTCTTTGTATGTTTGAAATTCAGTGTGACTTGTAATGCCCTACCGTGTACTATGAAATAATTGACATCAAAG</gDNA_template>
            <first_frame> F  F  V  D  S  *  N  S  S  F  T  K  L  K  N  L  H  R  N  G  P  S  R  I  N  Q  Q  P  N  R  R  I  L  N  A  S  Q  T  C  F  L  H  *  G  *  R  G  H  H  E  H  G  L  L  P  F  V  D  P  C  S  V  G  S  H  S  S  G  F  K  W  P  D  P  *  P  I  A  Q  F  P  Q  I  E  V  Y  *  *  T  K  L  S  F  F  S  D  C  *  G  C  L  C  *  W  *  P  *  W  W  A  S  T  F  G  C  *  *  R  L  G  *  T  D  F  A  S  *  A  F  F  Q  T  D  C  G  Q  C  L  *  G  Y  F  F  F  C  *  F  S  E  K   : G  C  *  G  C  Q  S  S  E  S  M  G  *  K  G  N  K  W  A  Y  Q  R  N  T  S  S  *  L  S  *  Q  F  N  K  T  C  V  C  K  C  I  V  L  *  R  S  L  G  R  K  V  *  C  I  S  D  Q  G  K  *  V  P  P  S  K  W  D  I  Y  S  S  A  L  H  D  *  Q  D  E  A  I  C  K  S  F  *  W  F  Q  G  V  R  P  S  V  *  T  R  *  G  *  T  P  F  L  H  V  L  L  S  A  *  C  Q  *  W  T  A  S  F  G  R  Q  G  Q  F  *  I  P  I  L  G  A  T  P  S  I  S  K  G  W  S  R  *  I  P  Y  P  Q  I  *  N  I  I  W  I  *  S  F  *  R  S  E  R  A  W  P  G  I  T  F  L  W  *  W  P  H  *  D  G  R  L  P  R  W  Q  *  P  L  C  F  *  H  L  S  Q  V  L  Y  *  G  K  *  R  G  N  R  S  C  S  C  N  C  W  C  C  *  T  K  R  I  D  D  G  R  E  S  R  L  C  C  *  S  S  I  P  L  P  D  *  R  R  C  N  R  R  G  T  V  C  W  *  Y  T  *  S  S  R  *  V  S  R  I  P  L  Y  *  D  *  Y  M  L  L  V  S  S  L  Y  H  P  R  T  T  L  V  P  *  V  S  S  N  H  L  L  A  L  L  S  Q  P  I  L  *  V  Q  F  A  N  C  S  L  Y  V  *  N  S  V  *  L  V  M  P  Y  R  V  L  *  N  N  *  H  Q   </first_frame>
            <second_frame>  F  L  L  T  H  K  I  L  H  S  Q  N  S  K  I  S  I  E  M  D  L  Q  E  S  I  S  N  Q  T  G  V  S  L  T  L  A  K  H  V  F  S  T  E  V  K  G  D  T  T  N  M  V  F  S  P  L  S  I  H  V  V  L  G  L  I  A  A  G  S  N  G  P  T  R  D  Q  L  L  S  F  L  K  S  K  C  T  D  E  L  N  S  L  S  S  Q  I  V  E  V  V  F  A  D  G  S  P  S  G  G  P  R  L  S  V  A  N  S  V  W  V  E  Q  T  L  P  L  K  H  S  F  K  Q  I  V  D  N  V  Y  K  A  T  S  S  S  V  D  F  Q  K  K  :  A  V  E  V  A  S  Q  V  N  Q  W  A  E  K  E  T  S  G  L  I  K  E  I  L  P  A  D  S  V  D  S  S  T  R  L  V  F  A  N  A  L  Y  F  K  G  A  W  D  E  K  F  D  A  S  V  T  K  E  S  E  F  H  L  L  N  G  T  S  I  Q  V  P  F  M  T  S  K  T  K  Q  Y  V  K  A  F  D  G  F  K  V  L  G  L  P  Y  K  Q  G  E  D  R  R  R  F  S  M  Y  F  F  L  P  D  A  N  D  G  L  P  A  L  V  D  K  V  S  S  E  S  R  F  L  E  R  H  L  P  Y  Q  K  V  G  V  G  E  F  R  I  P  K  F  K  I  S  F  G  F  E  A  S  N  V  L  K  G  L  G  L  V  L  P  F  S  G  D  G  L  T  E  M  V  D  S  P  V  G  S  N  L  Y  V  S  N  I  F  H  K  S  F  I  E  V  N  E  E  G  T  E  A  A  A  A  T  A  G  V  V  K  L  R  G  L  M  M  E  E  K  V  D  F  V  A  D  H  P  Y  L  F  L  I  R  E  D  A  T  G  V  V  L  F  V  G  S  I  L  N  P  L  A  E  *  V  V  F  H  Y  I  E  I  D  I  C  C  L  Y  L  L  C  I  T  L  G  L  L  *  Y  P  E  L  A  Q  T  T  F  L  P  F  Y  L  N  R  Y  C  E  F  N  L  P  T  A  L  C  M  F  E  I  Q  C  D  L  *  C  P  T  V  Y  Y  E  I  I  D  I  K  </second_frame>
            <third_frame>   F  C  *  L  I  K  F  F  I  H  K  T  Q  K  S  P  *  K  W  T  F  K  N  Q  S  A  T  K  Q  A  Y  P  *  R  *  P  N  M  F  S  P  L  R  L  K  G  T  P  R  T  W  S  S  P  L  C  R  S  M  *  C  W  V  S  *  Q  R  V  Q  M  A  R  P  V  T  N  C  S  V  S  S  N  R  S  V  L  M  N  *  T  L  F  L  L  R  L  L  R  L  S  L  L  M  V  A  L  V  V  G  L  D  F  R  L  L  I  A  S  G  L  N  R  L  C  L  L  S  I  L  S  N  R  L  W  T  M  F  I  R  L  L  L  L  L  L  I  F  R  K  R :   L  L  R  L  P  V  K  *  I  N  G  L  K  R  K  Q  V  G  L  S  K  K  Y  F  Q  L  T  Q  L  T  V  Q  Q  D  L  C  L  Q  M  H  C  T  L  K  E  P  G  T  K  S  L  M  H  Q  *  P  R  K  V  S  S  T  F  *  M  G  H  L  F  K  C  P  S  *  L  A  R  R  S  N  M  *  K  L  L  M  V  S  R  C  *  A  F  R  I  N  K  V  R  I  D  A  V  S  P  C  T  S  F  C  L  M  P  M  M  D  C  Q  L  W  *  T  R  S  V  L  N  P  D  S  W  S  D  T  F  H  I  K  R  L  E  S  V  N  S  V  S  P  N  L  K  Y  H  L  D  L  K  L  L  T  F  *  K  G  L  A  W  Y  Y  L  S  L  V  M  A  S  L  R  W  *  T  P  P  L  A  V  T  F  M  F  L  T  S  F  T  S  P  L  L  R  *  M  K  R  E  Q  K  L  Q  L  Q  L  L  V  L  L  N  *  E  D  *  *  W  K  R  K  *  T  L  L  L  I  I  H  T  S  S  *  L  E  K  M  Q  Q  A  W  Y  C  L  L  V  V  Y  L  I  L  S  L  S  K  S  Y  S  T  I  L  R  L  I  Y  V  A  C  I  F  F  V  S  P  S  D  Y  F  S  T  L  S  *  L  K  P  P  S  C  P  S  I  S  T  D  T  V  S  S  I  C  Q  L  L  F  V  C  L  K  F  S  V  T  C  N  A  L  P  C  T  M  K  *  L  T  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37498" stop="37049"/>
                    <exon start="35742" stop="34963"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1227</number_coding_nucleotides>
                  <number_encoded_amino_acids>409</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLTHKILHSQNSKISIEMDLQESISNQTGVSLTLAKHVFSTEVKGDTTNMVFSPLSIHVVLGLIAAGSNGPTRDQLLSFLKSKCTDELNSLSSQIVEVVFADGSPSGGPRLSVANSVWVEQTLPLKHSFKQIVDNVYKATSSSVDFQKKAVEVASQVNQWAEKETSGLIKEILPADSVDSSTRLVFANALYFKGAWDEKFDASVTKESEFHLLNGTSIQVPFMTSKTKQYVKAFDGFKVLGLPYKQGEDRRRFSMYFFLPDANDGLPALVDKVSSESRFLERHLPYQKVGVGEFRIPKFKISFGFEASNVLKGLGLVLPFSGDGLTEMVDSPVGSNLYVSNIFHKSFIEVNEEGTEAAAATAGVVKLRGLMMEEKVDFVADHPYLFLIREDATGVVLFVGSILNPLAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="41882" PGL_stop="39989"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41882" e_stop="41306"/>
            <exon e_start="40948" e_stop="39989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.953" e_score="0.991"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="41882" e_stop="41306" e_length="577"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.953">
            <gDNA_intron_boundary i_start="41305" i_stop="40949" i_length="357"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="40948" e_stop="39989" e_length="960"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41882" stop="41306"/>
              <exon start="40948" stop="39989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGATCTTCAGAGAAATTAAAAGTCTTTATTTGTTGTTATGTGTTTTACTGAATCAAATTCAAATGCAAAACCCCACCTGTTAAGTAACAGATTAGTATATAAATTCTTGCAAACCTTTCAACTTTGTGATCATTCATTCTACTCACTATCCTCCTTCTTCTTCTTCGTTTTCGCGTGCAAATATGGATCTTCGAGAGTCAATCACCAGCCAGACTGATGTTTCTTTCATGCTTGCTAAGCATGTTTTCTCCAACGCGGTTAAAGGCGATACCAACCTGGTGCTCTCTCCTCTTTCAATTCAAATAGTTCTTGGCCTTATTGCTGCTGGCTCTAATGGACCTACTCAGAATCAGCTACTCTCTTTCCTCAAGTCCAGTTCCATTGATGAACTCAACTCTCTTTATTCACATATTTCCAGTTTCGTCTTTGCTGATGGCAGCCCCAATGGAGGTCCGCGATTGTCCGTTGCTAATGGTATTTGGATCGATCAAACGCTGCCTTTAAGGCCTTCTTTCAAACAGGTTGTGGATAATGTTTACAAGGCTGCTTCAGAATATGTTGATTTTCAAAACAAG : GCTGCTGAAGTTGTCGATCAAGTCAATCAGTGGACTAAAATGAAGACAAATGGTCTCATCGAAGAGATTCTTGATCGTGATGCAGTGGACAACATGACGAGGCTGATCTTGGCCAATGCACTATATTTCAAAGGTGAATGGAATGAGAAGTTCGATGCTTCAGAAACAAAAGACCATGAGTTCCATCTCCTCGATGCATTGCCTATTCGAGTACCCTTCATGACTAGCAAGAAGAAGCAGTACATAGCAGGATTTAATGGCTTTAAAGTGTTGAAGTTTCCTTATAAACAGGGCACAGATACACGTTGCTTCTCAATGTATTTCATTCTCCCAGATGCACATGATGGATTGCCCGCTTTATTTGATAAAATTAGTACAGAACCTGGATTCTTAACTCACCACGTTCCATTTAGAAAAGTCAGGGTGGGCAAGTTTCTTATTCCTAAATTCAAAATAACCTTCGAGTTTGAAGCTTCCGACATTCTAAAGGGACTTGGGCTAACATTACCTTTCTGTGGTGGTGGTCTCACTGAGATGGTTGATTCCACTTTACCTGAGAATCCATCTGTTTCAAAAGTTTTTCACAAGTCTTTCATTGAGATAAATGAGGAAGGCACCGAAGCTGCAGCTGTTACAGCTGGTGTAATAATGACCACGTCTCTTAGAATTGAGAAAGAAATCGACTTTGTTGCTGACCATCCATTCCTGTTCCTTATAAGAGACGACGCTACTGGTGTTGTGTTGTTCATAGGGAGCGTGCTGAATCCTCTTTCTGGTTAATAAGACCATATAGCATGATTATATACAACTTTGTAAAGAAGGACAGTTCACAGTTTCCTCTCTTGTGTTTCTGTTTGATGAGAGATGCTATGTATCTAAATAACCAGTTTCCAGATTTGTGTATTATTTTGATGAGATCTTCTACTGTCTTTTGCACCTTATATAATTGACTCTTCTATG</gDNA_template>
            <first_frame> C  D  L  Q  R  N  *  K  S  L  F  V  V  M  C  F  T  E  S  N  S  N  A  K  P  H  L  L  S  N  R  L  V  Y  K  F  L  Q  T  F  Q  L  C  D  H  S  F  Y  S  L  S  S  F  F  F  F  V  F  A  C  K  Y  G  S  S  R  V  N  H  Q  P  D  *  C  F  F  H  A  C  *  A  C  F  L  Q  R  G  *  R  R  Y  Q  P  G  A  L  S  S  F  N  S  N  S  S  W  P  Y  C  C  W  L  *  W  T  Y  S  E  S  A  T  L  F  P  Q  V  Q  F  H  *  *  T  Q  L  S  L  F  T  Y  F  Q  F  R  L  C  *  W  Q  P  Q  W  R  S  A  I  V  R  C  *  W  Y  L  D  R  S  N  A  A  F  K  A  F  F  Q  T  G  C  G  *  C  L  Q  G  C  F  R  I  C  *  F  S  K  Q   : G  C  *  S  C  R  S  S  Q  S  V  D  *  N  E  D  K  W  S  H  R  R  D  S  *  S  *  C  S  G  Q  H  D  E  A  D  L  G  Q  C  T  I  F  Q  R  *  M  E  *  E  V  R  C  F  R  N  K  R  P  *  V  P  S  P  R  C  I  A  Y  S  S  T  L  H  D  *  Q  E  E  A  V  H  S  R  I  *  W  L  *  S  V  E  V  S  L  *  T  G  H  R  Y  T  L  L  L  N  V  F  H  S  P  R  C  T  *  W  I  A  R  F  I  *  *  N  *  Y  R  T  W  I  L  N  S  P  R  S  I  *  K  S  Q  G  G  Q  V  S  Y  S  *  I  Q  N  N  L  R  V  *  S  F  R  H  S  K  G  T  W  A  N  I  T  F  L  W  W  W  S  H  *  D  G  *  F  H  F  T  *  E  S  I  C  F  K  S  F  S  Q  V  F  H  *  D  K  *  G  R  H  R  S  C  S  C  Y  S  W  C  N  N  D  H  V  S  *  N  *  E  R  N  R  L  C  C  *  P  S  I  P  V  P  Y  K  R  R  R  Y  W  C  C  V  V  H  R  E  R  A  E  S  S  F  W  L  I  R  P  Y  S  M  I  I  Y  N  F  V  K  K  D  S  S  Q  F  P  L  L  C  F  C  L  M  R  D  A  M  Y  L  N  N  Q  F  P  D  L  C  I  I  L  M  R  S  S  T  V  F  C  T  L  Y  N  *  L  F  Y  </first_frame>
            <second_frame>  V  I  F  R  E  I  K  S  L  Y  L  L  L  C  V  L  L  N  Q  I  Q  M  Q  N  P  T  C  *  V  T  D  *  Y  I  N  S  C  K  P  F  N  F  V  I  I  H  S  T  H  Y  P  P  S  S  S  S  F  S  R  A  N  M  D  L  R  E  S  I  T  S  Q  T  D  V  S  F  M  L  A  K  H  V  F  S  N  A  V  K  G  D  T  N  L  V  L  S  P  L  S  I  Q  I  V  L  G  L  I  A  A  G  S  N  G  P  T  Q  N  Q  L  L  S  F  L  K  S  S  S  I  D  E  L  N  S  L  Y  S  H  I  S  S  F  V  F  A  D  G  S  P  N  G  G  P  R  L  S  V  A  N  G  I  W  I  D  Q  T  L  P  L  R  P  S  F  K  Q  V  V  D  N  V  Y  K  A  A  S  E  Y  V  D  F  Q  N  K  :  A  A  E  V  V  D  Q  V  N  Q  W  T  K  M  K  T  N  G  L  I  E  E  I  L  D  R  D  A  V  D  N  M  T  R  L  I  L  A  N  A  L  Y  F  K  G  E  W  N  E  K  F  D  A  S  E  T  K  D  H  E  F  H  L  L  D  A  L  P  I  R  V  P  F  M  T  S  K  K  K  Q  Y  I  A  G  F  N  G  F  K  V  L  K  F  P  Y  K  Q  G  T  D  T  R  C  F  S  M  Y  F  I  L  P  D  A  H  D  G  L  P  A  L  F  D  K  I  S  T  E  P  G  F  L  T  H  H  V  P  F  R  K  V  R  V  G  K  F  L  I  P  K  F  K  I  T  F  E  F  E  A  S  D  I  L  K  G  L  G  L  T  L  P  F  C  G  G  G  L  T  E  M  V  D  S  T  L  P  E  N  P  S  V  S  K  V  F  H  K  S  F  I  E  I  N  E  E  G  T  E  A  A  A  V  T  A  G  V  I  M  T  T  S  L  R  I  E  K  E  I  D  F  V  A  D  H  P  F  L  F  L  I  R  D  D  A  T  G  V  V  L  F  I  G  S  V  L  N  P  L  S  G  *  *  D  H  I  A  *  L  Y  T  T  L  *  R  R  T  V  H  S  F  L  S  C  V  S  V  *  *  E  M  L  C  I  *  I  T  S  F  Q  I  C  V  L  F  *  *  D  L  L  L  S  F  A  P  Y  I  I  D  S  S  M </second_frame>
            <third_frame>   *  S  S  E  K  L  K  V  F  I  C  C  Y  V  F  Y  *  I  K  F  K  C  K  T  P  P  V  K  *  Q  I  S  I  *  I  L  A  N  L  S  T  L  *  S  F  I  L  L  T  I  L  L  L  L  L  R  F  R  V  Q  I  W  I  F  E  S  Q  S  P  A  R  L  M  F  L  S  C  L  L  S  M  F  S  P  T  R  L  K  A  I  P  T  W  C  S  L  L  F  Q  F  K  *  F  L  A  L  L  L  L  A  L  M  D  L  L  R  I  S  Y  S  L  S  S  S  P  V  P  L  M  N  S  T  L  F  I  H  I  F  P  V  S  S  L  L  M  A  A  P  M  E  V  R  D  C  P  L  L  M  V  F  G  S  I  K  R  C  L  *  G  L  L  S  N  R  L  W  I  M  F  T  R  L  L  Q  N  M  L  I  F  K  T  R :   L  L  K  L  S  I  K  S  I  S  G  L  K  *  R  Q  M  V  S  S  K  R  F  L  I  V  M  Q  W  T  T  *  R  G  *  S  W  P  M  H  Y  I  S  K  V  N  G  M  R  S  S  M  L  Q  K  Q  K  T  M  S  S  I  S  S  M  H  C  L  F  E  Y  P  S  *  L  A  R  R  S  S  T  *  Q  D  L  M  A  L  K  C  *  S  F  L  I  N  R  A  Q  I  H  V  A  S  Q  C  I  S  F  S  Q  M  H  M  M  D  C  P  L  Y  L  I  K  L  V  Q  N  L  D  S  *  L  T  T  F  H  L  E  K  S  G  W  A  S  F  L  F  L  N  S  K  *  P  S  S  L  K  L  P  T  F  *  R  D  L  G  *  H  Y  L  S  V  V  V  V  S  L  R  W  L  I  P  L  Y  L  R  I  H  L  F  Q  K  F  F  T  S  L  S  L  R  *  M  R  K  A  P  K  L  Q  L  L  Q  L  V  *  *  *  P  R  L  L  E  L  R  K  K  S  T  L  L  L  T  I  H  S  C  S  L  *  E  T  T  L  L  V  L  C  C  S  *  G  A  C  *  I  L  F  L  V  N  K  T  I  *  H  D  Y  I  Q  L  C  K  E  G  Q  F  T  V  S  S  L  V  F  L  F  D  E  R  C  Y  V  S  K  *  P  V  S  R  F  V  Y  Y  F  D  E  I  F  Y  C  L  L  H  L  I  *  L  T  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41785" stop="41306"/>
                    <exon start="40948" stop="40169"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1257</number_coding_nucleotides>
                  <number_encoded_amino_acids>419</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YINSCKPFNFVIIHSTHYPPSSSSFSRANMDLRESITSQTDVSFMLAKHVFSNAVKGDTNLVLSPLSIQIVLGLIAAGSNGPTQNQLLSFLKSSSIDELNSLYSHISSFVFADGSPNGGPRLSVANGIWIDQTLPLRPSFKQVVDNVYKAASEYVDFQNKAAEVVDQVNQWTKMKTNGLIEEILDRDAVDNMTRLILANALYFKGEWNEKFDASETKDHEFHLLDALPIRVPFMTSKKKQYIAGFNGFKVLKFPYKQGTDTRCFSMYFILPDAHDGLPALFDKISTEPGFLTHHVPFRKVRVGKFLIPKFKITFEFEASDILKGLGLTLPFCGGGLTEMVDSTLPENPSVSKVFHKSFIEINEEGTEAAAVTAGVIMTTSLRIEKEIDFVADHPFLFLIRDDATGVVLFIGSVLNPLSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="43880" PGL_stop="42830"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43880" e_stop="43400"/>
            <exon e_start="43298" e_stop="42830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.967" e_score="0.998"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="43880" e_stop="43400" e_length="481"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.967">
            <gDNA_intron_boundary i_start="43399" i_stop="43299" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="43298" e_stop="42830" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43880" stop="43400"/>
              <exon start="43298" stop="42830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATATACCCGTCATGGGACTAACTCACTCTCGCTCTCATCATTCTCATTCTTATTCGTCTAGTTCTTTCCATGATCAACGTATTGATATGGAAATGAGTGAATCAATCACCACCCAAACGGGTGTTTCTTTCATTCTCGCAAAGCATGTCTTTTCCAAAGAGATTAAAGGCGATACCAACCTCGTGTTCTCTCCTCTCTCGATTCAAATAGTACTAGGCCTGATTGCTGCAGGCTCAAAGGGGCCAACTAAGGATCAACTACTCTGTTTCCTCAAGTCCAAATCCATCGATGAACTCAATTCTCTGTATTCTCATCTTGTCAATATCGTCTTTGTTGATGGAAGCCCCAATGGAGGTCCACGTTTGTCCGTTGCTAATAGTGTTTGGATCGATCAAACACTGCCTTTTAAGCCTTCTTTTAAAAAGGTTGTGGATAACATTTACAAGGCTGCTTCAAATTCTGTTGATTTTCAGAACAAG : GCTACTGAAGTTGCCAACCATGTCAATCATTGGGCCAAAATGAAGACAAATGATCTCATCAAAGAGATTCTTCCTCATGGTACAGTAAACAATATGACAAGGCTCATCTTTGCAAACGCGCTATATTTTAAAGGAGTGTGGAACGACAAGTTCAATGCTTCAGAAACAAAAGACTATGAATTCCATCTCCTCAGAGGAGGGTCTATTAAAGCACCTTTCATGACCAGTAATAAGAAGCAGTATGCAGTAGCCTTTGATGGCTTTAAAGTATTGGTACTTCATTACAAACAAGGTAGAGACACTACGCGTCATTTCTGTATGTATCTATTTTTGCCAGATGCTCGTGATGGACTACCAGCTTTAGTAGACAAAATCAATTCAGAACCAGGATTTTTAAACCACCATGTTCCGTTTGAAAAGACTAAAATGCGCAAGTTACTTATCCCTAAATTCAAAACAACTTTTGGTT</gDNA_template>
            <first_frame> P  Y  T  R  H  G  T  N  S  L  S  L  S  S  F  S  F  L  F  V  *  F  F  P  *  S  T  Y  *  Y  G  N  E  *  I  N  H  H  P  N  G  C  F  F  H  S  R  K  A  C  L  F  Q  R  D  *  R  R  Y  Q  P  R  V  L  S  S  L  D  S  N  S  T  R  P  D  C  C  R  L  K  G  A  N  *  G  S  T  T  L  F  P  Q  V  Q  I  H  R  *  T  Q  F  S  V  F  S  S  C  Q  Y  R  L  C  *  W  K  P  Q  W  R  S  T  F  V  R  C  *  *  C  L  D  R  S  N  T  A  F  *  A  F  F  *  K  G  C  G  *  H  L  Q  G  C  F  K  F  C  *  F  S  E  Q   : G  Y  *  S  C  Q  P  C  Q  S  L  G  Q  N  E  D  K  *  S  H  Q  R  D  S  S  S  W  Y  S  K  Q  Y  D  K  A  H  L  C  K  R  A  I  F  *  R  S  V  E  R  Q  V  Q  C  F  R  N  K  R  L  *  I  P  S  P  Q  R  R  V  Y  *  S  T  F  H  D  Q  *  *  E  A  V  C  S  S  L  *  W  L  *  S  I  G  T  S  L  Q  T  R  *  R  H  Y  A  S  F  L  Y  V  S  I  F  A  R  C  S  *  W  T  T  S  F  S  R  Q  N  Q  F  R  T  R  I  F  K  P  P  C  S  V  *  K  D  *  N  A  Q  V  T  Y  P  *  I  Q  N  N  F  W   </first_frame>
            <second_frame>  H  I  P  V  M  G  L  T  H  S  R  S  H  H  S  H  S  Y  S  S  S  S  F  H  D  Q  R  I  D  M  E  M  S  E  S  I  T  T  Q  T  G  V  S  F  I  L  A  K  H  V  F  S  K  E  I  K  G  D  T  N  L  V  F  S  P  L  S  I  Q  I  V  L  G  L  I  A  A  G  S  K  G  P  T  K  D  Q  L  L  C  F  L  K  S  K  S  I  D  E  L  N  S  L  Y  S  H  L  V  N  I  V  F  V  D  G  S  P  N  G  G  P  R  L  S  V  A  N  S  V  W  I  D  Q  T  L  P  F  K  P  S  F  K  K  V  V  D  N  I  Y  K  A  A  S  N  S  V  D  F  Q  N  K  :  A  T  E  V  A  N  H  V  N  H  W  A  K  M  K  T  N  D  L  I  K  E  I  L  P  H  G  T  V  N  N  M  T  R  L  I  F  A  N  A  L  Y  F  K  G  V  W  N  D  K  F  N  A  S  E  T  K  D  Y  E  F  H  L  L  R  G  G  S  I  K  A  P  F  M  T  S  N  K  K  Q  Y  A  V  A  F  D  G  F  K  V  L  V  L  H  Y  K  Q  G  R  D  T  T  R  H  F  C  M  Y  L  F  L  P  D  A  R  D  G  L  P  A  L  V  D  K  I  N  S  E  P  G  F  L  N  H  H  V  P  F  E  K  T  K  M  R  K  L  L  I  P  K  F  K  T  T  F  G  </second_frame>
            <third_frame>   I  Y  P  S  W  D  *  L  T  L  A  L  I  I  L  I  L  I  R  L  V  L  S  M  I  N  V  L  I  W  K  *  V  N  Q  S  P  P  K  R  V  F  L  S  F  S  Q  S  M  S  F  P  K  R  L  K  A  I  P  T  S  C  S  L  L  S  R  F  K  *  Y  *  A  *  L  L  Q  A  Q  R  G  Q  L  R  I  N  Y  S  V  S  S  S  P  N  P  S  M  N  S  I  L  C  I  L  I  L  S  I  S  S  L  L  M  E  A  P  M  E  V  H  V  C  P  L  L  I  V  F  G  S  I  K  H  C  L  L  S  L  L  L  K  R  L  W  I  T  F  T  R  L  L  Q  I  L  L  I  F  R  T  R :   L  L  K  L  P  T  M  S  I  I  G  P  K  *  R  Q  M  I  S  S  K  R  F  F  L  M  V  Q  *  T  I  *  Q  G  S  S  L  Q  T  R  Y  I  L  K  E  C  G  T  T  S  S  M  L  Q  K  Q  K  T  M  N  S  I  S  S  E  E  G  L  L  K  H  L  S  *  P  V  I  R  S  S  M  Q  *  P  L  M  A  L  K  Y  W  Y  F  I  T  N  K  V  E  T  L  R  V  I  S  V  C  I  Y  F  C  Q  M  L  V  M  D  Y  Q  L  *  *  T  K  S  I  Q  N  Q  D  F  *  T  T  M  F  R  L  K  R  L  K  C  A  S  Y  L  S  L  N  S  K  Q  L  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43879" stop="43400"/>
                    <exon start="43298" stop="42831"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HIPVMGLTHSRSHHSHSYSSSSFHDQRIDMEMSESITTQTGVSFILAKHVFSKEIKGDTNLVFSPLSIQIVLGLIAAGSKGPTKDQLLCFLKSKSIDELNSLYSHLVNIVFVDGSPNGGPRLSVANSVWIDQTLPFKPSFKKVVDNIYKAASNSVDFQNKATEVANHVNHWAKMKTNDLIKEILPHGTVNNMTRLIFANALYFKGVWNDKFNASETKDYEFHLLRGGSIKAPFMTSNKKQYAVAFDGFKVLVLHYKQGRDTTRHFCMYLFLPDARDGLPALVDKINSEPGFLNHHVPFEKTKMRKLLIPKFKTTFG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="53015" PGL_stop="54947"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53015" e_stop="53051"/>
            <exon e_start="53165" e_stop="53243"/>
            <exon e_start="53953" e_stop="54170"/>
            <exon e_start="54273" e_stop="54844"/>
            <exon e_start="54931" e_stop="54947"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.002" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.992" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53015" e_stop="53051" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53052" i_stop="53164" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53165" e_stop="53243" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53244" i_stop="53952" i_length="709"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53953" e_stop="54170" e_length="218"/>
          </exon>
          <intron i_serial="3" don_prob="0.002" acc_prob="0.848">
            <gDNA_intron_boundary i_start="54171" i_stop="54272" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="54273" e_stop="54844" e_length="572"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.992">
            <gDNA_intron_boundary i_start="54845" i_stop="54930" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="54931" e_stop="54947" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53015" stop="53051"/>
              <exon start="53165" stop="53243"/>
              <exon start="53953" stop="54170"/>
              <exon start="54273" stop="54844"/>
              <exon start="54931" stop="54947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGGCTTAGCAAAAGAGAAGCTTACAATCTAAATG : GGGATTTGCAGAAATGTCAAGACTGAAGAAAAGCAACTTCAAAAGAAGGGGGGAACTAGAGCAGCTCTTTTTGTCTATG : TTGTGGCGGGAATCGATACCATGGCTTTTATTTCAAAGGGTGTGAGCCTGGTGACTTACTTCTCTGGGTATATGAACTTCAGCTTAACGAAATCTGCCAACACTGTGACAAACTTCATGGGAACAGCGTTTTTGCTCTCATTATTTGGAGCGTTTCTCTCAGATACTTACTTCTCCAGATTCAAGACTTGTGTCCTATTTAGCATCATTCAAGTTTTG : GGATTTGCACTGCTAGGAGTTCAAGCGCATTTCAGTCAACTGAGACCATTTCCCTGCAAGGATGTACCTTTAAGCCAAAACGATCAATGTGAATCTGCAGATGCAGGCCAATTGGCAATCTTGTATGGAGGTGTTTATCTGGTAGCACTTGGAAACAGTGGAGTCAAAGCGGCTTTGCCATCATTAGGTGCTGATCAATTTGATGAAAAGGGTCCCAAAGGGGCTGCTAAGCTATCAAGTTACTTCAATTGGCTACTGTTCTTCATCACCATCGGAGCCATGCTTGGAGTTACATTGTTTGTTTGGATAGGTGACAATCAGGGATGGGATTGGTCATTTGGTATCTGTTCTGTAGCAATTGGTTTGTCAACCCTACTCTTGACCATGGGAAAACAGTTTTACAGAAACAATGTTCCTAAAGGTAGCCCTCTGATGCGTATTTCGCAGGTTCTTGTTGCAGCTTTTAGAAACAGAAATCTCCCACTACCACAAAACAATGAAGATTTACATCAGATCAGAAGTGAAGAGGCTGAAAATGGAATAGAGATTATTCAAAGGACTGATCAATTCAA : ATGCTTGGACAGGGCAG</gDNA_template>
            <first_frame> V  W  L  S  K  R  E  A  Y  N  L  N   : G  D  L  Q  K  C  Q  D  *  R  K  A  T  S  K  E  G  G  N  *  S  S  S  F  C  L  C :   C  G  G  N  R  Y  H  G  F  Y  F  K  G  C  E  P  G  D  L  L  L  W  V  Y  E  L  Q  L  N  E  I  C  Q  H  C  D  K  L  H  G  N  S  V  F  A  L  I  I  W  S  V  S  L  R  Y  L  L  L  Q  I  Q  D  L  C  P  I  *  H  H  S  S  F   : G  I  C  T  A  R  S  S  S  A  F  Q  S  T  E  T  I  S  L  Q  G  C  T  F  K  P  K  R  S  M  *  I  C  R  C  R  P  I  G  N  L  V  W  R  C  L  S  G  S  T  W  K  Q  W  S  Q  S  G  F  A  I  I  R  C  *  S  I  *  *  K  G  S  Q  R  G  C  *  A  I  K  L  L  Q  L  A  T  V  L  H  H  H  R  S  H  A  W  S  Y  I  V  C  L  D  R  *  Q  S  G  M  G  L  V  I  W  Y  L  F  C  S  N  W  F  V  N  P  T  L  D  H  G  K  T  V  L  Q  K  Q  C  S  *  R  *  P  S  D  A  Y  F  A  G  S  C  C  S  F  *  K  Q  K  S  P  T  T  T  K  Q  *  R  F  T  S  D  Q  K  *  R  G  *  K  W  N  R  D  Y  S  K  D  *  S  I  Q  :  M  L  G  Q  G   </first_frame>
            <second_frame>  F  G  L  A  K  E  K  L  T  I  *  M  :  G  I  C  R  N  V  K  T  E  E  K  Q  L  Q  K  K  G  G  T  R  A  A  L  F  V  Y   : V  V  A  G  I  D  T  M  A  F  I  S  K  G  V  S  L  V  T  Y  F  S  G  Y  M  N  F  S  L  T  K  S  A  N  T  V  T  N  F  M  G  T  A  F  L  L  S  L  F  G  A  F  L  S  D  T  Y  F  S  R  F  K  T  C  V  L  F  S  I  I  Q  V  L  :  G  F  A  L  L  G  V  Q  A  H  F  S  Q  L  R  P  F  P  C  K  D  V  P  L  S  Q  N  D  Q  C  E  S  A  D  A  G  Q  L  A  I  L  Y  G  G  V  Y  L  V  A  L  G  N  S  G  V  K  A  A  L  P  S  L  G  A  D  Q  F  D  E  K  G  P  K  G  A  A  K  L  S  S  Y  F  N  W  L  L  F  F  I  T  I  G  A  M  L  G  V  T  L  F  V  W  I  G  D  N  Q  G  W  D  W  S  F  G  I  C  S  V  A  I  G  L  S  T  L  L  L  T  M  G  K  Q  F  Y  R  N  N  V  P  K  G  S  P  L  M  R  I  S  Q  V  L  V  A  A  F  R  N  R  N  L  P  L  P  Q  N  N  E  D  L  H  Q  I  R  S  E  E  A  E  N  G  I  E  I  I  Q  R  T  D  Q  F  K :   C  L  D  R  A  </second_frame>
            <third_frame>   L  A  *  Q  K  R  S  L  Q  S  K  W :   G  F  A  E  M  S  R  L  K  K  S  N  F  K  R  R  G  E  L  E  Q  L  F  L  S  M  :  L  W  R  E  S  I  P  W  L  L  F  Q  R  V  *  A  W  *  L  T  S  L  G  I  *  T  S  A  *  R  N  L  P  T  L  *  Q  T  S  W  E  Q  R  F  C  S  H  Y  L  E  R  F  S  Q  I  L  T  S  P  D  S  R  L  V  S  Y  L  A  S  F  K  F  W :   D  L  H  C  *  E  F  K  R  I  S  V  N  *  D  H  F  P  A  R  M  Y  L  *  A  K  T  I  N  V  N  L  Q  M  Q  A  N  W  Q  S  C  M  E  V  F  I  W  *  H  L  E  T  V  E  S  K  R  L  C  H  H  *  V  L  I  N  L  M  K  R  V  P  K  G  L  L  S  Y  Q  V  T  S  I  G  Y  C  S  S  S  P  S  E  P  C  L  E  L  H  C  L  F  G  *  V  T  I  R  D  G  I  G  H  L  V  S  V  L  *  Q  L  V  C  Q  P  Y  S  *  P  W  E  N  S  F  T  E  T  M  F  L  K  V  A  L  *  C  V  F  R  R  F  L  L  Q  L  L  E  T  E  I  S  H  Y  H  K  T  M  K  I  Y  I  R  S  E  V  K  R  L  K  M  E  *  R  L  F  K  G  L  I  N  S   : N  A  W  T  G  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53049" stop="53051"/>
                    <exon start="53165" stop="53243"/>
                    <exon start="53953" stop="54170"/>
                    <exon start="54273" stop="54844"/>
                    <exon start="54931" stop="54946"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGICRNVKTEEKQLQKKGGTRAALFVYVVAGIDTMAFISKGVSLVTYFSGYMNFSLTKSANTVTNFMGTAFLLSLFGAFLSDTYFSRFKTCVLFSIIQVLGFALLGVQAHFSQLRPFPCKDVPLSQNDQCESADAGQLAILYGGVYLVALGNSGVKAALPSLGADQFDEKGPKGAAKLSSYFNWLLFFITIGAMLGVTLFVWIGDNQGWDWSFGICSVAIGLSTLLLTMGKQFYRNNVPKGSPLMRISQVLVAAFRNRNLPLPQNNEDLHQIRSEEAENGIEIIQRTDQFKCLDRA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="55002" PGL_stop="55542"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55002" e_stop="55542"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="55002" e_stop="55542" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55002" stop="55542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344854" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTTTGTACTATCTCACAAGTTGAAGAAACAAAGATTGTAGTAAGAATGCTCCCAATTATACTGAGCACTGTCTTCATGAACACTTGCATGGCTCAACTCCAGACTTTCACTATCCAACAAAGCATGACAATGAACAGAAAAATCCGAAACTTTGAAATCCCAGGGCCTTCCATACCTGTAATTCCTCAAGTATTCCAACTCATCATGATCCCAGTCTATGATCGTATCTTTGTTCCGATAGCAAGAAAGTTCACAGGGATCCCTTCTGGTATTCGACAACTGCAACGTATAGGTGTTGGACTAGTATTTTCAGTAGTATCTATGGCAGTGGCTGCAGTTGTAGAAAGTCACAGAAAATCAGTTGCCATTGAGCATAACATGGTTGACTCATCCAGTCAGATACCTATGAGTGTGTTCTGGCTTGGATTTCAATTTGTAATATTTTCCATAGCTGAAGTACTTACATTGATAGGGCTGTTGGATTTCTTCTACGCAGAGAGCACATCAGGCATGAAATCACTGAGTATGGCGATTACATG</gDNA_template>
            <first_frame> A  F  V  L  S  H  K  L  K  K  Q  R  L  *  *  E  C  S  Q  L  Y  *  A  L  S  S  *  T  L  A  W  L  N  S  R  L  S  L  S  N  K  A  *  Q  *  T  E  K  S  E  T  L  K  S  Q  G  L  P  Y  L  *  F  L  K  Y  S  N  S  S  *  S  Q  S  M  I  V  S  L  F  R  *  Q  E  S  S  Q  G  S  L  L  V  F  D  N  C  N  V  *  V  L  D  *  Y  F  Q  *  Y  L  W  Q  W  L  Q  L  *  K  V  T  E  N  Q  L  P  L  S  I  T  W  L  T  H  P  V  R  Y  L  *  V  C  S  G  L  D  F  N  L  *  Y  F  P  *  L  K  Y  L  H  *  *  G  C  W  I  S  S  T  Q  R  A  H  Q  A  *  N  H  *  V  W  R  L  H  </first_frame>
            <second_frame>  P  L  Y  Y  L  T  S  *  R  N  K  D  C  S  K  N  A  P  N  Y  T  E  H  C  L  H  E  H  L  H  G  S  T  P  D  F  H  Y  P  T  K  H  D  N  E  Q  K  N  P  K  L  *  N  P  R  A  F  H  T  C  N  S  S  S  I  P  T  H  H  D  P  S  L  *  S  Y  L  C  S  D  S  K  K  V  H  R  D  P  F  W  Y  S  T  T  A  T  Y  R  C  W  T  S  I  F  S  S  I  Y  G  S  G  C  S  C  R  K  S  Q  K  I  S  C  H  *  A  *  H  G  *  L  I  Q  S  D  T  Y  E  C  V  L  A  W  I  S  I  C  N  I  F  H  S  *  S  T  Y  I  D  R  A  V  G  F  L  L  R  R  E  H  I  R  H  E  I  T  E  Y  G  D  Y  M </second_frame>
            <third_frame>   L  C  T  I  S  Q  V  E  E  T  K  I  V  V  R  M  L  P  I  I  L  S  T  V  F  M  N  T  C  M  A  Q  L  Q  T  F  T  I  Q  Q  S  M  T  M  N  R  K  I  R  N  F  E  I  P  G  P  S  I  P  V  I  P  Q  V  F  Q  L  I  M  I  P  V  Y  D  R  I  F  V  P  I  A  R  K  F  T  G  I  P  S  G  I  R  Q  L  Q  R  I  G  V  G  L  V  F  S  V  V  S  M  A  V  A  A  V  V  E  S  H  R  K  S  V  A  I  E  H  N  M  V  D  S  S  S  Q  I  P  M  S  V  F  W  L  G  F  Q  F  V  I  F  S  I  A  E  V  L  T  L  I  G  L  L  D  F  F  Y  A  E  S  T  S  G  M  K  S  L  S  M  A  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55004" stop="55540"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCTISQVEETKIVVRMLPIILSTVFMNTCMAQLQTFTIQQSMTMNRKIRNFEIPGPSIPVIPQVFQLIMIPVYDRIFVPIARKFTGIPSGIRQLQRIGVGLVFSVVSMAVAAVVESHRKSVAIEHNMVDSSSQIPMSVFWLGFQFVIFSIAEVLTLIGLLDFFYAESTSGMKSLSMAIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="63071" PGL_stop="60620"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63071" e_stop="62858"/>
            <exon e_start="62519" e_stop="62199"/>
            <exon e_start="60877" e_stop="60620"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="0.991"/>
          <exon-intron don_prob="0.982" acc_prob="0.914" e_score="0.997"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="63071" e_stop="62858" e_length="214"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62857" i_stop="62520" i_length="338"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="62519" e_stop="62199" e_length="321"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.914">
            <gDNA_intron_boundary i_start="62198" i_stop="60878" i_length="1321"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="60877" e_stop="60620" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63071" stop="62858"/>
              <exon start="62519" stop="62199"/>
              <exon start="60877" stop="60620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGAGATTGACAATGATCCATATCCTTTCTTCTTCTTCTACTACTACTACTACTTTTCTCATACTCTTTTTGGTCCTTTTCACTCTATCTCCATTTCCAGTTTCGATTGCCACTTCATCTACCATACCTTTCAACATCTCCCACTTCCTTTATCCAAGAATCAACTACGAGGAATATCCCCAATCTTCACCTAATCCTCCTTCATTTCTAGAG : GACGTGTTAAAGGGGATTGCTGAGCGAGAGAAATGGGATTTGCAGGACTTGAGAGTTTCCAAGTTGGATGTGAAGAAATCAAAGTTTGGGACTTTGAGGAGGTATGAGTTTCGGGTCAGAATTGGGAAGACGGAATTCGTATTCATGATGGCAGATGAAGTATCTCAGTGGAAAGGCCTTCACTTTCCTAACAAGAATGAATCCGACTTCGAGTCTTTGGTCAAAGAGATTGGTTCCAAAGCCACTCTTGATGTTCTAAAAATCCAAGGGCCATTCGAATTATATGCTACTGGAGATGATTACCTGTCCTTGACCTTACCC : CTGAACTCTTCTTATACTGGGTTGAAAAAGATCCTTGTTGATGAGGGCATCACTGTAGAAGTTAAAGGTGCTGATGAAATATCAATGTTCAACATCTCTGATTTGCTTAAATTAGTAAATGGAAGCATGTTGACCAAGTCAGGAAGCGGTCAATATAGATATATGTTGCAATCGTCCTGCATACCACTACTTCCCGTACATGTAAAGGGACCTGCTTCAGTTCTTGCCTATATCACCAGAAACCCTGACTTAAGAATT</gDNA_template>
            <first_frame> S  E  I  D  N  D  P  Y  P  F  F  F  F  Y  Y  Y  Y  Y  F  S  H  T  L  F  G  P  F  H  S  I  S  I  S  S  F  D  C  H  F  I  Y  H  T  F  Q  H  L  P  L  P  L  S  K  N  Q  L  R  G  I  S  P  I  F  T  *  S  S  F  I  S  R   : G  R  V  K  G  D  C  *  A  R  E  M  G  F  A  G  L  E  S  F  Q  V  G  C  E  E  I  K  V  W  D  F  E  E  V  *  V  S  G  Q  N  W  E  D  G  I  R  I  H  D  G  R  *  S  I  S  V  E  R  P  S  L  S  *  Q  E  *  I  R  L  R  V  F  G  Q  R  D  W  F  Q  S  H  S  *  C  S  K  N  P  R  A  I  R  I  I  C  Y  W  R  *  L  P  V  L  D  L  T   : P  E  L  F  L  Y  W  V  E  K  D  P  C  *  *  G  H  H  C  R  S  *  R  C  *  *  N  I  N  V  Q  H  L  *  F  A  *  I  S  K  W  K  H  V  D  Q  V  R  K  R  S  I  *  I  Y  V  A  I  V  L  H  T  T  T  S  R  T  C  K  G  T  C  F  S  S  C  L  Y  H  Q  K  P  *  L  K  N  </first_frame>
            <second_frame>  Q  R  L  T  M  I  H  I  L  S  S  S  S  T  T  T  T  T  F  L  I  L  F  L  V  L  F  T  L  S  P  F  P  V  S  I  A  T  S  S  T  I  P  F  N  I  S  H  F  L  Y  P  R  I  N  Y  E  E  Y  P  Q  S  S  P  N  P  P  S  F  L  E  :  D  V  L  K  G  I  A  E  R  E  K  W  D  L  Q  D  L  R  V  S  K  L  D  V  K  K  S  K  F  G  T  L  R  R  Y  E  F  R  V  R  I  G  K  T  E  F  V  F  M  M  A  D  E  V  S  Q  W  K  G  L  H  F  P  N  K  N  E  S  D  F  E  S  L  V  K  E  I  G  S  K  A  T  L  D  V  L  K  I  Q  G  P  F  E  L  Y  A  T  G  D  D  Y  L  S  L  T  L  P  :  L  N  S  S  Y  T  G  L  K  K  I  L  V  D  E  G  I  T  V  E  V  K  G  A  D  E  I  S  M  F  N  I  S  D  L  L  K  L  V  N  G  S  M  L  T  K  S  G  S  G  Q  Y  R  Y  M  L  Q  S  S  C  I  P  L  L  P  V  H  V  K  G  P  A  S  V  L  A  Y  I  T  R  N  P  D  L  R  I </second_frame>
            <third_frame>   R  D  *  Q  *  S  I  S  F  L  L  L  L  L  L  L  L  L  F  S  Y  S  F  W  S  F  S  L  Y  L  H  F  Q  F  R  L  P  L  H  L  P  Y  L  S  T  S  P  T  S  F  I  Q  E  S  T  T  R  N  I  P  N  L  H  L  I  L  L  H  F  *  R :   T  C  *  R  G  L  L  S  E  R  N  G  I  C  R  T  *  E  F  P  S  W  M  *  R  N  Q  S  L  G  L  *  G  G  M  S  F  G  S  E  L  G  R  R  N  S  Y  S  *  W  Q  M  K  Y  L  S  G  K  A  F  T  F  L  T  R  M  N  P  T  S  S  L  W  S  K  R  L  V  P  K  P  L  L  M  F  *  K  S  K  G  H  S  N  Y  M  L  L  E  M  I  T  C  P  *  P  Y  P :   *  T  L  L  I  L  G  *  K  R  S  L  L  M  R  A  S  L  *  K  L  K  V  L  M  K  Y  Q  C  S  T  S  L  I  C  L  N  *  *  M  E  A  C  *  P  S  Q  E  A  V  N  I  D  I  C  C  N  R  P  A  Y  H  Y  F  P  Y  M  *  R  D  L  L  Q  F  L  P  I  S  P  E  T  L  T  *  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63070" stop="62858"/>
                    <exon start="62519" stop="62199"/>
                    <exon start="60877" stop="60620"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRLTMIHILSSSSTTTTTFLILFLVLFTLSPFPVSIATSSTIPFNISHFLYPRINYEEYPQSSPNPPSFLEDVLKGIAEREKWDLQDLRVSKLDVKKSKFGTLRRYEFRVRIGKTEFVFMMADEVSQWKGLHFPNKNESDFESLVKEIGSKATLDVLKIQGPFELYATGDDYLSLTLPLNSSYTGLKKILVDEGITVEVKGADEISMFNISDLLKLVNGSMLTKSGSGQYRYMLQSSCIPLLPVHVKGPASVLAYITRNPDLRI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="67149" PGL_stop="63874"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67149" e_stop="66132"/>
            <exon e_start="65386" e_stop="65318"/>
            <exon e_start="65229" e_stop="65158"/>
            <exon e_start="65074" e_stop="64988"/>
            <exon e_start="64900" e_stop="64833"/>
            <exon e_start="64467" e_stop="63874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="0.999"/>
          <exon-intron don_prob="0.994" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.993" e_score="0.989"/>
          <exon-intron don_prob="0.988" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="67149" e_stop="66132" e_length="1018"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="66131" i_stop="65387" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65386" e_stop="65318" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.849">
            <gDNA_intron_boundary i_start="65317" i_stop="65230" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65229" e_stop="65158" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.933">
            <gDNA_intron_boundary i_start="65157" i_stop="65075" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="65074" e_stop="64988" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.993">
            <gDNA_intron_boundary i_start="64987" i_stop="64901" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64900" e_stop="64833" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.972">
            <gDNA_intron_boundary i_start="64832" i_stop="64468" i_length="365"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="64467" e_stop="63874" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67149" stop="66132"/>
              <exon start="65386" stop="65318"/>
              <exon start="65229" stop="65158"/>
              <exon start="65074" stop="64988"/>
              <exon start="64900" stop="64833"/>
              <exon start="64467" stop="63874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67113" stop="66659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATACCCTCCGCTTTTTCTACGGCGAGTTCTCGCCGGCCGTCGTCAAGAGCAAAATCATCGTTTCCCTTTTCCGTTCACTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCATTGAAAGCGTCTTCGTTTCTTCCATTTCTTCAGGGCTCGAAATGGCTTCCTTGTAATGAGCCCAGTATTGGGTCCTCGGGGAGTTCCGAGGTGGATAAAGGTGGAACTGAAACTAGGTGTAGTGAAAGTTCTGTTCGGTCGGAGCCTTTGTCCAATGAAATGAAGGTTTCCAAGAGCCGTTGGGTGTCAAAGTTGTTGAACATCTGTTCTGATGATGCAAAGGCTGCTTTTACAGCTTTGAGTGTTAGCATAATGTTTAAGTCATCTTTGGCTGAGCCAAGATCAATTCCATCTGCTTCCATGTCCCCTACTCTGGATAAGGGTGACCGTATAATGGCTGAAAAG : GTTTCATATTTTTTTCGGCAACCTGACATTTCAGACATAGTGATATTTAAAGCACCACCAATCCTTCAG : CATATTTTTGGTTGTAGTGCTGGAGACGTCTTCATTAAAAGAGTTGTTGCATTAGCTGGGGATTATATTGAA : GTGCGTGAGGGTAAACTGTTTTTGAATGGTGTTGCTCAAGATGAAGATTTCATTTTAGAGCCTATTGCGTATGAAATGGAACCAGTG : CTTGTTCCTGAAGGCTGTGTGTTCGTGATGGGGGACAATCGCAATAATAGCTATGATTCTCACAACTG : GGGTCCACTTCCCGTTGCAAACATTGTCGGTAGGTCAGTATTCAGATATTGGCCCCCATCCAGGGTGTCGGACACCCTGCATGGATCAGTAATGGAGAAGAGAGTAGTTGCAGTTTCTTGACCCTGTCTAAGATGGAGGTGTTCTACTGACTTCTTTCATCTCTTTATTCTTTTACTGATCATTCTCTGCCTTCTGGCTCATTGGATCAGCTGTATAATCTTTCCCATCCCAGCTGCCGTTGTTCGATCCACAATTTGAACAACTTTGAGGATGGATTATCTTAATCCGCCTGTGTGATTGTTTTTCTCAAGTGGCCCTATATTGGGTTTTTGCAATTTTATGTAGTGCAAAGTCTCAGAGATAAAGCTGATCATTGGAATTAGCAAACTCAGTTGTCATGAAGAACTGGAACATTTTCCCTTTCTCCTTAACCGTGGAGTGGAGACCAGACTAGGGAGACACGATGGTGTATCCAACAAAGTTTCAGCTGTAAATCGCGACCAATATTCTGAGGCTGAACATGTTTAATATTTGCTTGTATTCCTGCTGAATGTAGTGAATTATGAAGTATGGTCTCTATATAACAATTTTCT</gDNA_template>
            <first_frame> N  T  L  R  F  F  Y  G  E  F  S  P  A  V  V  K  S  K  I  I  V  S  L  F  R  S  L  N  T  L  L  K  N  P  N  F  D  P  I  L  S  A  H  R  S  I  L  Y  L  I  P  L  T  *  L  F  N  S  P  I  S  F  P  I  L  *  F  H  Q  S  R  W  P  F  F  A  S  C  K  V  F  T  T  L  P  V  S  F  R  T  H  N  S  L  H  L  A  R  F  I  T  I  C  S  Y  G  D  P  V  H  S  H  L  F  R  L  L  S  P  K  P  S  F  I  G  F  F  E  S  R  W  L  Q  V  F  S  R  M  Y  C  P  I  S  N  F  P  S  T  S  S  K  T  R  I  K  L  L  R  F  P  P  D  K  T  E  T  T  A  G  E  *  Y  L  L  F  P  V  V  F  V  Q  F  S  V  F  F  V  C  F  *  A  F  W  R  K  F  E  F  T  F  G  C  W  I  D  F  A  D  E  V  L  F  W  V  L  Y  H  E  C  V  G  D  F  A  I  E  S  V  F  V  S  S  I  S  S  G  L  E  M  A  S  L  *  *  A  Q  Y  W  V  L  G  E  F  R  G  G  *  R  W  N  *  N  *  V  *  *  K  F  C  S  V  G  A  F  V  Q  *  N  E  G  F  Q  E  P  L  G  V  K  V  V  E  H  L  F  *  *  C  K  G  C  F  Y  S  F  E  C  *  H  N  V  *  V  I  F  G  *  A  K  I  N  S  I  C  F  H  V  P  Y  S  G  *  G  *  P  Y  N  G  *  K   : G  F  I  F  F  S  A  T  *  H  F  R  H  S  D  I  *  S  T  T  N  P  S   : A  Y  F  W  L  *  C  W  R  R  L  H  *  K  S  C  C  I  S  W  G  L  Y  *   : S  A  *  G  *  T  V  F  E  W  C  C  S  R  *  R  F  H  F  R  A  Y  C  V  *  N  G  T  S   : A  C  S  *  R  L  C  V  R  D  G  G  Q  S  Q  *  *  L  *  F  S  Q  L  :  G  S  T  S  R  C  K  H  C  R  *  V  S  I  Q  I  L  A  P  I  Q  G  V  G  H  P  A  W  I  S  N  G  E  E  S  S  C  S  F  L  T  L  S  K  M  E  V  F  Y  *  L  L  S  S  L  Y  S  F  T  D  H  S  L  P  S  G  S  L  D  Q  L  Y  N  L  S  H  P  S  C  R  C  S  I  H  N  L  N  N  F  E  D  G  L  S  *  S  A  C  V  I  V  F  L  K  W  P  Y  I  G  F  L  Q  F  Y  V  V  Q  S  L  R  D  K  A  D  H  W  N  *  Q  T  Q  L  S  *  R  T  G  T  F  S  L  S  P  *  P  W  S  G  D  Q  T  R  E  T  R  W  C  I  Q  Q  S  F  S  C  K  S  R  P  I  F  *  G  *  T  C  L  I  F  A  C  I  P  A  E  C  S  E  L  *  S  M  V  S  I  *  Q  F  S </first_frame>
            <second_frame>  I  P  S  A  F  S  T  A  S  S  R  R  P  S  S  R  A  K  S  S  F  P  F  S  V  H  L  I  P  F  *  K  T  L  I  L  I  R  F  F  Q  L  T  V  Q  F  F  T  S  F  R  *  P  N  F  S  I  H  R  F  L  F  Q  F  S  D  F  I  N  P  D  G  L  S  S  L  L  V  R  F  L  Q  L  S  P  L  V  S  E  P  T  I  L  Y  I  L  L  G  L  L  Q  F  V  V  M  A  I  R  F  T  V  T  Y  S  G  Y  L  A  Q  N  L  A  S  S  A  S  S  K  V  V  G  C  R  F  F  H  E  C  T  V  R  S  R  I  F  H  P  P  A  Q  K  P  E  S  N  C  S  D  F  R  R  T  K  P  K  P  R  P  V  S  N  T  Y  S  S  R  S  F  S  S  S  S  A  C  S  S  F  A  S  E  L  F  G  G  S  S  N  S  P  L  V  V  G  L  I  S  L  M  R  S  S  S  G  S  C  T  M  N  A  L  G  I  S  P  L  K  A  S  S  F  L  P  F  L  Q  G  S  K  W  L  P  C  N  E  P  S  I  G  S  S  G  S  S  E  V  D  K  G  G  T  E  T  R  C  S  E  S  S  V  R  S  E  P  L  S  N  E  M  K  V  S  K  S  R  W  V  S  K  L  L  N  I  C  S  D  D  A  K  A  A  F  T  A  L  S  V  S  I  M  F  K  S  S  L  A  E  P  R  S  I  P  S  A  S  M  S  P  T  L  D  K  G  D  R  I  M  A  E  K  :  V  S  Y  F  F  R  Q  P  D  I  S  D  I  V  I  F  K  A  P  P  I  L  Q  :  H  I  F  G  C  S  A  G  D  V  F  I  K  R  V  V  A  L  A  G  D  Y  I  E  :  V  R  E  G  K  L  F  L  N  G  V  A  Q  D  E  D  F  I  L  E  P  I  A  Y  E  M  E  P  V  :  L  V  P  E  G  C  V  F  V  M  G  D  N  R  N  N  S  Y  D  S  H  N  W :   G  P  L  P  V  A  N  I  V  G  R  S  V  F  R  Y  W  P  P  S  R  V  S  D  T  L  H  G  S  V  M  E  K  R  V  V  A  V  S  *  P  C  L  R  W  R  C  S  T  D  F  F  H  L  F  I  L  L  L  I  I  L  C  L  L  A  H  W  I  S  C  I  I  F  P  I  P  A  A  V  V  R  S  T  I  *  T  T  L  R  M  D  Y  L  N  P  P  V  *  L  F  F  S  S  G  P  I  L  G  F  C  N  F  M  *  C  K  V  S  E  I  K  L  I  I  G  I  S  K  L  S  C  H  E  E  L  E  H  F  P  F  L  L  N  R  G  V  E  T  R  L  G  R  H  D  G  V  S  N  K  V  S  A  V  N  R  D  Q  Y  S  E  A  E  H  V  *  Y  L  L  V  F  L  L  N  V  V  N  Y  E  V  W  S  L  Y  N  N  F   </second_frame>
            <third_frame>   Y  P  P  L  F  L  R  R  V  L  A  G  R  R  Q  E  Q  N  H  R  F  P  F  P  F  T  *  Y  P  F  E  K  P  *  F  *  S  D  S  F  S  S  P  F  N  S  L  P  H  S  V  D  L  T  F  Q  F  T  D  F  F  S  N  S  L  I  S  S  I  P  M  A  F  L  R  F  L  *  G  F  Y  N  S  P  R  *  F  P  N  P  Q  F  S  T  S  C  S  V  Y  Y  N  L  *  L  W  R  S  G  S  Q  S  P  I  P  A  T  *  P  K  T  *  L  H  R  L  L  R  K  S  L  V  A  G  F  F  T  N  V  L  S  D  L  E  F  S  I  H  Q  L  K  N  P  N  Q  I  A  P  I  S  A  G  Q  N  R  N  H  G  R  *  V  I  L  T  L  P  G  R  F  R  P  V  Q  R  V  L  R  L  L  L  S  F  L  A  E  V  R  I  H  L  W  L  L  D  *  F  R  *  *  G  P  L  L  G  L  V  P  *  M  R  W  G  F  R  H  *  K  R  L  R  F  F  H  F  F  R  A  R  N  G  F  L  V  M  S  P  V  L  G  P  R  G  V  P  R  W  I  K  V  E  L  K  L  G  V  V  K  V  L  F  G  R  S  L  C  P  M  K  *  R  F  P  R  A  V  G  C  Q  S  C  *  T  S  V  L  M  M  Q  R  L  L  L  Q  L  *  V  L  A  *  C  L  S  H  L  W  L  S  Q  D  Q  F  H  L  L  P  C  P  L  L  W  I  R  V  T  V  *  W  L  K  R :   F  H  I  F  F  G  N  L  T  F  Q  T  *  *  Y  L  K  H  H  Q  S  F  S :   I  F  L  V  V  V  L  E  T  S  S  L  K  E  L  L  H  *  L  G  I  I  L  K :   C  V  R  V  N  C  F  *  M  V  L  L  K  M  K  I  S  F  *  S  L  L  R  M  K  W  N  Q  C :   L  F  L  K  A  V  C  S  *  W  G  T  I  A  I  I  A  M  I  L  T  T   : G  V  H  F  P  L  Q  T  L  S  V  G  Q  Y  S  D  I  G  P  H  P  G  C  R  T  P  C  M  D  Q  *  W  R  R  E  *  L  Q  F  L  D  P  V  *  D  G  G  V  L  L  T  S  F  I  S  L  F  F  Y  *  S  F  S  A  F  W  L  I  G  S  A  V  *  S  F  P  S  Q  L  P  L  F  D  P  Q  F  E  Q  L  *  G  W  I  I  L  I  R  L  C  D  C  F  S  Q  V  A  L  Y  W  V  F  A  I  L  C  S  A  K  S  Q  R  *  S  *  S  L  E  L  A  N  S  V  V  M  K  N  W  N  I  F  P  F  S  L  T  V  E  W  R  P  D  *  G  D  T  M  V  Y  P  T  K  F  Q  L  *  I  A  T  N  I  L  R  L  N  M  F  N  I  C  L  Y  S  C  *  M  *  *  I  M  K  Y  G  L  Y  I  T  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66992" stop="66132"/>
                    <exon start="65386" stop="65318"/>
                    <exon start="65229" stop="65158"/>
                    <exon start="65074" stop="64988"/>
                    <exon start="64900" stop="64833"/>
                    <exon start="64467" stop="64347"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNFSIHRFLFQFSDFINPDGLSSLLVRFLQLSPLVSEPTILYILLGLLQFVVMAIRFTVTYSGYLAQNLASSASSKVVGCRFFHECTVRSRIFHPPAQKPESNCSDFRRTKPKPRPVSNTYSSRSFSSSSACSSFASELFGGSSNSPLVVGLISLMRSSSGSCTMNALGISPLKASSFLPFLQGSKWLPCNEPSIGSSGSSEVDKGGTETRCSESSVRSEPLSNEMKVSKSRWVSKLLNICSDDAKAAFTALSVSIMFKSSLAEPRSIPSASMSPTLDKGDRIMAEKVSYFFRQPDISDIVIFKAPPILQHIFGCSAGDVFIKRVVALAGDYIEVREGKLFLNGVAQDEDFILEPIAYEMEPVLVPEGCVFVMGDNRNNSYDSHNWGPLPVANIVGRSVFRYWPPSRVSDTLHGSVMEKRVVAVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="89149" PGL_stop="88625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89149" e_stop="88625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="89149" e_stop="88625" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89149" stop="88625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345853" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAATAGGGACAAGAACGTGTGGGAGAGTCCTGAAGAGTGGAAGCCTGAACGATTTCTTAACGGAAAGTATGATCCAATGGAATTGCAGAAGACAATGGCGTTTGGGGCTGGAAAAAGGGTATGTGCTGGTGCTCAGCAAGCAATGACAATTAGTTGCACAGCTATTGCTAGATTGATACAAGAGTTTGAATGGAGCTTAAAAGAAGGAGAAGAGAAAAATGTTGCAACAATGGGTCTTACTACTCATAAACTTCACCCGATGCTAGCTCATATCAAGCCAAGAAATTGAAGGGGAATATTTACCGTAACTTGGTAAATTTGTTGTCATGTGATCAGGAGGTTACTGGTTCAGACCATGGAAATATTCTCATGCGGAAATGTTAGATAAAACTATGAATAATAAACTCTTTGTGGTTCGGCCGTTTTAGTGCATCTGGCTGCCCAAGATTTGAACTTTCTACTCTGTATTAGCAGAGCTTGCTATTTTGTTACTTTTCAAGATATCACTATGATGATAATTTTG</gDNA_template>
            <first_frame> C  N  R  D  K  N  V  W  E  S  P  E  E  W  K  P  E  R  F  L  N  G  K  Y  D  P  M  E  L  Q  K  T  M  A  F  G  A  G  K  R  V  C  A  G  A  Q  Q  A  M  T  I  S  C  T  A  I  A  R  L  I  Q  E  F  E  W  S  L  K  E  G  E  E  K  N  V  A  T  M  G  L  T  T  H  K  L  H  P  M  L  A  H  I  K  P  R  N  *  R  G  I  F  T  V  T  W  *  I  C  C  H  V  I  R  R  L  L  V  Q  T  M  E  I  F  S  C  G  N  V  R  *  N  Y  E  *  *  T  L  C  G  S  A  V  L  V  H  L  A  A  Q  D  L  N  F  L  L  C  I  S  R  A  C  Y  F  V  T  F  Q  D  I  T  M  M  I  I  L </first_frame>
            <second_frame>  A  I  G  T  R  T  C  G  R  V  L  K  S  G  S  L  N  D  F  L  T  E  S  M  I  Q  W  N  C  R  R  Q  W  R  L  G  L  E  K  G  Y  V  L  V  L  S  K  Q  *  Q  L  V  A  Q  L  L  L  D  *  Y  K  S  L  N  G  A  *  K  K  E  K  R  K  M  L  Q  Q  W  V  L  L  L  I  N  F  T  R  C  *  L  I  S  S  Q  E  I  E  G  E  Y  L  P  *  L  G  K  F  V  V  M  *  S  G  G  Y  W  F  R  P  W  K  Y  S  H  A  E  M  L  D  K  T  M  N  N  K  L  F  V  V  R  P  F  *  C  I  W  L  P  K  I  *  T  F  Y  S  V  L  A  E  L  A  I  L  L  L  F  K  I  S  L  *  *  *  F   </second_frame>
            <third_frame>   Q  *  G  Q  E  R  V  G  E  S  *  R  V  E  A  *  T  I  S  *  R  K  V  *  S  N  G  I  A  E  D  N  G  V  W  G  W  K  K  G  M  C  W  C  S  A  S  N  D  N  *  L  H  S  Y  C  *  I  D  T  R  V  *  M  E  L  K  R  R  R  R  E  K  C  C  N  N  G  S  Y  Y  S  *  T  S  P  D  A  S  S  Y  Q  A  K  K  L  K  G  N  I  Y  R  N  L  V  N  L  L  S  C  D  Q  E  V  T  G  S  D  H  G  N  I  L  M  R  K  C  *  I  K  L  *  I  I  N  S  L  W  F  G  R  F  S  A  S  G  C  P  R  F  E  L  S  T  L  Y  *  Q  S  L  L  F  C  Y  F  S  R  Y  H  Y  D  D  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89149" stop="88859"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNRDKNVWESPEEWKPERFLNGKYDPMELQKTMAFGAGKRVCAGAQQAMTISCTAIARLIQEFEWSLKEGEEKNVATMGLTTHKLHPMLAHIKPRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="92075" PGL_stop="90249"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92075" e_stop="91985"/>
            <exon e_start="90743" e_stop="90582"/>
            <exon e_start="90493" e_stop="90353"/>
            <exon e_start="90256" e_stop="90249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.782" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.986" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92075" e_stop="91985" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="91984" i_stop="90744" i_length="1241"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90743" e_stop="90582" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.782">
            <gDNA_intron_boundary i_start="90581" i_stop="90494" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="90493" e_stop="90353" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.611" acc_prob="0.986">
            <gDNA_intron_boundary i_start="90352" i_stop="90257" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90256" e_stop="90249" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92075" stop="91985"/>
              <exon start="90743" stop="90582"/>
              <exon start="90493" stop="90353"/>
              <exon start="90256" stop="90249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332034" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTGGGCTGAAACTTATGGACCTATTTATTCCATCAAAACCGGCGCAAATACAATTGTTGTACTCAGTTCTAGTGAACTTGCAAAGGAG : GCTATGGTGACTAGATATTCATCCATCTCAACTAGAAAGCTAACAAACGCATTGAGAATCCTTACTTGTGATAAGAGTATAGTCGCGATAAGTGATTACGATGAGTTTCACAAGACAGCGAAGCGCCACATACTGACCAGTGTTCTAGGACCAACTGCTCAG : AAACGCTTCCGTATCCACAGGGACACCTTGGTAGAAAATGTGTCAAAGCAACTACATGATTTGGTTAGGACTGATCCTAACGAAGCAGTTAATCTAAGGAAGTCATTTCAGTCGGAACTTTTTGGTTTAGCATTGAAACAA : GCTTTGGG</gDNA_template>
            <first_frame> K  L  G  *  N  L  W  T  Y  L  F  H  Q  N  R  R  K  Y  N  C  C  T  Q  F  *  *  T  C  K  G   : G  Y  G  D  *  I  F  I  H  L  N  *  K  A  N  K  R  I  E  N  P  Y  L  *  *  E  Y  S  R  D  K  *  L  R  *  V  S  Q  D  S  E  A  P  H  T  D  Q  C  S  R  T  N  C  S   : E  T  L  P  Y  P  Q  G  H  L  G  R  K  C  V  K  A  T  T  *  F  G  *  D  *  S  *  R  S  S  *  S  K  E  V  I  S  V  G  T  F  W  F  S  I  E  T   : S  F  G </first_frame>
            <second_frame>  N  W  A  E  T  Y  G  P  I  Y  S  I  K  T  G  A  N  T  I  V  V  L  S  S  S  E  L  A  K  E  :  A  M  V  T  R  Y  S  S  I  S  T  R  K  L  T  N  A  L  R  I  L  T  C  D  K  S  I  V  A  I  S  D  Y  D  E  F  H  K  T  A  K  R  H  I  L  T  S  V  L  G  P  T  A  Q  :  K  R  F  R  I  H  R  D  T  L  V  E  N  V  S  K  Q  L  H  D  L  V  R  T  D  P  N  E  A  V  N  L  R  K  S  F  Q  S  E  L  F  G  L  A  L  K  Q  :  A  L   </second_frame>
            <third_frame>   I  G  L  K  L  M  D  L  F  I  P  S  K  P  A  Q  I  Q  L  L  Y  S  V  L  V  N  L  Q  R  R :   L  W  *  L  D  I  H  P  S  Q  L  E  S  *  Q  T  H  *  E  S  L  L  V  I  R  V  *  S  R  *  V  I  T  M  S  F  T  R  Q  R  S  A  T  Y  *  P  V  F  *  D  Q  L  L  R :   N  A  S  V  S  T  G  T  P  W  *  K  M  C  Q  S  N  Y  M  I  W  L  G  L  I  L  T  K  Q  L  I  *  G  S  H  F  S  R  N  F  L  V  *  H  *  N  K :   L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92074" stop="91985"/>
                    <exon start="90743" stop="90582"/>
                    <exon start="90493" stop="90353"/>
                    <exon start="90256" stop="90251"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWAETYGPIYSIKTGANTIVVLSSSELAKEAMVTRYSSISTRKLTNALRILTCDKSIVAISDYDEFHKTAKRHILTSVLGPTAQKRFRIHRDTLVENVSKQLHDLVRTDPNEAVNLRKSFQSELFGLALKQAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="95734" PGL_stop="102160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95734" e_stop="95922"/>
            <exon e_start="96682" e_stop="97273"/>
            <exon e_start="97732" e_stop="97865"/>
            <exon e_start="98890" e_stop="99355"/>
            <exon e_start="99447" e_stop="99616"/>
            <exon e_start="101101" e_stop="101467"/>
            <exon e_start="101811" e_stop="102160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.771" e_score="0.998"/>
          <exon-intron don_prob="0.991" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.846" e_score="0.997"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="95734" e_stop="95922" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="95923" i_stop="96681" i_length="759"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="96682" e_stop="97273" e_length="592"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.771">
            <gDNA_intron_boundary i_start="97274" i_stop="97731" i_length="458"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97732" e_stop="97865" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.976">
            <gDNA_intron_boundary i_start="97866" i_stop="98889" i_length="1024"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98890" e_stop="99355" e_length="466"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99356" i_stop="99446" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99447" e_stop="99616" e_length="170"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.928">
            <gDNA_intron_boundary i_start="99617" i_stop="101100" i_length="1484"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="101101" e_stop="101467" e_length="367"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.846">
            <gDNA_intron_boundary i_start="101468" i_stop="101810" i_length="343"/>
          </intron>
          <exon e_serial="7" e_score="0.969">
            <gDNA_exon_boundary e_start="101811" e_stop="102160" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95734" stop="95922"/>
              <exon start="96682" stop="97158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97135" stop="97273"/>
              <exon start="97732" stop="97865"/>
              <exon start="98890" stop="99355"/>
              <exon start="99447" stop="99616"/>
              <exon start="101101" stop="101467"/>
              <exon start="101811" stop="102160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATTTGATTACTTGCTTAATTTCACATCCCCAGAATCTTAAAAAATGGGGTTGAAGGAATTTTGTGGGGTTCTTTAGGGTTTTAGCTTCAAAAATTTAGGTGAAAAAGAGAGGAAACAGAGATGTTAGATGCAAGAAGGCCTCATTTTCTTGTGGGTTTTAACCCTTTCATGAATTCTGAAAAATTG : AAAATTCCATCAAAATTCATTAAACATATGGAAGGAGGGGATTCTGGAACAACAGTTCTGGTGGGTCCCAGTGGAAATGCTTGGCCTGTGGACTTAATACAGCAAGATGATGGTTTATTCTTCAATAATGGATGGGTTTCATTTGTTAAAGATCACTGCCTTGAAACAGGGGATTCTTTGGTTTTCAGATATGACGGTGATTTGCATTTCACTGTGCAAGTATTTGACGAGAGTTCATGTGAGAAGGAGGCTTCTTATAATGCTGACTGCAGTCAAGGAGCAACTGACTTGTACAATCTTGCTCTGAAAAAAAGAGACCGAGGAAACTCTGTTTTATTAGATTGTATGGTTGAAGGTGTACCGAAGAAAATGAAAAGCACCGAGATCCCTTCCGAATGCACAAGTAGCCAGGATACACATGGTCTTGCATCTAGCAAGGATGGGTACACTCCAGAAGATGCAGTTTGCTCATATGCAGGAAGAAATTATGCTGCTAGTTTTCTGGATGAAATGGAGAATGCTGGAGATGCATTAAACAGTAAAGTTACCATTGCTGTGCCAGCTCAAGCAAAGATAATCTTTAGCAATCCAG : GCAATGCTTCCTCCGAGAAAGATATGTGGTTGCCTGCACAGGAAGCAGAAAAGGTTGCTGGTTTGTTTACCTCAAGTTTGCCCAGCTTTACTAAAGTTATGAAGAGGTTCAACATCAGTGGCTCATACACCCTG : CATATCCCTTACCAATTTGCCACGGAACACCTTCCCAACTGCAAGGTGAAGATTTTACTTCATAATTTAGAAGGGAAAACTTGGACTGTGAATTCAATTCCGACTACAAGAGTACAAACATCACATACCTTTTGCGGAGGGTGGTTATCTTTTGTTCGCGACAATAACATTGATTTGGGAGATACCTGCATTTTTGAGCTTGTCCGCAAGTGTGAATTGCGTGTGCGTGTTCTTAAGGCGGAAAAGGAAGGAAGTGATTACAGTAGTAAGGTAGTTGATGAAGGACTAGTTATTGATTATGCAAAAAATTCTGGATGTAAGTCCAGGAAAGTGGGATCGAGTTCTGATCAAGCGAAGGTTATGACATATGATAAAAAAGGATCTACTCCTGAAAAAGAGAAACATGGCGATATGTTGAAGAATCATCAGCTCCATTCTCAGTCAAAGATTAGCAGTGGAGATTCAG : CTATCAGGAAACCTACTAGTTCTCAAGATAAACAGGGTTCTTTCACCAAGAGCTGTATGTCTATGAAATCAGTACCTGAAGAGAAATTAGCCGCTGAGTCTTTCATTTCCAATTTCCCTCATTTCGTGCGAATCATGAAAAAATTCAACATTAGTGGCTCTTACACCTTG : AAAGTTCCATGTCGGTTCTCAATGGAACACCTCCCAAACTGCAGAACAGAGATTGTGCTTCAGAACTTGAAAGGAGAATGTTGGACTGTAAATTCAATTCCGACTGTAAAGGTACAAACGCTGCACACATTCTGTGGAGGATGGTCGGCATTTGTCCGGGAGAATGACATCCAGATGGGAGATATCTGCATATTTGAGCTCATTGGGAAATATGAAATGCGTGTACATGTATGTGCAATTGGGAAGAAGGGGTTAGATTACCAAAATGGGACAGCTCCTAAAGAGTCGGATATCCTTGCTTCCTTGACAAGCTAGAGACCTTTGGTGTGAAACACTGTAGGAAAGATTACTTCTTGCGTAATACAAG : GCTTGGTGTTTCACTGGAAGATAACGAAACTTGAATACATGGGATCAGAAAAGGTACACATATCAATGTTATGGAGAAGCACTTGAGTAGATTATCAAACATTTGACTAGGTTGGCCATATGCCTTCAGTAGCTTAGATGTTTTGTTGTTGGCATTGTCTGAGCACTCTTTTCAGACTCTGTGTTGTATAAGTACTGCCAGAAAAGCTTCTCATTTTCTTGATGTAAATAAGTGTGTTTTTAGTTCAATTGTCCTGAAACAATCTGCTGTTTGGTCTGTATATGTATAAACAGTAATCAGACAGAACATCTTCTAGAATGAGAAATTAAAGTTTCACTCTACTGGATCAC</gDNA_template>
            <first_frame> F  I  *  L  L  A  *  F  H  I  P  R  I  L  K  N  G  V  E  G  I  L  W  G  S  L  G  F  *  L  Q  K  F  R  *  K  R  E  E  T  E  M  L  D  A  R  R  P  H  F  L  V  G  F  N  P  F  M  N  S  E  K  L  :  K  I  P  S  K  F  I  K  H  M  E  G  G  D  S  G  T  T  V  L  V  G  P  S  G  N  A  W  P  V  D  L  I  Q  Q  D  D  G  L  F  F  N  N  G  W  V  S  F  V  K  D  H  C  L  E  T  G  D  S  L  V  F  R  Y  D  G  D  L  H  F  T  V  Q  V  F  D  E  S  S  C  E  K  E  A  S  Y  N  A  D  C  S  Q  G  A  T  D  L  Y  N  L  A  L  K  K  R  D  R  G  N  S  V  L  L  D  C  M  V  E  G  V  P  K  K  M  K  S  T  E  I  P  S  E  C  T  S  S  Q  D  T  H  G  L  A  S  S  K  D  G  Y  T  P  E  D  A  V  C  S  Y  A  G  R  N  Y  A  A  S  F  L  D  E  M  E  N  A  G  D  A  L  N  S  K  V  T  I  A  V  P  A  Q  A  K  I  I  F  S  N  P   : G  N  A  S  S  E  K  D  M  W  L  P  A  Q  E  A  E  K  V  A  G  L  F  T  S  S  L  P  S  F  T  K  V  M  K  R  F  N  I  S  G  S  Y  T  L  :  H  I  P  Y  Q  F  A  T  E  H  L  P  N  C  K  V  K  I  L  L  H  N  L  E  G  K  T  W  T  V  N  S  I  P  T  T  R  V  Q  T  S  H  T  F  C  G  G  W  L  S  F  V  R  D  N  N  I  D  L  G  D  T  C  I  F  E  L  V  R  K  C  E  L  R  V  R  V  L  K  A  E  K  E  G  S  D  Y  S  S  K  V  V  D  E  G  L  V  I  D  Y  A  K  N  S  G  C  K  S  R  K  V  G  S  S  S  D  Q  A  K  V  M  T  Y  D  K  K  G  S  T  P  E  K  E  K  H  G  D  M  L  K  N  H  Q  L  H  S  Q  S  K  I  S  S  G  D  S   : A  I  R  K  P  T  S  S  Q  D  K  Q  G  S  F  T  K  S  C  M  S  M  K  S  V  P  E  E  K  L  A  A  E  S  F  I  S  N  F  P  H  F  V  R  I  M  K  K  F  N  I  S  G  S  Y  T  L  :  K  V  P  C  R  F  S  M  E  H  L  P  N  C  R  T  E  I  V  L  Q  N  L  K  G  E  C  W  T  V  N  S  I  P  T  V  K  V  Q  T  L  H  T  F  C  G  G  W  S  A  F  V  R  E  N  D  I  Q  M  G  D  I  C  I  F  E  L  I  G  K  Y  E  M  R  V  H  V  C  A  I  G  K  K  G  L  D  Y  Q  N  G  T  A  P  K  E  S  D  I  L  A  S  L  T  S  *  R  P  L  V  *  N  T  V  G  K  I  T  S  C  V  I  Q   : G  L  V  F  H  W  K  I  T  K  L  E  Y  M  G  S  E  K  V  H  I  S  M  L  W  R  S  T  *  V  D  Y  Q  T  F  D  *  V  G  H  M  P  S  V  A  *  M  F  C  C  W  H  C  L  S  T  L  F  R  L  C  V  V  *  V  L  P  E  K  L  L  I  F  L  M  *  I  S  V  F  L  V  Q  L  S  *  N  N  L  L  F  G  L  Y  M  Y  K  Q  *  S  D  R  T  S  S  R  M  R  N  *  S  F  T  L  L  D  H </first_frame>
            <second_frame>  L  F  D  Y  L  L  N  F  T  S  P  E  S  *  K  M  G  L  K  E  F  C  G  V  L  *  G  F  S  F  K  N  L  G  E  K  E  R  K  Q  R  C  *  M  Q  E  G  L  I  F  L  W  V  L  T  L  S  *  I  L  K  N  * :   K  F  H  Q  N  S  L  N  I  W  K  E  G  I  L  E  Q  Q  F  W  W  V  P  V  E  M  L  G  L  W  T  *  Y  S  K  M  M  V  Y  S  S  I  M  D  G  F  H  L  L  K  I  T  A  L  K  Q  G  I  L  W  F  S  D  M  T  V  I  C  I  S  L  C  K  Y  L  T  R  V  H  V  R  R  R  L  L  I  M  L  T  A  V  K  E  Q  L  T  C  T  I  L  L  *  K  K  E  T  E  E  T  L  F  Y  *  I  V  W  L  K  V  Y  R  R  K  *  K  A  P  R  S  L  P  N  A  Q  V  A  R  I  H  M  V  L  H  L  A  R  M  G  T  L  Q  K  M  Q  F  A  H  M  Q  E  E  I  M  L  L  V  F  W  M  K  W  R  M  L  E  M  H  *  T  V  K  L  P  L  L  C  Q  L  K  Q  R  *  S  L  A  I  Q  :  A  M  L  P  P  R  K  I  C  G  C  L  H  R  K  Q  K  R  L  L  V  C  L  P  Q  V  C  P  A  L  L  K  L  *  R  G  S  T  S  V  A  H  T  P  C :   I  S  L  T  N  L  P  R  N  T  F  P  T  A  R  *  R  F  Y  F  I  I  *  K  G  K  L  G  L  *  I  Q  F  R  L  Q  E  Y  K  H  H  I  P  F  A  E  G  G  Y  L  L  F  A  T  I  T  L  I  W  E  I  P  A  F  L  S  L  S  A  S  V  N  C  V  C  V  F  L  R  R  K  R  K  E  V  I  T  V  V  R  *  L  M  K  D  *  L  L  I  M  Q  K  I  L  D  V  S  P  G  K  W  D  R  V  L  I  K  R  R  L  *  H  M  I  K  K  D  L  L  L  K  K  R  N  M  A  I  C  *  R  I  I  S  S  I  L  S  Q  R  L  A  V  E  I  Q  :  L  S  G  N  L  L  V  L  K  I  N  R  V  L  S  P  R  A  V  C  L  *  N  Q  Y  L  K  R  N  *  P  L  S  L  S  F  P  I  S  L  I  S  C  E  S  *  K  N  S  T  L  V  A  L  T  P  * :   K  F  H  V  G  S  Q  W  N  T  S  Q  T  A  E  Q  R  L  C  F  R  T  *  K  E  N  V  G  L  *  I  Q  F  R  L  *  R  Y  K  R  C  T  H  S  V  E  D  G  R  H  L  S  G  R  M  T  S  R  W  E  I  S  A  Y  L  S  S  L  G  N  M  K  C  V  Y  M  Y  V  Q  L  G  R  R  G  *  I  T  K  M  G  Q  L  L  K  S  R  I  S  L  L  P  *  Q  A  R  D  L  W  C  E  T  L  *  E  R  L  L  L  A  *  Y  K  :  A  W  C  F  T  G  R  *  R  N  L  N  T  W  D  Q  K  R  Y  T  Y  Q  C  Y  G  E  A  L  E  *  I  I  K  H  L  T  R  L  A  I  C  L  Q  *  L  R  C  F  V  V  G  I  V  *  A  L  F  S  D  S  V  L  Y  K  Y  C  Q  K  S  F  S  F  S  *  C  K  *  V  C  F  *  F  N  C  P  E  T  I  C  C  L  V  C  I  C  I  N  S  N  Q  T  E  H  L  L  E  *  E  I  K  V  S  L  Y  W  I   </second_frame>
            <third_frame>   Y  L  I  T  C  L  I  S  H  P  Q  N  L  K  K  W  G  *  R  N  F  V  G  F  F  R  V  L  A  S  K  I  *  V  K  K  R  G  N  R  D  V  R  C  K  K  A  S  F  S  C  G  F  *  P  F  H  E  F  *  K  I   : E  N  S  I  K  I  H  *  T  Y  G  R  R  G  F  W  N  N  S  S  G  G  S  Q  W  K  C  L  A  C  G  L  N  T  A  R  *  W  F  I  L  Q  *  W  M  G  F  I  C  *  R  S  L  P  *  N  R  G  F  F  G  F  Q  I  *  R  *  F  A  F  H  C  A  S  I  *  R  E  F  M  *  E  G  G  F  L  *  C  *  L  Q  S  R  S  N  *  L  V  Q  S  C  S  E  K  K  R  P  R  K  L  C  F  I  R  L  Y  G  *  R  C  T  E  E  N  E  K  H  R  D  P  F  R  M  H  K  *  P  G  Y  T  W  S  C  I  *  Q  G  W  V  H  S  R  R  C  S  L  L  I  C  R  K  K  L  C  C  *  F  S  G  *  N  G  E  C  W  R  C  I  K  Q  *  S  Y  H  C  C  A  S  S  S  K  D  N  L  *  Q  S  R :   Q  C  F  L  R  E  R  Y  V  V  A  C  T  G  S  R  K  G  C  W  F  V  Y  L  K  F  A  Q  L  Y  *  S  Y  E  E  V  Q  H  Q  W  L  I  H  P   : A  Y  P  L  P  I  C  H  G  T  P  S  Q  L  Q  G  E  D  F  T  S  *  F  R  R  E  N  L  D  C  E  F  N  S  D  Y  K  S  T  N  I  T  Y  L  L  R  R  V  V  I  F  C  S  R  Q  *  H  *  F  G  R  Y  L  H  F  *  A  C  P  Q  V  *  I  A  C  A  C  S  *  G  G  K  G  R  K  *  L  Q  *  *  G  S  *  *  R  T  S  Y  *  L  C  K  K  F  W  M  *  V  Q  E  S  G  I  E  F  *  S  S  E  G  Y  D  I  *  *  K  R  I  Y  S  *  K  R  E  T  W  R  Y  V  E  E  S  S  A  P  F  S  V  K  D  *  Q  W  R  F  S :   Y  Q  E  T  Y  *  F  S  R  *  T  G  F  F  H  Q  E  L  Y  V  Y  E  I  S  T  *  R  E  I  S  R  *  V  F  H  F  Q  F  P  S  F  R  A  N  H  E  K  I  Q  H  *  W  L  L  H  L   : E  S  S  M  S  V  L  N  G  T  P  P  K  L  Q  N  R  D  C  A  S  E  L  E  R  R  M  L  D  C  K  F  N  S  D  C  K  G  T  N  A  A  H  I  L  W  R  M  V  G  I  C  P  G  E  *  H  P  D  G  R  Y  L  H  I  *  A  H  W  E  I  *  N  A  C  T  C  M  C  N  W  E  E  G  V  R  L  P  K  W  D  S  S  *  R  V  G  Y  P  C  F  L  D  K  L  E  T  F  G  V  K  H  C  R  K  D  Y  F  L  R  N  T  R :   L  G  V  S  L  E  D  N  E  T  *  I  H  G  I  R  K  G  T  H  I  N  V  M  E  K  H  L  S  R  L  S  N  I  *  L  G  W  P  Y  A  F  S  S  L  D  V  L  L  L  A  L  S  E  H  S  F  Q  T  L  C  C  I  S  T  A  R  K  A  S  H  F  L  D  V  N  K  C  V  F  S  S  I  V  L  K  Q  S  A  V  W  S  V  Y  V  *  T  V  I  R  Q  N  I  F  *  N  E  K  L  K  F  H  S  T  G  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95839" stop="95922"/>
                    <exon start="96682" stop="97273"/>
                    <exon start="97732" stop="97865"/>
                    <exon start="98890" stop="99355"/>
                    <exon start="99447" stop="99616"/>
                    <exon start="101101" stop="101415"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1758</number_coding_nucleotides>
                  <number_encoded_amino_acids>586</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KREETEMLDARRPHFLVGFNPFMNSEKLKIPSKFIKHMEGGDSGTTVLVGPSGNAWPVDLIQQDDGLFFNNGWVSFVKDHCLETGDSLVFRYDGDLHFTVQVFDESSCEKEASYNADCSQGATDLYNLALKKRDRGNSVLLDCMVEGVPKKMKSTEIPSECTSSQDTHGLASSKDGYTPEDAVCSYAGRNYAASFLDEMENAGDALNSKVTIAVPAQAKIIFSNPGNASSEKDMWLPAQEAEKVAGLFTSSLPSFTKVMKRFNISGSYTLHIPYQFATEHLPNCKVKILLHNLEGKTWTVNSIPTTRVQTSHTFCGGWLSFVRDNNIDLGDTCIFELVRKCELRVRVLKAEKEGSDYSSKVVDEGLVIDYAKNSGCKSRKVGSSSDQAKVMTYDKKGSTPEKEKHGDMLKNHQLHSQSKISSGDSAIRKPTSSQDKQGSFTKSCMSMKSVPEEKLAAESFISNFPHFVRIMKKFNISGSYTLKVPCRFSMEHLPNCRTEIVLQNLKGECWTVNSIPTVKVQTLHTFCGGWSAFVRENDIQMGDICIFELIGKYEMRVHVCAIGKKGLDYQNGTAPKESDILASLTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 27 chains have been computed
$ 
$ memory statistics:
$ 47072 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 2139 bytes was the average size of a spliced alignment
$ 26056 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1532 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 30 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 15:02:35
-->
