<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-26 18:02:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0110L05-9rvIY/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-lNYITW/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lNYITW/sgn_marker_seqs" ref_id="SGN-M6725" ref_strand="+" ref_description="SGN-M6725 C2_At1g27600 [cosii_markers]">
      <seq>ttgattatgtatccaggaaactgttgattgtggttactccgacttataatagggcacttcaagcttactatcttcttagattaagcgaggtgttgaagcttgtaaaatcacctctgttgtgggttgtggttgagatgaatgtggcgtctgcagagactgcagacattttgaggaagacaggagttatgtatcgccatctggtgtgctccaagaacatgacagatataaaagaccgcggggtgcaccagagaaatgttgcattggagcatattgaacatcataggctcaatggaattgtttactttgcagatgatgataatatctactcacttgagttgtttgagagcattagatcgatcaatcgttttggcacttggcctgttgctatgctagcacaaagcaaaagtaaagcaatactggagggccctgtgtgcaatggaagtcaagttattgggtggcacaccaatgagaagagtaagcaacttagaagatttcatgtcgatatgtctggttttgccttcaatagcactatattatgggatccaaagaaatggcatcgaccaacttcagatcccatacgacagttggacaatgtgaaggagggtttccaagagaccactttcatagaacaaattgttgaagacgaaagccaaatggaggctgtccctcctggttgctcaagggtattgaattggcaccttcatttggaagctcacggagctgtctatccaggaggctggctgcttcaaaagaaccttgatgccattatctctaccacatgagaaacacaagcaaggtgcaggaactctaaatggtgtccatgaaggccagtgctaatcccagtaggaagctatcattttcaagctgatcaggggaattactagattgccaaagttgaagcagcaagcatgccttcaatgtcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110L05-9rvIY/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0110L05.1" temp_strand="+" temp_description="C04HBa0110L05.1  CU222535.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110L05 sequenced_by:sanger upload_account_name:uk">
        <position start="34833" stop="41657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35133" g_stop="35493" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35494" i_stop="40390" i_length="4897">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40391" g_stop="40640" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="611" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40641" i_stop="40750" i_length="110">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40751" g_stop="40965" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="826" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40966" i_stop="41258" i_length="293">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41259" g_stop="41357" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="827" r_stop="926" r_length="100" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110L05.1" gen_strand="+" ref_id="SGN-M6725" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35133" e_stop="35493"/>
          <exon e_start="40391" e_stop="40640"/>
          <exon e_start="40751" e_stop="40965"/>
          <exon e_start="41259" e_stop="41357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTATGTATCCAGGAAACTGTTGATTGTGGTTACTCCGACTTATAATAGGGCACTTCAAGCTTACTATCTTCTTAGATTAAGCGAGGTGTTGAAGCTTGTAAAATCACCTCTGTTGTGGGTTGTGGTTGAGATGAATGTGGCGTCTGCAGAGACTGCAGACATTTTGAGGAAGACAGGAGTTATGTATCGCCATCTGGTGTGCTCCAAGAACATGACAGATATAAAAGACCGCGGGGTGCACCAGAGAAATGTTGCATTGGAGCATATTGAACATCATAGGCTCAATGGAATTGTTTACTTTGCAGATGATGATAATATCTACTCACTTGAGTTGTTTGAGAGCATTAGATCGATCAAGTAAGTTGAGATTCATCAGTCTTGTTTACATGACTTGTCTTTGTTTTGTCCTGCTGTGAGCATGTTCAGGATGATGTTATGTGCTTTATGTAGATGTTCAAGTCGATAATAGTGAATAGTCTAGAGCTATTTCACATATATTACAACTTCACTAACAAATTCTTTTCCTGGTGTCCTCGGTTCATCACTCTTCATAGTTATAAGAATAACAGTTGTAGATTAGACCACTGGTCGTGTGATTTTTGGACTTAATTATTATCTCAATTCTTCCTCAAAATAGCAGTCCTTAGATTAGAAGCTGAGGAATGACCACCTTGTTAGTGTATAATGGAATCGCCTTCTTCTGGTAAAATATAAATTTTGTGAATTTTATTAGTGGACAAAAAGAGTTACATGATTTGGATGACCGACTTTTATGAAGGGCTATAACTCTGACATGCCCACCAGATGTAACATCTTCATCATTAGTGTGATCATGTGTTTGTTCATTCTTAATTGATGTCAAAGAAAAAGCTTGGCTTGACAGAGATGTACTTCAACCACTTGGTTGGACAGATGTGCTTCAATCTTTTCAGTAGAAATCTTGACTTCTTTCAATCCAAATAAGAGAACAGAGTAACCACTCAATGTGGAAGTTGGATATAGAAGTATTAGTAAGAACTAGCCATAGACTTGTTACACCTGTTCTTTTGTCGATGCCTAGAATTGATACATTAATTTCACTTGTCATCTTCTTTCTTTGTAGAATTCTTTGTGATGCCTCTATCCACTTCTTTTTGTCATTCACCTGCTTCATAGAAAATCCTTGTGATGCCTTCATCCACTTTATCTTCTTTTCAAGGGGTTTTAAAGAAACATCTAGTCTTCCCATCTTTATTATGAGAGTCAGGACTACATTCATTACTAATAATTTTCCACTTTTTTCTTGTTATTTGGAATTGTAAATGTCATACTACGTTTTATTACTATAATTAGTACGGCATGCTTGCTATCATAGTCAACAATTAGAACCCTTAATAAAATGTACTGTATTTATAACTATAAGAGTCCTCTTTTATAGCATAGGTGAAATTAACTTATTTGTCTCTTCGACTTCTAACAAATAGAACTTATTCATGTCTCTGCTTAGTCAAAAGCTGTCTGATGTTTACATAAAAATGACTTTACTGGTATCGTTCCATAAATTGGTAGATTGACCCTCGCAATAGTGAATTTGAGTGTCCTATGGGCTGCTCCGTGAAGAGTAGCTGCTACTTATCTTCCTTGATGTCTACCTCACACAAGTAAAGCTTAAAAGAACTGCCACTACAAAACTTTAAACTTGGTCAAGATGTCTTGATACTTGTCACCAAGGAATTCAGTCTATAATATTCCTTCGTAAATTTCTTATTGTTTAATATGTAGAAAATAAGTCTCACTGAGGATTAGAAGCAGTGAGCTCCGAATTTGCCTGCAGAGAGAAGTATTGCGACTTCTTTATGCAGCAAAACAAGCCTCAATGGACTGCTTTTACTGGAAGTTAAATCTCAACCAAGAGAGGTGCAAATAATATGTCAGAGAGATGAGCTTCCCTGCTGCAACTGAATGAATTGTATTTAAAAGATATGGTTTCTACGATGTAAGACTATCTATATATAGTTACTCGAAACCCGATCCATATCCTAGAAAACTAGTAATATTCCAAGTAGTTAATGCAAAAGAAATGAATCCTGAACCATCTATGGGAATTAAATCCAAATACAGTTTGAGCTCAAATAACAACATAGACTCGACAAGTTAGTATTGATCAAAAAACACACTAGACAAGTCAGTAACTACTTGTGATGCTCCTGGAAAATATTTTGTTCTTTTCTTGATAATGGTAATGTATTCCTCAGAATCAAGGATATGTTGGAGACCTCCAAAAAGTTGTGGATTAGTCAACAAAGACTAATCAATTACAATGATCCTAAGTCCTAACAGATCTGTTAATTGTTCAGCTTCCTCTACCCTTTCTTCTTTACCCCAAACATAAAAGGTAACAATACAATTCCATTTGATCTTATGAGGGGGACTAAGACTACCTTCAGAGCATCTTTTGTTTCTTTCTTTGCATGTTGTCCACCATATACAAGATGGGATGATTCTCAACCATTTCTTGTGACTCTTGCTGCCTCCTCTCCTGATCCAGCAACTGAGAAGATCTGTTGTGTGCTCGAGCATTATCCACTTGCTTTGAGAGAGACTAAGGAATAGGGCCCAAATTTGTGAGGTCACTTTACAATGCTCCTGGGAAATAGTATATTCATGTCAAACATGGGTCAGAAATGTATATGCTAGACTGTTGTCTTCTTCACTGAAAGAGGCAATGTATTTTCTTGGAATGTCAGTTGATTTGTGAAGAACGCTCAGTAGGTGACCTTGTGACTCCAAAAATAGAAGCTGCATATCTTTGTCCACTATCTATTCAAGATAGAATCTATTAAGTGTTGCAGTATTCCGATTCTTTTCTGTTCTTCCTGCATCAGCTCCTTCATGGAAATTCTTGGATCTCCTGATAGTAATTGTTTGAACTCTTCATACATGTTCGGATCCAATTTCTAGAGTTCTACCTCTGAGATCAATTGATTTGCATAATGAGGAAAAGATGATAGAAATTGCTGCCTCAAGAATGAACTTCTTTACAGAGCCTTGTCTCTAAGGTTCTAGGTTATTGCTCATCCCATTCTGATCTTGTAGCTGTTCTCAGATATCATTGGATTAAATTCATTTACTCGGTAATTTAAAAATTGGACTATTTTGCAGACCTTTAGGCAAATTCCAGGGCATTAGCATTTGATATGATCTTTGTTAATGCTTTAACATGGACCAATTTTCTTCCACCTAAAAGTTATGAAAAGATCCCTTAGGAAATCTTACCTTCTAGTAGTTGAAAACTTGGTTTGCAACAGCAATTTACTTTGAGCAACATTATCACCTCTGCTGCATCCTCGTTTTCTTATTGCTTGCCTCTTTTGCTACACCATACTTCATTTTGGATCTTTGAAGTGAACTTCGTTCCAGTCTTCTAATGTGCTTGACGTTTGCCGTCCTTATTAATTTACGCAGTCTCAGCCTTGAGAAAAAATTGACCATTCTTTGTGTGATCACCTACCGTGTTATAAAATAGGTTACAAATACTTCCAAGCAACACCTCCCTTTTGGCTATAGGAATTGTGTTAGAAATAGATCAGTTTAGCTCCCAACTTTTCCCGCAAAGTAATCCAATGAGGCAATGACTCTTAAATGGTCGAGACGAAGGTCATAAATATGACTCTTAAATGGTAACATATACCATATTGAATATATCTCACAGGTGGATGTTTTAAAAAGAATCTCACAGATGGCTGTGATTCATGCCGAATAGCTCATGAAATTTCTCCCGACAACATAATTTTCAGAGGATACAAAGGTTGGTTTTTTTGCCACAATTGACAAATGTAACGGGTAGTAAATTGTGGTTTCCAATTTTTATTGCTTCCTCAAATCCTTGTTTGACGACAATCAATTAATCTTCTTAGGCTTTTGAATATTTGTGGATTTAATCTCACCAATTTAAAAATAATAATAAATAAATTGTGTTCCTCTTCCATAGAATGCGAAGTTAATGATCATTACTGTGTTTCCCCCAGAAATTCGTCCTCTGATCCTTGGCTCCCTCTAACTTAAGCATTATATTGTCCAAAGAAAAATTAATCTTTCTGCTTGCTCTGGCTGCAATCCATGATCTTCGCTTATGATAGGAGTTCATAGCAACTTATGAATTGAAGGAAATAATTAAATTTTTTTTGATATACTGTATTATGAGCAGTGAGAGGTTGAACTGTAATTCTTTTGCCCCTGTTCTTTCATTACTTTTGCTGTTCGATAAACCTTGGGAAATTTGCGCATATGGTGGACCATATGGAAGGAAAGGAACGAGAGAATTTTCCAAGGAAGATCAAAGGGAAATGCATTTCTACTTTATGTTTTTGGTGTAAAGAGCAATGAATAGTAAATGAAATACAGATAATGGATTTCCTAGGCTTATTGTAATTAGCTATCTCTGCAAGCACACTTTTGGAGGTGGCCAGAAGAATACATGTAACCAATTTCAAAAAAAAAAAAAAACACCTTCGGGAATTTCCTCAGCAATAGACAACAAATACTTCTTGTCCATGCTTTAGTCATATTCATATGATTCCTTCTTTGTGAGGACCAGCGAGTGCTGCTCGCAAGGTATAATAAGAGCCAATGCATGTAAGATATCTTTGTTGTATTTTGCTCTATAGTTTTATTTTTTTTCTTGGACTTGGTAACTTAGTTTTAGCATTTACTTGAATAAAATCATCTAACAGGGTTGCTGCAAGGTTTGAGCTTTCACTATGACAGATTACCATGCTTAGAGTTCTGCATGAATTCAGTAATATGTAACCTGACTTGAGATTCTGCCTGAGTGTCGAAGTAACTGATCTATTTTTTTGTTCCCAGATCCCAGCTACTTCCCTTAAAGAAAGTAGGCTCTTCCATGCTATTGAAATTTGTTGTGGAAAGATGTTGCAACTCTTCTTCTTTTTCTTTTTAATACTAAAATAAGCACAACTATTCAATAAAACAAACTTATATCCTCTTCTGGGACACACTTCTGGTGAAATTCTTTCTTATCTAGGAAGTATGGTAAAGTAAAATGGTTGAGCTAGGACATAAGTAACTATTTATATTATTGTTGGTATGAGAGGTAATATGTATGTTGTTACTTGCGAATATGACTGTTTTTAGATTCTATAAGTTGAAGGAGAGCACATTGTTTTAGCAGATTTGACGTCATTGTTGGAATATTCTCCTTTTGTCTTTATTTTTTCTTATCTGCTTATATTTTCTTGTGATCTCCACTTTGTAGTCGTTTTGGCACTTGGCCTGTTGCTATGCTAGCACAAAGCAAAAGTAAAGCAATACTGGAGGGCCCTGTGTGCAATGGAAGTCAAGTTATTGGGTGGCACACCAATGAGAAGAGTAAGCAACTTAGAAGATTTCATGTCGATATGTCTGGTTTTGCCTTCAATAGCACTATATTATGGGATCCAAAGAAATGGCATCGACCAACTTCAGATCCCATACGACAGTTGGACAATGTGAAGGAGGGTTTCCAAGTATGCTTCATATTCCGCCTCCTTTAAAAAAATTTATTTCTTTACTTTGGGGATAGAAGCCTGCCTGAACAGGTTGAAGTTGGAAATTTGCTCACAATGATTACTTGCAGGAGACCACTTTCATAGAACAAATTGTTGAAGACGAAAGCCAAATGGAGGCTGTCCCTCCTGGTTGCTCAAGGGTATTGAATTGGCACCTTCATTTGGAAGCTCACGGAGCTGTCTATCCAGGAGGCTGGCTGCTTCAAAAGAACCTTGATGCCATTATCTCTACCACATGAGAAACACAAGCAAGGTGCAGGAACTCTAAATGGTGTCCATGAAGGTCAGTGCTTCTTATAATCACTAAACCCACAACTTCCCTTGTCTTGAAAAGGGAATGGTCAAACGCGAAATAAGTGAACTAGGGGTTGGTGGGGTGTGAGGAGTAGCTTCTCTTAATTAACATCATTTTATTCCCAAAATGAAGATTCATTCTCCCCCCGCTCTCCCTTTTGTTGCTAATATCCAGAGACCTTTTTGGCATTATTGTTGGTTCTGCTGCCGTGTCCAATGTCCATATTTAGTTTGACTGAGCAAGGAAAAAGGAAAGCACTCAGCTGCAATTCTTTTTGACAGGCCAGTGCTAATCCCAGTAGGAAGCTATCATTTTCAAGCTGATCA-GGGAATTACTAGATTGCCAAAGTTGAAGCAGCAAGCATGCCTTCAATGTCAAGC</genome_strand>
        <mrna_strand>TTGATTATGTATCCAGGAAACTGTTGATTGTGGTTACTCCGACTTATAATAGGGCACTTCAAGCTTACTATCTTCTTAGATTAAGCGAGGTGTTGAAGCTTGTAAAATCACCTCTGTTGTGGGTTGTGGTTGAGATGAATGTGGCGTCTGCAGAGACTGCAGACATTTTGAGGAAGACAGGAGTTATGTATCGCCATCTGGTGTGCTCCAAGAACATGACAGATATAAAAGACCGCGGGGTGCACCAGAGAAATGTTGCATTGGAGCATATTGAACATCATAGGCTCAATGGAATTGTTTACTTTGCAGATGATGATAATATCTACTCACTTGAGTTGTTTGAGAGCATTAGATCGATCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTTGGCACTTGGCCTGTTGCTATGCTAGCACAAAGCAAAAGTAAAGCAATACTGGAGGGCCCTGTGTGCAATGGAAGTCAAGTTATTGGGTGGCACACCAATGAGAAGAGTAAGCAACTTAGAAGATTTCATGTCGATATGTCTGGTTTTGCCTTCAATAGCACTATATTATGGGATCCAAAGAAATGGCATCGACCAACTTCAGATCCCATACGACAGTTGGACAATGTGAAGGAGGGTTTCCAA..............................................................................................................GAGACCACTTTCATAGAACAAATTGTTGAAGACGAAAGCCAAATGGAGGCTGTCCCTCCTGGTTGCTCAAGGGTATTGAATTGGCACCTTCATTTGGAAGCTCACGGAGCTGTCTATCCAGGAGGCTGGCTGCTTCAAAAGAACCTTGATGCCATTATCTCTACCACATGAGAAACACAAGCAAGGTGCAGGAACTCTAAATGGTGTCCATGAAG.....................................................................................................................................................................................................................................................................................................GCCAGTGCTAATCCCAGTAGGAAGCTATCATTTTCAAGCTGATCAGGGGAATTACTAGATTGCCAAAGTTGAAGCAGCAAGCATGCCTTCAATGTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lNYITW/sgn_marker_seqs" ref_id="SGN-M6725-2" ref_strand="+" ref_description="SGN-M6725-2 C2_At1g27600-2 [cosii_markers]">
      <seq>gtgaaatcacctctgttgtgggttgtggttgagatgaatgtggcgtctgcagaaactgcagacattttgaggaagacaggagttatgtatcggcatctggtgtgctccaagaacatgacagatataaaagaccgcggggtgcaccagagaaatgttgcattggagcatattgaacatcataggctcaatggaattgtttactttgcagatgatgataatatctactcacttgagttgtttgagagcattagatcgatcaatcgttttggcacttggcctgttgctatgctagcacaaagcaaaagcaaagcaatactagaggggcctgtgtgcaatggaagtcaagttattgggtggcacaccaacgagaagagtaagcaacttataagatttcatgtcgacatgtctggctttgccttcaatagcactatattatgggatccaaagaaatggcatcgaccaacttcagatcccatacgacagttggacaatgtgaaggagggtttccaagagaccactttcatagaacaaattgttgaagacgaaagccaaatggaggctgtccctcctggttgctcaagggtattgaattggcaccttcatctgaaagctcgtggagttgtctatccaggaagctggctgcttcaaaagaaccttgatgccgttatctctaccacatgagaaacacaangcatgtgcaggaactctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110L05-9rvIY/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0110L05.1" temp_strand="+" temp_description="C04HBa0110L05.1  CU222535.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110L05 sequenced_by:sanger upload_account_name:uk">
        <position start="34934" stop="41251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35234" g_stop="35493" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35494" i_stop="40390" i_length="4897">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40391" g_stop="40640" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="510" r_length="250" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40641" i_stop="40750" i_length="110">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40751" g_stop="40951" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="711" r_length="201" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110L05.1" gen_strand="+" ref_id="SGN-M6725-2" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6725-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35234" e_stop="35493"/>
          <exon e_start="40391" e_stop="40640"/>
          <exon e_start="40751" e_stop="40951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAATCACCTCTGTTGTGGGTTGTGGTTGAGATGAATGTGGCGTCTGCAGAGACTGCAGACATTTTGAGGAAGACAGGAGTTATGTATCGCCATCTGGTGTGCTCCAAGAACATGACAGATATAAAAGACCGCGGGGTGCACCAGAGAAATGTTGCATTGGAGCATATTGAACATCATAGGCTCAATGGAATTGTTTACTTTGCAGATGATGATAATATCTACTCACTTGAGTTGTTTGAGAGCATTAGATCGATCAAGTAAGTTGAGATTCATCAGTCTTGTTTACATGACTTGTCTTTGTTTTGTCCTGCTGTGAGCATGTTCAGGATGATGTTATGTGCTTTATGTAGATGTTCAAGTCGATAATAGTGAATAGTCTAGAGCTATTTCACATATATTACAACTTCACTAACAAATTCTTTTCCTGGTGTCCTCGGTTCATCACTCTTCATAGTTATAAGAATAACAGTTGTAGATTAGACCACTGGTCGTGTGATTTTTGGACTTAATTATTATCTCAATTCTTCCTCAAAATAGCAGTCCTTAGATTAGAAGCTGAGGAATGACCACCTTGTTAGTGTATAATGGAATCGCCTTCTTCTGGTAAAATATAAATTTTGTGAATTTTATTAGTGGACAAAAAGAGTTACATGATTTGGATGACCGACTTTTATGAAGGGCTATAACTCTGACATGCCCACCAGATGTAACATCTTCATCATTAGTGTGATCATGTGTTTGTTCATTCTTAATTGATGTCAAAGAAAAAGCTTGGCTTGACAGAGATGTACTTCAACCACTTGGTTGGACAGATGTGCTTCAATCTTTTCAGTAGAAATCTTGACTTCTTTCAATCCAAATAAGAGAACAGAGTAACCACTCAATGTGGAAGTTGGATATAGAAGTATTAGTAAGAACTAGCCATAGACTTGTTACACCTGTTCTTTTGTCGATGCCTAGAATTGATACATTAATTTCACTTGTCATCTTCTTTCTTTGTAGAATTCTTTGTGATGCCTCTATCCACTTCTTTTTGTCATTCACCTGCTTCATAGAAAATCCTTGTGATGCCTTCATCCACTTTATCTTCTTTTCAAGGGGTTTTAAAGAAACATCTAGTCTTCCCATCTTTATTATGAGAGTCAGGACTACATTCATTACTAATAATTTTCCACTTTTTTCTTGTTATTTGGAATTGTAAATGTCATACTACGTTTTATTACTATAATTAGTACGGCATGCTTGCTATCATAGTCAACAATTAGAACCCTTAATAAAATGTACTGTATTTATAACTATAAGAGTCCTCTTTTATAGCATAGGTGAAATTAACTTATTTGTCTCTTCGACTTCTAACAAATAGAACTTATTCATGTCTCTGCTTAGTCAAAAGCTGTCTGATGTTTACATAAAAATGACTTTACTGGTATCGTTCCATAAATTGGTAGATTGACCCTCGCAATAGTGAATTTGAGTGTCCTATGGGCTGCTCCGTGAAGAGTAGCTGCTACTTATCTTCCTTGATGTCTACCTCACACAAGTAAAGCTTAAAAGAACTGCCACTACAAAACTTTAAACTTGGTCAAGATGTCTTGATACTTGTCACCAAGGAATTCAGTCTATAATATTCCTTCGTAAATTTCTTATTGTTTAATATGTAGAAAATAAGTCTCACTGAGGATTAGAAGCAGTGAGCTCCGAATTTGCCTGCAGAGAGAAGTATTGCGACTTCTTTATGCAGCAAAACAAGCCTCAATGGACTGCTTTTACTGGAAGTTAAATCTCAACCAAGAGAGGTGCAAATAATATGTCAGAGAGATGAGCTTCCCTGCTGCAACTGAATGAATTGTATTTAAAAGATATGGTTTCTACGATGTAAGACTATCTATATATAGTTACTCGAAACCCGATCCATATCCTAGAAAACTAGTAATATTCCAAGTAGTTAATGCAAAAGAAATGAATCCTGAACCATCTATGGGAATTAAATCCAAATACAGTTTGAGCTCAAATAACAACATAGACTCGACAAGTTAGTATTGATCAAAAAACACACTAGACAAGTCAGTAACTACTTGTGATGCTCCTGGAAAATATTTTGTTCTTTTCTTGATAATGGTAATGTATTCCTCAGAATCAAGGATATGTTGGAGACCTCCAAAAAGTTGTGGATTAGTCAACAAAGACTAATCAATTACAATGATCCTAAGTCCTAACAGATCTGTTAATTGTTCAGCTTCCTCTACCCTTTCTTCTTTACCCCAAACATAAAAGGTAACAATACAATTCCATTTGATCTTATGAGGGGGACTAAGACTACCTTCAGAGCATCTTTTGTTTCTTTCTTTGCATGTTGTCCACCATATACAAGATGGGATGATTCTCAACCATTTCTTGTGACTCTTGCTGCCTCCTCTCCTGATCCAGCAACTGAGAAGATCTGTTGTGTGCTCGAGCATTATCCACTTGCTTTGAGAGAGACTAAGGAATAGGGCCCAAATTTGTGAGGTCACTTTACAATGCTCCTGGGAAATAGTATATTCATGTCAAACATGGGTCAGAAATGTATATGCTAGACTGTTGTCTTCTTCACTGAAAGAGGCAATGTATTTTCTTGGAATGTCAGTTGATTTGTGAAGAACGCTCAGTAGGTGACCTTGTGACTCCAAAAATAGAAGCTGCATATCTTTGTCCACTATCTATTCAAGATAGAATCTATTAAGTGTTGCAGTATTCCGATTCTTTTCTGTTCTTCCTGCATCAGCTCCTTCATGGAAATTCTTGGATCTCCTGATAGTAATTGTTTGAACTCTTCATACATGTTCGGATCCAATTTCTAGAGTTCTACCTCTGAGATCAATTGATTTGCATAATGAGGAAAAGATGATAGAAATTGCTGCCTCAAGAATGAACTTCTTTACAGAGCCTTGTCTCTAAGGTTCTAGGTTATTGCTCATCCCATTCTGATCTTGTAGCTGTTCTCAGATATCATTGGATTAAATTCATTTACTCGGTAATTTAAAAATTGGACTATTTTGCAGACCTTTAGGCAAATTCCAGGGCATTAGCATTTGATATGATCTTTGTTAATGCTTTAACATGGACCAATTTTCTTCCACCTAAAAGTTATGAAAAGATCCCTTAGGAAATCTTACCTTCTAGTAGTTGAAAACTTGGTTTGCAACAGCAATTTACTTTGAGCAACATTATCACCTCTGCTGCATCCTCGTTTTCTTATTGCTTGCCTCTTTTGCTACACCATACTTCATTTTGGATCTTTGAAGTGAACTTCGTTCCAGTCTTCTAATGTGCTTGACGTTTGCCGTCCTTATTAATTTACGCAGTCTCAGCCTTGAGAAAAAATTGACCATTCTTTGTGTGATCACCTACCGTGTTATAAAATAGGTTACAAATACTTCCAAGCAACACCTCCCTTTTGGCTATAGGAATTGTGTTAGAAATAGATCAGTTTAGCTCCCAACTTTTCCCGCAAAGTAATCCAATGAGGCAATGACTCTTAAATGGTCGAGACGAAGGTCATAAATATGACTCTTAAATGGTAACATATACCATATTGAATATATCTCACAGGTGGATGTTTTAAAAAGAATCTCACAGATGGCTGTGATTCATGCCGAATAGCTCATGAAATTTCTCCCGACAACATAATTTTCAGAGGATACAAAGGTTGGTTTTTTTGCCACAATTGACAAATGTAACGGGTAGTAAATTGTGGTTTCCAATTTTTATTGCTTCCTCAAATCCTTGTTTGACGACAATCAATTAATCTTCTTAGGCTTTTGAATATTTGTGGATTTAATCTCACCAATTTAAAAATAATAATAAATAAATTGTGTTCCTCTTCCATAGAATGCGAAGTTAATGATCATTACTGTGTTTCCCCCAGAAATTCGTCCTCTGATCCTTGGCTCCCTCTAACTTAAGCATTATATTGTCCAAAGAAAAATTAATCTTTCTGCTTGCTCTGGCTGCAATCCATGATCTTCGCTTATGATAGGAGTTCATAGCAACTTATGAATTGAAGGAAATAATTAAATTTTTTTTGATATACTGTATTATGAGCAGTGAGAGGTTGAACTGTAATTCTTTTGCCCCTGTTCTTTCATTACTTTTGCTGTTCGATAAACCTTGGGAAATTTGCGCATATGGTGGACCATATGGAAGGAAAGGAACGAGAGAATTTTCCAAGGAAGATCAAAGGGAAATGCATTTCTACTTTATGTTTTTGGTGTAAAGAGCAATGAATAGTAAATGAAATACAGATAATGGATTTCCTAGGCTTATTGTAATTAGCTATCTCTGCAAGCACACTTTTGGAGGTGGCCAGAAGAATACATGTAACCAATTTCAAAAAAAAAAAAAAACACCTTCGGGAATTTCCTCAGCAATAGACAACAAATACTTCTTGTCCATGCTTTAGTCATATTCATATGATTCCTTCTTTGTGAGGACCAGCGAGTGCTGCTCGCAAGGTATAATAAGAGCCAATGCATGTAAGATATCTTTGTTGTATTTTGCTCTATAGTTTTATTTTTTTTCTTGGACTTGGTAACTTAGTTTTAGCATTTACTTGAATAAAATCATCTAACAGGGTTGCTGCAAGGTTTGAGCTTTCACTATGACAGATTACCATGCTTAGAGTTCTGCATGAATTCAGTAATATGTAACCTGACTTGAGATTCTGCCTGAGTGTCGAAGTAACTGATCTATTTTTTTGTTCCCAGATCCCAGCTACTTCCCTTAAAGAAAGTAGGCTCTTCCATGCTATTGAAATTTGTTGTGGAAAGATGTTGCAACTCTTCTTCTTTTTCTTTTTAATACTAAAATAAGCACAACTATTCAATAAAACAAACTTATATCCTCTTCTGGGACACACTTCTGGTGAAATTCTTTCTTATCTAGGAAGTATGGTAAAGTAAAATGGTTGAGCTAGGACATAAGTAACTATTTATATTATTGTTGGTATGAGAGGTAATATGTATGTTGTTACTTGCGAATATGACTGTTTTTAGATTCTATAAGTTGAAGGAGAGCACATTGTTTTAGCAGATTTGACGTCATTGTTGGAATATTCTCCTTTTGTCTTTATTTTTTCTTATCTGCTTATATTTTCTTGTGATCTCCACTTTGTAGTCGTTTTGGCACTTGGCCTGTTGCTATGCTAGCACAAAGCAAAAGTAAAGCAATACTGGAGGGCCCTGTGTGCAATGGAAGTCAAGTTATTGGGTGGCACACCAATGAGAAGAGTAAGCAACTTAGAAGATTTCATGTCGATATGTCTGGTTTTGCCTTCAATAGCACTATATTATGGGATCCAAAGAAATGGCATCGACCAACTTCAGATCCCATACGACAGTTGGACAATGTGAAGGAGGGTTTCCAAGTATGCTTCATATTCCGCCTCCTTTAAAAAAATTTATTTCTTTACTTTGGGGATAGAAGCCTGCCTGAACAGGTTGAAGTTGGAAATTTGCTCACAATGATTACTTGCAGGAGACCACTTTCATAGAACAAATTGTTGAAGACGAAAGCCAAATGGAGGCTGTCCCTCCTGGTTGCTCAAGGGTATTGAATTGGCACCTTCATTTGGAAGCTCACGGAGCTGTCTATCCAGGAGGCTGGCTGCTTCAAAAGAACCTTGATGCCATTATCTCTACCACATGAGAAACACAAGCAAGGTGCAGGAACTCTAAA</genome_strand>
        <mrna_strand>GTGAAATCACCTCTGTTGTGGGTTGTGGTTGAGATGAATGTGGCGTCTGCAGAAACTGCAGACATTTTGAGGAAGACAGGAGTTATGTATCGGCATCTGGTGTGCTCCAAGAACATGACAGATATAAAAGACCGCGGGGTGCACCAGAGAAATGTTGCATTGGAGCATATTGAACATCATAGGCTCAATGGAATTGTTTACTTTGCAGATGATGATAATATCTACTCACTTGAGTTGTTTGAGAGCATTAGATCGATCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTTGGCACTTGGCCTGTTGCTATGCTAGCACAAAGCAAAAGCAAAGCAATACTAGAGGGGCCTGTGTGCAATGGAAGTCAAGTTATTGGGTGGCACACCAACGAGAAGAGTAAGCAACTTATAAGATTTCATGTCGACATGTCTGGCTTTGCCTTCAATAGCACTATATTATGGGATCCAAAGAAATGGCATCGACCAACTTCAGATCCCATACGACAGTTGGACAATGTGAAGGAGGGTTTCCAA..............................................................................................................GAGACCACTTTCATAGAACAAATTGTTGAAGACGAAAGCCAAATGGAGGCTGTCCCTCCTGGTTGCTCAAGGGTATTGAATTGGCACCTTCATCTGAAAGCTCGTGGAGTTGTCTATCCAGGAAGCTGGCTGCTTCAAAAGAACCTTGATGCCGTTATCTCTACCACATGAGAAACACAANGCATGTGCAGGAACTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lNYITW/sgn_marker_seqs" ref_id="SGN-M197-R" ref_strand="+" ref_description="SGN-M197-R TG555-R [rflp_markers_reverse]">
      <seq>acattttgaggaagacaggagttatgtatcgccatctggtgtgctccaagaacatgacagatataaaagaccgcggggtgcaccagagaaatgttgcattggagcatattgaacatcataggctcaatggaattgtttactttgcagatgatgataatatctactcacttgagttgtttgagagcattagatcgatcaagtaagttgagattcatcagtcttgtttacatgacttgtctttgttttgtcctgctgtgagcatgttcaggatgatgttatgtgctttatgtagatgttcaagtcgataatagtgaatagtctagagctatttcacatatattacaacttcactaacaaattcttttcctggtgtcctcggttcatcactcttcatagttataagaataacagttgtagattagaccactggtcgtgtgatttttggacttaattattatctcaattcttcctcaaaatagcagtccttagattagaagctgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110L05-9rvIY/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0110L05.1" temp_strand="+" temp_description="C04HBa0110L05.1  CU222535.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110L05 sequenced_by:sanger upload_account_name:uk">
        <position start="34995" stop="36097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35295" g_stop="35797" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110L05.1" gen_strand="+" ref_id="SGN-M197-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M197-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35295" e_stop="35797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTTGAGGAAGACAGGAGTTATGTATCGCCATCTGGTGTGCTCCAAGAACATGACAGATATAAAAGACCGCGGGGTGCACCAGAGAAATGTTGCATTGGAGCATATTGAACATCATAGGCTCAATGGAATTGTTTACTTTGCAGATGATGATAATATCTACTCACTTGAGTTGTTTGAGAGCATTAGATCGATCAAGTAAGTTGAGATTCATCAGTCTTGTTTACATGACTTGTCTTTGTTTTGTCCTGCTGTGAGCATGTTCAGGATGATGTTATGTGCTTTATGTAGATGTTCAAGTCGATAATAGTGAATAGTCTAGAGCTATTTCACATATATTACAACTTCACTAACAAATTCTTTTCCTGGTGTCCTCGGTTCATCACTCTTCATAGTTATAAGAATAACAGTTGTAGATTAGACCACTGGTCGTGTGATTTTTGGACTTAATTATTATCTCAATTCTTCCTCAAAATAGCAGTCCTTAGATTAGAAGCTGAGG</genome_strand>
        <mrna_strand>ACATTTTGAGGAAGACAGGAGTTATGTATCGCCATCTGGTGTGCTCCAAGAACATGACAGATATAAAAGACCGCGGGGTGCACCAGAGAAATGTTGCATTGGAGCATATTGAACATCATAGGCTCAATGGAATTGTTTACTTTGCAGATGATGATAATATCTACTCACTTGAGTTGTTTGAGAGCATTAGATCGATCAAGTAAGTTGAGATTCATCAGTCTTGTTTACATGACTTGTCTTTGTTTTGTCCTGCTGTGAGCATGTTCAGGATGATGTTATGTGCTTTATGTAGATGTTCAAGTCGATAATAGTGAATAGTCTAGAGCTATTTCACATATATTACAACTTCACTAACAAATTCTTTTCCTGGTGTCCTCGGTTCATCACTCTTCATAGTTATAAGAATAACAGTTGTAGATTAGACCACTGGTCGTGTGATTTTTGGACTTAATTATTATCTCAATTCTTCCTCAAAATAGCAGTCCTTAGATTAGAAGCTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lNYITW/sgn_marker_seqs" ref_id="SGN-M197-F" ref_strand="+" ref_description="SGN-M197-F TG555-F [rflp_markers_forward]">
      <seq>aattcggagctcactgcttctaatcctcagtgagacttattttctacatattaaacaataagaaatttacgaaggaatattatagactgaattccttggtgacaagtatcaagacatcttgaccaagtttaaagttttgtagtggcagttcttttaagctttacttgtgtgaggtagacatcaaggaagataagtagcagctactcttcacggagcagcccataggacactcaaattcactattgcgagggtcaatctaccaatttatggaacgataccagtaaagtcatttttatgtaaacatcagacagcttttgactaagcagagacatgaataagttctatttgttagaagtcgaagagacaaataagttaatttcacctatgctataaaagaggactcttatagttataaatacagtacattttattaagggttctaattgttgactatgatagcaagcatgccgtactaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110L05-9rvIY/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0110L05.1" temp_strand="-" temp_description="C04HBa0110L05.1  CU222535.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110L05 sequenced_by:sanger upload_account_name:uk">
        <position start="37240" stop="36163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36940" g_stop="36463" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110L05.1" gen_strand="-" ref_id="SGN-M197-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M197-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36940" e_stop="36463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGGAGCTCACTGCTTCTAATCCTCAGTGAGACTTATTTTCTACATATTAAACAATAAGAAATTTACGAAGGAATATTATAGACTGAATTCCTTGGTGACAAGTATCAAGACATCTTGACCAAGTTTAAAGTTTTGTAGTGGCAGTTCTTTTAAGCTTTACTTGTGTGAGGTAGACATCAAGGAAGATAAGTAGCAGCTACTCTTCACGGAGCAGCCCATAGGACACTCAAATTCACTATTGCGAGGGTCAATCTACCAATTTATGGAACGATACCAGTAAAGTCATTTTTATGTAAACATCAGACAGCTTTTGACTAAGCAGAGACATGAATAAGTTCTATTTGTTAGAAGTCGAAGAGACAAATAAGTTAATTTCACCTATGCTATAAAAGAGGACTCTTATAGTTATAAATACAGTACATTTTATTAAGGGTTCTAATTGTTGACTATGATAGCAAGCATGCCGTACTAATT</genome_strand>
        <mrna_strand>AATTCGGAGCTCACTGCTTCTAATCCTCAGTGAGACTTATTTTCTACATATTAAACAATAAGAAATTTACGAAGGAATATTATAGACTGAATTCCTTGGTGACAAGTATCAAGACATCTTGACCAAGTTTAAAGTTTTGTAGTGGCAGTTCTTTTAAGCTTTACTTGTGTGAGGTAGACATCAAGGAAGATAAGTAGCAGCTACTCTTCACGGAGCAGCCCATAGGACACTCAAATTCACTATTGCGAGGGTCAATCTACCAATTTATGGAACGATACCAGTAAAGTCATTTTTATGTAAACATCAGACAGCTTTTGACTAAGCAGAGACATGAATAAGTTCTATTTGTTAGAAGTCGAAGAGACAAATAAGTTAATTTCACCTATGCTATAAAAGAGGACTCTTATAGTTATAAATACAGTACATTTTATTAAGGGTTCTAATTGTTGACTATGATAGCAAGCATGCCGTACTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="35133" PGL_stop="41357"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35133" e_stop="35493"/>
            <exon e_start="40391" e_stop="40640"/>
            <exon e_start="40751" e_stop="40965"/>
            <exon e_start="41259" e_stop="41357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.696" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35133" e_stop="35493" e_length="361"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="35494" i_stop="40390" i_length="4897"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40391" e_stop="40640" e_length="250"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.696">
            <gDNA_intron_boundary i_start="40641" i_stop="40750" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40751" e_stop="40965" e_length="215"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40966" i_stop="41258" i_length="293"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="41259" e_stop="41357" e_length="99"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35133" stop="35493"/>
              <exon start="40391" stop="40640"/>
              <exon start="40751" stop="40965"/>
              <exon start="41259" stop="41357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35234" stop="35493"/>
              <exon start="40391" stop="40640"/>
              <exon start="40751" stop="40951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6725-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTATGTATCCAGGAAACTGTTGATTGTGGTTACTCCGACTTATAATAGGGCACTTCAAGCTTACTATCTTCTTAGATTAAGCGAGGTGTTGAAGCTTGTAAAATCACCTCTGTTGTGGGTTGTGGTTGAGATGAATGTGGCGTCTGCAGAGACTGCAGACATTTTGAGGAAGACAGGAGTTATGTATCGCCATCTGGTGTGCTCCAAGAACATGACAGATATAAAAGACCGCGGGGTGCACCAGAGAAATGTTGCATTGGAGCATATTGAACATCATAGGCTCAATGGAATTGTTTACTTTGCAGATGATGATAATATCTACTCACTTGAGTTGTTTGAGAGCATTAGATCGATCAA : TCGTTTTGGCACTTGGCCTGTTGCTATGCTAGCACAAAGCAAAAGTAAAGCAATACTGGAGGGCCCTGTGTGCAATGGAAGTCAAGTTATTGGGTGGCACACCAATGAGAAGAGTAAGCAACTTAGAAGATTTCATGTCGATATGTCTGGTTTTGCCTTCAATAGCACTATATTATGGGATCCAAAGAAATGGCATCGACCAACTTCAGATCCCATACGACAGTTGGACAATGTGAAGGAGGGTTTCCAA : GAGACCACTTTCATAGAACAAATTGTTGAAGACGAAAGCCAAATGGAGGCTGTCCCTCCTGGTTGCTCAAGGGTATTGAATTGGCACCTTCATTTGGAAGCTCACGGAGCTGTCTATCCAGGAGGCTGGCTGCTTCAAAAGAACCTTGATGCCATTATCTCTACCACATGAGAAACACAAGCAAGGTGCAGGAACTCTAAATGGTGTCCATGAAG : GCCAGTGCTAATCCCAGTAGGAAGCTATCATTTTCAAGCTGATCAGGGAATTACTAGATTGCCAAAGTTGAAGCAGCAAGCATGCCTTCAATGTCAAGC</gDNA_template>
            <first_frame> L  I  M  Y  P  G  N  C  *  L  W  L  L  R  L  I  I  G  H  F  K  L  T  I  F  L  D  *  A  R  C  *  S  L  *  N  H  L  C  C  G  L  W  L  R  *  M  W  R  L  Q  R  L  Q  T  F  *  G  R  Q  E  L  C  I  A  I  W  C  A  P  R  T  *  Q  I  *  K  T  A  G  C  T  R  E  M  L  H  W  S  I  L  N  I  I  G  S  M  E  L  F  T  L  Q  M  M  I  I  S  T  H  L  S  C  L  R  A  L  D  R  S   : I  V  L  A  L  G  L  L  L  C  *  H  K  A  K  V  K  Q  Y  W  R  A  L  C  A  M  E  V  K  L  L  G  G  T  P  M  R  R  V  S  N  L  E  D  F  M  S  I  C  L  V  L  P  S  I  A  L  Y  Y  G  I  Q  R  N  G  I  D  Q  L  Q  I  P  Y  D  S  W  T  M  *  R  R  V  S  K :   R  P  L  S  *  N  K  L  L  K  T  K  A  K  W  R  L  S  L  L  V  A  Q  G  Y  *  I  G  T  F  I  W  K  L  T  E  L  S  I  Q  E  A  G  C  F  K  R  T  L  M  P  L  S  L  P  H  E  K  H  K  Q  G  A  G  T  L  N  G  V  H  E   : G  Q  C  *  S  Q  *  E  A  I  I  F  K  L  I  R  E  L  L  D  C  Q  S  *  S  S  K  H  A  F  N  V  K  </first_frame>
            <second_frame>  *  L  C  I  Q  E  T  V  D  C  G  Y  S  D  L  *  *  G  T  S  S  L  L  S  S  *  I  K  R  G  V  E  A  C  K  I  T  S  V  V  G  C  G  *  D  E  C  G  V  C  R  D  C  R  H  F  E  E  D  R  S  Y  V  S  P  S  G  V  L  Q  E  H  D  R  Y  K  R  P  R  G  A  P  E  K  C  C  I  G  A  Y  *  T  S  *  A  Q  W  N  C  L  L  C  R  *  *  *  Y  L  L  T  *  V  V  *  E  H  *  I  D  Q  :  S  F  W  H  L  A  C  C  Y  A  S  T  K  Q  K  *  S  N  T  G  G  P  C  V  Q  W  K  S  S  Y  W  V  A  H  Q  *  E  E  *  A  T  *  K  I  S  C  R  Y  V  W  F  C  L  Q  *  H  Y  I  M  G  S  K  E  M  A  S  T  N  F  R  S  H  T  T  V  G  Q  C  E  G  G  F  P   : R  D  H  F  H  R  T  N  C  *  R  R  K  P  N  G  G  C  P  S  W  L  L  K  G  I  E  L  A  P  S  F  G  S  S  R  S  C  L  S  R  R  L  A  A  S  K  E  P  *  C  H  Y  L  Y  H  M  R  N  T  S  K  V  Q  E  L  *  M  V  S  M  K  :  A  S  A  N  P  S  R  K  L  S  F  S  S  *  S  G  N  Y  *  I  A  K  V  E  A  A  S  M  P  S  M  S  S </second_frame>
            <third_frame>   D  Y  V  S  R  K  L  L  I  V  V  T  P  T  Y  N  R  A  L  Q  A  Y  Y  L  L  R  L  S  E  V  L  K  L  V  K  S  P  L  L  W  V  V  V  E  M  N  V  A  S  A  E  T  A  D  I  L  R  K  T  G  V  M  Y  R  H  L  V  C  S  K  N  M  T  D  I  K  D  R  G  V  H  Q  R  N  V  A  L  E  H  I  E  H  H  R  L  N  G  I  V  Y  F  A  D  D  D  N  I  Y  S  L  E  L  F  E  S  I  R  S  I  N :   R  F  G  T  W  P  V  A  M  L  A  Q  S  K  S  K  A  I  L  E  G  P  V  C  N  G  S  Q  V  I  G  W  H  T  N  E  K  S  K  Q  L  R  R  F  H  V  D  M  S  G  F  A  F  N  S  T  I  L  W  D  P  K  K  W  H  R  P  T  S  D  P  I  R  Q  L  D  N  V  K  E  G  F  Q  :  E  T  T  F  I  E  Q  I  V  E  D  E  S  Q  M  E  A  V  P  P  G  C  S  R  V  L  N  W  H  L  H  L  E  A  H  G  A  V  Y  P  G  G  W  L  L  Q  K  N  L  D  A  I  I  S  T  T  *  E  T  Q  A  R  C  R  N  S  K  W  C  P  *  R :   P  V  L  I  P  V  G  S  Y  H  F  Q  A  D  Q  G  I  T  R  L  P  K  L  K  Q  Q  A  C  L  Q  C  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110L05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35135" stop="35493"/>
                    <exon start="40391" stop="40640"/>
                    <exon start="40751" stop="40921"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYVSRKLLIVVTPTYNRALQAYYLLRLSEVLKLVKSPLLWVVVEMNVASAETADILRKTGVMYRHLVCSKNMTDIKDRGVHQRNVALEHIEHHRLNGIVYFADDDNIYSLELFESIRSINRFGTWPVAMLAQSKSKAILEGPVCNGSQVIGWHTNEKSKQLRRFHVDMSGFAFNSTILWDPKKWHRPTSDPIRQLDNVKEGFQETTFIEQIVEDESQMEAVPPGCSRVLNWHLHLEAHGAVYPGGWLLQKNLDAIISTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35295" e_stop="35797"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35295" e_stop="35797" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35295" stop="35797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M197-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATTTTGAGGAAGACAGGAGTTATGTATCGCCATCTGGTGTGCTCCAAGAACATGACAGATATAAAAGACCGCGGGGTGCACCAGAGAAATGTTGCATTGGAGCATATTGAACATCATAGGCTCAATGGAATTGTTTACTTTGCAGATGATGATAATATCTACTCACTTGAGTTGTTTGAGAGCATTAGATCGATCAAGTAAGTTGAGATTCATCAGTCTTGTTTACATGACTTGTCTTTGTTTTGTCCTGCTGTGAGCATGTTCAGGATGATGTTATGTGCTTTATGTAGATGTTCAAGTCGATAATAGTGAATAGTCTAGAGCTATTTCACATATATTACAACTTCACTAACAAATTCTTTTCCTGGTGTCCTCGGTTCATCACTCTTCATAGTTATAAGAATAACAGTTGTAGATTAGACCACTGGTCGTGTGATTTTTGGACTTAATTATTATCTCAATTCTTCCTCAAAATAGCAGTCCTTAGATTAGAAGCTGAGG</gDNA_template>
            <first_frame> T  F  *  G  R  Q  E  L  C  I  A  I  W  C  A  P  R  T  *  Q  I  *  K  T  A  G  C  T  R  E  M  L  H  W  S  I  L  N  I  I  G  S  M  E  L  F  T  L  Q  M  M  I  I  S  T  H  L  S  C  L  R  A  L  D  R  S  S  K  L  R  F  I  S  L  V  Y  M  T  C  L  C  F  V  L  L  *  A  C  S  G  *  C  Y  V  L  Y  V  D  V  Q  V  D  N  S  E  *  S  R  A  I  S  H  I  L  Q  L  H  *  Q  I  L  F  L  V  S  S  V  H  H  S  S  *  L  *  E  *  Q  L  *  I  R  P  L  V  V  *  F  L  D  L  I  I  I  S  I  L  P  Q  N  S  S  P  *  I  R  S  *   </first_frame>
            <second_frame>  H  F  E  E  D  R  S  Y  V  S  P  S  G  V  L  Q  E  H  D  R  Y  K  R  P  R  G  A  P  E  K  C  C  I  G  A  Y  *  T  S  *  A  Q  W  N  C  L  L  C  R  *  *  *  Y  L  L  T  *  V  V  *  E  H  *  I  D  Q  V  S  *  D  S  S  V  L  F  T  *  L  V  F  V  L  S  C  C  E  H  V  Q  D  D  V  M  C  F  M  *  M  F  K  S  I  I  V  N  S  L  E  L  F  H  I  Y  Y  N  F  T  N  K  F  F  S  W  C  P  R  F  I  T  L  H  S  Y  K  N  N  S  C  R  L  D  H  W  S  C  D  F  W  T  *  L  L  S  Q  F  F  L  K  I  A  V  L  R  L  E  A  E  </second_frame>
            <third_frame>   I  L  R  K  T  G  V  M  Y  R  H  L  V  C  S  K  N  M  T  D  I  K  D  R  G  V  H  Q  R  N  V  A  L  E  H  I  E  H  H  R  L  N  G  I  V  Y  F  A  D  D  D  N  I  Y  S  L  E  L  F  E  S  I  R  S  I  K  *  V  E  I  H  Q  S  C  L  H  D  L  S  L  F  C  P  A  V  S  M  F  R  M  M  L  C  A  L  C  R  C  S  S  R  *  *  *  I  V  *  S  Y  F  T  Y  I  T  T  S  L  T  N  S  F  P  G  V  L  G  S  S  L  F  I  V  I  R  I  T  V  V  D  *  T  T  G  R  V  I  F  G  L  N  Y  Y  L  N  S  S  S  K  *  Q  S  L  D  *  K  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110L05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35297" stop="35497"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILRKTGVMYRHLVCSKNMTDIKDRGVHQRNVALEHIEHHRLNGIVYFADDDNIYSLELFESIRSIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="36940" PGL_stop="36463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36940" e_stop="36463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36940" e_stop="36463" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36940" stop="36463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M197-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTCGGAGCTCACTGCTTCTAATCCTCAGTGAGACTTATTTTCTACATATTAAACAATAAGAAATTTACGAAGGAATATTATAGACTGAATTCCTTGGTGACAAGTATCAAGACATCTTGACCAAGTTTAAAGTTTTGTAGTGGCAGTTCTTTTAAGCTTTACTTGTGTGAGGTAGACATCAAGGAAGATAAGTAGCAGCTACTCTTCACGGAGCAGCCCATAGGACACTCAAATTCACTATTGCGAGGGTCAATCTACCAATTTATGGAACGATACCAGTAAAGTCATTTTTATGTAAACATCAGACAGCTTTTGACTAAGCAGAGACATGAATAAGTTCTATTTGTTAGAAGTCGAAGAGACAAATAAGTTAATTTCACCTATGCTATAAAAGAGGACTCTTATAGTTATAAATACAGTACATTTTATTAAGGGTTCTAATTGTTGACTATGATAGCAAGCATGCCGTACTAATT</gDNA_template>
            <first_frame> N  S  E  L  T  A  S  N  P  Q  *  D  L  F  S  T  Y  *  T  I  R  N  L  R  R  N  I  I  D  *  I  P  W  *  Q  V  S  R  H  L  D  Q  V  *  S  F  V  V  A  V  L  L  S  F  T  C  V  R  *  T  S  R  K  I  S  S  S  Y  S  S  R  S  S  P  *  D  T  Q  I  H  Y  C  E  G  Q  S  T  N  L  W  N  D  T  S  K  V  I  F  M  *  T  S  D  S  F  *  L  S  R  D  M  N  K  F  Y  L  L  E  V  E  E  T  N  K  L  I  S  P  M  L  *  K  R  T  L  I  V  I  N  T  V  H  F  I  K  G  S  N  C  *  L  *  *  Q  A  C  R  T  N  </first_frame>
            <second_frame>  I  R  S  S  L  L  L  I  L  S  E  T  Y  F  L  H  I  K  Q  *  E  I  Y  E  G  I  L  *  T  E  F  L  G  D  K  Y  Q  D  I  L  T  K  F  K  V  L  *  W  Q  F  F  *  A  L  L  V  *  G  R  H  Q  G  R  *  V  A  A  T  L  H  G  A  A  H  R  T  L  K  F  T  I  A  R  V  N  L  P  I  Y  G  T  I  P  V  K  S  F  L  C  K  H  Q  T  A  F  D  *  A  E  T  *  I  S  S  I  C  *  K  S  K  R  Q  I  S  *  F  H  L  C  Y  K  R  G  L  L  *  L  *  I  Q  Y  I  L  L  R  V  L  I  V  D  Y  D  S  K  H  A  V  L  I </second_frame>
            <third_frame>   F  G  A  H  C  F  *  S  S  V  R  L  I  F  Y  I  L  N  N  K  K  F  T  K  E  Y  Y  R  L  N  S  L  V  T  S  I  K  T  S  *  P  S  L  K  F  C  S  G  S  S  F  K  L  Y  L  C  E  V  D  I  K  E  D  K  *  Q  L  L  F  T  E  Q  P  I  G  H  S  N  S  L  L  R  G  S  I  Y  Q  F  M  E  R  Y  Q  *  S  H  F  Y  V  N  I  R  Q  L  L  T  K  Q  R  H  E  *  V  L  F  V  R  S  R  R  D  K  *  V  N  F  T  Y  A  I  K  E  D  S  Y  S  Y  K  Y  S  T  F  Y  *  G  F  *  L  L  T  M  I  A  S  M  P  Y  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0110L05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 5 chains have been computed
$ 
$ memory statistics:
$ 8896 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2224 bytes was the average size of a spliced alignment
$ 6888 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3444 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 5 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-26 18:02:43
-->
