<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 05:09:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0111P03-u8U1l/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-qw5eSa/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qw5eSa/sgn_marker_seqs" ref_id="SGN-M39-F" ref_strand="+" ref_description="SGN-M39-F TG22-F [rflp_markers_forward]">
      <seq>tagagtcgacctgcagcagcaaacgcagccttctcttcctcagacatgggaaaattttgtgtttcctcactggtatcattttgccttcctactgaagcttgagaggttgacggttcaacaactggaatagctcctatcgtggctggcctgacattcagcttcttgttgttgacactaacagctaagtgatttccagccgatgaagaaactttagaactccgtttactgtctactgctgaaggatgactgcggataggaggtttgccaggtgctgcaatgtgtttgctcttcgaagtatcagtggcagtggattgtcttagtaatttcagaccaccattagcagccttctcctttcgaaaaagttctatccatacattgacaagctgacttgctacagcacgtatgtcacggctagtatgcacacagactttttctttaaccgttttcccaatacctggataaaatatgacaggaatagaatcagttaaatcaatgcaaggacaaagcaatacgctaatgatatgacaattataaggatcattagccattaatggatatagaaagcaaatattttgagtttatagcatacaagctgaaaaatatgaaacattaacagagaatattgatagccccgatggggttgtgcacataaataatttgaaggtacaaatcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-u8U1l/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="42238" stop="43502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42527" g_stop="43202" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-M39-F" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M39-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42527" e_stop="43202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGCAGCTTCTGCAGCAGCAAACGCAGCCTTCTCTTCCTCAGACATGGGAAAATTTTGTGTTTCCTCACTGGTATCATTTTGCCTTCCTACTGAAGCTTGAGAGGTTGACGGTTCAACAACTGGAATAGCTCCTATCGTGGCTGGCCTGACATTCAGCTTCTTGTTGTTGACACTAACAGCTAAGTGATTTCCAGCCGATGAAGAAACTTTAGAACTCCGTTTACTGTCTACTGCTGAAGGATGACTGCGGATAGGAGGTTTGCCAGGTGCTGCAATGTGTTTGCTCTTCGAAGTATCAGTGGCAGTGGATTGTCTTAGTAATTTCAGACCACCATTAGCAGCCTTCTCCTTTCGAAAAAGTTCTATCCATACATTGACAAGCTGACTTGCTACAGCACGTATGTCACGGCTAGTATGCACACAGACTTTTTCTTTAACCGTTTTCCCAATACCTGGATAAAATATGACAGGAATAGAATCAGTTAAATCAATGCAAGGACAAAGCAATACGCTAATGATATGACAATTATAAGGATCATTAGCCATTAATGGATATAGAAAGCAAATATTTTGAGTTTATAGCATACAAGCTGAAAAATATGAAACATTAACAGAGAATATTGATAGCCCCGATGGGGTTGTGCACATAAATAATTTGAAGGTACAAATCAGC</genome_strand>
        <mrna_strand>TAGAGTCG-ACCTGCAGCAGCAAACGCAGCCTTCTCTTCCTCAGACATGGGAAAATTTTGTGTTTCCTCACTGGTATCATTTTGCCTTCCTACTGAAGCTTGAGAGGTTGACGGTTCAACAACTGGAATAGCTCCTATCGTGGCTGGCCTGACATTCAGCTTCTTGTTGTTGACACTAACAGCTAAGTGATTTCCAGCCGATGAAGAAACTTTAGAACTCCGTTTACTGTCTACTGCTGAAGGATGACTGCGGATAGGAGGTTTGCCAGGTGCTGCAATGTGTTTGCTCTTCGAAGTATCAGTGGCAGTGGATTGTCTTAGTAATTTCAGACCACCATTAGCAGCCTTCTCCTTTCGAAAAAGTTCTATCCATACATTGACAAGCTGACTTGCTACAGCACGTATGTCACGGCTAGTATGCACACAGACTTTTTCTTTAACCGTTTTCCCAATACCTGGATAAAATATGACAGGAATAGAATCAGTTAAATCAATGCAAGGACAAAGCAATACGCTAATGATATGACAATTATAAGGATCATTAGCCATTAATGGATATAGAAAGCAAATATTTTGAGTTTATAGCATACAAGCTGAAAAATATGAAACATTAACAGAGAATATTGATAGCCCCGATGGGGTTGTGCACATAAATAATTTGAAGGTACAAATCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qw5eSa/sgn_marker_seqs" ref_id="SGN-M39-R" ref_strand="+" ref_description="SGN-M39-R TG22-R [rflp_markers_reverse]">
      <seq>cctgaagcgccaaggtttccatgtcaccgtgctcgaggccagaagtagaataggtggtcgtgtttttacagatcgctcgtctctatctgttccagtggaccttggtgctagcattattactggtattgaggcagatgtggcgactgaaagaagaccagatccttcttcgttgatttgtgcacagttgggtcttgaattgactgtattgaacagtgattgtcccctgtacgatgtagctactggccagaaagtaccagtagatctggatgaagcattggaagcagaattcaatagcttattggatgacatggtactgttggttgctcaaaaaggggagcatgcgatgcggatgtccctggaggatggtttggaatatgcccttaagaagcgtcagaaggcccggtttgcgagaaatcatatgggtaatgaatcacaaaaattatcagtgacagcagtggaatccatggcactttctgatgtcggagttcctcaaaataataattctaaggtagagatcttgagccccccagagaggagggtaatggattggcattttgctaacttggagtatggttgtgctgcattgcttaaagaagtctctcttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-u8U1l/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="45589" stop="44383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45289" g_stop="44683" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-M39-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M39-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45289" e_stop="44683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAAGCGCCAAGGTTTCCATGTCACCGTGCTCGAGGCCAGAAGTAGAATAGGTGGTCGTGTTTTTACAGATCGCTCGTCTCTATCTGTTCCAGTGGACCTTGGTGCTAGCATTATTACTGGTATTGAGGCAGATGTGGCGACTGAAAGAAGACCAGATCCTTCTTCGTTGATTTGTGCACAGTTGGGTCTTGAATTGACTGTATTGAACAGTGATTGTCCCCTGTACGATGTAGCTACTGGCCAGAAAGTACCAGTAGATCTGGATGAAGCATTGGAAGCAGAATTCAATAGCTTATTGGATGACATGGTACTGTTGGTTGCTCAAAAAGGGGAGCATGCGATGCGGATGTCCCTGGAGGATGGTTTGGAATATGCCCTTAAGAAGCGTCAGAAGGCCCGGTTTGCGAGAAATCATATGGGTAATGAATCACAAAAATTATCAGTGACAGCAGTGGAATCCATGGCACTTTCTGATGTCGGAGTTCCTCAAAATAATAATTCTAAGGTAGAGATCTTGAGCCCCCCAGAGAGGAGGGTAATGGATTGGCATTTTGCTAACTTGGAGTATGGTTGTGCTGCATTGCTTAAAGAAGTCTCTCTTCCT</genome_strand>
        <mrna_strand>CCTGAAGCGCCAAGGTTTCCATGTCACCGTGCTCGAGGCCAGAAGTAGAATAGGTGGTCGTGTTTTTACAGATCGCTCGTCTCTATCTGTTCCAGTGGACCTTGGTGCTAGCATTATTACTGGTATTGAGGCAGATGTGGCGACTGAAAGAAGACCAGATCCTTCTTCGTTGATTTGTGCACAGTTGGGTCTTGAATTGACTGTATTGAACAGTGATTGTCCCCTGTACGATGTAGCTACTGGCCAGAAAGTACCAGTAGATCTGGATGAAGCATTGGAAGCAGAATTCAATAGCTTATTGGATGACATGGTACTGTTGGTTGCTCAAAAAGGGGAGCATGCGATGCGGATGTCCCTGGAGGATGGTTTGGAATATGCCCTTAAGAAGCGTCAGAAGGCCCGGTTTGCGAGAAATCATATGGGTAATGAATCACAAAAATTATCAGTGACAGCAGTGGAATCCATGGCACTTTCTGATGTCGGAGTTCCTCAAAATAATAATTCTAAGGTAGAGATCTTGAGCCCCCCAGAGAGGAGGGTAATGGATTGGCATTTTGCTAACTTGGAGTATGGTTGTGCTGCATTGCTTAAAGAAGTCTCTCTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qw5eSa/sgn_marker_seqs" ref_id="SGN-M6761" ref_strand="+" ref_description="SGN-M6761 C2_At1g30845 [cosii_markers]">
      <seq>ctaccaatccagtggtttgcaggcgcctcccttatcgtgcttggagttattgttttgagcaagtcaagcatagagaagaaaactcatacaagttaaatttagagaaggtgtgagccaaatatcagatgtagattttaatggccttaacatgaactactgttaaattcatgtctcagaatcagtttattttgcactattgtggctgttgatataattgttgctcttgtaatattccaatactgggactctctccatgttgtacgactctacgtgatcgtgatgtcactgatgaaattacgttgaatatgtcattgttagtacttagtcctaatatctatttgaggactgctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-u8U1l/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="77490" stop="78438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77795" g_stop="78137" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="355" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-M6761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77795" e_stop="78137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTGCAGGCGCCTCCCTTATCGTGCTTGGAGTTATTGTTTTGAGCAAGTCAAGCATAGAGAAGAAAACTCATACAAGTTAAATTTAGAGAAGGTGTGAGCCAAATATCAGATGTAGATTTTAATGGCCTTAACATGAACTACTGTTAAATTCATGTCTCAGAATCAGTTTATTTTGCACTATTGTGGCTGTTGATATAATTGTTGCTCTTGTAATATTCCAATACTGGGACTCTCTCCATGTTGTACGACTCTACGTGATCGTGATGTCACTGATGAAATTACGTTGAATATGTCATTGTTAGTACTTAGTCCTAATATCTATTTGAGGACTGCTTTAAA</genome_strand>
        <mrna_strand>TGGTTTGCAGGCGCCTCCCTTATCGTGCTTGGAGTTATTGTTTTGAGCAAGTCAAGCATAGAGAAGAAAACTCATACAAGTTAAATTTAGAGAAGGTGTGAGCCAAATATCAGATGTAGATTTTAATGGCCTTAACATGAACTACTGTTAAATTCATGTCTCAGAATCAGTTTATTTTGCACTATTGTGGCTGTTGATATAATTGTTGCTCTTGTAATATTCCAATACTGGGACTCTCTCCATGTTGTACGACTCTACGTGATCGTGATGTCACTGATGAAATTACGTTGAATATGTCATTGTTAGTACTTAGTCCTAATATCTATTTGAGGACTGCTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qw5eSa/sgn_marker_seqs" ref_id="SGN-M1638" ref_strand="+" ref_description="SGN-M1638 T0861 [cos_markers]">
      <seq>ggttatgggaggcttggtcatcgagaacagaaggacgagtttgctcctcgacgagttgatgtttttacacggcagaatgtcttgcctccagatgcaatagtttcagcaggttctgccagctcatcatgtactgccggaggagggcagctttacatgtggggaaaaattaagagcacaggagatgattcgatgtatcccaaacctcttctggatttgagtgggtggaacctccgatgtatggattctggctatatgcaccactttgttggtgctgattcctcttgcataagttggggccttgcacagtgtggggagctgggttatggaccacatggacagaaatcttctgcagttcctaagaaggtggacattttagatggcatgcatgttatcagtgttgcttgtggatttgcccactccatggttgttattgataggacaaatgttgaggatcgacttgagcagcttgatgtatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-u8U1l/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="98876" stop="101815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99032" g_stop="99042" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99043" i_stop="99177" i_length="135">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99178" g_stop="99302" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="136" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99303" i_stop="100336" i_length="1034">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100337" g_stop="100418" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="218" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100419" i_stop="100866" i_length="448">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100867" g_stop="100989" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="341" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100990" i_stop="101076" i_length="87">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101077" g_stop="101130" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="395" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101131" i_stop="101217" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.570" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101218" g_stop="101287" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="465" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101288" i_stop="101500" i_length="213">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="101501" g_stop="101515" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="480" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-M1638" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99032" e_stop="99042"/>
          <exon e_start="99178" e_stop="99302"/>
          <exon e_start="100337" e_stop="100418"/>
          <exon e_start="100867" e_stop="100989"/>
          <exon e_start="101077" e_stop="101130"/>
          <exon e_start="101218" e_stop="101287"/>
          <exon e_start="101501" e_stop="101515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATGGGAGGTTCGTACATCCTATTTCATATTTGCATATTCAGATCTATGTTAATGGACGTCTGTTGAACCGCCTTGGCTTTCCATGCTCTTTTTGGGCCCTTATTATAATAAACATGAAATGTTTGATTTTTTTGGATTACAGGCTTGGTCATCGAGAACAGAAGGACGAGTTTGCTCCTCGACGAGTTGATGTTTTTACACGGCAGAATGTCTTGCCTCCAGATGCAATAGTTTCAGCAGGTTCTGCCAGCTCATCATGTACTGCCGGTATGATTCGTCTTGTTTTCTCTCCATTCTGTTTTGATATCATTATTGAAATCTTATCCAGCGCACTTATAAGTTACTGTGTATTCACATGAGATGACATCATATTTGATATCTCTATTAGCTGCACTATTTTACACAACTTTTTGTTTCCAAAAAAATCTTTCCGCAAGTTGTCCAAACAGCTCAAAGTATAAGTTGAATGAGTATTCATTCAAATGAGTGAATTGCCTTTATTAAATCTATGTTCTGACCAACTATGACTGTATATATAGTGTTTGCTCATTTAGTTATTGCTTTGAGAAGTGTGAACATCTAGCAAGCTGACAATTATATGTAAAAAATATGTAAAATTAATGTGCGGTTATATATGGTTTAGTATGGATTACTTGTGAAAATAGGTAAACGCTAATCTAATCCATGTTAATGCTTAACGAGTTCGATTAATTTCAAAATTTTGAAAACTCAAGTAGTTCGAGTATTTTCACATTAGTAACTCATGATAGTCTGTCTTTATTGCGGATTTGGTATTGGATATGTTTTGCAAAGCTTACATAGGTGGAGTTTAGAGTTTGAGTAATCATTGGTGAATGGTGATGAAAAAAAAGAAAATGTCCAAATAAAAAAAACATGATGCTAAATAGAAACAGCCTTTCTACCTTTGAGGTAGAGGTAATGTTTGCGTACACTCTATCTTCCCCGAATCCCCTTTTGGGACTACACTGGGTATTTTGTTGTATAATTGTAGTAATAGTATTTAAATATTATTATTATTAACTATTATTTTGTATGTAATTAATTTATTTTTCATTTTATTTTTATATGGTATGATGATGACATCAGTTTGAACTTAAATGGAGATAATTATTCATATAGCTGACCTCAACTTGGTTGGGGCTGAGACATATAGTTGTTGTTGAAGTAAATTTATGTTTGAAATTTGCGCTGCAAGCCTGCAAGTAATATGAAGATATGATGAGGTCACGTTCTACTAATTGCAAATGACTTGGCACTTCTAATAAAATATTCTTGTGCAGGAGGAGGGCAGCTTTACATGTGGGGAAAAATTAAGAGCACAGGAGATGATTCGATGTATCCCAAACCTCTTCTGGATTTGAGGTTATGATGTTTACAGCATTTGCATCTCCAATTTTTTATTTTGGTCATATAGTATTAGTGTAGATACATCATGAGTTGCATGTGTGATATATTCCACTTTTTTGGTTGAATTATTATTTATCCAAGATTTCTGGTTAGAACCATCTGCAATAACATATATGAAGATGGAGTTCAAATTTTCTTTTCCTTGTGTCTCGTGACTAGGGGTGATGGAGTGATTTCATTGCAAAGTCCTAGCAGAGAGTCTCTACCCTTGTATTTAATTATGAGATTCAATATTTCATGTTGGAATGTTATTTAAAATCAATCACATGGTAATAATGTATTGTTGTTTCTGCCCCCATAATCATTGGCTTGGATTGTTTTAAACTGGATATTCTCTTTTCAGAAGCACAATATTTTTTTCTTTGGTCGCTAAGTCTATATGACTGATAATCTGTATTTCTAGTGGGTGGAACCTCCGATGTATGGATTCTGGCTATATGCACCACTTTGTTGGTGCTGATTCCTCTTGCATAAGTTGGGGCCTTGCACAGTGTGGGGAGCTGGGTTATGGACCACATGGACAGAAGTAGGTTTGATTCATATCTTGTGTTTTACTTTTCTTTTCGGTGACTTGTGTGCGTTTTGCTCATTTATTTTGTCTATTTTTCTAAAGATCTTCTGCAGTTCCTAAGAAGGTGGACATTTTAGATGGCATGCATGTTATCAGGTTAGTGTATTTCTGTTTAAAAAAGAAATTTTGGAAGATGGAACTTTACATCAGAGTCTGAATCCTAGTGCGTTCCTTTTTGTGTAGTGTTGCTTGTGGATTTGCCCACTCCATGGTTGTTATTGATAGGACAAATGTTGAGGATCGACTTGAGCAGGTAATGTTATGGTTACAAGGTAGTGTTGCTTGTGAATTAGAATATGATTTTTTCAGTTTATATGTACAGGTTTTTGGTTGAGTGTAATATTTGTTTGTGGATGGGTGTTGGTGTGTGTCTGGGGGTGCTGATACATACATCAGTTTCAATTTTTCTTTATTTGTATTTATTTGCTCGTGTAAGTTATCTAATTTCTCCCGTTTTACCTGACAGCTTGATGTATATGAT</genome_strand>
        <mrna_strand>GGTTATGGGAG.......................................................................................................................................GCTTGGTCATCGAGAACAGAAGGACGAGTTTGCTCCTCGACGAGTTGATGTTTTTACACGGCAGAATGTCTTGCCTCCAGATGCAATAGTTTCAGCAGGTTCTGCCAGCTCATCATGTACTGCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGGCAGCTTTACATGTGGGGAAAAATTAAGAGCACAGGAGATGATTCGATGTATCCCAAACCTCTTCTGGATTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGGAACCTCCGATGTATGGATTCTGGCTATATGCACCACTTTGTTGGTGCTGATTCCTCTTGCATAAGTTGGGGCCTTGCACAGTGTGGGGAGCTGGGTTATGGACCACATGGACAGAA.......................................................................................ATCTTCTGCAGTTCCTAAGAAGGTGGACATTTTAGATGGCATGCATGTTATCAG.......................................................................................TGTTGCTTGTGGATTTGCCCACTCCATGGTTGTTATTGATAGGACAAATGTTGAGGATCGACTTGAGCAG.....................................................................................................................................................................................................................CTTGATGTATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qw5eSa/sgn_marker_seqs" ref_id="SGN-M8902" ref_strand="+" ref_description="SGN-M8902 C2_At5g39600 [cosii_markers]">
      <seq>cagaaatcagtgtagccaaaagaggagaaagagtgaaagaagatgttgaaattcttgtcaaaggtgaaaatcgaattcaatgccttagatccacgcatagcttcatgtatggagtttttggctcaatgtaatgctcctaaagccaaagaatcaaacccaagttgccaagttcaggtcaagcgccgcacggatgaccatccaccgcaaatctctgtcactttcgtcaatggagtcgagcagacctatgatgcaactactacaccggcacagaatatccgtaccatgattcttgaaaagggtcagtaccttgagactgaacagatgtttcgtgaagctggtgagaaatggcctgttatcattcctgatgaagagcttaaacaaccatttcttggaataaagccaaagaaagcagaagagaagaagcaataatcaaagctactcacacctagcttctcatcggggcattttctcagcgttagatcagctatatgacattccagagagatgaatcttcaaataggggcaaagctagctttttgttgcatttatgtcaacaagaatattagatttgtactagatcatgaatttgctatcctttgtattgtgagactttgaagtgccttcccaatcctcatttcttcttccatttattcctgcaaaagaataatatttccttccaaacggtttgatctcattttggaattgactcttaatacttctgtctttgaagtaaacagtggtatgtgcattttctggcaaagatatatttgtttcaaagtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-u8U1l/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="115372" stop="118943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115694" g_stop="116055" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="399" r_length="362" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116056" i_stop="118263" i_length="2208">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118264" g_stop="118648" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="786" r_length="387" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-M8902" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115694" e_stop="116055"/>
          <exon e_start="118264" e_stop="118648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGTTGAAATTCTTGTCAAAAGTGAAAATCGAATTCAATGCCTTAGATCCACGAATAGCTTCATGTATGGAATTTTTGGCTCAATGTAATGCTCCTAAAGCCAAAGAATCAAACCCAAGTTGCCAAATTCAGGTCAAGCGCCGCACTGATGACCATCCACCGCAAATCTCTGTCACTTTCGTCAATGGAGTCGAGCAGACCTATGATGCTACTTCTACACCCGCACAGAACATCCGTACTATGATTCTTGAAAAGGGTCAGTACCTTGAGACTGAACAGATGTTTCGTGAAGCTGGTGAGAAATGGCCTGTTATTATTCCTGATGAAGAGCTTAAACAACCATTTCTTGGAATAAAGGTGATAGCTTTTTCCCTTTTCCATTGATTGTATGTGGGTTTTTGTTGTGATTTGGTTGAGGCATATTGTCGAACAGGTTGAGTGTACCTACTTATGTTTTTTCTTTTAGTTTGATTTGTGTCCCCGGATTGGGGTTGAGAATGTTAGTGCAGTAGCGGAGTCGGGATTTTCAATAAGGTGATTCAAAATATATCAAAGTAAACACACAAAGAAACCAAATGAATCAAAAATATATAATTTTGGCCTTGTGTATGTATGTAGTTTAATTTTCAAGTGCTTGCACCCCTAACTCTGCCCTCAAGAGGGGGAGAGAAGATTATCATCTTTCTATAATTTTCTGAAATTTGTAGCTCTTTGTATAGATATGCTTCTCCAAGGATGATATAGTTTGTTTGTGATCCTCTACAACTGGACTGTCTAAATTGGATGATGAAATGAGAACTCTCTTGTTATGCTGGAGGTGTAACACATTCATGATTATTGTTACTATATTGTAGCTCGTCCTGTATCCGGGGCACCCTTATTTGCTATTTTGTATATCCCGTCCTGATTGAGCTCTTATCTGATGATCTATTTTCAAAGTCTTGGAACTTTTGTTTGCTAATTTTTAACGAATCCGTGTTTCTGGGTTTGTTAGCATCTGTACTGCCTATTGTTATCAACTAAAACATGAAAACTAATGAAAACTCCTTCAATTCGCATGAACTTGAGTAGAACAGTAAGATGCTCTCTTGTAGTAGTTAGTGGCTATCAATTTACCTAATTGTATGCATATGATTATGTTTTAAGAACCCTCACGTAATAATTTGTTGAGAAAGAATAACATGTTAATATTTGTTTGGTGAATATTATAACAGGTTAACATTCTTGAAATACTTTCTCTCCTTGATTTTAGAAGCTAAATGTTGCATTTACCAGTTCTTCTATATGCCAATGTGTTGCTTTGTGTTTGTGTTTCTTAAAAATGATACACGAGACAATTCTTAGATAGCTGAGAGTATGTTTATCATGCGGAGAGTAGCCCACTATCATAAAGAAGGGATCTTTATATCATGAAAGGAGTTGCATTAAGGTTTTTGCCTTTCTAGTTGTCAATATGTATCATTTAGGTTTTCATAAGACATCAGTTTGATGGATCTAAAATTTCATTAGTCAGTTATCCCAAAAAGATCAGTGGAATCTAGACGATGTACAGAGTTGTGATTAAAGGTGCTGCGATAAAGCAGTTTTTGTCTCACTTATTACTTTCTACAGATAATGTAGTCGTTTTGAGGAGCTGTGTGCCTTGATATCAGACCCTTGGAAAGACTATGTAAGATTAATTGTATAAGAGACTTTGAGGAACTTTCTATTTTTAACCGGACCATCGATAAGAGCAAGAATATATTTCTTTGTAGTTGATAGTTGATACTGATTTGGTTGCCACTGAAGAGTCACTCGTGTTGGTATGCTTCAAGATTAATTGCTAGTTATTAGTCTAGGAAGGTAATGTAGTCTAGGAGTACTAATAAAATGAACTTCTTTATTATGTACATAAAGTGATTGATTAGGGCTAAGTTACCTGAGGTCTCTCCACCCCCCCCCCCTCCCCAAAAGGGAAAGTTACTGTGTAGAAGACAATAGTTGTGAAGGACAAGGCGATCGGAAGTGTTAGAGATCTGTGCTTTTAGATGTCGAACAAATTAAGCTCAGACAGCCCTATCAATTGCTTTTAGGTCTTCAACATGCCCTACAAGCTAGCCTAAAGTGTGTTTAATTTCCTATATCTCTCTTCCTGTTCCCTTCTCGTTTTCACCTTTTCCCCCCTGTTTTGCTTGTCCCGGAAAATCTATTCTTCTTCGATTTGAATATGAAAGAGATCTTGACATTTTGGAATCATATGCATATGCATTTCTTTCTCCCAGAGATATAAGTCATGAATCTCTCTTATCCTTGCTCCTTTTCAGAAAGAAGTTACTTTTCCTAGTAAATTATTTCTAGTACGTAGAATGTTCTACTGCCCAAGAACTTTGAAATTATTCGTTGTTGACCACAATCTTGTTCTGCATTGGTGCTGCTTAGGTTTGAGAACTTGTTGAAACTGTTAGCTAGTTTATAGATAGATCACTAGCTACTTGTACCAACAAGCGTGTCGTCTATGTAAAACTTCATTATTCCTAATTATTCATTTGGTTAGTCTTCTAACTGTATTTCTCTACAAATTTTCAGCCAAAGAAAGCAGAAGAGAAGAAGCAATAGTCGAAGCTACTCACACCTAGCTTCTCATCGGGGCATTTTTTCAGCGTTAGATCAGCTATATGACATTCCAGAGAGATGAGTCTTCAACTAGGGGCAAAGCTAGTTTTTTGTGGCATTTATGTTAACAAGAACATTATATTTGTACTAGATGATGAATTTGCTATCCTTTTGTATTGTGAGACTTTGAAATGTCTTCCCAATCCTCA--T-TTC-TCCA---ATCCTTGCAAAAGAATAAAATTCCCTTCCAAAACGTTTGATCTCATTTTGGAATCGACTC-TAATACTCTTGTCTGAGAAGTAAACAGTGACTGGTATGTGCTTTTTTCTGGCAAAGCCATATTTGTTTCAAAGTAATTGAT</genome_strand>
        <mrna_strand>AGAAGATGTTGAAATTCTTGTCAAAGGTGAAAATCGAATTCAATGCCTTAGATCCACGCATAGCTTCATGTATGGAGTTTTTGGCTCAATGTAATGCTCCTAAAGCCAAAGAATCAAACCCAAGTTGCCAAGTTCAGGTCAAGCGCCGCACGGATGACCATCCACCGCAAATCTCTGTCACTTTCGTCAATGGAGTCGAGCAGACCTATGATGCAACTACTACACCGGCACAGAATATCCGTACCATGATTCTTGAAAAGGGTCAGTACCTTGAGACTGAACAGATGTTTCGTGAAGCTGGTGAGAAATGGCCTGTTATCATTCCTGATGAAGAGCTTAAACAACCATTTCTTGGAATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGAAAGCAGAAGAGAAGAAGCAATAATCAAAGCTACTCACACCTAGCTTCTCATCGGGGCATTTTCTCAGCGTTAGATCAGCTATATGACATTCCAGAGAGATGAATCTTCAAATAGGGGCAAAGCTAGCTTTTTGTTGCATTTATGTCAACAAGAATATTAGATTTGTACTAGATCATGAATTTGCTATCC-TTTGTATTGTGAGACTTTGAAGTGCCTTCCCAATCCTCATTTCTTCTTCCATTTATTCCTGCAAAAGAATAATATTTCCTTCCAAACGGTTTGATCTCATTTTGGAATTGACTCTTAATACTTCTGTCTTTGAAGTAAACA--G--TGGTATGTGC-ATTTTCTGGCAAAGATATATTTGTTTCAAAGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="42527" PGL_stop="43202"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42527" e_stop="43202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="42527" e_stop="43202" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42527" stop="43202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M39-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAGCAGCTTCTGCAGCAGCAAACGCAGCCTTCTCTTCCTCAGACATGGGAAAATTTTGTGTTTCCTCACTGGTATCATTTTGCCTTCCTACTGAAGCTTGAGAGGTTGACGGTTCAACAACTGGAATAGCTCCTATCGTGGCTGGCCTGACATTCAGCTTCTTGTTGTTGACACTAACAGCTAAGTGATTTCCAGCCGATGAAGAAACTTTAGAACTCCGTTTACTGTCTACTGCTGAAGGATGACTGCGGATAGGAGGTTTGCCAGGTGCTGCAATGTGTTTGCTCTTCGAAGTATCAGTGGCAGTGGATTGTCTTAGTAATTTCAGACCACCATTAGCAGCCTTCTCCTTTCGAAAAAGTTCTATCCATACATTGACAAGCTGACTTGCTACAGCACGTATGTCACGGCTAGTATGCACACAGACTTTTTCTTTAACCGTTTTCCCAATACCTGGATAAAATATGACAGGAATAGAATCAGTTAAATCAATGCAAGGACAAAGCAATACGCTAATGATATGACAATTATAAGGATCATTAGCCATTAATGGATATAGAAAGCAAATATTTTGAGTTTATAGCATACAAGCTGAAAAATATGAAACATTAACAGAGAATATTGATAGCCCCGATGGGGTTGTGCACATAAATAATTTGAAGGTACAAATCAGC</gDNA_template>
            <first_frame> A  S  S  F  C  S  S  K  R  S  L  L  F  L  R  H  G  K  I  L  C  F  L  T  G  I  I  L  P  S  Y  *  S  L  R  G  *  R  F  N  N  W  N  S  S  Y  R  G  W  P  D  I  Q  L  L  V  V  D  T  N  S  *  V  I  S  S  R  *  R  N  F  R  T  P  F  T  V  Y  C  *  R  M  T  A  D  R  R  F  A  R  C  C  N  V  F  A  L  R  S  I  S  G  S  G  L  S  *  *  F  Q  T  T  I  S  S  L  L  L  S  K  K  F  Y  P  Y  I  D  K  L  T  C  Y  S  T  Y  V  T  A  S  M  H  T  D  F  F  F  N  R  F  P  N  T  W  I  K  Y  D  R  N  R  I  S  *  I  N  A  R  T  K  Q  Y  A  N  D  M  T  I  I  R  I  I  S  H  *  W  I  *  K  A  N  I  L  S  L  *  H  T  S  *  K  I  *  N  I  N  R  E  Y  *  *  P  R  W  G  C  A  H  K  *  F  E  G  T  N  Q  </first_frame>
            <second_frame>  R  A  A  S  A  A  A  N  A  A  F  S  S  S  D  M  G  K  F  C  V  S  S  L  V  S  F  C  L  P  T  E  A  *  E  V  D  G  S  T  T  G  I  A  P  I  V  A  G  L  T  F  S  F  L  L  L  T  L  T  A  K  *  F  P  A  D  E  E  T  L  E  L  R  L  L  S  T  A  E  G  *  L  R  I  G  G  L  P  G  A  A  M  C  L  L  F  E  V  S  V  A  V  D  C  L  S  N  F  R  P  P  L  A  A  F  S  F  R  K  S  S  I  H  T  L  T  S  *  L  A  T  A  R  M  S  R  L  V  C  T  Q  T  F  S  L  T  V  F  P  I  P  G  *  N  M  T  G  I  E  S  V  K  S  M  Q  G  Q  S  N  T  L  M  I  *  Q  L  *  G  S  L  A  I  N  G  Y  R  K  Q  I  F  *  V  Y  S  I  Q  A  E  K  Y  E  T  L  T  E  N  I  D  S  P  D  G  V  V  H  I  N  N  L  K  V  Q  I  S </second_frame>
            <third_frame>   E  Q  L  L  Q  Q  Q  T  Q  P  S  L  P  Q  T  W  E  N  F  V  F  P  H  W  Y  H  F  A  F  L  L  K  L  E  R  L  T  V  Q  Q  L  E  *  L  L  S  W  L  A  *  H  S  A  S  C  C  *  H  *  Q  L  S  D  F  Q  P  M  K  K  L  *  N  S  V  Y  C  L  L  L  K  D  D  C  G  *  E  V  C  Q  V  L  Q  C  V  C  S  S  K  Y  Q  W  Q  W  I  V  L  V  I  S  D  H  H  *  Q  P  S  P  F  E  K  V  L  S  I  H  *  Q  A  D  L  L  Q  H  V  C  H  G  *  Y  A  H  R  L  F  L  *  P  F  S  Q  Y  L  D  K  I  *  Q  E  *  N  Q  L  N  Q  C  K  D  K  A  I  R  *  *  Y  D  N  Y  K  D  H  *  P  L  M  D  I  E  S  K  Y  F  E  F  I  A  Y  K  L  K  N  M  K  H  *  Q  R  I  L  I  A  P  M  G  L  C  T  *  I  I  *  R  Y  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0111P03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="45289" PGL_stop="44683"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45289" e_stop="44683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45289" e_stop="44683" e_length="607"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45289" stop="44683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M39-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGAAGCGCCAAGGTTTCCATGTCACCGTGCTCGAGGCCAGAAGTAGAATAGGTGGTCGTGTTTTTACAGATCGCTCGTCTCTATCTGTTCCAGTGGACCTTGGTGCTAGCATTATTACTGGTATTGAGGCAGATGTGGCGACTGAAAGAAGACCAGATCCTTCTTCGTTGATTTGTGCACAGTTGGGTCTTGAATTGACTGTATTGAACAGTGATTGTCCCCTGTACGATGTAGCTACTGGCCAGAAAGTACCAGTAGATCTGGATGAAGCATTGGAAGCAGAATTCAATAGCTTATTGGATGACATGGTACTGTTGGTTGCTCAAAAAGGGGAGCATGCGATGCGGATGTCCCTGGAGGATGGTTTGGAATATGCCCTTAAGAAGCGTCAGAAGGCCCGGTTTGCGAGAAATCATATGGGTAATGAATCACAAAAATTATCAGTGACAGCAGTGGAATCCATGGCACTTTCTGATGTCGGAGTTCCTCAAAATAATAATTCTAAGGTAGAGATCTTGAGCCCCCCAGAGAGGAGGGTAATGGATTGGCATTTTGCTAACTTGGAGTATGGTTGTGCTGCATTGCTTAAAGAAGTCTCTCTTCCT</gDNA_template>
            <first_frame> P  E  A  P  R  F  P  C  H  R  A  R  G  Q  K  *  N  R  W  S  C  F  Y  R  S  L  V  S  I  C  S  S  G  P  W  C  *  H  Y  Y  W  Y  *  G  R  C  G  D  *  K  K  T  R  S  F  F  V  D  L  C  T  V  G  S  *  I  D  C  I  E  Q  *  L  S  P  V  R  C  S  Y  W  P  E  S  T  S  R  S  G  *  S  I  G  S  R  I  Q  *  L  I  G  *  H  G  T  V  G  C  S  K  R  G  A  C  D  A  D  V  P  G  G  W  F  G  I  C  P  *  E  A  S  E  G  P  V  C  E  K  S  Y  G  *  *  I  T  K  I  I  S  D  S  S  G  I  H  G  T  F  *  C  R  S  S  S  K  *  *  F  *  G  R  D  L  E  P  P  R  E  E  G  N  G  L  A  F  C  *  L  G  V  W  L  C  C  I  A  *  R  S  L  S  S  </first_frame>
            <second_frame>  L  K  R  Q  G  F  H  V  T  V  L  E  A  R  S  R  I  G  G  R  V  F  T  D  R  S  S  L  S  V  P  V  D  L  G  A  S  I  I  T  G  I  E  A  D  V  A  T  E  R  R  P  D  P  S  S  L  I  C  A  Q  L  G  L  E  L  T  V  L  N  S  D  C  P  L  Y  D  V  A  T  G  Q  K  V  P  V  D  L  D  E  A  L  E  A  E  F  N  S  L  L  D  D  M  V  L  L  V  A  Q  K  G  E  H  A  M  R  M  S  L  E  D  G  L  E  Y  A  L  K  K  R  Q  K  A  R  F  A  R  N  H  M  G  N  E  S  Q  K  L  S  V  T  A  V  E  S  M  A  L  S  D  V  G  V  P  Q  N  N  N  S  K  V  E  I  L  S  P  P  E  R  R  V  M  D  W  H  F  A  N  L  E  Y  G  C  A  A  L  L  K  E  V  S  L  P </second_frame>
            <third_frame>   *  S  A  K  V  S  M  S  P  C  S  R  P  E  V  E  *  V  V  V  F  L  Q  I  A  R  L  Y  L  F  Q  W  T  L  V  L  A  L  L  L  V  L  R  Q  M  W  R  L  K  E  D  Q  I  L  L  R  *  F  V  H  S  W  V  L  N  *  L  Y  *  T  V  I  V  P  C  T  M  *  L  L  A  R  K  Y  Q  *  I  W  M  K  H  W  K  Q  N  S  I  A  Y  W  M  T  W  Y  C  W  L  L  K  K  G  S  M  R  C  G  C  P  W  R  M  V  W  N  M  P  L  R  S  V  R  R  P  G  L  R  E  I  I  W  V  M  N  H  K  N  Y  Q  *  Q  Q  W  N  P  W  H  F  L  M  S  E  F  L  K  I  I  I  L  R  *  R  S  *  A  P  Q  R  G  G  *  W  I  G  I  L  L  T  W  S  M  V  V  L  H  C  L  K  K  S  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45288" stop="44683"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKRQGFHVTVLEARSRIGGRVFTDRSSLSVPVDLGASIITGIEADVATERRPDPSSLICAQLGLELTVLNSDCPLYDVATGQKVPVDLDEALEAEFNSLLDDMVLLVAQKGEHAMRMSLEDGLEYALKKRQKARFARNHMGNESQKLSVTAVESMALSDVGVPQNNNSKVEILSPPERRVMDWHFANLEYGCAALLKEVSLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="77795" PGL_stop="78137"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77795" e_stop="78137"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77795" e_stop="78137" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77795" stop="78137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6761" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTTTGCAGGCGCCTCCCTTATCGTGCTTGGAGTTATTGTTTTGAGCAAGTCAAGCATAGAGAAGAAAACTCATACAAGTTAAATTTAGAGAAGGTGTGAGCCAAATATCAGATGTAGATTTTAATGGCCTTAACATGAACTACTGTTAAATTCATGTCTCAGAATCAGTTTATTTTGCACTATTGTGGCTGTTGATATAATTGTTGCTCTTGTAATATTCCAATACTGGGACTCTCTCCATGTTGTACGACTCTACGTGATCGTGATGTCACTGATGAAATTACGTTGAATATGTCATTGTTAGTACTTAGTCCTAATATCTATTTGAGGACTGCTTTAAA</gDNA_template>
            <first_frame> W  F  A  G  A  S  L  I  V  L  G  V  I  V  L  S  K  S  S  I  E  K  K  T  H  T  S  *  I  *  R  R  C  E  P  N  I  R  C  R  F  *  W  P  *  H  E  L  L  L  N  S  C  L  R  I  S  L  F  C  T  I  V  A  V  D  I  I  V  A  L  V  I  F  Q  Y  W  D  S  L  H  V  V  R  L  Y  V  I  V  M  S  L  M  K  L  R  *  I  C  H  C  *  Y  L  V  L  I  S  I  *  G  L  L  *  </first_frame>
            <second_frame>  G  L  Q  A  P  P  L  S  C  L  E  L  L  F  *  A  S  Q  A  *  R  R  K  L  I  Q  V  K  F  R  E  G  V  S  Q  I  S  D  V  D  F  N  G  L  N  M  N  Y  C  *  I  H  V  S  E  S  V  Y  F  A  L  L  W  L  L  I  *  L  L  L  L  *  Y  S  N  T  G  T  L  S  M  L  Y  D  S  T  *  S  *  C  H  *  *  N  Y  V  E  Y  V  I  V  S  T  *  S  *  Y  L  F  E  D  C  F  K </second_frame>
            <third_frame>   V  C  R  R  L  P  Y  R  A  W  S  Y  C  F  E  Q  V  K  H  R  E  E  N  S  Y  K  L  N  L  E  K  V  *  A  K  Y  Q  M  *  I  L  M  A  L  T  *  T  T  V  K  F  M  S  Q  N  Q  F  I  L  H  Y  C  G  C  *  Y  N  C  C  S  C  N  I  P  I  L  G  L  S  P  C  C  T  T  L  R  D  R  D  V  T  D  E  I  T  L  N  M  S  L  L  V  L  S  P  N  I  Y  L  R  T  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0111P03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="99032" PGL_stop="101515"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99032" e_stop="99042"/>
            <exon e_start="99178" e_stop="99302"/>
            <exon e_start="100337" e_stop="100418"/>
            <exon e_start="100867" e_stop="100989"/>
            <exon e_start="101077" e_stop="101130"/>
            <exon e_start="101218" e_stop="101287"/>
            <exon e_start="101501" e_stop="101515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.570" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99032" e_stop="99042" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99043" i_stop="99177" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99178" e_stop="99302" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="99303" i_stop="100336" i_length="1034"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100337" e_stop="100418" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.928">
            <gDNA_intron_boundary i_start="100419" i_stop="100866" i_length="448"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100867" e_stop="100989" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.954">
            <gDNA_intron_boundary i_start="100990" i_stop="101076" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="101077" e_stop="101130" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.570">
            <gDNA_intron_boundary i_start="101131" i_stop="101217" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101218" e_stop="101287" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="101288" i_stop="101500" i_length="213"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="101501" e_stop="101515" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99032" stop="99042"/>
              <exon start="99178" stop="99302"/>
              <exon start="100337" stop="100418"/>
              <exon start="100867" stop="100989"/>
              <exon start="101077" stop="101130"/>
              <exon start="101218" stop="101287"/>
              <exon start="101501" stop="101515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTATGGGAG : GCTTGGTCATCGAGAACAGAAGGACGAGTTTGCTCCTCGACGAGTTGATGTTTTTACACGGCAGAATGTCTTGCCTCCAGATGCAATAGTTTCAGCAGGTTCTGCCAGCTCATCATGTACTGCCG : GAGGAGGGCAGCTTTACATGTGGGGAAAAATTAAGAGCACAGGAGATGATTCGATGTATCCCAAACCTCTTCTGGATTTGAG : TGGGTGGAACCTCCGATGTATGGATTCTGGCTATATGCACCACTTTGTTGGTGCTGATTCCTCTTGCATAAGTTGGGGCCTTGCACAGTGTGGGGAGCTGGGTTATGGACCACATGGACAGAA : ATCTTCTGCAGTTCCTAAGAAGGTGGACATTTTAGATGGCATGCATGTTATCAG : TGTTGCTTGTGGATTTGCCCACTCCATGGTTGTTATTGATAGGACAAATGTTGAGGATCGACTTGAGCAG : CTTGATGTATATGAT</gDNA_template>
            <first_frame> G  Y  G  R :   L  G  H  R  E  Q  K  D  E  F  A  P  R  R  V  D  V  F  T  R  Q  N  V  L  P  P  D  A  I  V  S  A  G  S  A  S  S  S  C  T  A   : G  G  G  Q  L  Y  M  W  G  K  I  K  S  T  G  D  D  S  M  Y  P  K  P  L  L  D  L  S :   G  W  N  L  R  C  M  D  S  G  Y  M  H  H  F  V  G  A  D  S  S  C  I  S  W  G  L  A  Q  C  G  E  L  G  Y  G  P  H  G  Q  K :   S  S  A  V  P  K  K  V  D  I  L  D  G  M  H  V  I  S :   V  A  C  G  F  A  H  S  M  V  V  I  D  R  T  N  V  E  D  R  L  E  Q  :  L  D  V  Y  D </first_frame>
            <second_frame>  V  M  G   : G  L  V  I  E  N  R  R  T  S  L  L  L  D  E  L  M  F  L  H  G  R  M  S  C  L  Q  M  Q  *  F  Q  Q  V  L  P  A  H  H  V  L  P  :  E  E  G  S  F  T  C  G  E  K  L  R  A  Q  E  M  I  R  C  I  P  N  L  F  W  I  *   : V  G  G  T  S  D  V  W  I  L  A  I  C  T  T  L  L  V  L  I  P  L  A  *  V  G  A  L  H  S  V  G  S  W  V  M  D  H  M  D  R   : N  L  L  Q  F  L  R  R  W  T  F  *  M  A  C  M  L  S   : V  L  L  V  D  L  P  T  P  W  L  L  L  I  G  Q  M  L  R  I  D  L  S  S :   L  M  Y  M   </second_frame>
            <third_frame>   L  W  E  :  A  W  S  S  R  T  E  G  R  V  C  S  S  T  S  *  C  F  Y  T  A  E  C  L  A  S  R  C  N  S  F  S  R  F  C  Q  L  I  M  Y  C  R :   R  R  A  A  L  H  V  G  K  N  *  E  H  R  R  *  F  D  V  S  Q  T  S  S  G  F  E  :  W  V  E  P  P  M  Y  G  F  W  L  Y  A  P  L  C  W  C  *  F  L  L  H  K  L  G  P  C  T  V  W  G  A  G  L  W  T  T  W  T  E  :  I  F  C  S  S  *  E  G  G  H  F  R  W  H  A  C  Y  Q  :  C  C  L  W  I  C  P  L  H  G  C  Y  *  *  D  K  C  *  G  S  T  *  A   : A  *  C  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99032" stop="99042"/>
                    <exon start="99178" stop="99302"/>
                    <exon start="100337" stop="100418"/>
                    <exon start="100867" stop="100989"/>
                    <exon start="101077" stop="101130"/>
                    <exon start="101218" stop="101287"/>
                    <exon start="101501" stop="101515"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYGRLGHREQKDEFAPRRVDVFTRQNVLPPDAIVSAGSASSSCTAGGGQLYMWGKIKSTGDDSMYPKPLLDLSGWNLRCMDSGYMHHFVGADSSCISWGLAQCGELGYGPHGQKSSAVPKKVDILDGMHVISVACGFAHSMVVIDRTNVEDRLEQLDVYD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="115694" PGL_stop="118648"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115694" e_stop="116055"/>
            <exon e_start="118264" e_stop="118648"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.967"/>
          <exon-only e_score="0.862"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="115694" e_stop="116055" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="116056" i_stop="118263" i_length="2208"/>
          </intron>
          <exon e_serial="2" e_score="0.862">
            <gDNA_exon_boundary e_start="118264" e_stop="118648" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115694" stop="116055"/>
              <exon start="118264" stop="118648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8902" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAATGTTGAAATTCTTGTCAAAAGTGAAAATCGAATTCAATGCCTTAGATCCACGAATAGCTTCATGTATGGAATTTTTGGCTCAATGTAATGCTCCTAAAGCCAAAGAATCAAACCCAAGTTGCCAAATTCAGGTCAAGCGCCGCACTGATGACCATCCACCGCAAATCTCTGTCACTTTCGTCAATGGAGTCGAGCAGACCTATGATGCTACTTCTACACCCGCACAGAACATCCGTACTATGATTCTTGAAAAGGGTCAGTACCTTGAGACTGAACAGATGTTTCGTGAAGCTGGTGAGAAATGGCCTGTTATTATTCCTGATGAAGAGCTTAAACAACCATTTCTTGGAATAAAG : CCAAAGAAAGCAGAAGAGAAGAAGCAATAGTCGAAGCTACTCACACCTAGCTTCTCATCGGGGCATTTTTTCAGCGTTAGATCAGCTATATGACATTCCAGAGAGATGAGTCTTCAACTAGGGGCAAAGCTAGTTTTTTGTGGCATTTATGTTAACAAGAACATTATATTTGTACTAGATGATGAATTTGCTATCCTTTTGTATTGTGAGACTTTGAAATGTCTTCCCAATCCTCATTTCTCCAATCCTTGCAAAAGAATAAAATTCCCTTCCAAAACGTTTGATCTCATTTTGGAATCGACTCTAATACTCTTGTCTGAGAAGTAAACAGTGACTGGTATGTGCTTTTTTCTGGCAAAGCCATATTTGTTTCAAAGTAATTGAT</gDNA_template>
            <first_frame> R  K  C  *  N  S  C  Q  K  *  K  S  N  S  M  P  *  I  H  E  *  L  H  V  W  N  F  W  L  N  V  M  L  L  K  P  K  N  Q  T  Q  V  A  K  F  R  S  S  A  A  L  M  T  I  H  R  K  S  L  S  L  S  S  M  E  S  S  R  P  M  M  L  L  L  H  P  H  R  T  S  V  L  *  F  L  K  R  V  S  T  L  R  L  N  R  C  F  V  K  L  V  R  N  G  L  L  L  F  L  M  K  S  L  N  N  H  F  L  E  *  S :   Q  R  K  Q  K  R  R  S  N  S  R  S  Y  S  H  L  A  S  H  R  G  I  F  S  A  L  D  Q  L  Y  D  I  P  E  R  *  V  F  N  *  G  Q  S  *  F  F  V  A  F  M  L  T  R  T  L  Y  L  Y  *  M  M  N  L  L  S  F  C  I  V  R  L  *  N  V  F  P  I  L  I  S  P  I  L  A  K  E  *  N  S  L  P  K  R  L  I  S  F  W  N  R  L  *  Y  S  C  L  R  S  K  Q  *  L  V  C  A  F  F  W  Q  S  H  I  C  F  K  V  I  D </first_frame>
            <second_frame>  E  N  V  E  I  L  V  K  S  E  N  R  I  Q  C  L  R  S  T  N  S  F  M  Y  G  I  F  G  S  M  *  C  S  *  S  Q  R  I  K  P  K  L  P  N  S  G  Q  A  P  H  *  *  P  S  T  A  N  L  C  H  F  R  Q  W  S  R  A  D  L  *  C  Y  F  Y  T  R  T  E  H  P  Y  Y  D  S  *  K  G  S  V  P  *  D  *  T  D  V  S  *  S  W  *  E  M  A  C  Y  Y  S  *  *  R  A  *  T  T  I  S  W  N  K   : A  K  E  S  R  R  E  E  A  I  V  E  A  T  H  T  *  L  L  I  G  A  F  F  Q  R  *  I  S  Y  M  T  F  Q  R  D  E  S  S  T  R  G  K  A  S  F  L  W  H  L  C  *  Q  E  H  Y  I  C  T  R  *  *  I  C  Y  P  F  V  L  *  D  F  E  M  S  S  Q  S  S  F  L  Q  S  L  Q  K  N  K  I  P  F  Q  N  V  *  S  H  F  G  I  D  S  N  T  L  V  *  E  V  N  S  D  W  Y  V  L  F  S  G  K  A  I  F  V  S  K  *  L   </second_frame>
            <third_frame>   K  M  L  K  F  L  S  K  V  K  I  E  F  N  A  L  D  P  R  I  A  S  C  M  E  F  L  A  Q  C  N  A  P  K  A  K  E  S  N  P  S  C  Q  I  Q  V  K  R  R  T  D  D  H  P  P  Q  I  S  V  T  F  V  N  G  V  E  Q  T  Y  D  A  T  S  T  P  A  Q  N  I  R  T  M  I  L  E  K  G  Q  Y  L  E  T  E  Q  M  F  R  E  A  G  E  K  W  P  V  I  I  P  D  E  E  L  K  Q  P  F  L  G  I  K  :  P  K  K  A  E  E  K  K  Q  *  S  K  L  L  T  P  S  F  S  S  G  H  F  F  S  V  R  S  A  I  *  H  S  R  E  M  S  L  Q  L  G  A  K  L  V  F  C  G  I  Y  V  N  K  N  I  I  F  V  L  D  D  E  F  A  I  L  L  Y  C  E  T  L  K  C  L  P  N  P  H  F  S  N  P  C  K  R  I  K  F  P  S  K  T  F  D  L  I  L  E  S  T  L  I  L  L  S  E  K  *  T  V  T  G  M  C  F  F  L  A  K  P  Y  L  F  Q  S  N  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115696" stop="116055"/>
                    <exon start="118264" stop="118293"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMLKFLSKVKIEFNALDPRIASCMEFLAQCNAPKAKESNPSCQIQVKRRTDDHPPQISVTFVNGVEQTYDATSTPAQNIRTMILEKGQYLETEQMFREAGEKWPVIIPDEELKQPFLGIKPKKAEEKKQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118357" stop="118590"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSREMSLQLGAKLVFCGIYVNKNIIFVLDDEFAILLYCETLKCLPNPHFSNPCKRIKFPSKTFDLILESTLILLSEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 9144 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 1828 bytes was the average size of a spliced alignment
$ 10456 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2091 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 9 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 05:09:14
-->
