<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-17 21:40:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E269369" ref_strand="+" ref_description="SGN-E269369 [cLEM-18-F15]">
      <seq>ttttatgtcttgaaaaagttgggatgggctaggagtttatctgctggtgaatcatactggactaacgagttctctttctttaaagtggcgattgatttgactgatgctggtcaagatcattttgaagacattatgggtctgctatgcaaatatattcatcttctacaacaagctggtgcgtccaaatggatatttgaagagctctcaactatttgtgagactgccttccattatcaagacaagattcgaccaagtgattatgtggttaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="1524" stop="5284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1824" g_stop="1845" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1846" i_stop="2519" i_length="674">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2520" g_stop="2612" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="115" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2613" i_stop="2762" i_length="150">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2763" g_stop="2848" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="201" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2849" i_stop="4913" i_length="2065">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.643" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4914" g_stop="4984" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="272" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E269369" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1824" e_stop="1845"/>
          <exon e_start="2520" e_stop="2612"/>
          <exon e_start="2763" e_stop="2848"/>
          <exon e_start="4914" e_stop="4984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATGTCTTGAAAAAGTTGGGTGGGTTCTCAATTAATTATTTTATGCCCTTCTCTACCCTATCTGTACATCATTCATTTCCTGGCTTCAACTCATACTTCCCCATTCTTGAAATTTGTATAGACGAATGGTGATATTATCGTATAAATTTGTCACATCCTTTTATTGACCCATAGCATGTTTGAAATATTAGGATCCCCTAGGCAGCATCCTTGAGGCGGAATCTCTTCTGTCCAAGAAAATACCCACAGTAGAAGTTCTAATTTAGATAATAAGTTTCGTCTGCCACTTTGCAAACATGATAACATCCTGTACACTAACAACTTTATCTCATTTTTGAGTTGCTACATGTGTTCCTACTTGCTTGAAGTCAATGTTAAGTCCTTCATTTTTACTTATTACAACCAACTATCTAATTTAGGACAATTGTGAGCGAACATGTCTATAACAGTTCATGGGAATCATTTTTATCTGATCAAGGAATGATAAGATGTGGTTTCACATAGCCGGAATGATGAAATCAATGTGTTTGTTAAGATGCTTTAATGCCATATTATTTTGTGACTTCAGTCAATTTTTTTTGGATCTTGCATTGGTTACATGGCATCCTTGTTAATGCTACTATAGTTCTTCAAGTACTTTTCTCAAACTAATATTTTAATATCCAGAAAGGTACTTATATTTGGTTGTTACAGGATGGGCTACAAGTTTATCTGCTGGTGAATCAGACTGGACTAACGAGTTCTCTTTCTTTAAAGTGGCGATTGATTTGACTGATGCTGGTCAAGGTACTTGTTTTCTGTGTTGAACCTTAATATGTTACCAAGCCCCTATTTTCCCTTCCACTAATAGTAGTTTTTCTTTAATGAAGCTGAATGTGCGAACTTTCCTGAACTTTATGCGGGATATTGATGTTTATGACCATTTTTTATTTCCAGATCATTTTGAAGACATTATGGGTCTCCTATTCAAATATATTCATCTTCTACAACAAGCTGGTGCGTCCAAATGGATATTTGAAGAGGTATAATCAATTGCATCCTCATGCATGCCAGCCAATGCCACTAATTTTTCATGACTGTAGTATATGTCATTTGCATCTACTAACACCAATGATGTGTATTCTAATAGATGATTTGATGAATAGGTTTTGACCTTACATACATTTAGTGTATAAGAATCCTTAATTTGAAAAGAACTATAACAACATACCTGTGTAATCCTCCAAAACTGGGGTCTGGGGGAGGGTAGAGTGTACGTAGAACTTACCCCCTACCTTGGAGGTTGAGTGGTTGTCTCCGATTAATCCTCAAGGAAAAACTTTTAAAGCAGGTTGGAAAAAGAAATACCGGAAGTGAAGTAGCCATAGCAAAATACTTAGAAAGCATGACAAAACATTCTGAATACATAGAATAATAACTACAAAATTATATATAATCAAAGTAGGGGGAACTACAACGAATAAAACTGCGCCTACTAGTTTGGAAGGATAAGCAAGACAATGCTCTACTACCTTCTAATCTTTTGCCCTAATTTGTGTCCTCCACAACCTCCTATAAGAGGTCATGTCATTCAAGAAGCTAAAAGTGCACTATCTCCTATCGAATCATCTCACTTCTCCTGACACCATCCATGGACAATCTCTCATACCTCTTCATTAGGGCATCCGTGTGGATCTTTTCACATGTCTGAGCCATCTCAGTCTCGCTTTTCGTATCTTATCCTCCACCTAGACCACTCTCACCTTGTTCCGAATATCTTCATTTTTAATCCTATTTCTCCTAGTATGTCCACACATCCATCGCAACATCCATATTTCTGCAATTTTCATCTTCTAAACTTGAGAGTTTTGGCCTCTTCTTGACTAGCCGACACTCTGCTCCATACAACATAGTAGGTCTAAGCACCACTCTGTAGATCTTGCCTTCAAGTTTTGGTGACACATTCTTATCACACAAGAGTCTAGATGCGAGCCTCCATTTCATCCACTCAACATCAATACGAAGATAGACATCATCGTCAATACCCATCAATTTGAAAGAATTTTTTTTTCAGTTGTGAAAATGTTTAAAGAGTACTTAAAGCTCCGTAGGGAAATGACTATTGAAATTTAGAGAGGAGGTCACGCCATATGGATAGAGGTAGTAGTAGAGTAGATAAGTGTGGCAATTTGTAAAGCCTTACTAGCACACAGATCCGCTGATGCGCTGGAACAAAACCGAACTCCAACAAATCTATAAGAAGTCTGAGAATGCATAACTTCACTGTACCGATCTGCCATCTCATTTCACTGCACCCTTTTCTTGAAAAACCGTTGATCAAGAGGAAGGAAAGATTCTCTGGACCACCTTGGTCCTTCTAGTACATTCTTTGACTTTTTCCTGGATGGTAATCGAAAACAAGCCGAGAATCTCTGAAGCAAAGATGTTTAACTACTGCTGTACCCTTTACTATCTTCTTTGCCCATCTCCCCACTATTTCTGGCTGCTCGATTGGTTGGTCAAATCACACAACCTGACAGGTTCCAAAAATGGTTCTACGCCTCTCTATATTTTCTTGCAAGAAACAGAAAATATCAACTCCCAGCTCATATTTTTTACTTTGTACCCGTCATCTGATGTGAGCACACTGCACAGGCCGTGGAACCACATCTCTGTGCACAGGCCATGGAACCACATCACTGTAGGATCTCATTCTTACTATCTTTTTCTTCATTTGAAGTTCTTAAAATTTTTACGTTTCTAGTCTAGTTTAGAAGCAAACTAGATTTTTTGTAGTTGGATTTCTAAAGAGAAGGAAGAGGAAGTTATTCTAAAAGGAGGTCATAATGGGTTGGTCCCAGAAAGGAATAGTGTTACATTACATGTGCACTATTCTACATTTTATCAATAAGATTAGGGTCAATCATCCAATCCTATTTTTGTAAGTTCCCTTTGTTCATCTTGGCATGTAATATGACCAGGTTTTGTCCTGGCCTTCTTTTTCTTGTTGTCTCTTATGCATTATTGTTCTTAATGATCTCACTTCCTTCTTATTCCTTTTTTTTTTTTAGTTATTCTAATTTTTTTTGGTTAAAATTTTTTCATAAGCTCTCAGCTATTTGTGAGACTGCCTTCCATTATCAAGACAAGATTCGACCAAGTGATTATGTGGTTAATGT</genome_strand>
        <mrna_strand>TTTTATGTCTTGAAAAAGTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGCTAGGAGTTTATCTGCTGGTGAATCATACTGGACTAACGAGTTCTCTTTCTTTAAAGTGGCGATTGATTTGACTGATGCTGGTCAAG......................................................................................................................................................ATCATTTTGAAGACATTATGGGTCTGCTATGCAAATATATTCATCTTCTACAACAAGCTGGTGCGTCCAAATGGATATTTGAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCAACTATTTGTGAGACTGCCTTCCATTATCAAGACAAGATTCGACCAAGTGATTATGTGGTTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E704163" ref_strand="+" ref_description="SGN-E704163 [FA23CB01]">
      <seq>caaagtttgagggtaatactagcatgactgagccatggtatggaactgcatattctatagagaaagttggtggtgacagtatcaagcaatggatggagcatgctcccagtgaagagctgcatctccctgctcccaatgtgttcataccaactgatttatcacttaagcccgtcttcgagaagacaaaagttcccatacttctgcggaagtcaccttattcaaggttatggtataagcccgatacagcattttcatctccaaaagcctatgttatgatcgatttcagttgcccatactgtggacattctccagaagctgaggttcttactgagatatttacacgtctattgatggattacttgaatgaatatgcttataatgcacaagttgctggtctttattatgatataagcaaaacaaacagtggttttcagttgacattgtttggatataatgacaagttgagagtcttactggaagcagtcattgaaaaagttgcgaaatttgaagtaaaaccagacagattctctgtggtcaaggaattggtgacaaagcaatatcagaatttcaagttccaacagccatatcaacaggttatgtattactgctcattactgctaaaagacaacatatggccttggaatgaagaacttgaagtgcttccacatcttaaagttgatgatctggttaagttctatccgcttttgatggctaggtcctttatggagtgctatgtagcaggaaatgttgaacaagctgaagcagagtccatgatacagcttattgaagatgtgttcttcaagggtccacagtccatatcaaagcctctatttgcatctcagcatctgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="6581" stop="10977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6881" g_stop="6966" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6967" i_stop="7079" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7080" g_stop="7175" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="182" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7176" i_stop="7439" i_length="264">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.421" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7440" g_stop="7629" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="372" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7630" i_stop="7826" i_length="197">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7827" g_stop="7888" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="434" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7889" i_stop="8414" i_length="526">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8415" g_stop="8519" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="539" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8520" i_stop="10290" i_length="1771">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10291" g_stop="10492" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="741" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10493" i_stop="10567" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10568" g_stop="10677" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="851" r_length="110" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E704163" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6881" e_stop="6966"/>
          <exon e_start="7080" e_stop="7175"/>
          <exon e_start="7440" e_stop="7629"/>
          <exon e_start="7827" e_stop="7888"/>
          <exon e_start="8415" e_stop="8519"/>
          <exon e_start="10291" e_stop="10492"/>
          <exon e_start="10568" e_stop="10677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTTGAGGGTAATACTAGCATGACTGAGCCATGGTATGGAACTGCATATTCTATAGAGAAAGTTGGTGGTGACAGTATCAAGGTTTGATGGAAGCACTCTCTCATTAAATTAGTATTCATTTGTTATATTCTAATTGCAGAGACCGAAATTGTCTCCTTTTTAAACATTTGCTGACATAACAATTAATTTTGCAGCAATGGATGGAGCATGCTCCCAGTGAAGAGCTGCATCTCCCTGCTCCCAATGTGTTCATACCAACTGATTTATCACTTAAGCCCGTCTTCGAGAAGGTGCTAATGTTGAACTTATTTATTCCTTCGAGTGTTCCATTTTATATCAAACGATTTCTTTTTGTCTCTTTTCCAAAAATAATAATACCTTTTCATATTTGGATACTCTTCAATTTTATACATCCCATTTTGCTCCTAATGTTGTTTTCTTTTAGCTATAGAAATATCATGGCACAGTTAAACCATTTTAAATTTTAATGACACTTGATGGAGGGAGTATAGTTCTGATGTCTTGGCTTTTCTTATATATAATTTGTCGAGCAGACAAAAGTTCCCATACTTCTGCGGAAGTCACCTTATTCAAGGTTATGGTATAAGCCCGATACAGCATTTTCATCTCCAAAAGCCTATGTTATGATCGATTTCAGTTGCCCATACTGTGGACATTCTCCAGAAGCTGAGGTTCTTACTGAGATATTTACACGTCTATTGATGGATTACTTGAATGAATATGGTACGTCTGCAAGATATTGACTAGTTATGACTTATGCACTGCTGGGCGACTGTTCTACAATTACTCTGGACTTAACTTCTTAATGTTAATATTATTATTCATCAACTTCTTCACACTTCCAATATAGTCTTAGCAATTTCTTTTTTTTTCCCGTAAAATATAACACTTCTTTAAATATCTTCCTTTGCATCTTTCAGCTTATAATGCACAAGTTGCTGGTCTTTATTATGATATAAGCAAAACAAACAGTGGTTTTCAGGTGATCATCTTGTTTCCTATCTCTATCTTTTTAAATTTTTGAAGAGATTTATTTATTTGGGGGTGTGTAACCTTTTTCTCTGTTTTAAGTTTAGTTCTTCCATGCACTGTGAATACTCGCTACATCCATTAAACCCATACTTGTTTAATGAAATAGTTGCTACATCCATTAAACCACAGTATTAGTATCTGGGCACCATGTTTCTCTAAGGTTTTAGTTTTAAAGTGTTGATATGTCATTTGGTAGGGGAAGTCCCAGATCCAACATCGAAGGATTTTAGGTTCTTGTCTGTACTGAATACTAAATCCTAATGTTAATTGTTAATGTTGTTAGGCTTCTTTTAGCTGGCTCAAAGCTATTTAATCTTTTTATGTCATTTAAGAATGAACTAGCTGCTTCATCCTGTCTTCTTGAAGTGGATTGATATTGCTACTTCAATGGCTGTTTAGTTTCTTGCATTTCCTGCTACCTGAATATGACTATGCATTGTTCATTTATTCCCCTGTTCTTCCTCTCTTTTCTGCAGTTGACATTGTTTGGATATAATGACAAGTTGAGAGTCTTACTGGAAGCAGTCATTGAAAAAGTTGCGAAATTTGAAGTAAAACCAGACAGATTCTCTGTGGTCAAGGTGAGCATCAGCAATTTTTTGCTGCTTATCGATACATCAACTATTTAGACTCTCCAAGAATGCATCATACTCTATATGAATCTCATTGAGGCAAAAAGGTTACTCTCTGGCAAGTGGCTTTAAAATAATGGATCCTATTATGCCATAGTCTTGGCTATATGAACAACTATAACTTTAGCGGATAACTATAAGAAAATTCTAAGATTCATTTTCTCAACAATGTTTTGAAGTTCACAGATAAATTTTCCGAACCAATTCCTCATGCAAGCAATGTCGGACTTCTTCATTTTAAGTTCCCAATTTCACTCTCTTTCTTCCCCTTTTGTCAAAGTATTGTTAGAGTTGCAGTCAGGCACTTATGACTTCATTTTGTGTTTTGAAGAGCAAGTTTGTTGTCAAATCTATCGGTTATTTTGCATCTGTATGCTCTGCTTTTAGGTACTTTTGTATGCATCAACATGTCTGCCAGCTATCTCTAGCTTTAGTTTGCAGTTGTCTTCACTGTACCATCTTATTACTAATGATTCGTGATTACTTATTCTTGATGTGTCATACTCAAGTTTTTTCGTCACCTCATACCAGAATGTTGTGTTGAAAGATCAGTCGCTTCTTTCCTGTTGCTTAATATGTTCTTATGAGGTTACAAAAGACATAACACCTGTAAGTAGTGGAGATCAACTGTGTGGACTTGTAAATTTCCTTGTTCCATGTACGCACTAATGCACACAGACACATACATATACAATTATAGCAGTCTAGCAGACTAGCACAATTAAATTAAAGTCAGATGGCCAAAATGGACCCATAGGAGTATAAGAAATCAGCTACATAATTAAAAAGAGTTCCTCATGATAAGGAGTCTCATTAAATATTTGAATCCCATCCTTGTGGTATTCTCCATTGATTTTTAAGACCTCCATTCACAATAATGATGTGCTTTTGACCTGTTAAGTTTGAATAATTATTATATGAACTTGCTAGACAATTGTTCAAAATAATAGTTTATAAAAAGGTTGAACAATTTGTAGAAAAGATGCCACCCCAAGCTTGAAATAATATGGACTATTTTTTGGAGTAGTTCAGTTTTCCCTGTATGAACCAAAAAAGTGAAGTAGGCCAATTTTATTGGGATTGAAGGAGTAACATACAAATTTCTCTAGGTAACTCCATTATTTGTTCCTTCAGTTCTTCATGATTTTGTCGTTCAGTGTAATTCAAACGAAACAAATAGGATATTATACTAGTCACTTTTTAAATTTTTTTATAGGTTGAACAATTTGTAAAAAAGATGCCATCTCAAGCTTGAAATAATATTTTTGGAGTAGTTCAGTTTTCCCTGTATGAACCAAAAAAGTGAAGTAGGTCAATTTTATTGGGATTGAAGGAGTAACATACAAATTTTTCTAGGTAACTCCATTATCTTCCTTCTTTTGTTCCTTCAGTTCTTCTAATGATTTTGTCGTTCAGTGTAATTCAAACAAAACAAATAGGATGTTATATTAGTCACTTTTTAAATTTTTTTATTTTGGGTCCATTTTGTAAGAATTTACTCTTGGTCATCTGGATGTGAGAAGTTTGTGTCACCATTACCTGCAATGTTGGTTTTCTATTGCGACGTTGGCAAGCCTTCTAAGTTTTTTTTTTATCTTTTTTGGTCCATTATTAACTCATGAATTTTACTGATATTTCTCTTTATTTCCTCCTTTTCTATTTTCTAATCAAGAGCATAACCACCATTCTTTTTTTCTTGTTGATCTCCTTTTATTAATAGGAATTGGTGACAAAGCAATATCAGAATTTCAAGTTCCAACAGCCATATCAACAGGTTATGTATTACTGCTCATTACTGCTAAAAGACAACATATGGCCTTGGAATGAAGAACTTGAAGTGCTTCCACATCTTAAAGTTGATGATCTGGTTAAGTTCTATCCGCTTTTGATGGCTAGGTCCTTTATGGAGTGCTATGTAGCAGGTTACTTTTCTCAACAGCCATTTAAGTTGTTTCATTTTACATCTATTAACTTGTGAAATCCACTGCCTTTCTCAGGAAATGTTGAACAAGCTGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACA</genome_strand>
        <mrna_strand>CAAAGTTTGAGGGTAATACTAGCATGACTGAGCCATGGTATGGAACTGCATATTCTATAGAGAAAGTTGGTGGTGACAGTATCAAG.................................................................................................................CAATGGATGGAGCATGCTCCCAGTGAAGAGCTGCATCTCCCTGCTCCCAATGTGTTCATACCAACTGATTTATCACTTAAGCCCGTCTTCGAGAAG........................................................................................................................................................................................................................................................................ACAAAAGTTCCCATACTTCTGCGGAAGTCACCTTATTCAAGGTTATGGTATAAGCCCGATACAGCATTTTCATCTCCAAAAGCCTATGTTATGATCGATTTCAGTTGCCCATACTGTGGACATTCTCCAGAAGCTGAGGTTCTTACTGAGATATTTACACGTCTATTGATGGATTACTTGAATGAATATG.....................................................................................................................................................................................................CTTATAATGCACAAGTTGCTGGTCTTTATTATGATATAAGCAAAACAAACAGTGGTTTTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACATTGTTTGGATATAATGACAAGTTGAGAGTCTTACTGGAAGCAGTCATTGAAAAAGTTGCGAAATTTGAAGTAAAACCAGACAGATTCTCTGTGGTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTGACAAAGCAATATCAGAATTTCAAGTTCCAACAGCCATATCAACAGGTTATGTATTACTGCTCATTACTGCTAAAAGACAACATATGGCCTTGGAATGAAGAACTTGAAGTGCTTCCACATCTTAAAGTTGATGATCTGGTTAAGTTCTATCCGCTTTTGATGGCTAGGTCCTTTATGGAGTGCTATGTAGCAG...........................................................................GAAATGTTGAACAAGCTGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCCATATCAAAGCCTCTATTTGCATCTCAGCATCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E397867" ref_strand="+" ref_description="SGN-E397867 [TUS-35-I22]">
      <seq>ggtgacaaagcaatatcagaatttcaagttccaacagccatatcaacaggttatgtattactgctcattactgctaaaagacaacatatggccttggaatgaagaacttgaagtgcttccacatcttaaagttgatgatctggttaagttctatccgcttttgatggctaggtcctttatggagtgctatgtagcaggaaatgttgaacaagctgaagcagagtccatgatacagcttattgaagatgtgttcttcaagggtccacagtcaatatcaaagcctctatttgcatctcagcatctgacaaacagagtggtcaatcttgaaagaggtgtaaattatgtctacgctgcagagggactaaatccaagtgatgaaaattcagctcttgttcattatattcaggtgcatcaggaggagggggggctgaatgtaaaacttcagctttttgctctcatagcaaagcatccagccttccaccagcttaaatcagtccagcaacttggttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="9996" stop="13160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10296" g_stop="10492" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10493" i_stop="10567" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10568" g_stop="10776" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="406" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10777" i_stop="12754" i_length="1978">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.721" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12755" g_stop="12860" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="512" r_length="106" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E397867" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10296" e_stop="10492"/>
          <exon e_start="10568" e_stop="10776"/>
          <exon e_start="12755" e_stop="12860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGACAAAGCAATATCAGAATTTCAAGTTCCAACAGCCATATCAACAGGTTATGTATTACTGCTCATTACTGCTAAAAGACAACATATGGCCTTGGAATGAAGAACTTGAAGTGCTTCCACATCTTAAAGTTGATGATCTGGTTAAGTTCTATCCGCTTTTGATGGCTAGGTCCTTTATGGAGTGCTATGTAGCAGGTTACTTTTCTCAACAGCCATTTAAGTTGTTTCATTTTACATCTATTAACTTGTGAAATCCACTGCCTTTCTCAGGAAATGTTGAACAAGCTGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAGGTAAACCTTAAGTTGATGGAATGTGCATGTAATTGACAGCAAGTTTCTCTCTTCTTCTCTCTTGTTTTTTTCTTAGAAAAAATTGGTAAAAATGTTATCTTAAATGAGTTCCTTGGAGGTCCAATACTTGCACAAAATTAATATGGGTGCTTAGAAGCAAAAGTTTTCCATTTTATTGGATGAAACATCATCCAAAACCAAAAGTAGGTGCTGGATACCCCAAATCAAAAACTCTTGCCTTGCAACTATTTAGCACCACCAGAACTTGTAGAGTGCTTGATTTTATATGGATTTCTGTCATACTTAATGTGTTCTAGTGCCCTCATTATTGGTTCTGCTTTGTTATGTTGCAATTCCTGTTACTTCTTGCCACTTTTGATAAGGTAAATAGTTTCATCAATCTGGATTCGCTTATATAAGAAGGAAGTATTACCAAAAACTGGGATACTACAAAAACATGGTTCTTTACAAAGCACACAAAGTTCTATACAGATGGGAACCTCATTGATGAACCAAAAGGGGAAGCAGAAACAAGAGGTTGTTCCTCATATGCACAATGTCCATGTGGAGAGAGAGGAACAAAAGATGTTCTCATGGCACCCAAAATCTCATCCCTACCCTTAAAGCAAGTTTATTGATCACTCTTTTTGGTTGGGTTAAAAGACCAGATCTGCTTGATGGACTTCCCAACTTTCCAAGAACTTCAACACACAAAAACCTCTCTCAGTGAGCTTGGCATGGCCCAAGCGAGTCCAAAAAGTGAGAAGAACATGTTCCATAGGTCTGTTGCAAATGTGCGATTAGGAAACAGGTGATTGATAGATTCCGAGATGCATAAGCACATGTAACATCTGTTTAACCATTTGGAGTTCCTCCTTATGAGGTTATCCTGTGTCAAGCAATAATCTTTTAGAGTAATTGAACTGAAACAAATAACTTTATGTGGCAACCTAGTTCTCCATTAATATAAGAATTTTGGGTTTAGAACAAGCAATTAAAATTTGTGTGGCCATAAATCATCTCATTAAGGGTAAATGGAAAGTTTAAAGTTCAACTATTTCTAAATATGGAAAGGCGTATTTCTTTCTAGGACAAAGGGAGTAGTATTTATTCGTTTGTAGTAATGACATATCAAGTTGGAATTGGCAACTCATCAACTTTGGTGTTGACCCTTCTTTGTAGTGGGTATCCTATTGAGTACCCATATTACCTTTTATTTGTGAATTGGATTGCTCTTCTAGAGTCATGTAATTTTCCCACATTCTTGAATATTAATCTCCATTGAGGGGCCTTTTCCATTTTTCAACATTTAGGTCTCCTTGATTTTGAAGATCCGCTGTCTTGCTATCATCTCATGTTCCTTAATTCTTTCTTCCTTCTGGAAAAAATCCTTTATGCAAAGTCGTTCTAACTAAGGCTACCTTATAAGTCAATCTTGTGAGAATAATATGCCTATCGTGATGGCAGTTTTCTTGAGAGCCTTTTTGAATTTGATCATGAACTTCTAATCAAATAGTGTCTAATCCTTTGGATGACTTGAATTGCTTGTTTTAAGGCTTAGCGTAAGTTGAATAATCAGTTTCTTTTTCCATGACCCGTAAATTCCGTTTGTACTGCTGTCATGAGTAGTGAGAGTCCTAGATCTTCTAGTTCTATAACTTCACTCAACTTCTTAATGATCATAGTTATCTGTAGCAAATACTGCTTTAATCTCGAGAAGATATTTCTTCAAATATTGGATGTCTTTCAGAGATTTATTACTGGTCATGGAGGATATTGTTTTTCTCATTTGTTGGAACAAGAACCTTGACTACAGATATGCCAGTAAAGATTTTACCAATCAATCTTCAAGATCTTTTGACATATGATTGTTCTTTTCTAAACGGAAAACAAACTTGTCTAATGCATTTGTAATGAATTGTGTCATCAATCTTTTCCTGGTTCTTTGCTTCTCTAACAAGTTTGCTTAAGTTTCCAGGTGCATCAGGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATA</genome_strand>
        <mrna_strand>GGTGACAAAGCAATATCAGAATTTCAAGTTCCAACAGCCATATCAACAGGTTATGTATTACTGCTCATTACTGCTAAAAGACAACATATGGCCTTGGAATGAAGAACTTGAAGTGCTTCCACATCTTAAAGTTGATGATCTGGTTAAGTTCTATCCGCTTTTGATGGCTAGGTCCTTTATGGAGTGCTATGTAGCAG...........................................................................GAAATGTTGAACAAGCTGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCAGGAGGAGGGGGGGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCATCCAGCCTTCCACCAGCTTAAATCAGTCCAGCAACTTGGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E370314" ref_strand="+" ref_description="SGN-E370314 [TUS-28-K13]">
      <seq>gtgacaaagcaatatcagaatttcaagttccaacagccatatcaacaggttatgtattactgctcattactgctaaaagacaacatatggccttggaatgaagaacttgaagtgcttccacatcttaaagttgatgatctggttaagttctatccgcttttgatggctaggtcctttatggagtgctatgtagcaggaaatgttgaacaagctgaagcagagtccatgatacagcttattgaagatgtgttcttcaagggtccacagtcaatatcaaagcctctatttgcatctcagcatctgacaaacagagtggtcaatcttgaaagaggtgtaaattatgtctacgctgcagagggactaaatccaagtgatgaaaattcagctcttgttcattatattcaggtgcatcaggatgactttatgctgaatgtaaaacttcagctttttgctctcatagcaaagcagccagccttccaccagcttagatcagtcgagcaacttggttatatcactgtgctcatgcagaggagcgactctggtgttcacggggtgcagtttatcgttcagtcaactgcaaaggatcccaaatacattgacacaagagtggagttatttatgaagatgtttgagagcaagctttatgagatgactagtgatgaattcaagattaatgtcaatgcacttattgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="9997" stop="15023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10297" g_stop="10492" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10493" i_stop="10567" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10568" g_stop="10776" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="405" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10777" i_stop="12754" i_length="1978">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.721" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12755" g_stop="12879" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="530" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12880" i_stop="12979" i_length="100">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12980" g_stop="13031" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="582" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13032" i_stop="13118" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13119" g_stop="13205" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="669" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13206" i_stop="14696" i_length="1491">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14697" g_stop="14723" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="696" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E370314" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10297" e_stop="10492"/>
          <exon e_start="10568" e_stop="10776"/>
          <exon e_start="12755" e_stop="12879"/>
          <exon e_start="12980" e_stop="13031"/>
          <exon e_start="13119" e_stop="13205"/>
          <exon e_start="14697" e_stop="14723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACAAAGCAATATCAGAATTTCAAGTTCCAACAGCCATATCAACAGGTTATGTATTACTGCTCATTACTGCTAAAAGACAACATATGGCCTTGGAATGAAGAACTTGAAGTGCTTCCACATCTTAAAGTTGATGATCTGGTTAAGTTCTATCCGCTTTTGATGGCTAGGTCCTTTATGGAGTGCTATGTAGCAGGTTACTTTTCTCAACAGCCATTTAAGTTGTTTCATTTTACATCTATTAACTTGTGAAATCCACTGCCTTTCTCAGGAAATGTTGAACAAGCTGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAGGTAAACCTTAAGTTGATGGAATGTGCATGTAATTGACAGCAAGTTTCTCTCTTCTTCTCTCTTGTTTTTTTCTTAGAAAAAATTGGTAAAAATGTTATCTTAAATGAGTTCCTTGGAGGTCCAATACTTGCACAAAATTAATATGGGTGCTTAGAAGCAAAAGTTTTCCATTTTATTGGATGAAACATCATCCAAAACCAAAAGTAGGTGCTGGATACCCCAAATCAAAAACTCTTGCCTTGCAACTATTTAGCACCACCAGAACTTGTAGAGTGCTTGATTTTATATGGATTTCTGTCATACTTAATGTGTTCTAGTGCCCTCATTATTGGTTCTGCTTTGTTATGTTGCAATTCCTGTTACTTCTTGCCACTTTTGATAAGGTAAATAGTTTCATCAATCTGGATTCGCTTATATAAGAAGGAAGTATTACCAAAAACTGGGATACTACAAAAACATGGTTCTTTACAAAGCACACAAAGTTCTATACAGATGGGAACCTCATTGATGAACCAAAAGGGGAAGCAGAAACAAGAGGTTGTTCCTCATATGCACAATGTCCATGTGGAGAGAGAGGAACAAAAGATGTTCTCATGGCACCCAAAATCTCATCCCTACCCTTAAAGCAAGTTTATTGATCACTCTTTTTGGTTGGGTTAAAAGACCAGATCTGCTTGATGGACTTCCCAACTTTCCAAGAACTTCAACACACAAAAACCTCTCTCAGTGAGCTTGGCATGGCCCAAGCGAGTCCAAAAAGTGAGAAGAACATGTTCCATAGGTCTGTTGCAAATGTGCGATTAGGAAACAGGTGATTGATAGATTCCGAGATGCATAAGCACATGTAACATCTGTTTAACCATTTGGAGTTCCTCCTTATGAGGTTATCCTGTGTCAAGCAATAATCTTTTAGAGTAATTGAACTGAAACAAATAACTTTATGTGGCAACCTAGTTCTCCATTAATATAAGAATTTTGGGTTTAGAACAAGCAATTAAAATTTGTGTGGCCATAAATCATCTCATTAAGGGTAAATGGAAAGTTTAAAGTTCAACTATTTCTAAATATGGAAAGGCGTATTTCTTTCTAGGACAAAGGGAGTAGTATTTATTCGTTTGTAGTAATGACATATCAAGTTGGAATTGGCAACTCATCAACTTTGGTGTTGACCCTTCTTTGTAGTGGGTATCCTATTGAGTACCCATATTACCTTTTATTTGTGAATTGGATTGCTCTTCTAGAGTCATGTAATTTTCCCACATTCTTGAATATTAATCTCCATTGAGGGGCCTTTTCCATTTTTCAACATTTAGGTCTCCTTGATTTTGAAGATCCGCTGTCTTGCTATCATCTCATGTTCCTTAATTCTTTCTTCCTTCTGGAAAAAATCCTTTATGCAAAGTCGTTCTAACTAAGGCTACCTTATAAGTCAATCTTGTGAGAATAATATGCCTATCGTGATGGCAGTTTTCTTGAGAGCCTTTTTGAATTTGATCATGAACTTCTAATCAAATAGTGTCTAATCCTTTGGATGACTTGAATTGCTTGTTTTAAGGCTTAGCGTAAGTTGAATAATCAGTTTCTTTTTCCATGACCCGTAAATTCCGTTTGTACTGCTGTCATGAGTAGTGAGAGTCCTAGATCTTCTAGTTCTATAACTTCACTCAACTTCTTAATGATCATAGTTATCTGTAGCAAATACTGCTTTAATCTCGAGAAGATATTTCTTCAAATATTGGATGTCTTTCAGAGATTTATTACTGGTCATGGAGGATATTGTTTTTCTCATTTGTTGGAACAAGAACCTTGACTACAGATATGCCAGTAAAGATTTTACCAATCAATCTTCAAGATCTTTTGACATATGATTGTTCTTTTCTAAACGGAAAACAAACTTGTCTAATGCATTTGTAATGAATTGTGTCATCAATCTTTTCCTGGTTCTTTGCTTCTCTAACAAGTTTGCTTAAGTTTCCAGGTGCATCAGGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCATGCAGAGGTATGTAGTCTGTCTTTTACTGAACACTGTTCGGCAAGTTGGCTATTCCTCCTTAACAAGTTTTGTTTTCACTTAAAGTGGACTAACATTCTCTTTCTAGGAGCGACTCTGGTGTTCACGGGGTGCAGTTTATCGTTCAGTCAACTGCAAAGGTAAAGATATTTTATCATAGGTACTGTGGAAGGAAATAAGATCGGGCATTTATAGATTATGACAAATCTACTGGTTGAGTTTGGCAGGATCCCAAATACATTGACACAAGAGTGGAGTTATTTATGAAGATGTTTGAGAGCAAGCTTTATGAGATGACTAGTGATGAATTCAAGGTGAGCTTAATAACACTTGTGCTTCTTTTTCTAGCGATGAAAGGAACTTGTAGCTACTAAATTAGTCTCAATATTGTCAGGAAGGTTCAGTAAGTTTTGGGGTTTAATCTTGGGACTTGGCTCTTAAGGATAATCCTAATCCACAAAGTTGACAGCTTCATTTCTTATCAGGCCGTAACGGATTATTATTATGTACTTTTGATAACTCAAATTATTATCACTGGCGAAAGGGAAAATAACCATTGACATAGCACAAAGATGGTATAACCATACTATGTGGATTTTCATCAGCCCTTCAAAAAAACCATTCAACTGTATATAATATGGAATAGAACTAAAAGGAGCTCTTGCTCTCCAAACTGGAGTGCTATGTTGCACTTTCTTCTGGTTTGAGAAGGAAATCTTCAGAACGGAGTTTAAATCCCTTTAAAGAGTTTTTGTTTGTTCCCTATAAATCAGCCAAATGATGCATCCAGGCGAGACTTTCAACGGCTCTTTTTCCGTTGGGACCTTTGCGATCTCAAACTAGCCTGTGCTTCCTCTTTACCCAAAACTAGTCTGTGCTCCTCATGGACGATTGAAATAGTCCATGTCTTCTCTATTTGCCGTACAAAAACATCAACTAACTCCTCACATTGTGGGCATGAGTATAGGCACTCCTAGCTCACATAATCAGAGGGTGCCACCTAGGGATGGCAATGCGGCGGATGCAGGGTGGGGTGGGTTCAAGACTATGTGGGGCGGCTTGAAGTGGTTTCTTTTAAAAACTAATGTGGTGCAGGGCGGATTGTGGGTATATGTAATTTTATGTGAGTTCAAACTTAATTTTAAAACTTTTTACATGTTATAAGAGTGATAAAACATTATTTATTTAGATAATTTCTTTAAATTTTACATGTTTCCCAATTGACCTCCAAAAAATAAATTCTTAAGTTACTATCCTATTTAATTAATACAACTTAATGGAAAAATGAATTTGTTTTTATGAATTTTATTTTTTGTATCAAACTTAACTATAAGAAGAAAATATTAATTTAATTATGTGGGGTGGGTTTCATGCGCGTCTGGTCTATGCGGGGCGGGTTGAAAATGAAAAAAATTGTCATGTAGGGTGGGGCGGGAAGGATTTTAAACTTTGTGGGTTAAGCTCAACCCACCCCGCCCCCATTGCCATCCCTTGCGCCACCCTTTTAGGAGTCTTTGACTTCCATGTGGCTCCATGTTTTGACTCATCATAATTGCTTACATTATCACCGTTTTGTTTCGTGAAAAGCTTCATTGTTGTTGCCCCCCCCCCCCCCCCCCACTCTATAATAAAGCACTCCGGATTGTATACTTAGCTAGCTACTGTTGCTTATTAATTAATAGGATGTAGGTTTTGTCAAAGTTTTCGTGTCTGCAGTACATGGTGGCTTACTGTTATCCGTCTATACTTTGATAACTTTCCAGTATAGCTTTCTGGTCCCTAACTTTTATCCATTTATGATACAGAATAATGTCAATGCACTTATTGATATG</genome_strand>
        <mrna_strand>GTGACAAAGCAATATCAGAATTTCAAGTTCCAACAGCCATATCAACAGGTTATGTATTACTGCTCATTACTGCTAAAAGACAACATATGGCCTTGGAATGAAGAACTTGAAGTGCTTCCACATCTTAAAGTTGATGATCTGGTTAAGTTCTATCCGCTTTTGATGGCTAGGTCCTTTATGGAGTGCTATGTAGCAG...........................................................................GAAATGTTGAACAAGCTGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCAGGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCATGCAGAG....................................................................................................GAGCGACTCTGGTGTTCACGGGGTGCAGTTTATCGTTCAGTCAACTGCAAAG.......................................................................................GATCCCAAATACATTGACACAAGAGTGGAGTTATTTATGAAGATGTTTGAGAGCAAGCTTTATGAGATGACTAGTGATGAATTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATGTCAATGCACTTATTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E272060" ref_strand="+" ref_description="SGN-E272060 [cLEM-8-D14]">
      <seq>gtgacaaagcaatatcagaatttcaagttccaacagccatatcaacaggttatgtattactgctcattactgctaaaagacaacatatggccttggaatgaagaacttgaagtgcttccacatcttaaagttgatgatctggttaagttctatccgcttttgatggctaggtcctttatggagtgctatgtagcaagaaatgttgaacaagctgaagcagagtccatgatacagcttattgaagatgtgttcttcaagggtccacagtcaatatcaaagcctctatttgcatctcagcatctgacaaacagagtggtcaatcttgaaagaggtgtaaattatgtctacgctgcagagggactaaatccaagtgatgaaaattcagctcttgttcattatattcaggtgcatcaagatgactttatgctgaatgtaaaacttcagctttttgctctcatagcaaagcagccagccttccaccagcttagatcaatcgagcaacttgggtatatcactgtgctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="9997" stop="13173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10297" g_stop="10492" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10493" i_stop="10567" i_length="75">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10568" g_stop="10776" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="405" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10777" i_stop="12754" i_length="1978">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.721" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12755" g_stop="12873" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="524" r_length="119" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E272060" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10297" e_stop="10492"/>
          <exon e_start="10568" e_stop="10776"/>
          <exon e_start="12755" e_stop="12873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACAAAGCAATATCAGAATTTCAAGTTCCAACAGCCATATCAACAGGTTATGTATTACTGCTCATTACTGCTAAAAGACAACATATGGCCTTGGAATGAAGAACTTGAAGTGCTTCCACATCTTAAAGTTGATGATCTGGTTAAGTTCTATCCGCTTTTGATGGCTAGGTCCTTTATGGAGTGCTATGTAGCAGGTTACTTTTCTCAACAGCCATTTAAGTTGTTTCATTTTACATCTATTAACTTGTGAAATCCACTGCCTTTCTCAGGAAATGTTGAACAAGCTGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAGGTAAACCTTAAGTTGATGGAATGTGCATGTAATTGACAGCAAGTTTCTCTCTTCTTCTCTCTTGTTTTTTTCTTAGAAAAAATTGGTAAAAATGTTATCTTAAATGAGTTCCTTGGAGGTCCAATACTTGCACAAAATTAATATGGGTGCTTAGAAGCAAAAGTTTTCCATTTTATTGGATGAAACATCATCCAAAACCAAAAGTAGGTGCTGGATACCCCAAATCAAAAACTCTTGCCTTGCAACTATTTAGCACCACCAGAACTTGTAGAGTGCTTGATTTTATATGGATTTCTGTCATACTTAATGTGTTCTAGTGCCCTCATTATTGGTTCTGCTTTGTTATGTTGCAATTCCTGTTACTTCTTGCCACTTTTGATAAGGTAAATAGTTTCATCAATCTGGATTCGCTTATATAAGAAGGAAGTATTACCAAAAACTGGGATACTACAAAAACATGGTTCTTTACAAAGCACACAAAGTTCTATACAGATGGGAACCTCATTGATGAACCAAAAGGGGAAGCAGAAACAAGAGGTTGTTCCTCATATGCACAATGTCCATGTGGAGAGAGAGGAACAAAAGATGTTCTCATGGCACCCAAAATCTCATCCCTACCCTTAAAGCAAGTTTATTGATCACTCTTTTTGGTTGGGTTAAAAGACCAGATCTGCTTGATGGACTTCCCAACTTTCCAAGAACTTCAACACACAAAAACCTCTCTCAGTGAGCTTGGCATGGCCCAAGCGAGTCCAAAAAGTGAGAAGAACATGTTCCATAGGTCTGTTGCAAATGTGCGATTAGGAAACAGGTGATTGATAGATTCCGAGATGCATAAGCACATGTAACATCTGTTTAACCATTTGGAGTTCCTCCTTATGAGGTTATCCTGTGTCAAGCAATAATCTTTTAGAGTAATTGAACTGAAACAAATAACTTTATGTGGCAACCTAGTTCTCCATTAATATAAGAATTTTGGGTTTAGAACAAGCAATTAAAATTTGTGTGGCCATAAATCATCTCATTAAGGGTAAATGGAAAGTTTAAAGTTCAACTATTTCTAAATATGGAAAGGCGTATTTCTTTCTAGGACAAAGGGAGTAGTATTTATTCGTTTGTAGTAATGACATATCAAGTTGGAATTGGCAACTCATCAACTTTGGTGTTGACCCTTCTTTGTAGTGGGTATCCTATTGAGTACCCATATTACCTTTTATTTGTGAATTGGATTGCTCTTCTAGAGTCATGTAATTTTCCCACATTCTTGAATATTAATCTCCATTGAGGGGCCTTTTCCATTTTTCAACATTTAGGTCTCCTTGATTTTGAAGATCCGCTGTCTTGCTATCATCTCATGTTCCTTAATTCTTTCTTCCTTCTGGAAAAAATCCTTTATGCAAAGTCGTTCTAACTAAGGCTACCTTATAAGTCAATCTTGTGAGAATAATATGCCTATCGTGATGGCAGTTTTCTTGAGAGCCTTTTTGAATTTGATCATGAACTTCTAATCAAATAGTGTCTAATCCTTTGGATGACTTGAATTGCTTGTTTTAAGGCTTAGCGTAAGTTGAATAATCAGTTTCTTTTTCCATGACCCGTAAATTCCGTTTGTACTGCTGTCATGAGTAGTGAGAGTCCTAGATCTTCTAGTTCTATAACTTCACTCAACTTCTTAATGATCATAGTTATCTGTAGCAAATACTGCTTTAATCTCGAGAAGATATTTCTTCAAATATTGGATGTCTTTCAGAGATTTATTACTGGTCATGGAGGATATTGTTTTTCTCATTTGTTGGAACAAGAACCTTGACTACAGATATGCCAGTAAAGATTTTACCAATCAATCTTCAAGATCTTTTGACATATGATTGTTCTTTTCTAAACGGAAAACAAACTTGTCTAATGCATTTGTAATGAATTGTGTCATCAATCTTTTCCTGGTTCTTTGCTTCTCTAACAAGTTTGCTTAAGTTTCCAGGTGCATCAGGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCAT</genome_strand>
        <mrna_strand>GTGACAAAGCAATATCAGAATTTCAAGTTCCAACAGCCATATCAACAGGTTATGTATTACTGCTCATTACTGCTAAAAGACAACATATGGCCTTGGAATGAAGAACTTGAAGTGCTTCCACATCTTAAAGTTGATGATCTGGTTAAGTTCTATCCGCTTTTGATGGCTAGGTCCTTTATGGAGTGCTATGTAGCAA...........................................................................GAAATGTTGAACAAGCTGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCAAGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAATCGAGCAACTTGGGTATATCACTGTGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E244841" ref_strand="+" ref_description="SGN-E244841 [cLEF-2-G2]">
      <seq>tgaagcagagtccatgatacagcttattgaagatgtgttcttcaagggtccacagtcaatatcaaagcctctatttgcatctcagcatctgacaaacagagtggtcaatcttgaaagaggtgtaaatgatgtctacgctgcagagggactaaatccaagtgatgaaaattcagctcttgttcattatattcaggtgcatcaggatgactttatgctgaatgtaaaacttcagctttttgctctcatagcaaagcagccagccttccaccagcttagatcagtcgagcaacttggttatatcactgtgctcatgcagaggagcgactctggtgttcacggggtgcagtttatcgttcagtcaactgcaaaggatcccaaatacattgacacaagagtggagttatttatgaagatgtttgagagcaagctttatgagatgactagtgatgaattcaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="10284" stop="13505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10584" g_stop="10776" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10777" i_stop="12754" i_length="1978">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.721" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12755" g_stop="12879" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="318" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12880" i_stop="12979" i_length="100">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12980" g_stop="13031" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="370" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13032" i_stop="13118" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13119" g_stop="13205" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="457" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E244841" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10584" e_stop="10776"/>
          <exon e_start="12755" e_stop="12879"/>
          <exon e_start="12980" e_stop="13031"/>
          <exon e_start="13119" e_stop="13205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAGGTAAACCTTAAGTTGATGGAATGTGCATGTAATTGACAGCAAGTTTCTCTCTTCTTCTCTCTTGTTTTTTTCTTAGAAAAAATTGGTAAAAATGTTATCTTAAATGAGTTCCTTGGAGGTCCAATACTTGCACAAAATTAATATGGGTGCTTAGAAGCAAAAGTTTTCCATTTTATTGGATGAAACATCATCCAAAACCAAAAGTAGGTGCTGGATACCCCAAATCAAAAACTCTTGCCTTGCAACTATTTAGCACCACCAGAACTTGTAGAGTGCTTGATTTTATATGGATTTCTGTCATACTTAATGTGTTCTAGTGCCCTCATTATTGGTTCTGCTTTGTTATGTTGCAATTCCTGTTACTTCTTGCCACTTTTGATAAGGTAAATAGTTTCATCAATCTGGATTCGCTTATATAAGAAGGAAGTATTACCAAAAACTGGGATACTACAAAAACATGGTTCTTTACAAAGCACACAAAGTTCTATACAGATGGGAACCTCATTGATGAACCAAAAGGGGAAGCAGAAACAAGAGGTTGTTCCTCATATGCACAATGTCCATGTGGAGAGAGAGGAACAAAAGATGTTCTCATGGCACCCAAAATCTCATCCCTACCCTTAAAGCAAGTTTATTGATCACTCTTTTTGGTTGGGTTAAAAGACCAGATCTGCTTGATGGACTTCCCAACTTTCCAAGAACTTCAACACACAAAAACCTCTCTCAGTGAGCTTGGCATGGCCCAAGCGAGTCCAAAAAGTGAGAAGAACATGTTCCATAGGTCTGTTGCAAATGTGCGATTAGGAAACAGGTGATTGATAGATTCCGAGATGCATAAGCACATGTAACATCTGTTTAACCATTTGGAGTTCCTCCTTATGAGGTTATCCTGTGTCAAGCAATAATCTTTTAGAGTAATTGAACTGAAACAAATAACTTTATGTGGCAACCTAGTTCTCCATTAATATAAGAATTTTGGGTTTAGAACAAGCAATTAAAATTTGTGTGGCCATAAATCATCTCATTAAGGGTAAATGGAAAGTTTAAAGTTCAACTATTTCTAAATATGGAAAGGCGTATTTCTTTCTAGGACAAAGGGAGTAGTATTTATTCGTTTGTAGTAATGACATATCAAGTTGGAATTGGCAACTCATCAACTTTGGTGTTGACCCTTCTTTGTAGTGGGTATCCTATTGAGTACCCATATTACCTTTTATTTGTGAATTGGATTGCTCTTCTAGAGTCATGTAATTTTCCCACATTCTTGAATATTAATCTCCATTGAGGGGCCTTTTCCATTTTTCAACATTTAGGTCTCCTTGATTTTGAAGATCCGCTGTCTTGCTATCATCTCATGTTCCTTAATTCTTTCTTCCTTCTGGAAAAAATCCTTTATGCAAAGTCGTTCTAACTAAGGCTACCTTATAAGTCAATCTTGTGAGAATAATATGCCTATCGTGATGGCAGTTTTCTTGAGAGCCTTTTTGAATTTGATCATGAACTTCTAATCAAATAGTGTCTAATCCTTTGGATGACTTGAATTGCTTGTTTTAAGGCTTAGCGTAAGTTGAATAATCAGTTTCTTTTTCCATGACCCGTAAATTCCGTTTGTACTGCTGTCATGAGTAGTGAGAGTCCTAGATCTTCTAGTTCTATAACTTCACTCAACTTCTTAATGATCATAGTTATCTGTAGCAAATACTGCTTTAATCTCGAGAAGATATTTCTTCAAATATTGGATGTCTTTCAGAGATTTATTACTGGTCATGGAGGATATTGTTTTTCTCATTTGTTGGAACAAGAACCTTGACTACAGATATGCCAGTAAAGATTTTACCAATCAATCTTCAAGATCTTTTGACATATGATTGTTCTTTTCTAAACGGAAAACAAACTTGTCTAATGCATTTGTAATGAATTGTGTCATCAATCTTTTCCTGGTTCTTTGCTTCTCTAACAAGTTTGCTTAAGTTTCCAGGTGCATCAGGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCATGCAGAGGTATGTAGTCTGTCTTTTACTGAACACTGTTCGGCAAGTTGGCTATTCCTCCTTAACAAGTTTTGTTTTCACTTAAAGTGGACTAACATTCTCTTTCTAGGAGCGACTCTGGTGTTCACGGGGTGCAGTTTATCGTTCAGTCAACTGCAAAGGTAAAGATATTTTATCATAGGTACTGTGGAAGGAAATAAGATCGGGCATTTATAGATTATGACAAATCTACTGGTTGAGTTTGGCAGGATCCCAAATACATTGACACAAGAGTGGAGTTATTTATGAAGATGTTTGAGAGCAAGCTTTATGAGATGACTAGTGATGAATTCAAG</genome_strand>
        <mrna_strand>TGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATGATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCAGGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCATGCAGAG....................................................................................................GAGCGACTCTGGTGTTCACGGGGTGCAGTTTATCGTTCAGTCAACTGCAAAG.......................................................................................GATCCCAAATACATTGACACAAGAGTGGAGTTATTTATGAAGATGTTTGAGAGCAAGCTTTATGAGATGACTAGTGATGAATTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E736677" ref_strand="+" ref_description="SGN-E736677 [LC06CH05]">
      <seq>gcttattgaagatgtgttcttcaagggtccacagtcaatatcaaagcctctatttgcatctcagcatctgacaaacagagtggtcaatcttgaaagaggtgtaaattatgtctacgctgcagagggactaaatccaagtgatgaaaattcagctcttgttcattatattcaggtgcatcaggatgactttatgctgaatgtaaaacttcagctttttgctctcatagcaaagcagccagccttccaccagcttagatcagtcgagcaacttggttatatcactgtgctcatgcagaggagcgactctggtgttcacggggtgcagtttatcgttcagtcaactgcaaaggatcccaaatacattgacacaagagtggagttatttatgaagatgtttgagagcaagctttatgagatgactagtgatgaattcaagaataatgtcaatgcacttattgatatgaagcttgagaaacacaagaatttacgggaggaatctcggttttactggagggagatctcagatgggaccctcaagtttgatagacgagaccgtgagattgtcgcgttaaagcaactgactcaaaaggagctgacagatttcttcgatgaatatattaaagtcggtgttcctcggaagaaggccttaagtgtcagagtctatggaagctcacattcttctcaattccaagcacataagaatgagcagatggaaccaaatgcagttcagatagaagaaatatttagctttcgacgatctcggcctctttatagttcattcaaaggaggctttggtcatgtgagattgtaagaggtcgcatagcagctcgagaagccccccaatgcagntgatatgttgcgttagcgagtccattacagaagcagttgatctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="10305" stop="16095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10605" g_stop="10776" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10777" i_stop="12754" i_length="1978">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.721" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12755" g_stop="12879" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="297" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12880" i_stop="12979" i_length="100">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12980" g_stop="13031" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="349" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13032" i_stop="13118" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13119" g_stop="13205" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="436" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13206" i_stop="14696" i_length="1491">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14697" g_stop="14819" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="559" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14820" i_stop="15459" i_length="640">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.641" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15460" g_stop="15795" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="895" r_length="336" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E736677" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10605" e_stop="10776"/>
          <exon e_start="12755" e_stop="12879"/>
          <exon e_start="12980" e_stop="13031"/>
          <exon e_start="13119" e_stop="13205"/>
          <exon e_start="14697" e_stop="14819"/>
          <exon e_start="15460" e_stop="15795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAGGTAAACCTTAAGTTGATGGAATGTGCATGTAATTGACAGCAAGTTTCTCTCTTCTTCTCTCTTGTTTTTTTCTTAGAAAAAATTGGTAAAAATGTTATCTTAAATGAGTTCCTTGGAGGTCCAATACTTGCACAAAATTAATATGGGTGCTTAGAAGCAAAAGTTTTCCATTTTATTGGATGAAACATCATCCAAAACCAAAAGTAGGTGCTGGATACCCCAAATCAAAAACTCTTGCCTTGCAACTATTTAGCACCACCAGAACTTGTAGAGTGCTTGATTTTATATGGATTTCTGTCATACTTAATGTGTTCTAGTGCCCTCATTATTGGTTCTGCTTTGTTATGTTGCAATTCCTGTTACTTCTTGCCACTTTTGATAAGGTAAATAGTTTCATCAATCTGGATTCGCTTATATAAGAAGGAAGTATTACCAAAAACTGGGATACTACAAAAACATGGTTCTTTACAAAGCACACAAAGTTCTATACAGATGGGAACCTCATTGATGAACCAAAAGGGGAAGCAGAAACAAGAGGTTGTTCCTCATATGCACAATGTCCATGTGGAGAGAGAGGAACAAAAGATGTTCTCATGGCACCCAAAATCTCATCCCTACCCTTAAAGCAAGTTTATTGATCACTCTTTTTGGTTGGGTTAAAAGACCAGATCTGCTTGATGGACTTCCCAACTTTCCAAGAACTTCAACACACAAAAACCTCTCTCAGTGAGCTTGGCATGGCCCAAGCGAGTCCAAAAAGTGAGAAGAACATGTTCCATAGGTCTGTTGCAAATGTGCGATTAGGAAACAGGTGATTGATAGATTCCGAGATGCATAAGCACATGTAACATCTGTTTAACCATTTGGAGTTCCTCCTTATGAGGTTATCCTGTGTCAAGCAATAATCTTTTAGAGTAATTGAACTGAAACAAATAACTTTATGTGGCAACCTAGTTCTCCATTAATATAAGAATTTTGGGTTTAGAACAAGCAATTAAAATTTGTGTGGCCATAAATCATCTCATTAAGGGTAAATGGAAAGTTTAAAGTTCAACTATTTCTAAATATGGAAAGGCGTATTTCTTTCTAGGACAAAGGGAGTAGTATTTATTCGTTTGTAGTAATGACATATCAAGTTGGAATTGGCAACTCATCAACTTTGGTGTTGACCCTTCTTTGTAGTGGGTATCCTATTGAGTACCCATATTACCTTTTATTTGTGAATTGGATTGCTCTTCTAGAGTCATGTAATTTTCCCACATTCTTGAATATTAATCTCCATTGAGGGGCCTTTTCCATTTTTCAACATTTAGGTCTCCTTGATTTTGAAGATCCGCTGTCTTGCTATCATCTCATGTTCCTTAATTCTTTCTTCCTTCTGGAAAAAATCCTTTATGCAAAGTCGTTCTAACTAAGGCTACCTTATAAGTCAATCTTGTGAGAATAATATGCCTATCGTGATGGCAGTTTTCTTGAGAGCCTTTTTGAATTTGATCATGAACTTCTAATCAAATAGTGTCTAATCCTTTGGATGACTTGAATTGCTTGTTTTAAGGCTTAGCGTAAGTTGAATAATCAGTTTCTTTTTCCATGACCCGTAAATTCCGTTTGTACTGCTGTCATGAGTAGTGAGAGTCCTAGATCTTCTAGTTCTATAACTTCACTCAACTTCTTAATGATCATAGTTATCTGTAGCAAATACTGCTTTAATCTCGAGAAGATATTTCTTCAAATATTGGATGTCTTTCAGAGATTTATTACTGGTCATGGAGGATATTGTTTTTCTCATTTGTTGGAACAAGAACCTTGACTACAGATATGCCAGTAAAGATTTTACCAATCAATCTTCAAGATCTTTTGACATATGATTGTTCTTTTCTAAACGGAAAACAAACTTGTCTAATGCATTTGTAATGAATTGTGTCATCAATCTTTTCCTGGTTCTTTGCTTCTCTAACAAGTTTGCTTAAGTTTCCAGGTGCATCAGGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCATGCAGAGGTATGTAGTCTGTCTTTTACTGAACACTGTTCGGCAAGTTGGCTATTCCTCCTTAACAAGTTTTGTTTTCACTTAAAGTGGACTAACATTCTCTTTCTAGGAGCGACTCTGGTGTTCACGGGGTGCAGTTTATCGTTCAGTCAACTGCAAAGGTAAAGATATTTTATCATAGGTACTGTGGAAGGAAATAAGATCGGGCATTTATAGATTATGACAAATCTACTGGTTGAGTTTGGCAGGATCCCAAATACATTGACACAAGAGTGGAGTTATTTATGAAGATGTTTGAGAGCAAGCTTTATGAGATGACTAGTGATGAATTCAAGGTGAGCTTAATAACACTTGTGCTTCTTTTTCTAGCGATGAAAGGAACTTGTAGCTACTAAATTAGTCTCAATATTGTCAGGAAGGTTCAGTAAGTTTTGGGGTTTAATCTTGGGACTTGGCTCTTAAGGATAATCCTAATCCACAAAGTTGACAGCTTCATTTCTTATCAGGCCGTAACGGATTATTATTATGTACTTTTGATAACTCAAATTATTATCACTGGCGAAAGGGAAAATAACCATTGACATAGCACAAAGATGGTATAACCATACTATGTGGATTTTCATCAGCCCTTCAAAAAAACCATTCAACTGTATATAATATGGAATAGAACTAAAAGGAGCTCTTGCTCTCCAAACTGGAGTGCTATGTTGCACTTTCTTCTGGTTTGAGAAGGAAATCTTCAGAACGGAGTTTAAATCCCTTTAAAGAGTTTTTGTTTGTTCCCTATAAATCAGCCAAATGATGCATCCAGGCGAGACTTTCAACGGCTCTTTTTCCGTTGGGACCTTTGCGATCTCAAACTAGCCTGTGCTTCCTCTTTACCCAAAACTAGTCTGTGCTCCTCATGGACGATTGAAATAGTCCATGTCTTCTCTATTTGCCGTACAAAAACATCAACTAACTCCTCACATTGTGGGCATGAGTATAGGCACTCCTAGCTCACATAATCAGAGGGTGCCACCTAGGGATGGCAATGCGGCGGATGCAGGGTGGGGTGGGTTCAAGACTATGTGGGGCGGCTTGAAGTGGTTTCTTTTAAAAACTAATGTGGTGCAGGGCGGATTGTGGGTATATGTAATTTTATGTGAGTTCAAACTTAATTTTAAAACTTTTTACATGTTATAAGAGTGATAAAACATTATTTATTTAGATAATTTCTTTAAATTTTACATGTTTCCCAATTGACCTCCAAAAAATAAATTCTTAAGTTACTATCCTATTTAATTAATACAACTTAATGGAAAAATGAATTTGTTTTTATGAATTTTATTTTTTGTATCAAACTTAACTATAAGAAGAAAATATTAATTTAATTATGTGGGGTGGGTTTCATGCGCGTCTGGTCTATGCGGGGCGGGTTGAAAATGAAAAAAATTGTCATGTAGGGTGGGGCGGGAAGGATTTTAAACTTTGTGGGTTAAGCTCAACCCACCCCGCCCCCATTGCCATCCCTTGCGCCACCCTTTTAGGAGTCTTTGACTTCCATGTGGCTCCATGTTTTGACTCATCATAATTGCTTACATTATCACCGTTTTGTTTCGTGAAAAGCTTCATTGTTGTTGCCCCCCCCCCCCCCCCCCACTCTATAATAAAGCACTCCGGATTGTATACTTAGCTAGCTACTGTTGCTTATTAATTAATAGGATGTAGGTTTTGTCAAAGTTTTCGTGTCTGCAGTACATGGTGGCTTACTGTTATCCGTCTATACTTTGATAACTTTCCAGTATAGCTTTCTGGTCCCTAACTTTTATCCATTTATGATACAGAATAATGTCAATGCACTTATTGATATGAAGCTTGAGAAACACAAGAATTTACGGGAGGAATCTCGGTTTTACTGGAGGGAGATCTCAGATGGGACCCTCAAGTTTGATAGACGAGACCGTGAGGTATGAAAATTGCTACACTCATGTAAAGAATCACTTCCATTTCATGAGCATTTGTCAGAGTTAATGACTCTACTTCTTTATGTTTTGTTTTTGCACAAAGTGAGACTAAACTGATGTAAAAGGAATAGGTCAAATGTATGACATCACCCTATTATGTAGAGTTCTTCTGTAGGTTTTTACCTTTTTGACCACATAATAATAACAACATACATAGTGTAATCCCACATGTGGGGTTTGGGGAGAGTACGGTGTATACAAACCTTATCCCTACCTTGGGAGGTAGTGAGGTTGTTTGCTATAGACCCTCGGCTGAAGGAAAAGCATATCAAAATGTACTAGTGCTATTGTTATTTCGGTAGAGTCCTTTTTTTTTAATTCTAGAAATGTATGCATTTTGAGTCACTTTTGACTGTTGTTAGTGGCTCACGCCGAAAACCTATAATTTATTCCGGTAATTGATGTCATTTACAGTAATTTAAGTATGGATCAGTCTGTGGCTTGTGTCTGGTCAGCAGCCTATCTTACTGTCCTTTTCGTTTCCCGTCTGGTTTTTCATGACTGCTGAAAGAAATTCAAAACATTTCCACAATCATAGGGGGAAAATGTATCTAATCAGTTGTCAATGATATTGATGAAACAGATTGTCGCGTTAAAGCAACTGACTCAAAAGGAGCTGACAGATTTCTTCGATGAATATATTAAAGTCGGTGTTCCTCGGAAGAAGGCCTTAAGTGTCAGAGTCTATGGAAGCTCACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCA</genome_strand>
        <mrna_strand>GCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCAGGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCATGCAGAG....................................................................................................GAGCGACTCTGGTGTTCACGGGGTGCAGTTTATCGTTCAGTCAACTGCAAAG.......................................................................................GATCCCAAATACATTGACACAAGAGTGGAGTTATTTATGAAGATGTTTGAGAGCAAGCTTTATGAGATGACTAGTGATGAATTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATGTCAATGCACTTATTGATATGAAGCTTGAGAAACACAAGAATTTACGGGAGGAATCTCGGTTTTACTGGAGGGAGATCTCAGATGGGACCCTCAAGTTTGATAGACGAGACCGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCGCGTTAAAGCAACTGACTCAAAAGGAGCTGACAGATTTCTTCGATGAATATATTAAAGTCGGTGTTCCTCGGAAGAAGGCCTTAAGTGTCAGAGTCTATGGAAGCTCACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGNTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E697917" ref_strand="+" ref_description="SGN-E697917 [FA04CG10]">
      <seq>ccggtatgactatgctgaatgtaaaacttcagctttttgctctcatagcaaagcagccagccttccaccagcttagatcagtcgagcaacttggttatatcactgtgctcatgcagaggagcgactctggtgttcacggggtgcagtttatcgttcagtcaactgcaaaggatcccaaatacattgacacaagagtggagttatttatgaagatgtttgagagcaagctttatgagatgactagtgatgaattcaagaataatgtcaatgcacttattgatatgaagcttgagaaacacaagaatttacgggaggaatctcggttttactggagggagatctcagatgggaccctcaagtttgatagacgagaccgtgagattgtcgcgttaaagcaactgactcaaaaggagctgacagatttcttcgatgaatatattaaagtcggtgttcctcggaagaaggccttaagtgtcagagtctatggaagctcacattcttctcaattccaagcacataagaatgagcagatggaaccaaatgcagttcagatagaagaaatatttagctttcgacgatctcggcctctttatagttcattcaaaggaggctttggtcatgtgagattgtaagaggtcgcatagcagctcgagaagccccccaatgcagttgatatgttgcgttagcgagtccattacagaaacagttgatctgcaagatacctctctcgtattcagttgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="12472" stop="16123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12760" g_stop="12879" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12880" i_stop="12979" i_length="100">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12980" g_stop="13031" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="170" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13032" i_stop="13118" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13119" g_stop="13205" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="257" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13206" i_stop="14696" i_length="1491">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14697" g_stop="14819" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="380" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14820" i_stop="15459" i_length="640">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.641" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15460" g_stop="15823" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="744" r_length="364" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E697917" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12760" e_stop="12879"/>
          <exon e_start="12980" e_stop="13031"/>
          <exon e_start="13119" e_stop="13205"/>
          <exon e_start="14697" e_stop="14819"/>
          <exon e_start="15460" e_stop="15823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCATGCAGAGGTATGTAGTCTGTCTTTTACTGAACACTGTTCGGCAAGTTGGCTATTCCTCCTTAACAAGTTTTGTTTTCACTTAAAGTGGACTAACATTCTCTTTCTAGGAGCGACTCTGGTGTTCACGGGGTGCAGTTTATCGTTCAGTCAACTGCAAAGGTAAAGATATTTTATCATAGGTACTGTGGAAGGAAATAAGATCGGGCATTTATAGATTATGACAAATCTACTGGTTGAGTTTGGCAGGATCCCAAATACATTGACACAAGAGTGGAGTTATTTATGAAGATGTTTGAGAGCAAGCTTTATGAGATGACTAGTGATGAATTCAAGGTGAGCTTAATAACACTTGTGCTTCTTTTTCTAGCGATGAAAGGAACTTGTAGCTACTAAATTAGTCTCAATATTGTCAGGAAGGTTCAGTAAGTTTTGGGGTTTAATCTTGGGACTTGGCTCTTAAGGATAATCCTAATCCACAAAGTTGACAGCTTCATTTCTTATCAGGCCGTAACGGATTATTATTATGTACTTTTGATAACTCAAATTATTATCACTGGCGAAAGGGAAAATAACCATTGACATAGCACAAAGATGGTATAACCATACTATGTGGATTTTCATCAGCCCTTCAAAAAAACCATTCAACTGTATATAATATGGAATAGAACTAAAAGGAGCTCTTGCTCTCCAAACTGGAGTGCTATGTTGCACTTTCTTCTGGTTTGAGAAGGAAATCTTCAGAACGGAGTTTAAATCCCTTTAAAGAGTTTTTGTTTGTTCCCTATAAATCAGCCAAATGATGCATCCAGGCGAGACTTTCAACGGCTCTTTTTCCGTTGGGACCTTTGCGATCTCAAACTAGCCTGTGCTTCCTCTTTACCCAAAACTAGTCTGTGCTCCTCATGGACGATTGAAATAGTCCATGTCTTCTCTATTTGCCGTACAAAAACATCAACTAACTCCTCACATTGTGGGCATGAGTATAGGCACTCCTAGCTCACATAATCAGAGGGTGCCACCTAGGGATGGCAATGCGGCGGATGCAGGGTGGGGTGGGTTCAAGACTATGTGGGGCGGCTTGAAGTGGTTTCTTTTAAAAACTAATGTGGTGCAGGGCGGATTGTGGGTATATGTAATTTTATGTGAGTTCAAACTTAATTTTAAAACTTTTTACATGTTATAAGAGTGATAAAACATTATTTATTTAGATAATTTCTTTAAATTTTACATGTTTCCCAATTGACCTCCAAAAAATAAATTCTTAAGTTACTATCCTATTTAATTAATACAACTTAATGGAAAAATGAATTTGTTTTTATGAATTTTATTTTTTGTATCAAACTTAACTATAAGAAGAAAATATTAATTTAATTATGTGGGGTGGGTTTCATGCGCGTCTGGTCTATGCGGGGCGGGTTGAAAATGAAAAAAATTGTCATGTAGGGTGGGGCGGGAAGGATTTTAAACTTTGTGGGTTAAGCTCAACCCACCCCGCCCCCATTGCCATCCCTTGCGCCACCCTTTTAGGAGTCTTTGACTTCCATGTGGCTCCATGTTTTGACTCATCATAATTGCTTACATTATCACCGTTTTGTTTCGTGAAAAGCTTCATTGTTGTTGCCCCCCCCCCCCCCCCCCACTCTATAATAAAGCACTCCGGATTGTATACTTAGCTAGCTACTGTTGCTTATTAATTAATAGGATGTAGGTTTTGTCAAAGTTTTCGTGTCTGCAGTACATGGTGGCTTACTGTTATCCGTCTATACTTTGATAACTTTCCAGTATAGCTTTCTGGTCCCTAACTTTTATCCATTTATGATACAGAATAATGTCAATGCACTTATTGATATGAAGCTTGAGAAACACAAGAATTTACGGGAGGAATCTCGGTTTTACTGGAGGGAGATCTCAGATGGGACCCTCAAGTTTGATAGACGAGACCGTGAGGTATGAAAATTGCTACACTCATGTAAAGAATCACTTCCATTTCATGAGCATTTGTCAGAGTTAATGACTCTACTTCTTTATGTTTTGTTTTTGCACAAAGTGAGACTAAACTGATGTAAAAGGAATAGGTCAAATGTATGACATCACCCTATTATGTAGAGTTCTTCTGTAGGTTTTTACCTTTTTGACCACATAATAATAACAACATACATAGTGTAATCCCACATGTGGGGTTTGGGGAGAGTACGGTGTATACAAACCTTATCCCTACCTTGGGAGGTAGTGAGGTTGTTTGCTATAGACCCTCGGCTGAAGGAAAAGCATATCAAAATGTACTAGTGCTATTGTTATTTCGGTAGAGTCCTTTTTTTTTAATTCTAGAAATGTATGCATTTTGAGTCACTTTTGACTGTTGTTAGTGGCTCACGCCGAAAACCTATAATTTATTCCGGTAATTGATGTCATTTACAGTAATTTAAGTATGGATCAGTCTGTGGCTTGTGTCTGGTCAGCAGCCTATCTTACTGTCCTTTTCGTTTCCCGTCTGGTTTTTCATGACTGCTGAAAGAAATTCAAAACATTTCCACAATCATAGGGGGAAAATGTATCTAATCAGTTGTCAATGATATTGATGAAACAGATTGTCGCGTTAAAGCAACTGACTCAAAAGGAGCTGACAGATTTCTTCGATGAATATATTAAAGTCGGTGTTCCTCGGAAGAAGGCCTTAAGTGTCAGAGTCTATGGAAGCTCACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCAAGATACCTCTCTCGTATTCAGTTGTGTC</genome_strand>
        <mrna_strand>CCGGTATGAC-T-ATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCATGCAGAG....................................................................................................GAGCGACTCTGGTGTTCACGGGGTGCAGTTTATCGTTCAGTCAACTGCAAAG.......................................................................................GATCCCAAATACATTGACACAAGAGTGGAGTTATTTATGAAGATGTTTGAGAGCAAGCTTTATGAGATGACTAGTGATGAATTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATGTCAATGCACTTATTGATATGAAGCTTGAGAAACACAAGAATTTACGGGAGGAATCTCGGTTTTACTGGAGGGAGATCTCAGATGGGACCCTCAAGTTTGATAGACGAGACCGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCGCGTTAAAGCAACTGACTCAAAAGGAGCTGACAGATTTCTTCGATGAATATATTAAAGTCGGTGTTCCTCGGAAGAAGGCCTTAAGTGTCAGAGTCTATGGAAGCTCACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAACAGTTGATCTGCAAGATACCTCTCTCGTATTCAGTTGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E276395" ref_strand="+" ref_description="SGN-E276395 [cLEN-17-K2]">
      <seq>cttccaccagcttagatcagtcgagcaacttggttatatcactgtgctcatgcagaggagcgactctggtgttcacggggtgcagtttatcgttcagtcaactgcaaaggatcccaaatacattgacacaagagtggagttatttatgaagatgtttgagagcaagctttatgagatgactagtgatgaattcaagaataatgtcaatgcacttattgatatgaagcttgagaaacacaagaatttacgggaggaatctcggttttactggagggagatctcagatgggaccctcaagtttgatagacgaaaccgtgagattgtcgcgttaaagcaactgactcaaaaggagctgacagatttcttcgatgaatatattaaagtcggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="12523" stop="15830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12823" g_stop="12879" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12880" i_stop="12979" i_length="100">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12980" g_stop="13031" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="109" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13032" i_stop="13118" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13119" g_stop="13205" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="196" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13206" i_stop="14696" i_length="1491">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14697" g_stop="14819" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="319" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14820" i_stop="15459" i_length="640">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.641" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15460" g_stop="15530" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="390" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E276395" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12823" e_stop="12879"/>
          <exon e_start="12980" e_stop="13031"/>
          <exon e_start="13119" e_stop="13205"/>
          <exon e_start="14697" e_stop="14819"/>
          <exon e_start="15460" e_stop="15530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCATGCAGAGGTATGTAGTCTGTCTTTTACTGAACACTGTTCGGCAAGTTGGCTATTCCTCCTTAACAAGTTTTGTTTTCACTTAAAGTGGACTAACATTCTCTTTCTAGGAGCGACTCTGGTGTTCACGGGGTGCAGTTTATCGTTCAGTCAACTGCAAAGGTAAAGATATTTTATCATAGGTACTGTGGAAGGAAATAAGATCGGGCATTTATAGATTATGACAAATCTACTGGTTGAGTTTGGCAGGATCCCAAATACATTGACACAAGAGTGGAGTTATTTATGAAGATGTTTGAGAGCAAGCTTTATGAGATGACTAGTGATGAATTCAAGGTGAGCTTAATAACACTTGTGCTTCTTTTTCTAGCGATGAAAGGAACTTGTAGCTACTAAATTAGTCTCAATATTGTCAGGAAGGTTCAGTAAGTTTTGGGGTTTAATCTTGGGACTTGGCTCTTAAGGATAATCCTAATCCACAAAGTTGACAGCTTCATTTCTTATCAGGCCGTAACGGATTATTATTATGTACTTTTGATAACTCAAATTATTATCACTGGCGAAAGGGAAAATAACCATTGACATAGCACAAAGATGGTATAACCATACTATGTGGATTTTCATCAGCCCTTCAAAAAAACCATTCAACTGTATATAATATGGAATAGAACTAAAAGGAGCTCTTGCTCTCCAAACTGGAGTGCTATGTTGCACTTTCTTCTGGTTTGAGAAGGAAATCTTCAGAACGGAGTTTAAATCCCTTTAAAGAGTTTTTGTTTGTTCCCTATAAATCAGCCAAATGATGCATCCAGGCGAGACTTTCAACGGCTCTTTTTCCGTTGGGACCTTTGCGATCTCAAACTAGCCTGTGCTTCCTCTTTACCCAAAACTAGTCTGTGCTCCTCATGGACGATTGAAATAGTCCATGTCTTCTCTATTTGCCGTACAAAAACATCAACTAACTCCTCACATTGTGGGCATGAGTATAGGCACTCCTAGCTCACATAATCAGAGGGTGCCACCTAGGGATGGCAATGCGGCGGATGCAGGGTGGGGTGGGTTCAAGACTATGTGGGGCGGCTTGAAGTGGTTTCTTTTAAAAACTAATGTGGTGCAGGGCGGATTGTGGGTATATGTAATTTTATGTGAGTTCAAACTTAATTTTAAAACTTTTTACATGTTATAAGAGTGATAAAACATTATTTATTTAGATAATTTCTTTAAATTTTACATGTTTCCCAATTGACCTCCAAAAAATAAATTCTTAAGTTACTATCCTATTTAATTAATACAACTTAATGGAAAAATGAATTTGTTTTTATGAATTTTATTTTTTGTATCAAACTTAACTATAAGAAGAAAATATTAATTTAATTATGTGGGGTGGGTTTCATGCGCGTCTGGTCTATGCGGGGCGGGTTGAAAATGAAAAAAATTGTCATGTAGGGTGGGGCGGGAAGGATTTTAAACTTTGTGGGTTAAGCTCAACCCACCCCGCCCCCATTGCCATCCCTTGCGCCACCCTTTTAGGAGTCTTTGACTTCCATGTGGCTCCATGTTTTGACTCATCATAATTGCTTACATTATCACCGTTTTGTTTCGTGAAAAGCTTCATTGTTGTTGCCCCCCCCCCCCCCCCCCACTCTATAATAAAGCACTCCGGATTGTATACTTAGCTAGCTACTGTTGCTTATTAATTAATAGGATGTAGGTTTTGTCAAAGTTTTCGTGTCTGCAGTACATGGTGGCTTACTGTTATCCGTCTATACTTTGATAACTTTCCAGTATAGCTTTCTGGTCCCTAACTTTTATCCATTTATGATACAGAATAATGTCAATGCACTTATTGATATGAAGCTTGAGAAACACAAGAATTTACGGGAGGAATCTCGGTTTTACTGGAGGGAGATCTCAGATGGGACCCTCAAGTTTGATAGACGAGACCGTGAGGTATGAAAATTGCTACACTCATGTAAAGAATCACTTCCATTTCATGAGCATTTGTCAGAGTTAATGACTCTACTTCTTTATGTTTTGTTTTTGCACAAAGTGAGACTAAACTGATGTAAAAGGAATAGGTCAAATGTATGACATCACCCTATTATGTAGAGTTCTTCTGTAGGTTTTTACCTTTTTGACCACATAATAATAACAACATACATAGTGTAATCCCACATGTGGGGTTTGGGGAGAGTACGGTGTATACAAACCTTATCCCTACCTTGGGAGGTAGTGAGGTTGTTTGCTATAGACCCTCGGCTGAAGGAAAAGCATATCAAAATGTACTAGTGCTATTGTTATTTCGGTAGAGTCCTTTTTTTTTAATTCTAGAAATGTATGCATTTTGAGTCACTTTTGACTGTTGTTAGTGGCTCACGCCGAAAACCTATAATTTATTCCGGTAATTGATGTCATTTACAGTAATTTAAGTATGGATCAGTCTGTGGCTTGTGTCTGGTCAGCAGCCTATCTTACTGTCCTTTTCGTTTCCCGTCTGGTTTTTCATGACTGCTGAAAGAAATTCAAAACATTTCCACAATCATAGGGGGAAAATGTATCTAATCAGTTGTCAATGATATTGATGAAACAGATTGTCGCGTTAAAGCAACTGACTCAAAAGGAGCTGACAGATTTCTTCGATGAATATATTAAAGTCGGTGT</genome_strand>
        <mrna_strand>CTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCATGCAGAG....................................................................................................GAGCGACTCTGGTGTTCACGGGGTGCAGTTTATCGTTCAGTCAACTGCAAAG.......................................................................................GATCCCAAATACATTGACACAAGAGTGGAGTTATTTATGAAGATGTTTGAGAGCAAGCTTTATGAGATGACTAGTGATGAATTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATGTCAATGCACTTATTGATATGAAGCTTGAGAAACACAAGAATTTACGGGAGGAATCTCGGTTTTACTGGAGGGAGATCTCAGATGGGACCCTCAAGTTTGATAGACGAAACCGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCGCGTTAAAGCAACTGACTCAAAAGGAGCTGACAGATTTCTTCGATGAATATATTAAAGTCGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E370313" ref_strand="-" ref_description="SGN-E370313 [TUS-28-K13]">
      <seq>atgtcaatgcacttattgatatgaagcttgagaaacacaagaatttacgggaggaatctcggttttactggagggagatctcagatgggaccctcaagtttgatagacgagaccgtgagattgtcgcgttaaagcaactgactcaaaaggagctgacagatttcttcgatgaatatattaaagtcggtgttcctcggaagaaggccttaagtgtcagagtctatggaagctcacattcttctcaattccaagcacataagaatgagcagatggaaccaaatgcagttcagatagaagaaatatttagctttcgacgatctcggcctctttatagttcattcaaaggaggctttggtcatgtgagattgtaagaggtcgcatagcagctcgagaagccccccaatgcagttgatatgttgcgttagcgagtccattacagaagcagttgatttgcaagatacctctttcgtattcagttgtgtcaattagtcagttgtacgagggctcgtggtaggggtgtgagtttaattgctcaactgatttgatgatgtactgcttagagatttggaagaagtgaatgtatactgtgacaccaatttttgttttgattgctgaatataattgatcagaagacaagaagtgacatgaattagacctgaaaggaaaattattcattcatggtgttgatgggataaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="14401" stop="61124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14701" g_stop="14819" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14820" i_stop="15459" i_length="640">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.641" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15460" g_stop="16047" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="707" r_length="588" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16048" i_stop="16108" i_length="61">
            <donor d_prob="0.702" d_score="0.90"/>
            <acceptor a_prob="0.176" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16109" g_stop="16118" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="717" r_length="10" r_score="0.400"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E370313" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370313" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14701" e_stop="14819"/>
          <exon e_start="15460" e_stop="16047"/>
          <exon e_start="16109" e_stop="16118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCAATGCACTTATTGATATGAAGCTTGAGAAACACAAGAATTTACGGGAGGAATCTCGGTTTTACTGGAGGGAGATCTCAGATGGGACCCTCAAGTTTGATAGACGAGACCGTGAGGTATGAAAATTGCTACACTCATGTAAAGAATCACTTCCATTTCATGAGCATTTGTCAGAGTTAATGACTCTACTTCTTTATGTTTTGTTTTTGCACAAAGTGAGACTAAACTGATGTAAAAGGAATAGGTCAAATGTATGACATCACCCTATTATGTAGAGTTCTTCTGTAGGTTTTTACCTTTTTGACCACATAATAATAACAACATACATAGTGTAATCCCACATGTGGGGTTTGGGGAGAGTACGGTGTATACAAACCTTATCCCTACCTTGGGAGGTAGTGAGGTTGTTTGCTATAGACCCTCGGCTGAAGGAAAAGCATATCAAAATGTACTAGTGCTATTGTTATTTCGGTAGAGTCCTTTTTTTTTAATTCTAGAAATGTATGCATTTTGAGTCACTTTTGACTGTTGTTAGTGGCTCACGCCGAAAACCTATAATTTATTCCGGTAATTGATGTCATTTACAGTAATTTAAGTATGGATCAGTCTGTGGCTTGTGTCTGGTCAGCAGCCTATCTTACTGTCCTTTTCGTTTCCCGTCTGGTTTTTCATGACTGCTGAAAGAAATTCAAAACATTTCCACAATCATAGGGGGAAAATGTATCTAATCAGTTGTCAATGATATTGATGAAACAGATTGTCGCGTTAAAGCAACTGACTCAAAAGGAGCTGACAGATTTCTTCGATGAATATATTAAAGTCGGTGTTCCTCGGAAGAAGGCCTTAAGTGTCAGAGTCTATGGAAGCTCACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCAAGATACCTCTCTCGTATTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTAGGCGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTTGATGGGATAAATAAACTACAATGTACTTCAGTTTTTTTTTTTTTTGTTACTTAAAAATCTTCTTGATGTTACTAGTGTATTAGGCAAACTTAT</genome_strand>
        <mrna_strand>ATGTCAATGCACTTATTGATATGAAGCTTGAGAAACACAAGAATTTACGGGAGGAATCTCGGTTTTACTGGAGGGAGATCTCAGATGGGACCCTCAAGTTTGATAGACGAGACCGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCGCGTTAAAGCAACTGACTCAAAAGGAGCTGACAGATTTCTTCGATGAATATATTAAAGTCGGTGTTCCTCGGAAGAAGGCCTTAAGTGTCAGAGTCTATGGAAGCTCACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATTTGCAAGATACCTCTTTCGTATTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTAGGGGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTTTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTTGATGGGATAAAAAAAAAAAAAA.............................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E351940" ref_strand="+" ref_description="SGN-E351940 [cTOS-8-H18]">
      <seq>tcagatgggaccctcaagtttgatagacgagaccgtgagattgtcgcgttaaagcaactgactcaaaaggagctgacagatttcttcgatgaatatattaaagtcggtgttcctcggaagaaggccttaagtgtcagagtctatggaagctcacattcttctcaattccaagcacataagaatgagcagatggaaccaaatgcagttcagatagaagaaatatttagctttcgacgatctcggcctctttatagttcattcaaaggaggctttggtcatgtgagattgtaagaggtcgcatagcagctcgagaagccccccaatgcagttgatatgttgcgttagcgagtccattacagaagcagttgatctgcaagatacctctctcgtattcagttgtgtcaattagtcagttgtacgagggctcgtggtaggcgtgtgagtttaattgctcaactgatttgatgatgtactgcttagagatttggaagaagtgaatgtatactgtgacaccaatttctgttttgattgctgaatataattgatcagaagacaagaagtgacatgaattagacctgaaaggaaaattattcattcatggtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="14481" stop="16324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14781" g_stop="14819" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14820" i_stop="15459" i_length="640">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.641" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15460" g_stop="16034" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="614" r_length="575" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E351940" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14781" e_stop="14819"/>
          <exon e_start="15460" e_stop="16034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATGGGACCCTCAAGTTTGATAGACGAGACCGTGAGGTATGAAAATTGCTACACTCATGTAAAGAATCACTTCCATTTCATGAGCATTTGTCAGAGTTAATGACTCTACTTCTTTATGTTTTGTTTTTGCACAAAGTGAGACTAAACTGATGTAAAAGGAATAGGTCAAATGTATGACATCACCCTATTATGTAGAGTTCTTCTGTAGGTTTTTACCTTTTTGACCACATAATAATAACAACATACATAGTGTAATCCCACATGTGGGGTTTGGGGAGAGTACGGTGTATACAAACCTTATCCCTACCTTGGGAGGTAGTGAGGTTGTTTGCTATAGACCCTCGGCTGAAGGAAAAGCATATCAAAATGTACTAGTGCTATTGTTATTTCGGTAGAGTCCTTTTTTTTTAATTCTAGAAATGTATGCATTTTGAGTCACTTTTGACTGTTGTTAGTGGCTCACGCCGAAAACCTATAATTTATTCCGGTAATTGATGTCATTTACAGTAATTTAAGTATGGATCAGTCTGTGGCTTGTGTCTGGTCAGCAGCCTATCTTACTGTCCTTTTCGTTTCCCGTCTGGTTTTTCATGACTGCTGAAAGAAATTCAAAACATTTCCACAATCATAGGGGGAAAATGTATCTAATCAGTTGTCAATGATATTGATGAAACAGATTGTCGCGTTAAAGCAACTGACTCAAAAGGAGCTGACAGATTTCTTCGATGAATATATTAAAGTCGGTGTTCCTCGGAAGAAGGCCTTAAGTGTCAGAGTCTATGGAAGCTCACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCAAGATACCTCTCTCGTATTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTAGGCGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTTGATGGGATA</genome_strand>
        <mrna_strand>TCAGATGGGACCCTCAAGTTTGATAGACGAGACCGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCGCGTTAAAGCAACTGACTCAAAAGGAGCTGACAGATTTCTTCGATGAATATATTAAAGTCGGTGTTCCTCGGAAGAAGGCCTTAAGTGTCAGAGTCTATGGAAGCTCACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCAAGATACCTCTCTCGTATTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTAGGCGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E397906" ref_strand="+" ref_description="SGN-E397906 [TUS-35-I22]">
      <seq>tttttttttttttttttttttttttatcccatcaacaccatgaatgaataattttcctttcaggtctaattcatgtcacttcttgtcttctgatcaattatattcagcaatcaaaacaaaaattggtgtcacagtatacattcacttcttccaaatctctaagcagtacatcatcaaatcagttgagcaattaaactcacacgcctaccacgagccctcgtacaactgactaattgacacaactgaatacaaaagaggtatcttgcaaatcaactgcttctgtaatggactcgctaacgcaacatatcaactgcattggggggcttctcgagctgctatgcgacctcttacaatctcacatgaccaaagcctcctttgaatgaactataaagaggccgaaatcgtcaaaagctaaatatttcttctatctgaactgcatttggttccatctgctcattcttagggggggggaattgaaaaaaatgtgagcttccatagactctgacacttaaggccttcttccgaggaacaccgactttaatatattcatcgaaaaaaatctgtccgctcctttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="61124" stop="15185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16058" g_stop="15483" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E397906" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16058" e_stop="15483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAAGTACATTGTAGTTTATTTATCCCATCAACACCATGAATGAATAATTTTCCTTTCAGGTCTAATTCATGTCACTTCTTGTCTTCTGATCAATTATATTCAGCAATCAAAACAGAAATTGGTGTCACAGTATACATTCACTTCTTCCAAATCTCTAAGCAGTACATCATCAAATCAGTTGAGCAATTAAACTCACACGCCTACCACGAGCCCTCGTACAACTGACTAATTGACACAACTGAATACGAGAGAGGTATCTTGCAGATCAACTGCTTCTGTAATGGACTCGCTAACGCAACATATCAACTGCATTGGGGGGCTTCTCGAGCTGCTATGCGACCTCTTACAATCTCACATGACCAAAGCCTCCTTTGAATGAACTATAAAGAGGCCGAGATCGTCGAAAGCTAAATATTTCTTCTATCTGAACTGCATTTGGTTCCATCTGCTCATTCTTATGTGCTTGGAATTGAGAAGAATGTGAGCTTCCATAGACTCTGACACTTAAGGCCTTCTTCCGAGGAACACCGACTTTAATATATTCATCG-AAGAAATCTGTCAGCTCCTTTTGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTATCCCATCAACACCATGAATGAATAATTTTCCTTTCAGGTCTAATTCATGTCACTTCTTGTCTTCTGATCAATTATATTCAGCAATCAAAACAAAAATTGGTGTCACAGTATACATTCACTTCTTCCAAATCTCTAAGCAGTACATCATCAAATCAGTTGAGCAATTAAACTCACACGCCTACCACGAGCCCTCGTACAACTGACTAATTGACACAACTGAATACAAAAGAGGTATCTTGCAAATCAACTGCTTCTGTAATGGACTCGCTAACGCAACATATCAACTGCATTGGGGGGCTTCTCGAGCTGCTATGCGACCTCTTACAATCTCACATGACCAAAGCCTCCTTTGAATGAACTATAAAGAGGCCGAAATCGTCAAAAGCTAAATATTTCTTCTATCTGAACTGCATTTGGTTCCATCTGCTCATTCTTAGGGGGGGGGAATTGAAAAAAATGTGAGCTTCCATAGACTCTGACACTTAAGGCCTTCTTCCGAGGAACACCGACTTTAATATATTCATCGAAAAAAATCTGTCCGCTCCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E243466" ref_strand="+" ref_description="SGN-E243466 [cLED-34-B17]">
      <seq>acattcttctcaattccaagcacataagaatgagcagatggaaccaaatgcagttcagatagaagaaatatttagctttcgacgatctcggcctctttatagttcattcaaaggaggctttggtcatgtgagattgtaagaggtcgcatagcagctcgagaagccccccaatgcagttgatatgttgcgttagcgagtccattacagaagcagttgatctgcaagatacctctctcgtattcagttgtgtcaattagtcagttgtacgagggctcgtggtacgcgtgtgagtttaattgctcaactgatttgatgatgtactgcttagagatttggaagaagtgaatgtatactgtgacaccaatttctgttttgattgctgaatataattgatcagaagacaagaagtgacatgaattagacctgaaaggaaaattattcattcatggtgttgatgggataaataaactacaatgtacttcagttttttttttttttgttacttaaaaatcttcttgatgttactagtgtattaggcaaacttatcaggtgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="15273" stop="16429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15573" g_stop="16129" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E243466" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15573" e_stop="16129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCAAGATACCTCTCTCGTATTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTAGGCGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTTGATGGGATAAATAAACTACAATGTACTTCAGTTTTTTTTTTTTTTGTTACTTAAAAATCTTCTTGATGTTACTAGTGTATTAGGCAAACTTATCAGGTGAATCT</genome_strand>
        <mrna_strand>ACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCAAGATACCTCTCTCGTATTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTACGCGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTTGATGGGATAAATAAACTACAATGTACTTCAGTTTTTTTTTTTTTTGTTACTTAAAAATCTTCTTGATGTTACTAGTGTATTAGGCAAACTTATCAGGTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E236376" ref_strand="+" ref_description="SGN-E236376 [cLED-13-E4]">
      <seq>acattcttctcaattccaagcacataagaatgagcagatggaaccaaatgcagttcagatagaagaaatatttagctttcgacgatctcggcctctttatagttcattcaaaggaggctttggtcatgtgagattgtaagaggtcgcatagcagctcgagaagccccccaatgcagttgatatgttgcgttagcgagtccattacagaagcagttgatctgcaagatacctctctcgtattcagttgtgtcaattagtcagttgtacgagggctcgtggtaggcgtgtgagtttaattgctcaactgatttgatgatgtactgcttagagatttggaagaagtgaatgtatactgtgacaccaatttctgttttgattgctgaatataattgatcagaagacaagaagtgacatgaattagacctgaaaggaaaattattcattcatggtgttgatgggataaataaactacaatgtacttcagttttttttttttttgttacttaaaaatcttcttgatgttactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="15273" stop="16401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15573" g_stop="16101" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E236376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15573" e_stop="16101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCAAGATACCTCTCTCGTATTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTAGGCGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTTGATGGGATAAATAAACTACAATGTACTTCAGTTTTTTTTTTTTTTGTTACTTAAAAATCTTCTTGATGTTACTAGT</genome_strand>
        <mrna_strand>ACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCAAGATACCTCTCTCGTATTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTAGGCGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTTGATGGGATAAATAAACTACAATGTACTTCAGTTTTTTTTTTTTTTGTTACTTAAAAATCTTCTTGATGTTACTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E240701" ref_strand="+" ref_description="SGN-E240701 [cLED-21-H20]">
      <seq>acattcttctcaattccaagcacataagaatgagcagatggaaccaaatgcagttcagatagaagaaatatttagctttcgacgatctcggcctctttatagttcattcaaaggaggctttggtcatgtgagattgtaagaggtcgcatagcagctcgagaagccccccaatgcagttgatatgttgcgttagcgagtccattacagaagcagttgatctgcaagatacctctctcgtattcagttgtgtcaattagtcagttgtacgagggctcgtggtaggcgtgtgagtttaattgctcaactgatttgatgatgtactgcttagagatttggaagaagtgaatgtatactgtgacaccaatttctgttttgattgctgaatataattgatcagaagacaagaagtgacatgaattagacctgaaaggaaaattattcattcatggtgttgatgggataaataaactacaatgtacttcagtttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="15273" stop="16368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15573" g_stop="16068" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E240701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15573" e_stop="16068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCAAGATACCTCTCTCGTATTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTAGGCGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTTGATGGGATAAATAAACTACAATGTACTTCAGTTTTTTTTTTTT</genome_strand>
        <mrna_strand>ACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCAAGATACCTCTCTCGTATTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTAGGCGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTTGATGGGATAAATAAACTACAATGTACTTCAGTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E228855" ref_strand="+" ref_description="SGN-E228855 [cLEL-29-F6]">
      <seq>tttttttttttttttttatttatcccatcaacaccatgaatgaataattttcctttcaggcctaattcatgtcacttcttgtcttctgatcaattatattcagcaatcaaaacagaaattggtgtcacagtatacattcacttcttccaaatctctaagcagtacatcatcaaatcagttgagcaattaaactcacacgcctaccacgagccctcgtacaactgactaattgacacaactgaatacgagagaggtatcttgcagatcaactgcttctgtaatggactcgttaacgcaacatatcaactgcattggggggcttctcgagctgctatgcgacctcttacaatcttacatgaccaaagcctcctttgaatgaactataaagaggccgagatcgtcgaaagctaaatatttcttctatctgaactgcatttggttccatctgctcattcttatgtgcttggaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="61120" stop="15283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16054" g_stop="15583" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E228855" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16054" e_stop="15583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTACATTGTAGTTTATTTATCCCATCAACACCATGAATGAATAATTTTCCTTTCAGGTCTAATTCATGTCACTTCTTGTCTTCTGATCAATTATATTCAGCAATCAAAACAGAAATTGGTGTCACAGTATACATTCACTTCTTCCAAATCTCTAAGCAGTACATCATCAAATCAGTTGAGCAATTAAACTCACACGCCTACCACGAGCCCTCGTACAACTGACTAATTGACACAACTGAATACGAGAGAGGTATCTTGCAGATCAACTGCTTCTGTAATGGACTCGCTAACGCAACATATCAACTGCATTGGGGGGCTTCTCGAGCTGCTATGCGACCTCTTACAATCTCACATGACCAAAGCCTCCTTTGAATGAACTATAAAGAGGCCGAGATCGTCGAAAGCTAAATATTTCTTCTATCTGAACTGCATTTGGTTCCATCTGCTCATTCTTATGTGCTTGGAATTG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTATTTATCCCATCAACACCATGAATGAATAATTTTCCTTTCAGGCCTAATTCATGTCACTTCTTGTCTTCTGATCAATTATATTCAGCAATCAAAACAGAAATTGGTGTCACAGTATACATTCACTTCTTCCAAATCTCTAAGCAGTACATCATCAAATCAGTTGAGCAATTAAACTCACACGCCTACCACGAGCCCTCGTACAACTGACTAATTGACACAACTGAATACGAGAGAGGTATCTTGCAGATCAACTGCTTCTGTAATGGACTCGTTAACGCAACATATCAACTGCATTGGGGGGCTTCTCGAGCTGCTATGCGACCTCTTACAATCTTACATGACCAAAGCCTCCTTTGAATGAACTATAAAGAGGCCGAGATCGTCGAAAGCTAAATATTTCTTCTATCTGAACTGCATTTGGTTCCATCTGCTCATTCTTATGTGCTTGGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E223621" ref_strand="+" ref_description="SGN-E223621 [cLEL-14-J23]">
      <seq>tttttttttatatttttatttatcccatcaacaccatgaatgaataattttcctttcaggtctaattcatgtcacttcttgtcttctgatcaattatattcagcaatcaaaacagaaattggtgtcacagtatacattcacttcttgcaaatctctaagcagtacatcgtcaaatcagttgagcaattaaactcacacgcctaccacgagccctcgtacaactgactaattgacacaactgaatacgagagaggtatcttgcagatcaactgcttctgtaatggactcgctaacgcaacatatcaactgcattggggggcttctcgagctgctatgcgacctcttacaatctcacatgaccaaagccttctttgaatgaactataaagaggccgagatcgtccaaagctaaatatttcttctatctgaactgcatttggttccatctgctcattcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="16340" stop="15296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16040" g_stop="15596" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="459" r_length="445" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E223621" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16040" e_stop="15596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTATCCCATCAACACCATGAATGAATAATTTTCCTTTCAGGTCTAATTCATGTCACTTCTTGTCTTCTGATCAATTATATTCAGCAATCAAAACAGAAATTGGTGTCACAGTATACATTCACTTCTTCCAAATCTCTAAGCAGTACATCATCAAATCAGTTGAGCAATTAAACTCACACGCCTACCACGAGCCCTCGTACAACTGACTAATTGACACAACTGAATACGAGAGAGGTATCTTGCAGATCAACTGCTTCTGTAATGGACTCGCTAACGCAACATATCAACTGCATTGGGGGGCTTCTCGAGCTGCTATGCGACCTCTTACAATCTCACATGACCAAAGCCTCCTTTGAATGAACTATAAAGAGGCCGAGATCGTCGAAAGCTAAATATTTCTTCTATCTGAACTGCATTTGGTTCCATCTGCTCATTCTTAT</genome_strand>
        <mrna_strand>TTTATTTATCCCATCAACACCATGAATGAATAATTTTCCTTTCAGGTCTAATTCATGTCACTTCTTGTCTTCTGATCAATTATATTCAGCAATCAAAACAGAAATTGGTGTCACAGTATACATTCACTTCTTGCAAATCTCTAAGCAGTACATCGTCAAATCAGTTGAGCAATTAAACTCACACGCCTACCACGAGCCCTCGTACAACTGACTAATTGACACAACTGAATACGAGAGAGGTATCTTGCAGATCAACTGCTTCTGTAATGGACTCGCTAACGCAACATATCAACTGCATTGGGGGGCTTCTCGAGCTGCTATGCGACCTCTTACAATCTCACATGACCAAAGCCTTCTTTGAATGAACTATAAAGAGGCCGAGATCGTCCAAAGCTAAATATTTCTTCTATCTGAACTGCATTTGGTTCCATCTGCTCATTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E228951" ref_strand="+" ref_description="SGN-E228951 [cLEL-29-F6]">
      <seq>tttttttttttttttttatttatcccatcaacaccatgaatgaataattttcctttcaggtctaattcatgtcacttcttgtcttctgatcaattatattcagcaatcaaaacagaaattggtgtcacagtatacattcacttcttccaaatctctaagcagtacatcatcaaatcagttgagcaattaaactcacacgcctaccacgagccctcgtacaactgactaattgacacaactgaatacgagagaggtatcttgcagatcaactgcttctgtaatggactcgctaacgcaacatatcaactgcattggggggcttctcgagctgctatgcgacctcttacaatctcacatgaccaaagcctcctttgaatgaactataaagaggccgagatcgtcgaaagctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="61120" stop="15343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16054" g_stop="15643" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E228951" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16054" e_stop="15643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTACATTGTAGTTTATTTATCCCATCAACACCATGAATGAATAATTTTCCTTTCAGGTCTAATTCATGTCACTTCTTGTCTTCTGATCAATTATATTCAGCAATCAAAACAGAAATTGGTGTCACAGTATACATTCACTTCTTCCAAATCTCTAAGCAGTACATCATCAAATCAGTTGAGCAATTAAACTCACACGCCTACCACGAGCCCTCGTACAACTGACTAATTGACACAACTGAATACGAGAGAGGTATCTTGCAGATCAACTGCTTCTGTAATGGACTCGCTAACGCAACATATCAACTGCATTGGGGGGCTTCTCGAGCTGCTATGCGACCTCTTACAATCTCACATGACCAAAGCCTCCTTTGAATGAACTATAAAGAGGCCGAGATCGTCGAAAGCTAAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTATTTATCCCATCAACACCATGAATGAATAATTTTCCTTTCAGGTCTAATTCATGTCACTTCTTGTCTTCTGATCAATTATATTCAGCAATCAAAACAGAAATTGGTGTCACAGTATACATTCACTTCTTCCAAATCTCTAAGCAGTACATCATCAAATCAGTTGAGCAATTAAACTCACACGCCTACCACGAGCCCTCGTACAACTGACTAATTGACACAACTGAATACGAGAGAGGTATCTTGCAGATCAACTGCTTCTGTAATGGACTCGCTAACGCAACATATCAACTGCATTGGGGGGCTTCTCGAGCTGCTATGCGACCTCTTACAATCTCACATGACCAAAGCCTCCTTTGAATGAACTATAAAGAGGCCGAGATCGTCGAAAGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E223266" ref_strand="+" ref_description="SGN-E223266 [cLEL-14-J23]">
      <seq>tttttttttttttttttatttatcccatcaacaccatgaatgaataattttcctttcaggtctaattcatgtcacttcttgtcttctgatcaattatattcagcaatcaaaacagaaattggtgtcacagtatacattcacttcttccaaatctctaagcagtacatcatcaaatcagttgagcaattaaactcacacgcctaccacgagccctcgtacaactgactaattgacacaactgaatacgagagaggtatcttgcagatcaactgcttctgtaatggactcgctaacgcaacatatcaactgcattggggggcttctcgagctgctatgcgacctcttacaatctcacatgaccaaagcctcctttgaatgaactataaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="61120" stop="15366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16054" g_stop="15666" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E223266" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16054" e_stop="15666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTACATTGTAGTTTATTTATCCCATCAACACCATGAATGAATAATTTTCCTTTCAGGTCTAATTCATGTCACTTCTTGTCTTCTGATCAATTATATTCAGCAATCAAAACAGAAATTGGTGTCACAGTATACATTCACTTCTTCCAAATCTCTAAGCAGTACATCATCAAATCAGTTGAGCAATTAAACTCACACGCCTACCACGAGCCCTCGTACAACTGACTAATTGACACAACTGAATACGAGAGAGGTATCTTGCAGATCAACTGCTTCTGTAATGGACTCGCTAACGCAACATATCAACTGCATTGGGGGGCTTCTCGAGCTGCTATGCGACCTCTTACAATCTCACATGACCAAAGCCTCCTTTGAATGAACTATAAAGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTATTTATCCCATCAACACCATGAATGAATAATTTTCCTTTCAGGTCTAATTCATGTCACTTCTTGTCTTCTGATCAATTATATTCAGCAATCAAAACAGAAATTGGTGTCACAGTATACATTCACTTCTTCCAAATCTCTAAGCAGTACATCATCAAATCAGTTGAGCAATTAAACTCACACGCCTACCACGAGCCCTCGTACAACTGACTAATTGACACAACTGAATACGAGAGAGGTATCTTGCAGATCAACTGCTTCTGTAATGGACTCGCTAACGCAACATATCAACTGCATTGGGGGGCTTCTCGAGCTGCTATGCGACCTCTTACAATCTCACATGACCAAAGCCTCCTTTGAATGAACTATAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E208264" ref_strand="-" ref_description="SGN-E208264 [cLEC-37-B24]">
      <seq>ttcagttgtgtcaattagtcagttgtacgagggctcgtggtaggcgtgtgagtttaattgctcaactgatttgatgatgtactgcttagagatttggaagaagtgaatgtatactgtgacaccaatttctgttttgattgctgaatataattgatcagaagacaagaagtgacatgaattagacctgaaaggaaaattattcattcatggtgttgatgggataaataaactacaatgtacttcagttttttttttttttgttacttaaaaatcttcttgatgttactagtgtattaggcaaacttatcaggtgaatctgtccaaatttttaatggatagaattatttgatatttgtgttggcggtaggttgtcggtttttggagaattagttggaagtgtataagttggtttgagcactacagttattaaaaaaaagatgtttagagataaaaaaaaaaaaaaaaaactcgagactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="15512" stop="27258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15812" g_stop="16255" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16256" i_stop="17031" i_length="776">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17032" g_stop="17070" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="479" r_length="35" r_score="0.795"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E208264" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208264" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15812" e_stop="16255"/>
          <exon e_start="17032" e_stop="17070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTAGGCGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTTGATGGGATAAATAAACTACAATGTACTTCAGTTTTTTTTTTTTTTGTTACTTAAAAATCTTCTTGATGTTACTAGTGTATTAGGCAAACTTATCAGGTGAATCTGTCCAAATTTTTAATGGATAGAATTATTTGATATTTGTGTTGGCGGTAGGTTGTCGGTTTTTGGAGAATTAGTTGGAAGTGTATAAGTTGGTTTGAGCACTACAGTTATTAAAAAAAAGATGTTTAGAGATAGTCATATGTGATGTTAGCTCTATGAGATCATAAAGATTAGTTTTTAACATGTAAATTGAGTATTCTCTCTCTAAGTACTAATTTTCCCTTTTTTCATAATGGTGGTATTTAGATTAGTTTATGTGTCTTCCATTTAGTAAACGTATGAATAAACTAAAAAAGTTCAATATTTACTATGCATAAATAGTATTACTTTCTGTGGATTAAATCACCCCTATGGCCCTACGTCGCTCCACCCCTGCCTCTACATTCCTACCAACACATGTATCAAGTAAATGTCCAATAGTTTTATTGACGAACTCCTTTCAAACCTATTTTTTAGCTTCACCTTTGCCTCTACCTTCCCGCAACATATATGTATATATGTGTGTATATATATATATATAATTTTTTTCAATTTTATTATATAAATAATATAATTTTTCATCGATAAAATCTTTTCAACCCTATTTGACTTCAACTACCTATCACTAACATAATACTAAGTAACTCTATCCATTCCTTTTTCTTTTTTCTTTAATTAGCGGATGACTTGCCTAAGGATTGAGAATTGAGGGATGACTTTTCACCCTCATGGACCACACACTATAGTAACCTTGTTTGTCCAATTTTGCGACCTATCACATTCTTAAACCAAATGCCAAGTCTTCCATTACTTGATTAAAAAGTCAAGTATTTACCGTTAATAAAGTGAGTTGAAATATCGTAAAATTTTGCACAATTCTTTTTATTTAATTTAGATGTAATTAGTTATTGCTCATAAATTATAGGAGATTAACAAAAAAGAAAAAGAAAACAAGATGACTAGG</genome_strand>
        <mrna_strand>TTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTAGGCGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTTGATGGGATAAATAAACTACAATGTACTTCAGTTTTTTTTTTTTTTGTTACTTAAAAATCTTCTTGATGTTACTAGTGTATTAGGCAAACTTATCAGGTGAATCTGTCCAAATTTTTAATGGATAGAATTATTTGATATTTGTGTTGGCGGTAGGTTGTCGGTTTTTGGAGAATTAGTTGGAAGTGTATAAGTTGGTTTGAGCACTACAGTTATTAAAAAAAAGATGTTTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGA-TAA-AAAAAA-AAAAAAAAAACTCGA-GACTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E237809" ref_strand="-" ref_description="SGN-E237809 [cLED-18-I14]">
      <seq>gttacttaaaaatcttcttgatgttactagtgtattaggcaaacttatcaggtgaatctgtccaaatttttaatggatagaattatttgatatttgtgttggcggtaggttgtcggtttttggagaattagttgaaagtgtataagttggtttgagcactacagttattaaaaaaaagatgtttagagatagtcatatgtgatgttagctctatgagatcataaagattagtttttaacatgtaaattgagtattctctctctaaaaaaaaaaaaaaaaaactcaagactagatctctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="15771" stop="61140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16071" g_stop="16335" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16336" i_stop="17031" i_length="696">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17032" g_stop="17070" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="301" r_length="36" r_score="0.590"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E237809" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237809" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16071" e_stop="16335"/>
          <exon e_start="17032" e_stop="17070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTTAAAAATCTTCTTGATGTTACTAGTGTATTAGGCAAACTTATCAGGTGAATCTGTCCAAATTTTTAATGGATAGAATTATTTGATATTTGTGTTGGCGGTAGGTTGTCGGTTTTTGGAGAATTAGTTGGAAGTGTATAAGTTGGTTTGAGCACTACAGTTATTAAAAAAAAGATGTTTAGAGATAGTCATATGTGATGTTAGCTCTATGAGATCATAAAGATTAGTTTTTAACATGTAAATTGAGTATTCTCTCTCTAAGTACTAATTTTCCCTTTTTTCATAATGGTGGTATTTAGATTAGTTTATGTGTCTTCCATTTAGTAAACGTATGAATAAACTAAAAAAGTTCAATATTTACTATGCATAAATAGTATTACTTTCTGTGGATTAAATCACCCCTATGGCCCTACGTCGCTCCACCCCTGCCTCTACATTCCTACCAACACATGTATCAAGTAAATGTCCAATAGTTTTATTGACGAACTCCTTTCAAACCTATTTTTTAGCTTCACCTTTGCCTCTACCTTCCCGCAACATATATGTATATATGTGTGTATATATATATATATAATTTTTTTCAATTTTATTATATAAATAATATAATTTTTCATCGATAAAATCTTTTCAACCCTATTTGACTTCAACTACCTATCACTAACATAATACTAAGTAACTCTATCCATTCCTTTTTCTTTTTTCTTTAATTAGCGGATGACTTGCCTAAGGATTGAGAATTGAGGGATGACTTTTCACCCTCATGGACCACACACTATAGTAACCTTGTTTGTCCAATTTTGCGACCTATCACATTCTTAAACCAAATGCCAAGTCTTCCATTACTTGATTAAAAAGTCAAGTATTTACCGTTAATAAAGTGAGTTGAAATATCGTAAAATTTTGCACAATTCTTTTTATTTAATTTAGATGTAATTAGTTATTGCTCATAAATTATAGGAGATTAACAAAAAAGAAAAAGAAAACAAGATGACTAGG</genome_strand>
        <mrna_strand>GTTACTTAAAAATCTTCTTGATGTTACTAGTGTATTAGGCAAACTTATCAGGTGAATCTGTCCAAATTTTTAATGGATAGAATTATTTGATATTTGTGTTGGCGGTAGGTTGTCGGTTTTTGGAGAATTAGTTGAAAGTGTATAAGTTGGTTTGAGCACTACAGTTATTAAAAAAAAGATGTTTAGAGATAGTCATATGTGATGTTAGCTCTATGAGATCATAAAGATTAGTTTTTAACATGTAAATTGAGTATTCTCTCTCTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-A-A-AAAAAAAAAAAAAACTCAAGACTAGATCTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E332236" ref_strand="+" ref_description="SGN-E332236 [cTOD-17-O13]">
      <seq>atcaatattacggaaatttctctacaagtgcaggttttattgatgcaagttgagattttgaacttaccctttactttcctttgttgtatttcggtgattcttgaaatacccatttgggattttggacttaaatcgtgttttttgagctattgagatttggggttgttaaactttgcgagaaaatggctgtgggcaaagcagatgaacctgtagagatctttacggctcgttctgataagagggagtacagaagaatagttcttcagaactctcttgaagttctactaatcactgatcctgaaacagacaagtgtgctgcttctatggaggtgtcagtggggtattacagtgatcctaagggactagaaggccttgctcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="16878" stop="17958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17178" g_stop="17488" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17489" i_stop="17586" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17587" g_stop="17658" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="383" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E332236" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17178" e_stop="17488"/>
          <exon e_start="17587" e_stop="17658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATATTACGGAAATTTCTCTACAAGTGCAGGTTTTATTGATGCAAGTTGAGATTTTGAACTTACCCTTTACTTTCATTTGTTGTATTTCGGTGATTCTTGAAATACCCATTTGGGATTTTGGACTTAAATCGTGTTTTTTGAGCTATTGAGATTTGGGGTTGTTAAACTTTGCGAGAAAATGGCTGTGGGCAAAGCAGATGAACCTGTAGAGATCTTTAAGGCTCGTTCTGATAAGAGGGAGTACAGAAGAATAGTTCTTCAGAACTCTCTTGAAGTTCTACTAATCACTGATCCTGAAACAGACAAGGTTAGTTGTTTTTGTGATTTTTTTTAATTTCAGAAATTTTATGAATTTTATTGAGTTGGGTTGTTTTACAAATGTATTTTTGTATGTTGTTGGATCAGTGTGCTGCTTCTATGGAGGTGTCAGTGGGGTATTACAGTGATCCTAAGGGTCTTGAAGGCCTTGCTCATTTT</genome_strand>
        <mrna_strand>ATCAATATTACGGAAATTTCTCTACAAGTGCAGGTTTTATTGATGCAAGTTGAGATTTTGAACTTACCCTTTACTTTCCTTTGTTGTATTTCGGTGATTCTTGAAATACCCATTTGGGATTTTGGACTTAAATCGTGTTTTTTGAGCTATTGAGATTTGGGGTTGTTAAACTTTGCGAGAAAATGGCTGTGGGCAAAGCAGATGAACCTGTAGAGATCTTTACGGCTCGTTCTGATAAGAGGGAGTACAGAAGAATAGTTCTTCAGAACTCTCTTGAAGTTCTACTAATCACTGATCCTGAAACAGACAAG..................................................................................................TGTGCTGCTTCTATGGAGGTGTCAGTGGGGTATTACAGTGATCCTAAGGGACTAGAAGGCCTTGCTCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E273098" ref_strand="+" ref_description="SGN-E273098 [cLEM-24-I3]">
      <seq>aagtgcaggttttattgatgcaagttgagattttgaacttaccctttgctttcatttgttgtatttcggtgattcttgaaatacccatttgggattttggacttaaatcgtgttttttgagctattgagatttggggttgttaaactttgcgagaaaatggctgtgggcaaagcagatgaacctgtagagatctttaaggctcgttctgataagagggagtacagaagaatagttcttcagaactctcttgaagttctactaatcactgatcctgaaacagacaagtgtgctgcttctatggaggtgtcagtggggtattacagtgatcctaagggtcttgaaggccttgctcattttcttgaacatatgctgttttatgcaagtgagaagtatcctgtggagaatagttactcaaaatacatcacccagcacggaggttccaccaatgcctttacatcttctgagcgcaccaacttttacttcgatatcaatgcagattgttttgaagaagcattggacagatttgcgcagttttttgtcaaaccattgatgtcacctgatgccacaacaagggaaataaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="16903" stop="23730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17203" g_stop="17488" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17489" i_stop="17586" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17587" g_stop="17662" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="362" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17663" i_stop="18394" i_length="732">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18395" g_stop="18462" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="430" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18463" i_stop="23203" i_length="4741">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23204" g_stop="23295" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="522" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23296" i_stop="23367" i_length="72">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23368" g_stop="23430" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="585" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E273098" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17203" e_stop="17488"/>
          <exon e_start="17587" e_stop="17662"/>
          <exon e_start="18395" e_stop="18462"/>
          <exon e_start="23204" e_stop="23295"/>
          <exon e_start="23368" e_stop="23430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGCAGGTTTTATTGATGCAAGTTGAGATTTTGAACTTACCCTTTACTTTCATTTGTTGTATTTCGGTGATTCTTGAAATACCCATTTGGGATTTTGGACTTAAATCGTGTTTTTTGAGCTATTGAGATTTGGGGTTGTTAAACTTTGCGAGAAAATGGCTGTGGGCAAAGCAGATGAACCTGTAGAGATCTTTAAGGCTCGTTCTGATAAGAGGGAGTACAGAAGAATAGTTCTTCAGAACTCTCTTGAAGTTCTACTAATCACTGATCCTGAAACAGACAAGGTTAGTTGTTTTTGTGATTTTTTTTAATTTCAGAAATTTTATGAATTTTATTGAGTTGGGTTGTTTTACAAATGTATTTTTGTATGTTGTTGGATCAGTGTGCTGCTTCTATGGAGGTGTCAGTGGGGTATTACAGTGATCCTAAGGGTCTTGAAGGCCTTGCTCATTTTCTTGGTAAGTAAGCTAGTGCATGACTCTAGGTCTTGAAGCAAGGACTAAGCTGCTTTTTTGGTTTCTGTTAATGATTGTGGTGTCCGGGCCAGCTTGCGCGTAACCGTATACCTGTTACCTCCCACCAGCTCAACTATTGGTGTTTATCTTGATGTAACTGGTAAAGTTGTTCTCACGTGGCCAAAAGGTCATGAGTTCAAGCGGTGGAAAGTGGAAACAACCTCTTGCAGAAATGCAGGGTAATACTGCGTAGAATAGACCCTTGTGGTCCAGCCCTTCACTAGACCTTGCATGAGCTTAGTGTACCCGGATCCCCTTTTTAAAAAAAATTCTACTGTTTCGTTTCTCCAATATTTTCACTATTGTATCTACTGTATTTCCTTTCCTACTGATTTTGATATGCTTGTTTTGAGATGAGGTTTTAGAAACAACCTCTCTACCTTCTCTAGACCCCACCTGAGTGACTACAGTGGGTATGATGTTTCCTGTAGCTTTGATTCTATGCACCAGTATTCTGCCAACATGGAAGGTGGTGAATCTTGGAGGGGTGGGAATTTTAACTTCTCTTAATGTGCAGCTGATGTGTTTTTGGTTAATTTCATGATCTTATTTCTTTGGTTTTTGTGAGTTAATTGCACCCTTTGTAAGTTATTCCATTCTACTGTATGCTACTTTAGTTTCACTTTCTTCCATGAGGCAAAAGTGCACACTGATTCATAATGTTTTAAACTGCAGAACATATGCTGTTTTATGCAAGTGAGAAGTATCCTGTGGAGAATAGTTACTCAAAATACATCACCCAGGTATCTTCTTTTATCCTATTAACAATTATGATTTACTTTTCCCTACTCATGTGAAATAGCTTCCCTTCTTCCCACCGTTTGCAATCTATCTTCTCTTCAGGACTTTTTGAGAGCTGATTATTGTCTGTGTTCTTATTTTTTATGTTGGGATACAACTTTGATCGTTTTTAGGGGTTCTTCTATTGAGCTTCGATGGTGATAAATGGTGGTAGTTTCACTATCTGCATATTCTTCAGTCGTTAACTTGCTAATTCAAGGTGACTTCTCCTCCCCGAAATTTGAGGGGAAGGTTAGAATGTGTTGAGAAGTCATCACCAACTTAATATCCAAGACACGTCGAAGATGAATCTAAAATATGCAGGAGTTGTAAAGAAATGAAGATCTCTAGAATGAGTGTTCTAGAGAGAGAAGTCTAGAAATATTCTAGAAAGGGAAGTTCTAGAAATAAGTAGTTGGGGGAACAATTTAGAATAGAGAAGAAATACCTTTAGTTAGATTCTTGCATCACCAGTTCACCACCTAAAACATAGACGTGGTTCATTTGAGATGTGTGTGTGCTCAAGTAAATATTGAGTGCTCAAGCAAGTAAGCAAGCAAGAAGAGAGTGATCGGGAGAAAAATAAGAGAACAAAGAGAGTTGCTAGAGTGTGAGGGCAAGAAAAATTGAGTGTAAGTATTATAAGATCGAAGCGGGTCTTTACCTTGCAATAATAAAATTCAAGTTATGAATAATGGTGCAAAATAATTATTAACAGAATGTTAATATGAAATATCGTCTCACATCTGAAGCAAGTATTGTGTGTATTCAATAAACTATTTACAGGAATTTGTGGTGTAACTCACTTCACCTTCCCTTGTCAAAAAATAATAAATTGTGGCGAAAGTCATGGTAAATCCATGGCTGCAAAATAAATTGTGGCGAAAGTCACTGGCCTGATGCACTGCTGCAATCTCTTCTCTTATTTTTCATGTAGAAGCTGAGCCCCAATAACTGAAGACATTGGGAATGCATAGACAACTTGCGGGCTAGGAGGTTATAGATGATTTATGCAAATACACATAATATATTCTTAAGATGTGGGACAATATATCCAATCTGACATTCCAACATCAAGCAAGCAACTATACTCTAGTACCAAATCAGTTATGATCGGCCTTATGAACCTCTACATTATTCCTCTCTGTTCAGATCTACTATATTCCTATACAGTGTTTTGGAAGGCGAGAGGCGACAAAAAGCGATGAGGGCCCATTTCACTGAGGTGAGAAGTGATGTGCTTGTTTTTCGAAGTGAAGCGTCAATTAATACAAAAAGATAAGTATTAATTTTTCATCTATAATTAACCAAAAACTCAATAGCAATAGCATATTAGGCAAAATTATTTAAGTTATTATGCAACTAAATCCGAATAAATGCTAAAAGAAAAAACTGAGCAAAAATGCAGAAGAAGAGGATAAAATCATAAAACAGAGGATGAAAGAAGAAAGAAGTTGACTGATTTTAGTTGCTGGAAAGCAGAGGAGAAAGAAGAAAGGAAGAAGTACCTGAACTCTAGCTTTGACTTGCCTCATCTAAACGAAAAACAGAGATTGCTGCTGGACAGAGAAAGAAGGAGAGAGAAGTTGCGCAGGGTAGTCCGAGTCTGACCAAAAAAACCTAGCTCTCAAATTGTAATTAAAATTGAAGCTTCGCCTCACAAATGCTTTTCTGATCACTTCTTGCCTCTAGGAAAAAGGCACTGATTGTATGCTTCACCTCTCCTCATGCTTAAGCGCTAAGCCGAGCGCCTTTCACAATATTGTGCCAACACGAAATAGTTTTCCTTATTCTAACAAATTATAAGGCATGTAATCTTTGCATGTACATAATATACCATTGCCTCAACCTAAATTCAGAATACTGAACACTATGTACTTCATTTTCCTAGTAGTAATGACACAACCATATCAATAGCTAGGTAATCAATGAACAAAACACACTTCTTATTGGAGAATCGGCAATTCAAAGTTCTACTATAAGGGATCAAATTAGAATCTCTAAGATCTTGGCAATGATCCAATCAAATCAATATTAACTTGTTCTTGATTATGTTTTATGATAAACTATGTTTTTGCAAATGATGTAGTTTTGATTAATGAGACACGCAACGGAGTTAACTCTAAGTTAGACGTTTGGAGACAGACCCTTGACTTTAATCGCTTGAGGTTGAGCATGATCAAGATGCAGAAGTTAATAGTCATTTATTCCTTCATTGCAAAGTAGCTACAAGCTTATGGAACATGATTCTTGGTCGTCTTGGTGTATGCTGGGTAATTCCAAAGTCCACTAAGGACTCAACAGCTGAAAGGAGATAGGAAGAAGGGAGTCTAACTGAAGATTGGTGGGAGTTAATCCCGGCCTGCATCTGGTGGTCCCTATGGAAAGAAAGGAATGGAAGATGCTTTGAGGATAAGAGGAACAACATCCAGAAAATTAAAATGAATAGTCTTAGTCTTTTGTATTTTTGGTGTAAACAAGATATGATGGGGGATATAGAACTTTATGCAGACTTTATAGGTAATTTGTAATCTCCCGTAGGGTAGTTTGATATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACCGTTACCTTTATCTCAAAAAAAAAGAAAAGATTGAGCTTGATCAAGACTGAATACTTGGTGCAAGTTCAGTGACGTGACACATGAGGCTGATGCGAAAGCGAGACTTAATTCACAGATCATCCAAAAGAGAGGTAGTTTCAAGCATCTTGGGTCAATTATCGAGGGAAATGGAGAGTTCGACAAGGATGTCACTCACCATGTTGGTGCTAGGTAAATGAAATGGAGGCTCACATCTGGAGTCTTGTGCGATAAGATGGTGTCACATAGACTTAAAGGCAAGTTGTACAGTTTGGTTGTTAGACCACTTATGTTGTATTGGTGCAGAGTTTTGGTCAATCGAGAATTCTCGCATTCAGAAGATGAAAGTGGCGGAGATGATGATTTTGCAATGAATGTGTCGATATACCAGGAGAGATGAGTTAGAAATAAGGATATCCGAGACAAGTTGGGGGTGACTTGTGGGAAGCGAGGTTGAGATGGTTCGGGTATGTCACTAGGAGATGCATGGATGTCCCCGTGCAGAGGTGTAAGAGGTTGTTTATGGATGGATTCAGGAGAGGGAGAGGGAGAGGTACATCAAAGAAGTACTAGAAGAGGTAATTCGATAGGATATGACATAGTTGCAGCTTACTGAAGACATGACCTTAGATAGAAAAGTGTGGAGGACACAAATTAGGGTAAAGATTAGTAGGTAGGAGTGCGTCCATGATGGTAGGTCGGAGTGCTTTGTCTTGTTGCCCTTACTAGTAGTCATAGGACTATTCTTGTAGTTTTTTGTTCTTCAATTTCTATGACTATCTATTTGTGTAGTTTGTTTATAAGATTATTTTGTTGTAGTACTATTCTGGTCCTTTCTGTTGTTTTTGTTACTATCTATTGTCAATGGTGTTTTCATTATGTCTTTTCCTAGATTGTTTTTGCCTTGAGGCAGGGGTTTATCGTAAACAACCTCTCTACCTCATCTCCTAGGTAGAGGTTAGGTTTGTTATACCCTCCCCAGATCCCACTGTGTGGGACTACACTGGGTATGGTGTTGTTGATATACTAGGTTACCTATAAAAAATGTACTACAATACTGGGTAAAAATCAAATAGGAAATCACCAATGGCCAAAGGGGTAGCAGTTGACATCAAATACATGTTGTATGCAACTGTGTTTTACTTCTTCTCTTTTGCTAATAGATGCACACAGTTTGTTGAGCATGTAAATTTATAATAATTATGGTGGTAGAAGAAGAAATTATCAAGTAATTGTTGGAGTATATTTGCGGCACTACCAACTTGGTCCTGAATGTGTTTCATTCGGACTGTAAGTTTCTAGTTATTTCTCCAGTATTCAATAAAATGTCAGTTATATGAAATCTTCACTATGATGTCCTAGCTTAATTTGGATTTTAAACCAGTGAGAAGAGGAGGTTATATTTTTTGAGGATAAGAGGAGGTTATATATTGATGAACTGCCTTTGTCCCATTTTACATTTTATATGAAATTCTCTGTTTTAGGTTGTCTTGGAAAAGATTAACAAATTGCTTCTGAAAACTACGTTTTCGTTTCTTTTTTAGCTTCACTCTCTTCGCACTAGTCCTTGTTTATCTTTAAATGTTATTTGGCAATTGTAACTCTACGAATGCCTAGCAATGAGGTAAAATAGTTGTTGTGATGTAAAAATTGTTTGGACATTTGAAGAAGATGAACATGAGGTCTAAACATATGAGTTGTCTCTTAGATATGAAGACATCCTTTGTCATAATTCAATAGGCCAAATAAATAGTCGACCGCTAAAGTTTCCACACCACTTACCACCGCCCAAGAGAACCACCATGGCCAATTGGATGTGACTGGTTTCTTTGTATTCATGACAATGGGGGAGGGTGTAGGAAAATGAGTGTAGCTTGGTGTTAAGCAAGTGTTTTTGCTTTTGTTGTCAGCAAAAACAATCAACAAACAATTCTTTAAAAAAGAAGAAGAAAGAATAGCTACTATAGCTTTTACATCTAAATGAATGAAGTTTTGTATGCATTTCCCTTGAGGTAACTGTCTTATAGAGTTTGATTTTCTTCTCATTCTTGATTATTGATTCAGCACGGAGGTTCCACCAATGCCTTTACATCTTCTGAGCGCACCAACTTTTACTTCGATATCAATGCAGATTGTTTTGAAGAAGCATTGGACAGGTATGGAATTAATTCTCCTTATAATCTTTGAAAGAGTATCTATCAAATGTCTTATGGTGTTTCATTATATAGATTTGCGCAGTTTTTTGTCAAACCATTGATGTCACCTGATGCCACAACAAGGGAAATAAAAGC</genome_strand>
        <mrna_strand>AAGTGCAGGTTTTATTGATGCAAGTTGAGATTTTGAACTTACCCTTTGCTTTCATTTGTTGTATTTCGGTGATTCTTGAAATACCCATTTGGGATTTTGGACTTAAATCGTGTTTTTTGAGCTATTGAGATTTGGGGTTGTTAAACTTTGCGAGAAAATGGCTGTGGGCAAAGCAGATGAACCTGTAGAGATCTTTAAGGCTCGTTCTGATAAGAGGGAGTACAGAAGAATAGTTCTTCAGAACTCTCTTGAAGTTCTACTAATCACTGATCCTGAAACAGACAAG..................................................................................................TGTGCTGCTTCTATGGAGGTGTCAGTGGGGTATTACAGTGATCCTAAGGGTCTTGAAGGCCTTGCTCATTTTCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATATGCTGTTTTATGCAAGTGAGAAGTATCCTGTGGAGAATAGTTACTCAAAATACATCACCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGAGGTTCCACCAATGCCTTTACATCTTCTGAGCGCACCAACTTTTACTTCGATATCAATGCAGATTGTTTTGAAGAAGCATTGGACAG........................................................................ATTTGCGCAGTTTTTTGTCAAACCATTGATGTCACCTGATGCCACAACAAGGGAAATAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E214073" ref_strand="+" ref_description="SGN-E214073 [cLEC-80-A8]">
      <seq>aaggcaggagcttctcaaattttataaagaaaattattcagccaacttaatgcatttggttgtttatgcaaaagattgccttgataaaactcagacactggtacagggcatattccaagaagttccaaataccaatagaagttactcccctgttactgatcagccttgcaaatcagaacatcttcagattctagtcagagctgttccaataaaacaaggtcatagtttgaggcttgagtggccaataattccagacttagctcattacaaggaagggccttcactctatttgagtcacttgattggacatgaaggagaaggatccttgttttatgtcttaaagaagttaggttgggcaacaagcttatcggctggagagtcaggcggcggtcatcacttctccttttttgaagtttatattagtctgactgatgctgggcatgaccattttgaggatgttgtggcactggtcttcaaatatattcaccttctgcaacaagctggtgcccgcaaatggatatttgatgagctttctgctatatctgaaacgaatttccattatcaagacaagagttctcccatcggttatgtggtatatgttgcgtcgaacatgcagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="24832" stop="32728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25132" g_stop="25205" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25206" i_stop="25289" i_length="84">
            <donor d_prob="0.284" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25290" g_stop="25402" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="187" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25403" i_stop="26180" i_length="778">
            <donor d_prob="0.797" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26181" g_stop="26343" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="350" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26344" i_stop="26804" i_length="461">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26805" g_stop="26897" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="443" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26898" i_stop="27077" i_length="180">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.664" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27078" g_stop="27163" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="529" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27164" i_stop="32339" i_length="5176">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32340" g_stop="32426" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="616" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E214073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25132" e_stop="25205"/>
          <exon e_start="25290" e_stop="25402"/>
          <exon e_start="26181" e_stop="26343"/>
          <exon e_start="26805" e_stop="26897"/>
          <exon e_start="27078" e_stop="27163"/>
          <exon e_start="32340" e_stop="32426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAGGAGCTTCTCAAATTTTATAAAGAAAATTATTCAGCCAACTTAATGCATTTGGTTGTTTATGCAAAAGGTAGCTGGTGATTTCCCTTTTCTTCCCTATAAATTATTACTGTGGAAAAGCATCTATGCTAATTTTCTCTTTTGAAACACTCAGATTGCCTTGATAAAACTCAGACACTGGTACAGGGCATATTCCAAGAAGTTCCAAATACCAATAGAAGTTACTCCCCTGTTACTGATCAGCCTTGCAAATCAGAACATCTTCAGGTGCTCAAATAGGTGTAGAGGTCATAAATTTGTTACAAAAGTTAAAAAATATAAGGGCTATGTTCTAGTGAATCTCTTTTCTCTTGCCCCTTTTGTGTTGGCTGGATTGGAAGGTGCTTTTTTAGTGGTAGAAAGATTAGCGGCAAGACAAGGAAGGGAGAACGTGTTTATGATATGGGGTCTTATGATTGATAATTTTTACTATGCTTATGATTTATCAGATAGATTTTGGAATTTGTGAGAAATGAATGGTTTTTCCTATACACGCATTTGATTTTATCTGCACCGTGGTTTCAGAGGAGAGAGCTAAACTTCTGATTGTTTCCTACCACCACTTATCATCCTTCGCGATCTAGCTTAATTGGCTTTGGTAGACAACACATGAAAGAAACTGTGAGCCCTTTCCTTGTCTCCATGTGCTTGTGATGCAATAAGATGTCACCTAAGTTTAACAAGTCACTCAATTATCATATATTATATACTCGGCACTGAGTTGACATATCAGATATATTCTGTACGTTTTTTGATAGACGTTCCTGCTGGATTATTCCAAGACCTGCTACTCCTTAATCTCATAGAGAAGTCTTATTGATGAAGCGTGAATTATGCCAAATTTTCTAGGAGTGCGTTGAAACTTCCCAGTTTCATTTTTCATTTTGGGTAGGGGTGTCAGAAATGCGCTAGTAATCTACGTTCTTCTCTCTTCTATTGCATTATCTTCATTATTACAAAGACATGGTTGTCCTCTGCCTATGATTCTTTACTCTTTGTTACACAGATTCTAGTCAGAGCTGTTCCAATAAAACAAGGTCATAGTTTGAGGCTTGAGTGGCCAATAATTCCAGACTTAGCTCATTACAAGGAAGGGCCTTCACTCTATTTGAGTCACTTGATTGGACATGAAGGAGAAGGATCCTTGTTTTATGTCTTAAAGAAGTTAGGTGAGTTCTCAACATAATTGTTAGAAATTCTGATTCTATTTCACCAGAGATTTGTTATGAGGCACTTATGGAGCCCTTGAGTTCTATTGCAATAATATGCGAAAATAGTGAAAACACACAAGTGTGTTGCTTACAAGCAGATCTTTTGAGTGGTTGAGATATTTTTTCATTAATTCTATCCAAAGTAACCTTGCAGGAGGCTGCGTATAGTATGCAATCAACAATAACTATTGCTCGAAAGAACGAAAATGTTTTTTATCTACCATGATAAGTAGCGAGAGGATTGATGTAATGTTAATTACATCTGATAATCCAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTATTCTGGAAGTGGGGCACACGTTGAAGTTAGAATTCCTTGTTAGTTGTCAGGACTCGACTCTCCATACTGTTTCTAAGTACTCAGTGCTGTTTATCTCTGCAAATCATTGCAGGTTGGGCAACAAGCTTATCGGCTGGAGAGTCAGGCGGCGGTCATCACTTCTCCTTTTTTGAAGTTTATATTAGTCTGACTGATGCTGGGCATGGTTAGTTTCCTCATCTCCACCCCCCCCCCCCCCCAAAAAAAAAAAAAAAACCCCCCGCACTCCCTTATGTGGAGAGTAAATTAATGGAAATGTGTTTGTCGTGACCCTCCATTTTTTCTGGACTTTACCTTCTGTCGGGAAGTCTACTACACTGACCATCATGTCTCAATAATATTTCAGACCATTTTGAGGATGTTGTGGCACTGGTCTTCAAATATATTCACCTTCTGCAACAAGCTGGTGCCCGCAAATGGATATTTGATGAGGTTGTTGCACTTAATTTTGTATCAAACACAAAAGTGTTCATTGTTGTTTACAGCAGAACAATAAATCTTCAAGGTTAGAGGAAGATTTATTGATGAAACATAGGAAACATACATAGCAAATTAAAATTTCCTCAGCGATCTCTGCCTTTTCCTTTAATTCAATCCTCATATGTTCCTCAAAATTGGCTTCACTTTAAAGTGCATCCAGAAGTAAATGTGTTGGGGAGAAGAATCACAGAGTTACTTGTCATGTCACAATTAGCTTTTGTTCCCAATTTATAAATCTAAAGAGAGCATGATAACACACAGAATCTACAGAAGGAGAGGATTTACTTTATGTAGTAGGTGTTAGTTCTGTAAGATTCTACTGAATCTGTAAGACCTCTCTTGTTTGAAGTTTATACGGGCATGTTATCTGAAATATATGGAGCTAAGTGGGTGATACCCGGGAATCTGCAGCAAGCTTGATCAGCTAGCCGGGACAGGGACCAAGGAAATTTAGAGACAGAATTGGAGAAAATACCTTAGTGTATGTTGGGCCGTTCAAATAGAAAAAACTCAGATATTTTGAGGGAAAAGGTGAACCCATATCATATGTAAAGCCTAGATAATGTCAAAATGTGTACTTCTGGTTCTTGTGTAGAGTGAACTCACCTATGTAAGTTTCTCATAGCCAATGTAGAGAATGGATGATGGTTGTCATAGATTGACAATTGTGCATAGTCAAATATTTATAAATCTTCATAGTAATGATGTGTTGGGACATCTTCTTCTGGGCACACACTCCCTAATTTCTCTTAAAAGGATAATTATTAAGTAATGACATGATATGTGACTAAATAGAGTGAAATGAATATATCATTTATAGTGTGGGAATGAAGCGTAATTATTATTGCTGTTTTTTGTGTGGTACGATACTGGGATGAATATTGTAATAGATTCCATTCTGGAAATTATGGACTCCTGTCACATCTAAAAAAAATCAAAATTCAGACTTTTGTGCATCCTCAGTACCTCCTTGGTGCTGTTTTGTGTATAGTAAAATTATCTAATGTTCATGTAAAACTTAATATATGAAGAATGTGTATGGTTTAAGTAGAACATGTACCAAGTGAGTACCCACAACTTATGCACTAAATTGCTTCTTGAAGACGTAGATTATGGGGGCTGTGAGTTGTCTGAACTTTCCCTATCAGTGCTCAATACTACTCCCAATATATATACGCATATATATACATACATACATATATATATATATACATACATACATACATATATGTATATATACATACATACATACATATATATGTGTATATATATACATATATATGTATGTATGTATGTATATATATATATCTATACACTCTGAACTGTCTTTGAAACTCATTTTTCATTTAGAAAACAAGGTTTCTCTTTACTCAATGAAAAATACATTCTGGGTTGATTTTTCTCAGAAAGTCTACTCCTTTTCTTCATGTAAAAATGAACATTTGGGAAATACATAGTTCCCTTACTCTTTCTCAAACTATTCTTTACTTCCTCAAAACTCAGTTTAAACAATAATATTTTGTTTAAAAGATTCTCTATAAGAATTCAATAGAAACTCAAGAATAGGGTTCATGCTGAAAAATAGACATGAACAATCTGGTCAATAATCACAATACACAATGTACAACAATTCAATAATTAAAATTAGGAATTCAATAATCCATAACTCAAGAACTTAGAACTCAATATCAACTCATCTGAATACTGAAATCTAGAATAGAATCCTAAGTTTTCGTTTACTAATTTGAACGTAGATGTAGGACGTGAGGAAGAACTAGTCCAACACTGTGATAGTCTTGCATACTGGGAAGAACAGTCTTTGGCAAAATAGATGAAATTTGAAGAACGTTTGAAACCCTAGTTTTCTCCTCTTGAATCCTTGCTCTAAGTTTTTGAAGTGTTAAAGAACGTAACAAAAAGTTTTAACACTGTTTAGACCCTTAATTAGGTGAAAAAGGGTCGTGTTTAGGCTTAGAAGGGGTGGGAAACCTCTCTTTAAAAACTGACAAAAACTGTCCACGGGACTATCTATGGTTTGTGGTTTGATCTAGATCCCATCCGTGGAATTGATATTGAATTTTTAAGGCTCAAAAGTCCATTTACAAGTCCAAACGACAACTAGTAGTAATTCTTACGGCCCGTCGGTTGGATCCGTAGGCTTTGGGTCCCAAAAGTTGACTCCCAACACTCTACTGATGACTTGATAGGACGAATCGTTGTTCAACCTATAGCCTGTTGGTTGGAGCCTTAGTTTGCAGACTCAGAAATCTCTGATATGACAGTCTTTGGTAAAACGATCATCACTTTTTACTCCAAACATGAAATGAGGCAAACTTGATGACATTGGAAATAAGACTCAAAGACCTTTAATTTGGTAGGTCATAGGCCACCTAATTCATTATGTACGGGGAGATATGATCGTTTGAAGATGACCTAAATAAATCTTATGTCAAAACTTATTCGGCAATGAAGCTTTAAGGGGTTCTTGTGACCCAAGTCATATTCAAAAATCATTCCTACACTAAAGAATTGACCTTAACACAGTAAAATTAAGAATCACTCAGTACAACCTTATACTCAAATGAAGAATGCTTCAAGTTTTGACTTATAAATTGTCGGGGTGTTACAGAGAGAAACTTAGCAAACTGGAAAAGTCAATACTTATCCTGGGGAAAGACTTGCTATGATCAAAAGTGTGCTGAATGCCTTACCAACATGCATGATGTCTGTTTTCCTGGCACCACCTGGTGTAATCAATAGAATAGAGGTAGTCAGAAAAACCTTCTTTTGGCAAGGAATAAAGATAAGAGGAAGTATCATCTTGTCAAATGGGAAGAAATGAACATAAGCAAGAAGATTGGGGGAGTGGGCATCAGAAACATGAAGTTTCTAAACCAAAGCCTTCTGATGAAGTGGTTATGGAAATTTGCATCTGCTAAGAACTCATTGCAGAAGGAAGTGATTGCTGCAAAATATGGAATGAGGGATCAGTGGATGACAACAGAGTTAGCCTCTCCATATGGGTCTAGTGTATGGAGATCTATCAGTGATCTATGGGATCTGGTGCTAGAAAGATCATACTGTAAGGTGGGAATTGGCAGAAAGGTGGCTTTTTGGATGGACAAATGGTGTGGACAATTTTCACTTAGCCAAAGGTTTCCTGACCTCTACAACCATATGTCAAATGCAACAAGCAACTGTAGCAGAATAATGGAATGATTAAGGGTGGAATTTGCACTTCAAGAGAAACTTAATGATTGGGAGATGTGTGGAGTAGCAGAGTTTTTTTTCACCCTAGCACAATTTAGTAACCTGTCTAAGGAAGAGGATTCACTGGTATGGAATGTGGGGAGCGAAGGGTATTTTACTGTTAACTCAGCATATGAAGATCTCAGCACAGTTGGCATTGAGGAAGTAGAATGGCCTTGGAAGATGATATGGAAAACTAAGATAGCCTATAAAGTAGACTATTTTACTTGGTTGTTAGCTAAGGAGGCAGTTTTGACATATGAGAACTTGAACAAGAGAGGTTTTCACCTGTGTTCCATCCAGGTGCTTTTTGTGTGAAGAGCAAGGGGAGACAGCCGACAATCTCTTCTTACACTGCAAGTGGACAAACCAGCTGTGGCAAATGTTCACCAATATGAGAGAGATCAAATGGGTGAATCAGGAAGCATCAAAGTGGTTTTGAAGTGCTGGAATAGGATTTGAAATGCAGGAAGAAAGGAGGAGAGATGTAATATTGTCCCATCATGTATATGGTGGACAGTATGGCTAGAGAAGAACCAGAGATGTTTTGAAGGAAAGCGGAGCAACAATACCAAGATTTCAGCTTAATTATTTAGCTCTGTATTATTTTTGGTGTAAAGAAGTAGTCTTAGATTGCTCAGAAGTAATCAACACAACTTGGTAGCTAAATACAACACTTTTGGAGGGGAACTACACTTTTGAGGAAGTATACCTGTGGATAAATATAGACTAACGGTTACTTTTATTTTAAAAAAGAAAGAGAAAAAGAGAGAGATAAGCAAAAAAAATCTGCTGAAAATGACAAACTCCTAAAGTCTAGAAAGTACAATGTAATCAAAATTCAAATAGAACTCCTACATATTAGATCTAACTAGTTGATATGGTGTAAATAGTTCCTTAGTTTCTTGTGTATTGATTTCTATTATTGTTTCTTGTTCCTTGAACTTCGACTATTATATTATTTTGTTGTAGTTACTGTCTTGTTACTAGATTTTGTTGTAGTTACTATCTGTTATTTCTTGTACTGCTATTATTTATTTTTCTCGACTGCTTTGGACTATATTCGTGGGTGGGGTGGGGTGGGGGGCTATCGGAAACAACCCCTCTACCTGGGAGAGGTAAGGTCTGCATACACTCTACCGTCCCCGGCCCCACATTGTGGAATCATGCTAGGTATGATGTTGTATAGATTCCAAGTCATTGTAGGTATTTTGAGATAATTTTCTTCCATGTGATTTTAGGTTCACCTTTATCTCCTTTCAACATCTTCAATTACCATAGTTTCACATCTTCAAACTGTTGCATTTAGGAGTCAGCATAGGACATGACCAAACTGTCTCAAAATTCAAATCGAGAGATCAATAATCTAGTTGCATAAAAGCTCTAACGTTTATGAAAGTTTTAAATGATTTTGTGTGTGTATGTGAAAAAATAGGTACATATGTGTGGAGATACAAATATTTGCTAGCCAACTAGTTTGCACCTATATTTTGACTCCATTGGATGATTGGTTTGCATTGAATTTAAAGAGAAGCATAACTGGTCAATTGTGGGCACACAGCAAAGCATTGATATAATAAGACTGCTTTTGTTCTTGATCAAAAAGAAAAAGAAAAAAACTGCATTGTTTTATAGATAATTTGCCATATAGTATTGAAATGAAATGGTTCATAATAGAGTGGAAGGCATTCAAAGGATTTATATAGCTGTCCCTACTAGTTAGGGATTGAGATATGGTTTAATGATTGAATAGGAAGTTTTCAACTTCTTGTATTTATTTATTTACATTTTTTGTTTGATGAATTGGCTTAATAGTTAGATGTACAAATGTTCGTTCTTTAGTCAAAGTTTCTAGCTCACATATATTCTAAACATGCAGCTTTCTGCTATATCTGAAACGAATTTCCATTATCAAGACAAGAGTTCTCCCATCGGTTATGTGGTATATGTTGCGTCGAACATGCAG</genome_strand>
        <mrna_strand>AAGGCAGGAGCTTCTCAAATTTTATAAAGAAAATTATTCAGCCAACTTAATGCATTTGGTTGTTTATGCAAAAG....................................................................................ATTGCCTTGATAAAACTCAGACACTGGTACAGGGCATATTCCAAGAAGTTCCAAATACCAATAGAAGTTACTCCCCTGTTACTGATCAGCCTTGCAAATCAGAACATCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTAGTCAGAGCTGTTCCAATAAAACAAGGTCATAGTTTGAGGCTTGAGTGGCCAATAATTCCAGACTTAGCTCATTACAAGGAAGGGCCTTCACTCTATTTGAGTCACTTGATTGGACATGAAGGAGAAGGATCCTTGTTTTATGTCTTAAAGAAGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGCAACAAGCTTATCGGCTGGAGAGTCAGGCGGCGGTCATCACTTCTCCTTTTTTGAAGTTTATATTAGTCTGACTGATGCTGGGCATG....................................................................................................................................................................................ACCATTTTGAGGATGTTGTGGCACTGGTCTTCAAATATATTCACCTTCTGCAACAAGCTGGTGCCCGCAAATGGATATTTGATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCTGCTATATCTGAAACGAATTTCCATTATCAAGACAAGAGTTCTCCCATCGGTTATGTGGTATATGTTGCGTCGAACATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E311509" ref_strand="+" ref_description="SGN-E311509 [cTOA-6-C3]">
      <seq>ttgattggacatgaaggagaaggatccttgttttatgtcttaaagaagttaggttgggcaacaagcttatcggctggagagtcaggcggcggtcatcacttctcctttttttgaagtttatattagtctgactgatgctgggcatgaccattttgaggatgttgtggcactggtcttcaaatatattcaccttctgcaacaagctggtgcccgcaaatggatatttgatgagctttctgctatatctgaaacgaatttccattatcaagacaagagttctcccatcggttatgtggtatatgttgcgtcgaacatgcagctttacccgccaatagattggttggttgggtcatctttaccttcaaagttcagtccagacattattgaagcagttctaactgatctcacaccacaaaatgtcaaaatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="25992" stop="37203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26292" g_stop="26343" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26344" i_stop="26804" i_length="461">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26805" g_stop="26897" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="146" r_length="94" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26898" i_stop="27077" i_length="180">
            <donor d_prob="0.727" d_score="0.96"/>
            <acceptor a_prob="0.664" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27078" g_stop="27163" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="232" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27164" i_stop="32339" i_length="5176">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32340" g_stop="32426" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="319" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32427" i_stop="36800" i_length="4374">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36801" g_stop="36904" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="423" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E311509" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26292" e_stop="26343"/>
          <exon e_start="26805" e_stop="26897"/>
          <exon e_start="27078" e_stop="27163"/>
          <exon e_start="32340" e_stop="32426"/>
          <exon e_start="36801" e_stop="36904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTGGACATGAAGGAGAAGGATCCTTGTTTTATGTCTTAAAGAAGTTAGGTGAGTTCTCAACATAATTGTTAGAAATTCTGATTCTATTTCACCAGAGATTTGTTATGAGGCACTTATGGAGCCCTTGAGTTCTATTGCAATAATATGCGAAAATAGTGAAAACACACAAGTGTGTTGCTTACAAGCAGATCTTTTGAGTGGTTGAGATATTTTTTCATTAATTCTATCCAAAGTAACCTTGCAGGAGGCTGCGTATAGTATGCAATCAACAATAACTATTGCTCGAAAGAACGAAAATGTTTTTTATCTACCATGATAAGTAGCGAGAGGATTGATGTAATGTTAATTACATCTGATAATCCAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTATTCTGGAAGTGGGGCACACGTTGAAGTTAGAATTCCTTGTTAGTTGTCAGGACTCGACTCTCCATACTGTTTCTAAGTACTCAGTGCTGTTTATCTCTGCAAATCATTGCAGGTTGGGCAACAAGCTTATCGGCTGGAGAGTCAGGCGGCGGTCATCACTTCTCC-TTTTTTGAAGTTTATATTAGTCTGACTGATGCTGGGCATGGTTAGTTTCCTCATCTCCACCCCCCCCCCCCCCCAAAAAAAAAAAAAAAACCCCCCGCACTCCCTTATGTGGAGAGTAAATTAATGGAAATGTGTTTGTCGTGACCCTCCATTTTTTCTGGACTTTACCTTCTGTCGGGAAGTCTACTACACTGACCATCATGTCTCAATAATATTTCAGACCATTTTGAGGATGTTGTGGCACTGGTCTTCAAATATATTCACCTTCTGCAACAAGCTGGTGCCCGCAAATGGATATTTGATGAGGTTGTTGCACTTAATTTTGTATCAAACACAAAAGTGTTCATTGTTGTTTACAGCAGAACAATAAATCTTCAAGGTTAGAGGAAGATTTATTGATGAAACATAGGAAACATACATAGCAAATTAAAATTTCCTCAGCGATCTCTGCCTTTTCCTTTAATTCAATCCTCATATGTTCCTCAAAATTGGCTTCACTTTAAAGTGCATCCAGAAGTAAATGTGTTGGGGAGAAGAATCACAGAGTTACTTGTCATGTCACAATTAGCTTTTGTTCCCAATTTATAAATCTAAAGAGAGCATGATAACACACAGAATCTACAGAAGGAGAGGATTTACTTTATGTAGTAGGTGTTAGTTCTGTAAGATTCTACTGAATCTGTAAGACCTCTCTTGTTTGAAGTTTATACGGGCATGTTATCTGAAATATATGGAGCTAAGTGGGTGATACCCGGGAATCTGCAGCAAGCTTGATCAGCTAGCCGGGACAGGGACCAAGGAAATTTAGAGACAGAATTGGAGAAAATACCTTAGTGTATGTTGGGCCGTTCAAATAGAAAAAACTCAGATATTTTGAGGGAAAAGGTGAACCCATATCATATGTAAAGCCTAGATAATGTCAAAATGTGTACTTCTGGTTCTTGTGTAGAGTGAACTCACCTATGTAAGTTTCTCATAGCCAATGTAGAGAATGGATGATGGTTGTCATAGATTGACAATTGTGCATAGTCAAATATTTATAAATCTTCATAGTAATGATGTGTTGGGACATCTTCTTCTGGGCACACACTCCCTAATTTCTCTTAAAAGGATAATTATTAAGTAATGACATGATATGTGACTAAATAGAGTGAAATGAATATATCATTTATAGTGTGGGAATGAAGCGTAATTATTATTGCTGTTTTTTGTGTGGTACGATACTGGGATGAATATTGTAATAGATTCCATTCTGGAAATTATGGACTCCTGTCACATCTAAAAAAAATCAAAATTCAGACTTTTGTGCATCCTCAGTACCTCCTTGGTGCTGTTTTGTGTATAGTAAAATTATCTAATGTTCATGTAAAACTTAATATATGAAGAATGTGTATGGTTTAAGTAGAACATGTACCAAGTGAGTACCCACAACTTATGCACTAAATTGCTTCTTGAAGACGTAGATTATGGGGGCTGTGAGTTGTCTGAACTTTCCCTATCAGTGCTCAATACTACTCCCAATATATATACGCATATATATACATACATACATATATATATATATACATACATACATACATATATGTATATATACATACATACATACATATATATGTGTATATATATACATATATATGTATGTATGTATGTATATATATATATCTATACACTCTGAACTGTCTTTGAAACTCATTTTTCATTTAGAAAACAAGGTTTCTCTTTACTCAATGAAAAATACATTCTGGGTTGATTTTTCTCAGAAAGTCTACTCCTTTTCTTCATGTAAAAATGAACATTTGGGAAATACATAGTTCCCTTACTCTTTCTCAAACTATTCTTTACTTCCTCAAAACTCAGTTTAAACAATAATATTTTGTTTAAAAGATTCTCTATAAGAATTCAATAGAAACTCAAGAATAGGGTTCATGCTGAAAAATAGACATGAACAATCTGGTCAATAATCACAATACACAATGTACAACAATTCAATAATTAAAATTAGGAATTCAATAATCCATAACTCAAGAACTTAGAACTCAATATCAACTCATCTGAATACTGAAATCTAGAATAGAATCCTAAGTTTTCGTTTACTAATTTGAACGTAGATGTAGGACGTGAGGAAGAACTAGTCCAACACTGTGATAGTCTTGCATACTGGGAAGAACAGTCTTTGGCAAAATAGATGAAATTTGAAGAACGTTTGAAACCCTAGTTTTCTCCTCTTGAATCCTTGCTCTAAGTTTTTGAAGTGTTAAAGAACGTAACAAAAAGTTTTAACACTGTTTAGACCCTTAATTAGGTGAAAAAGGGTCGTGTTTAGGCTTAGAAGGGGTGGGAAACCTCTCTTTAAAAACTGACAAAAACTGTCCACGGGACTATCTATGGTTTGTGGTTTGATCTAGATCCCATCCGTGGAATTGATATTGAATTTTTAAGGCTCAAAAGTCCATTTACAAGTCCAAACGACAACTAGTAGTAATTCTTACGGCCCGTCGGTTGGATCCGTAGGCTTTGGGTCCCAAAAGTTGACTCCCAACACTCTACTGATGACTTGATAGGACGAATCGTTGTTCAACCTATAGCCTGTTGGTTGGAGCCTTAGTTTGCAGACTCAGAAATCTCTGATATGACAGTCTTTGGTAAAACGATCATCACTTTTTACTCCAAACATGAAATGAGGCAAACTTGATGACATTGGAAATAAGACTCAAAGACCTTTAATTTGGTAGGTCATAGGCCACCTAATTCATTATGTACGGGGAGATATGATCGTTTGAAGATGACCTAAATAAATCTTATGTCAAAACTTATTCGGCAATGAAGCTTTAAGGGGTTCTTGTGACCCAAGTCATATTCAAAAATCATTCCTACACTAAAGAATTGACCTTAACACAGTAAAATTAAGAATCACTCAGTACAACCTTATACTCAAATGAAGAATGCTTCAAGTTTTGACTTATAAATTGTCGGGGTGTTACAGAGAGAAACTTAGCAAACTGGAAAAGTCAATACTTATCCTGGGGAAAGACTTGCTATGATCAAAAGTGTGCTGAATGCCTTACCAACATGCATGATGTCTGTTTTCCTGGCACCACCTGGTGTAATCAATAGAATAGAGGTAGTCAGAAAAACCTTCTTTTGGCAAGGAATAAAGATAAGAGGAAGTATCATCTTGTCAAATGGGAAGAAATGAACATAAGCAAGAAGATTGGGGGAGTGGGCATCAGAAACATGAAGTTTCTAAACCAAAGCCTTCTGATGAAGTGGTTATGGAAATTTGCATCTGCTAAGAACTCATTGCAGAAGGAAGTGATTGCTGCAAAATATGGAATGAGGGATCAGTGGATGACAACAGAGTTAGCCTCTCCATATGGGTCTAGTGTATGGAGATCTATCAGTGATCTATGGGATCTGGTGCTAGAAAGATCATACTGTAAGGTGGGAATTGGCAGAAAGGTGGCTTTTTGGATGGACAAATGGTGTGGACAATTTTCACTTAGCCAAAGGTTTCCTGACCTCTACAACCATATGTCAAATGCAACAAGCAACTGTAGCAGAATAATGGAATGATTAAGGGTGGAATTTGCACTTCAAGAGAAACTTAATGATTGGGAGATGTGTGGAGTAGCAGAGTTTTTTTTCACCCTAGCACAATTTAGTAACCTGTCTAAGGAAGAGGATTCACTGGTATGGAATGTGGGGAGCGAAGGGTATTTTACTGTTAACTCAGCATATGAAGATCTCAGCACAGTTGGCATTGAGGAAGTAGAATGGCCTTGGAAGATGATATGGAAAACTAAGATAGCCTATAAAGTAGACTATTTTACTTGGTTGTTAGCTAAGGAGGCAGTTTTGACATATGAGAACTTGAACAAGAGAGGTTTTCACCTGTGTTCCATCCAGGTGCTTTTTGTGTGAAGAGCAAGGGGAGACAGCCGACAATCTCTTCTTACACTGCAAGTGGACAAACCAGCTGTGGCAAATGTTCACCAATATGAGAGAGATCAAATGGGTGAATCAGGAAGCATCAAAGTGGTTTTGAAGTGCTGGAATAGGATTTGAAATGCAGGAAGAAAGGAGGAGAGATGTAATATTGTCCCATCATGTATATGGTGGACAGTATGGCTAGAGAAGAACCAGAGATGTTTTGAAGGAAAGCGGAGCAACAATACCAAGATTTCAGCTTAATTATTTAGCTCTGTATTATTTTTGGTGTAAAGAAGTAGTCTTAGATTGCTCAGAAGTAATCAACACAACTTGGTAGCTAAATACAACACTTTTGGAGGGGAACTACACTTTTGAGGAAGTATACCTGTGGATAAATATAGACTAACGGTTACTTTTATTTTAAAAAAGAAAGAGAAAAAGAGAGAGATAAGCAAAAAAAATCTGCTGAAAATGACAAACTCCTAAAGTCTAGAAAGTACAATGTAATCAAAATTCAAATAGAACTCCTACATATTAGATCTAACTAGTTGATATGGTGTAAATAGTTCCTTAGTTTCTTGTGTATTGATTTCTATTATTGTTTCTTGTTCCTTGAACTTCGACTATTATATTATTTTGTTGTAGTTACTGTCTTGTTACTAGATTTTGTTGTAGTTACTATCTGTTATTTCTTGTACTGCTATTATTTATTTTTCTCGACTGCTTTGGACTATATTCGTGGGTGGGGTGGGGTGGGGGGCTATCGGAAACAACCCCTCTACCTGGGAGAGGTAAGGTCTGCATACACTCTACCGTCCCCGGCCCCACATTGTGGAATCATGCTAGGTATGATGTTGTATAGATTCCAAGTCATTGTAGGTATTTTGAGATAATTTTCTTCCATGTGATTTTAGGTTCACCTTTATCTCCTTTCAACATCTTCAATTACCATAGTTTCACATCTTCAAACTGTTGCATTTAGGAGTCAGCATAGGACATGACCAAACTGTCTCAAAATTCAAATCGAGAGATCAATAATCTAGTTGCATAAAAGCTCTAACGTTTATGAAAGTTTTAAATGATTTTGTGTGTGTATGTGAAAAAATAGGTACATATGTGTGGAGATACAAATATTTGCTAGCCAACTAGTTTGCACCTATATTTTGACTCCATTGGATGATTGGTTTGCATTGAATTTAAAGAGAAGCATAACTGGTCAATTGTGGGCACACAGCAAAGCATTGATATAATAAGACTGCTTTTGTTCTTGATCAAAAAGAAAAAGAAAAAAACTGCATTGTTTTATAGATAATTTGCCATATAGTATTGAAATGAAATGGTTCATAATAGAGTGGAAGGCATTCAAAGGATTTATATAGCTGTCCCTACTAGTTAGGGATTGAGATATGGTTTAATGATTGAATAGGAAGTTTTCAACTTCTTGTATTTATTTATTTACATTTTTTGTTTGATGAATTGGCTTAATAGTTAGATGTACAAATGTTCGTTCTTTAGTCAAAGTTTCTAGCTCACATATATTCTAAACATGCAGCTTTCTGCTATATCTGAAACGAATTTCCATTATCAAGACAAGAGTTCTCCCATCGGTTATGTGGTATATGTTGCGTCGAACATGCAGGTACATTCACAATTGTATTCCTGCATTTGGTGTCAATTCATTTTTATGGACGTTTTTGGCGTACTCACTGATTCTTTTTATCTTGTTTTTTTCTTCATGCAACTGATATTTTATGAAAAAACAGAATGCTAGAACCAAAAATAGCTCTAGAAGTATAGATTTTTTACAATTCCATCACATATCCAACTCCTAAAATGATAGATGTTCAATGGCGAACAATCGAGTGATGGGCATACTTCCATTGCTATACATAGGAAGTAACAAGTGATGTCAAATATTCTTCTTGTTCTCAAATCTTTTGCAATTTTTCCATATTAAAACGCAAGTTCGCTGGAGCTTAAGAAACTCAAAATGCAGACTAAGGGAACTGTTTTCTTGCCCTCCTCAACATGACATTATCAAAAGGCTTGACAGTGAAATTTCCTTGCTGATTGCATTGCCACGTGAATATAGCTAGCAGCGCAAACTTTGTGCTGATGAACATTGTGTTACCATTAAAACTTGTTACTAATTCCCGATATATAATGCTGATTTAAATGAAATCCCACTTTGGATGTGCACGGGCATTCAAAGGTATTTACTAATGTTTTGGGTCACTCCTCCATAAGGTGTTCTTTTGGATCATCAGTTACCTGTTCATGTTATTTGAGTCAACTTCTGGAATGCCTTTTGTGACACTCATACTAAAATCTGTGTCTGAATCTTAAATTTGGTTTACCGTTGCATGAGACTGTTGAGCTATATAAAGTCCACATATGATATGCAATGCTTATAAAAGCTTGGGTCACCCCACTCACTGCTTTAAGGCTTTGAGTTGAATATTTAGATTCTTTCATATATCATCTAGCAGAATAATCTTAGTCCTTCAACTCAGCCATCTTCTTCTCTTGTACTCGTTTGTCCTTATGATCGCCAATCCCAAAAGTTTCTGTTGACTCTGGGCCGCTCCATTTTACCACCTCCCTAATCATTCTTTTTTCCCTCATGGTAGAAATGACAGATGTCAACGGTTCAAATCCCATTCTCTACATACAAGAATGTTATCTATCGGAAATAATTATGTAGCGCACAGAGGTAGGGGTAAGGTCTGCATACATCCTACCTTCCCCAGGCTCCACTTGTGTGATTATACTGGGTATGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGTGGAGATGACGAAGAGCTTCTGGAAAGTGGTTGGCATTGCTATTTCCCTACCAGTGTTATCTCAAAATGTACTCCTCTCCCCCCTCTACCTTAGATTTTATGTGCTATCAGAATTTCTCCATCCTCCAATGATTTTCTTCCATAAAGCAGCTTCATATGAAGTTAATATGCCAGTATATCTAGAGGTATTTAACTCCCAATTCCTCCATCCCCATTTAGAAAGTAACCTTCTCTAATTATGACAATGTGAATAAATCTCTTCCTTCCTATTCCACAGAAAATTCAAGAATTCAGAACTGCTAATGAAAATGGGGTCAGATAAATAGTATAGTAAGCAAAATCATATGAAAAGAAGGGGGGTGAGAGTTTCTTGTCTATTATTATTGTTGGCTTAGTGAAGAAAGGCATAAGTTAGGTTATTAAATTAGAGAGTACACTCGATTAAGGTTATCTTTCCTTCTTCTGACAGAGTGCCCTAGTGAACCTTATCGACAACAAGGTTTCATTGTTAAATCTTCATGAGCGGACCTCGTTTGCCAGAAGATCACTGCCTTTGCCTGCTACCACCCTTGTCATGTCCTCCACTTCCTGAATCTATTCCAGAGGAAAGAGTTCACCCTTGCAAACATTAATTGTCAAACCAGAGATTGCCTGAAACCATAATAACGAAGAAGTAAACATATTGTTAATGGAACCTTCTTCAAAAAAATCTGAAGGGTAAGCTAGTGAGTATCCTTTTTTAGCTTTTTCTGCTGTGAAAAATATAAGAAAAAATATTATTGAATTGTTATTGTGTCTACATTATTACATTGAGACCCTATTTATAGACCCTAGAATACAATCCTTTACCAAGTAGGATACTATTTAGTATTCCTGTTTCTATTCTAATAGGATTGTATAAACCTATTCCTATTCCAATAGGATTGTATAAACTTATTCCTATTCTAACACTCCCCTCAAGCTAGTGCATACAATTCATGTACCTAGCTTGTTACAAATGTAATTAACACGAGGACCAATGAGGGGTTTGGTGAGATATCTGCAAGTTAATCAGTCGACTTCATAAAATTGACAATCAATCTCAATGTGTTTGTCTTCTCATTAAATATTGGATTTGATGCATAATGTCAACAAACACAGATAAATTCTAGTGTTGAACTTTCCAAACCAAACCTGCAATATTGGTTCAGACCATAGAGTGATTCACATAATCGACATACAAGGCTACTAAACTCCCCCTGAACAACGACGTGCTCAAAACCTAGTATAAAGTATATGGATCATGTTGGAATCAATAAACGAGTCGATATTAAACAAGTCACCGAGAAACTGGTTGAAACATGCTCATATGTCGAGGTATTAGATTTGATAGCTAAAAGTGGTCACAATCTAAGAAATAAAATTATATAGGTAGGGTCGAAATGATGTCACGATCTAACTAGAGAATGGAAATTATATAGGATAGTTCGAATTTATGAAACGACCCTATTGAAAGAGAAATAATATGGGTAGGGTTGGAATGATAACATAGACCTACACAAATCAGATTTGAGGAGTTATCGGAAAGATGAATGGAACTATGCAAATCAAATCTGAGTCACTGAAAGGACACATGATGCTATGACACTCAGATATGAGAAAATAGTTTGGAAAATTACATGGCACTACACAAATTAAATATGAAAAGTGATTCGAAGAGATGTACGGTGCTACGCAAATCAGATATGCAAAAAAAAAGGGTAGTCATTGGAAGGATGGCTCGATGCTACACAAATTATATATGAAAAAGTATTCACTAGAATGATGGCACAATGCTACACAAATTTAATATGAAAAAGTAGTCGGTGGATGATGGCACGATGCTACAAAAATTAAATATGAAAAAGTAGTCACTGGAATGATGGCATGGTGCTACATAAATTAGATATAAGAAATTAGTCACCCGAATGATACACAGTGAGACAACTTTTGCTAACATAATCTTAGCAAGAGGGGAGGCATATATGGATAATAGCCGCTCGCCGGCTGCGGAAGCTCTTTGATTGTTTACCAAGATCATAAAGACCCGTCTCACTCGATGTTGGGGCCCCCCAAATCAAAATTGTCCACGCAGCAGATGTTAAGCACTGGACATTGAGATGGGGTGTTAAAGAATGTCAAATAGTCCCACATCAGTAATTAATGAGATGGGTGGAATCCTTAGAAGGCTTGGGAAATCCTCCTCCCTTTGATCTAGCTTTTGGGGTGTGAGTTAGGTGTAAGACCTAATTCAACATCTGCAATAGAGGAGATTTCCATTGGACTAGTTAAAAGACTTAGATAGCACCGGGTTTACGTAAGAAAAAGTTCATGTACAGAAAAGAAATTAGATTAGTCATTGCACTAGAGCGTCCAGGAACCTCCTGCTTCGGGGCCATCTCCTTTTTTACCAGTCGAGTTGCCCTGTCAACCCTTTATGGCGCTTGCTTCTTAGCTAAAACTCATAGAGCGCAAACATCATAAATGAGAACTAAACATAGTATGACTGCCTAGCGCACGGGGAATGAATTAGCTATTTCACTCGAGAGAGAAATTGTTGAGTGAGTGATCCGGCCTCTAGCACTTCATTGATGGATATGTCACATGTCTTCAAAAAACCCGACCTCAGTAGAAAACGAATGGCAAAGCTCTCATTTACACTAGCATAGAGTTAGCCGATGCTTATTCCCTAGATACCATCATTGCTTCTTCTCTGGAGAAAGAAGTTCACAACTCATGGGCCTTCTACCTCCGATTGAATAGCGAGTCAATCATAATCCATATTTCGTATTTGAATAGGTACTACCAATCCATTTTAACTGAATTTTTCATCAACGTCAAAGCAAAGAACTATGTTTCTTTCCTTCGAAGCTCCAGGATGAAGATACTATTTTTACGAAAAATTGTTTAAAAAAATTAAGTCATGTTTGCAAAACCCCTTTGATTGGCAAGTTGATTCTTGTCTTGATCAGAACATCTTTCAGTCTAAGGCATCTGTCTTCACAGATTCTCTCAATCTTTCTCTTATTCTCATAGTGTAGATAGTTGAGATAACTTGATATGATTGTGGTCAGGTATACACTCTATAAATTCATTTTATACACCAGTTTCCCATTCTAATAATGATTTTTTTATGGACTTATCAAAAGAATATTAACTGTGTATATTTGAATCATTTTTTCCAGCTTTACCCGCCAATAGATTGGTTGGTTGGGTCATCTTTACCTTCAAAGTTCAGTCCAGACATTATTGAAGCAGTTCTAACTGATCTCACACCACAAAATGTCAG</genome_strand>
        <mrna_strand>TTGATTGGACATGAAGGAGAAGGATCCTTGTTTTATGTCTTAAAGAAGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGCAACAAGCTTATCGGCTGGAGAGTCAGGCGGCGGTCATCACTTCTCCTTTTTTTGAAGTTTATATTAGTCTGACTGATGCTGGGCATG....................................................................................................................................................................................ACCATTTTGAGGATGTTGTGGCACTGGTCTTCAAATATATTCACCTTCTGCAACAAGCTGGTGCCCGCAAATGGATATTTGATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCTGCTATATCTGAAACGAATTTCCATTATCAAGACAAGAGTTCTCCCATCGGTTATGTGGTATATGTTGCGTCGAACATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACCCGCCAATAGATTGGTTGGTTGGGTCATCTTTACCTTCAAAGTTCAGTCCAGACATTATTGAAGCAGTTCTAACTGATCTCACACCACAAAATGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E705821" ref_strand="+" ref_description="SGN-E705821 [FA28AH12]">
      <seq>ctttgtactactgttcattaatacttagggaacactcatggtcatgggatgatgaatgtgaagctcttactaatcttgaaattgatgaccttgttaaattttatcctctgcttctatcaaggacatttctggagtgttatttagcaggaaacatcgactcaaaggaagcagtttcaatgatccagcacgttgaagatgccttgtacaagggttcccagcctctatctcgggccctttttgcgtctgagcattcgtcaagtagaattataaatcttgaagagagcaagaattatttctatgctgcagagggcctaaatacatctgatgaaaattctgctcttgtccactacattcaggtgcattcagatgaatacatcaagaatgtaaaactgcagctatttgctctgatagccaaacaaccagctttcgaccagcttagatctgttgagcagcttggttacatcacatcactttcacggacgagtgatgctggtgttcgtggactgcagcttatagttcaatcatcggtcaaggatcctagatatatcgagtcgcgattccaggcatttcttaagacgttggaaactcagcttcatgacatgtcagatgatgagtttaagaaaaaagtcaatgctcttattgatattaagcttgagaagtttaaaaacttaccggaggaaaccaattttttctggtgggaaatttctagtggcaccctcaaatttgatagaattgaaaatgaggttgcagcacctgagcagataactaaaacggacctgatccatttctttaatgaatatgtgaacgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="39948" stop="44369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40248" g_stop="40394" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40395" i_stop="40477" i_length="83">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40478" g_stop="40686" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="356" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40687" i_stop="41429" i_length="743">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41430" g_stop="41554" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="481" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41555" i_stop="41670" i_length="116">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41671" g_stop="41722" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="533" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41723" i_stop="41819" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41820" g_stop="41906" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="620" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41907" i_stop="43220" i_length="1314">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43221" g_stop="43343" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="743" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43344" i_stop="44001" i_length="658">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44002" g_stop="44069" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="811" r_length="68" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E705821" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40248" e_stop="40394"/>
          <exon e_start="40478" e_stop="40686"/>
          <exon e_start="41430" e_stop="41554"/>
          <exon e_start="41671" e_stop="41722"/>
          <exon e_start="41820" e_stop="41906"/>
          <exon e_start="43221" e_stop="43343"/>
          <exon e_start="44002" e_stop="44069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTACTACTGTTCATTAATACTTAGGGAACACTCATGGTCATGGGATGATGAATGTGAAGCTCTTACTAATCTTGAAATTGATGACCTTGTTAAATTTTATCCTCTGCTTCTATCAAGGACATTTCTGGAGTGTTATTTAGCAGGTTCTTTTTTCTTCCCTACTAGACTTCTCTAGGATTTTTGTCAGCTGTGTAGCATATTCACCCTTTTGATTATCCCTCTTCAGGAAACATCGACTCAAAGGAAGCAGTTTCAATGATCCAGCACGTTGAAGATGCCTTGTACAAGGGTTCCCAGCCTCTATCTCGGGCCCTTTTTGCGTCTGAGCATTCGTCAAGTAGAATTATAAATCTTGAAGAGAGCAAGAATTATTTCTATGCTGCAGAGGGCCTAAATACATCTGATGAAAATTCTGCTCTTGTCCACTACATTCAGGTACATGTGAAGTTACAACTTTTGTTCTTTTTTTTCAATGTCTTTTTTTAGTAGTATCATATATATGACTGGATGCCCCATGGGAAAAGTCATATTCTTCTGCAAAGGCTTTTTTTTGTACCTCCTTACAACAACATATCCAGTGTAATCACATAAGTGCAGTTTGGGGAGGTTTGGGTGTATGCGGACCTTAAGTCTAATTGTCTACCTTTACCCATTATACCCCTTATATATGGGGTTTCCCTTTTGTTTAGCAATAAACTCCTACTTGTATGGAACAAGTATTGTTAGAACCGTTAAAGAGAAAAAGCAAGAATCGAATGATCAAAACTGGTTGGAGCTTTTAAAGAATTCAAAACCTAAAATGTCTATAATGCACAATCAATTTATCTTTTTCGAAATTTGGCCATTCTACTGACTTGTGGCTAGACAAATAATTTGTATGTATTTAAGCTCTCAAAAGTTCACAATGAGCAGAATGCAAAATCTTTCTATTGAACAACTTTATCCTGCTGGATATCTTATCTTTATAAGTTGGCTCTATATGAGTCCTAAGTTGCACAGACTCTTCACTTTCGATGCCGCACCCGTGCCGAATTCTCCAAAAATACACTACTTTTGGAGAATCCGACAAGCACCCGTTGACATTTGGAAGAGTCCGAGCAACATAGTATGAGTCTGGCCGTCTTTCTTAAGTTGGCTGTTTGGAAGGATCTGATACCAAAGCAAACTAAAATATGCAGGTGCATTCAGATGAATACATCAAGAATGTAAAACTGCAGCTATTTGCTCTGATAGCCAAACAACCAGCTTTCGACCAGCTTAGATCTGTTGAGCAGCTTGGTTACATCACATCACTTTCACGGACGTATGCCAACACTTCTCATTTTAATACTCTGTGAATGTCTCAACTCTTGTGACATGTGGCACATCTATTAAATTTTATTTCACTGCTGAAACCAATGTAATGTGGTTAAACTGTAGGAGTGATGCTGGTGTTCGTGGACTGCAGCTTATAGTTCAATCATCGGTCAAGGTAAACACATCATATCTTCTGTATGTAAGCCAGCGAAGAAATATTACAAAAATCCTTTTACTTCAGTTTGAGAGACTAATGGTTAGCCACAATACAGGATCCTAGATATATCGAGTCGCGATTCCAGGCATTTCTTAAGACGTTGGAAACTCAGCTTCATGACATGTCAGATGATGAGTTTAAGGTCAATTATTGAACCTCCTTTTGAGATTTTCATTCAGAATAGGTACCATTTTCAGGGTTCAAATCTCCAGAAGGTAAAAACAAAAATTGGATAATTTCTTCTCATCTGCTTGAGCCTTGGTAGGCAGAGTCCAGTACTAGGGGTTTTAACCAAACTAAGCCATTATATAAAGCCATTCATCAAAATAATATGTTTTTCTAAAATTTTACAAAACTAGTATAAACGTATTCCACAGTAACGTTTTAGGATATATTTTATTTTTTAAAAGTTGATGGCGTCAGATTGATATACGTTACTCAAAGTAATGTTTTACTCATAAAACGTTACTCACAGTAACATTTTAGGAGTAAAACGTTACAGAAAATAACGTTTTAAAAGTAAAATGTTACTTATAGTAACGTATATCAACCTAATGCTGTTAGTTTTTAAAAAATAAAATATACCCTAAAACGTTACCGTGAAATACGTTTATACTAGTTTTGTAAAATTTTAGAAAAATATATTACTTTGGTAAATTGTTTTATATAATGACTTAGTTTGATTAAAAATTCCCAGTACTAGTCTAGTTGCAGACAAGCTGAATTGGCCACTGCTATTATAAAAAGAACTATACCAGAAGAACAACAATAACACAATGGCATCATTGTGACAACTCTCAGGAAAGTAATATTACCAGAAGTATCTACACGGAAATATCTTAAGATGAAGATCATAAATACCCAGAATAATGGTAAAAAGTTTGAGAGGGTAGGCAAAGTCAATATGAAAAATATTTGCTATCATGAGGAACGCGGTTTTTACAAGGCAGCATAAATTGTGACACTTCAATCAGTAAAAATTAGAGGTGTGCTTAGTTTGAATACTGTTTGATATTGTCATTACATCTTCATCAGATGCGCTCAGTAACCCTGCAAGAGAAATTTATTTGGCCGACTGTTCTTGTACTTAACAATCATTTGCTGCTTTTGCTGAGGATAGAATGTGATGTATCTGCTATCCTGATCTTCTGGTACTCAGAAAATTGATAAGTCCATGTGGCTTCATATGTTATGTTCTTTCAATGCCTTTCTTCTATTAGCATCACTGGTCCAAAGGGCAGGTCACAGACCGACTTCTTGGTCATCAAAAAAAAATAAAAAATAAGAATAATAACAATAAACCCGGTCAGTAACAAACCAATAAAGTCAAAATCAAATGATGGTGCTGAATAAATTGTTAGGTTGATGTGAAGCTTATTTATTATTTCCACTTGTCTGCAATCTTATATATTTTGCCTCATCCTCTAAGATTTTGATTTTATCATATACAATGCAGAAAAAAGTCAATGCTCTTATTGATATTAAGCTTGAGAAGTTTAAAAACTTACCGGAGGAAACCAATTTTTTCTGGTGGGAAATTTCTAGTGGCACCCTCAAATTTGATAGAATTGAAAATGAGGTATGGTTTTCTTTTATTCATATGCCATTTTTTATTTCCATGAATTGAATTGACAGGTAAAAGGAGATTACTGTATGTCTTTCCTTCTCCCTTTCCGGGAGGCGGAGGATAATTGGCATGGGTGGTAGCTGTTTGGCACCTTTGGGTCAAACTAAAGGGATACAAAGAAAGAACTCTTCCAAGTCTTTCTTACGAAATGTTGACTCATTGAGGAATATAATTCTTGATTTCTTCCCATCGACCTAAGCCTTGGTAGGGGAAGGTGTTGGTGGATAGTCAAAGTGCACGAAAGTAGGCACGAATACCTCTATTGTAGAAAAATATTCTTGCTTTCTGAAATGCTGAATAAACCAGTAAAAGGTACTATGGCTCACTGTTCCCTGAAAGTTAATAATCTTCCTTTTTTTAGTTTCTGGGAGTTCATAAGGTACTATTTGGCAGGCTTTATTTAAGCTGAGGGTCTATAGGAAACAACCTCTCTATCTCTACGAGGTAGGGGTAAGGTCAATGTACACTCTATCCTCCCTAGACCACAGTAGTGAGATTCCACTGGGTACTGGATATGTTGTTGAGAGTTCACAAGGTAGGATAATTGCCTCATGGACGTACTTTCTCTCTGAAACAAGCATTTAAACTGACTTATATTTTCATGAATCAGGTTGCAGCACTGAAGCAGATAACTAAAACGGACCTGATCGATTTCTTTAATGAATATGTGAACGTTGG</genome_strand>
        <mrna_strand>CTTTGTACTACTGTTCATTAATACTTAGGGAACACTCATGGTCATGGGATGATGAATGTGAAGCTCTTACTAATCTTGAAATTGATGACCTTGTTAAATTTTATCCTCTGCTTCTATCAAGGACATTTCTGGAGTGTTATTTAGCAG...................................................................................GAAACATCGACTCAAAGGAAGCAGTTTCAATGATCCAGCACGTTGAAGATGCCTTGTACAAGGGTTCCCAGCCTCTATCTCGGGCCCTTTTTGCGTCTGAGCATTCGTCAAGTAGAATTATAAATCTTGAAGAGAGCAAGAATTATTTCTATGCTGCAGAGGGCCTAAATACATCTGATGAAAATTCTGCTCTTGTCCACTACATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCAGATGAATACATCAAGAATGTAAAACTGCAGCTATTTGCTCTGATAGCCAAACAACCAGCTTTCGACCAGCTTAGATCTGTTGAGCAGCTTGGTTACATCACATCACTTTCACGGAC....................................................................................................................GAGTGATGCTGGTGTTCGTGGACTGCAGCTTATAGTTCAATCATCGGTCAAG.................................................................................................GATCCTAGATATATCGAGTCGCGATTCCAGGCATTTCTTAAGACGTTGGAAACTCAGCTTCATGACATGTCAGATGATGAGTTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAGTCAATGCTCTTATTGATATTAAGCTTGAGAAGTTTAAAAACTTACCGGAGGAAACCAATTTTTTCTGGTGGGAAATTTCTAGTGGCACCCTCAAATTTGATAGAATTGAAAATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGCACCTGAGCAGATAACTAAAACGGACCTGATCCATTTCTTTAATGAATATGTGAACGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E373312" ref_strand="+" ref_description="SGN-E373312 [TUS-31-D1]">
      <seq>tttttttttcttggaactaaaacatcttcaatcaaataaagtattaaaatactttcaattcatacaaacccccatatacacaaacttgatcaacaaacaatcacatcccagacttcacataacttttacttaaatcactcatttaatctctctttttctttcttttctattccttcaaaccaatcaacccagcatatcataaacaatatatacaataatcacacaataaaataagaatttaacttatatacgctgatatcacgtataaacacaaacttgacaccgcagtccattatattctcactttcaatcttcacaaaaatgagtattcatagttccgtacatacatagacttagtccaatgtgtgaacgataaaatctgcagtgtcaacatgcatggaagcctcgacaccataactctccatagagttcgattcttgattatgagcaataaacccaagtttctcttttttacaacgacgaggaaaatctgaagcattgccatgaatgttggagggtggatggtaatacattcgagcagtctgagggcaatgagaatgaaacctagctactattctcacacctacatccactatctccgtgtatttacccatggattatgtctttattcacaatgctttgatgtataagaaaacttgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="45368" stop="46628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45666" g_stop="46328" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E373312" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45666" e_stop="46328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTTCTTGGAACTAAAACATCTTCAATCAAATAAAGTATTAAAATACTTTCAATTCATACAAACCCCCATATACACAAACTTGATCAACAAACAATCACATCCCAGACTTCACATAACTTTTACTTAAATCACTCATTTAATCTCTCTTTTTCTTTCTTTTCTATTCCTTCAAACCAATCAACCCAGCATATCATAAACAATATATACAATAATCACACAATAAAATAAGAATTTAACTTATATACGCTGATATCACGTATAAACACAAACTTGACACCGCAGTCCATTATATTCTCACTTTCAATCTTCACAAAAATGAGTATTCATAGTTCCGTACATACATAGACTTAGTCCAATGTGTGAACGATAAAATCTGCAGTGTCAACATGCATGGAAGCCTCGACACCATAACTCTCCATAGAGTTCGATTCTTGATTATGAGCAATAAACCCAAGTTTCTCTTTTTTACAACGACGAGGAAAATCTGAAGCATTGCCATGAATGTTGGAGGGTGGATGGTAATACATTCGAGCAGTCTGAGGGCAATGAGAATGAAACCTAGCTACTATTCTCACACCTACATCCACTATCTCCGTGTATTTACCCATGGATTATGTCTTTATTCACAATGCTTTGATGTATAAGAAAACTTGAACA</genome_strand>
        <mrna_strand>TTTTTTTTTCTTGGAACTAAAACATCTTCAATCAAATAAAGTATTAAAATACTTTCAATTCATACAAACCCCCATATACACAAACTTGATCAACAAACAATCACATCCCAGACTTCACATAACTTTTACTTAAATCACTCATTTAATCTCTCTTTTTCTTTCTTTTCTATTCCTTCAAACCAATCAACCCAGCATATCATAAACAATATATACAATAATCACACAATAAAATAAGAATTTAACTTATATACGCTGATATCACGTATAAACACAAACTTGACACCGCAGTCCATTATATTCTCACTTTCAATCTTCACAAAAATGAGTATTCATAGTTCCGTACATACATAGACTTAGTCCAATGTGTGAACGATAAAATCTGCAGTGTCAACATGCATGGAAGCCTCGACACCATAACTCTCCATAGAGTTCGATTCTTGATTATGAGCAATAAACCCAAGTTTCTCTTTTTTACAACGACGAGGAAAATCTGAAGCATTGCCATGAATGTTGGAGGGTGGATGGTAATACATTCGAGCAGTCTGAGGGCAATGAGAATGAAACCTAGCTACTATTCTCACACCTACATCCACTATCTCCGTGTATTTACCCATGGATTATGTCTTTATTCACAATGCTTTGATGTATAAGAAAACTTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E373313" ref_strand="+" ref_description="SGN-E373313 [TUS-31-D1]">
      <seq>gttcaagttttcttatacatcaaagcattgtgaataaagacataatccatgggtaaatacacggagatagtggatgtaggtgtgagaatagtagctaggtttcattctcattgccctcagactgctcgaatgtattaccatccaccctccaacattcatggcaatgcttcagattttcctcgtcgttgtaaaaaagagaaacttgggtttattgctcataatcaagaatcgaactctatggagagttatggtgtcgaggcttccatgcatgttgacactgcagattttatcgttcacacattggactaagtctatgtatgtacggaactatgaatactcatttttgtgaagattgaaagtgagaatataatggactgcggtgtcaagtttgtgtttatacgtgatatcagcgtatataagttaaattcttattttattgtgtgattattgtatatattgtttatgatatgctgggttgattggtttgaaggaatagaaaagaaagaaaaagagagattaaatgagtgatttaagtaaaagttatgtgaagtctgggatgtgattgtttgttgatcaagtttgtgtatatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="46627" stop="45435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46327" g_stop="45735" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E373313" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46327" e_stop="45735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAGTTTTCTTATACATCAAAGCATTGTGAATAAAGACATAATCCATGGGTAAATACACGGAGATAGTGGATGTAGGTGTGAGAATAGTAGCTAGGTTTCATTCTCATTGCCCTCAGACTGCTCGAATGTATTACCATCCACCCTCCAACATTCATGGCAATGCTTCAGATTTTCCTCGTCGTTGTAAAAAAGAGAAACTTGGGTTTATTGCTCATAATCAAGAATCGAACTCTATGGAGAGTTATGGTGTCGAGGCTTCCATGCATGTTGACACTGCAGATTTTATCGTTCACACATTGGACTAAGTCTATGTATGTACGGAACTATGAATACTCATTTTTGTGAAGATTGAAAGTGAGAATATAATGGACTGCGGTGTCAAGTTTGTGTTTATACGTGATATCAGCGTATATAAGTTAAATTCTTATTTTATTGTGTGATTATTGTATATATTGTTTATGATATGCTGGGTTGATTGGTTTGAAGGAATAGAAAAGAAAGAAAAAGAGAGATTAAATGAGTGATTTAAGTAAAAGTTATGTGAAGTCTGGGATGTGATTGTTTGTTGATCAAGTTTGTGTATATGGGG</genome_strand>
        <mrna_strand>GTTCAAGTTTTCTTATACATCAAAGCATTGTGAATAAAGACATAATCCATGGGTAAATACACGGAGATAGTGGATGTAGGTGTGAGAATAGTAGCTAGGTTTCATTCTCATTGCCCTCAGACTGCTCGAATGTATTACCATCCACCCTCCAACATTCATGGCAATGCTTCAGATTTTCCTCGTCGTTGTAAAAAAGAGAAACTTGGGTTTATTGCTCATAATCAAGAATCGAACTCTATGGAGAGTTATGGTGTCGAGGCTTCCATGCATGTTGACACTGCAGATTTTATCGTTCACACATTGGACTAAGTCTATGTATGTACGGAACTATGAATACTCATTTTTGTGAAGATTGAAAGTGAGAATATAATGGACTGCGGTGTCAAGTTTGTGTTTATACGTGATATCAGCGTATATAAGTTAAATTCTTATTTTATTGTGTGATTATTGTATATATTGTTTATGATATGCTGGGTTGATTGGTTTGAAGGAATAGAAAAGAAAGAAAAAGAGAGATTAAATGAGTGATTTAAGTAAAAGTTATGTGAAGTCTGGGATGTGATTGTTTGTTGATCAAGTTTGTGTATATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E289120" ref_strand="+" ref_description="SGN-E289120 [cLES-18-O22]">
      <seq>gttcaagttttcttatacatcaaagcattgtgaataaagacataatccatgggtaaatacacggagatagtggatgtaggtgtgagaatagtagctaggtttcattctcattgccctcagactgctcgaatgtattaccatccaccctccaacattcatggcaatgcttcagattttcctcgtcgttgtaaaaaagagaaacttgggtttattgctcataatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="46627" stop="45803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46327" g_stop="46103" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E289120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46327" e_stop="46103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAGTTTTCTTATACATCAAAGCATTGTGAATAAAGACATAATCCATGGGTAAATACACGGAGATAGTGGATGTAGGTGTGAGAATAGTAGCTAGGTTTCATTCTCATTGCCCTCAGACTGCTCGAATGTATTACCATCCACCCTCCAACATTCATGGCAATGCTTCAGATTTTCCTCGTCGTTGTAAAAAAGAGAAACTTGGGTTTATTGCTCATAATCAA</genome_strand>
        <mrna_strand>GTTCAAGTTTTCTTATACATCAAAGCATTGTGAATAAAGACATAATCCATGGGTAAATACACGGAGATAGTGGATGTAGGTGTGAGAATAGTAGCTAGGTTTCATTCTCATTGCCCTCAGACTGCTCGAATGTATTACCATCCACCCTCCAACATTCATGGCAATGCTTCAGATTTTCCTCGTCGTTGTAAAAAAGAGAAACTTGGGTTTATTGCTCATAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E249490" ref_strand="+" ref_description="SGN-E249490 [cLEF-56-K18]">
      <seq>agaatctttaacacttgagttcaagaactcaaaaagaacataaagctctcatttttactcttgtgtgtgtgtaaaattgaggttgtggggtttcaatgttagtccaagatcgtgaagatggtatttctaaatcaccaaaaggaccaaaacccattagagaaagatcatcaatccctctatcaagaaccccaaatcgtttaaatggagccaagaatcttgatttttctacatgggtttctgaaaatctttacaaaatcctcaccattttgctcttaatctctaccattgctattttcttctaccttcgtagtgctgctggtgataccactactctcctttgcttacagtcaactcaaactcactccatcagacctgagttccctaaaatcaactggaataacattccagctatcttagataagtctactccttatgcaaattttcgatctgagaaatgggttgtggtttctgtttcagattacccgtcggattcgcttagaaagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="67029" stop="68135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67329" g_stop="67835" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E249490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67329" e_stop="67835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCTTTAACACTTGAGTTCAAGAACTCAAAAAGAACATAAAGCTCTCATTTTTACTCTTGTGTGTGTGTAAAATTGAGGTTGTGGGGTTTCAATGTTAGTCCAAGATCGTGAAGATGGTATTTCTAAATCACCAAAAGGACCAAAACCCATTAGAGAAAGATCATCAATCCCTCTATCAAGAACCCCAAATCGTTTAAATGGAGCCAAGAATCTTGATTTTTCTACATGGGTTTCTGAAAATCTTTACAAAATCCTCACCATTTTGCTCTTAATCTCTACCATTGCTATTTTCTTCTACCTTCGTAGTGCTGCTGGTGATACCACTACTCTCCTTTGCTTACAGTCAACTCAAACTCACTCCATCAGACCTGAGTTCCCTAAAATCAACTGGAATAACATTCCAGCTATCTTAGATAAGTCTACTCCTTATGCAAATTTTCGATCTGAGAAATGGGTTGTGGTTTCTGTTTCAGATTACCCGTCGGATTCGCTTAGAAAGCTTG</genome_strand>
        <mrna_strand>AGAATCTTTAACACTTGAGTTCAAGAACTCAAAAAGAACATAAAGCTCTCATTTTTACTCTTGTGTGTGTGTAAAATTGAGGTTGTGGGGTTTCAATGTTAGTCCAAGATCGTGAAGATGGTATTTCTAAATCACCAAAAGGACCAAAACCCATTAGAGAAAGATCATCAATCCCTCTATCAAGAACCCCAAATCGTTTAAATGGAGCCAAGAATCTTGATTTTTCTACATGGGTTTCTGAAAATCTTTACAAAATCCTCACCATTTTGCTCTTAATCTCTACCATTGCTATTTTCTTCTACCTTCGTAGTGCTGCTGGTGATACCACTACTCTCCTTTGCTTACAGTCAACTCAAACTCACTCCATCAGACCTGAGTTCCCTAAAATCAACTGGAATAACATTCCAGCTATCTTAGATAAGTCTACTCCTTATGCAAATTTTCGATCTGAGAAATGGGTTGTGGTTTCTGTTTCAGATTACCCGTCGGATTCGCTTAGAAAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E544583" ref_strand="+" ref_description="SGN-E544583 [TUS-66-P21]">
      <seq>gtttaacaaagtttttggtagcgtggagatccagtaaacacaggttgtttgaaaagattttggagttaagctatgcaatggctgaagaaggcttttggacagtgcaagatgtcaagttcactgctgcatggcttcaagatctgcttgctgttgggtacatgcagcctcggctaatggctttagagttggatcggccaagggcaagcataggacatggtgacaggaaggaatttgtacctcagaagttgccatctgtgcatcttggggtagaagagattggtacagtgaattatgaaatcgccaatttgattaagtggaggaagaattttggcaatgttgtgctcataatcttttgtagtggacctgttgaacgtactgccttggagtggagattactatatggcaggatatttaagacagttatcatattgtctgaccagaagaatgtagatcttgccgttgaaaaaggaaatttggattatatgtacaggtatgcaccaaagatacttgataggtacactagtgcagaaggctttctatttctccaggacgatactatccttaattactggaacttacttcaagcagataagtcaaagctctggataggaaacaaggtatccaagtcatggcacgctgttccagtagctaacaaatcggactggtttgtgaagcaagctgacgttgttaagaaagtggtagcaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="68355" stop="72194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68655" g_stop="69144" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69145" i_stop="70868" i_length="1724">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70869" g_stop="70995" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="617" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70996" i_stop="71802" i_length="807">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71803" g_stop="71894" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="709" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E544583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68655" e_stop="69144"/>
          <exon e_start="70869" e_stop="70995"/>
          <exon e_start="71803" e_stop="71894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAACAAAGTTTTTGGTAGCGTGGAGATCCAGTAAACACAGGTTGTTTGAAAAGATTTTGGAGTTAAGCTATGCAATGGCTGAAGAAGGCTTTTGGACAGTGCAAGATGTCAAGTTCACTGCTGCATGGCTTCAAGATCTGCTTGCTGTTGGGTACATGCAGCCTCGGCTAATGGCTTTAGAGTTGGATCGGCCAAGGGCAAGCATAGGACATGGTGACAGGAAGGAATTTGTACCTCAGAAGTTGCCATCTGTGCATCTTGGGGTAGAAGAGATTGGTACAGTGAATTATGAAATCGCCAATTTGATTAAGTGGAGGAAGAATTTTGGCAATGTTGTGCTCATAATCTTTTGTAGTGGACCTGTTGAACGTACTGCCTTGGAGTGGAGATTACTATATGGCAGGATATTTAAGACAGTTATCATATTGTCTGACCAGAAGAATGTAGATCTTGCCGTTGAAAAAGGAAATTTGGATTATATGTACAGGTTAGTCATTGGCATCTTTTTTCTTAACATTTTAGTTTTTATGGTAATAAGTTATGGTTTTTGTATAGACGGGGTTATATGGTTCTTTGGACTGATTGGTTCACAGTTTTGTTTACTTCTAAGAGGTCCATTGTTTAAACCTGGACATGTATCCTTTGAGCTGAGGGGTATCAGAAACAGCCTCTCTACCTCCAAGCGTACACTTAACCTTCCCTAGAGCTCACTTGGGTATGTTGTTGTTGTTCTGTACAGAGGGGGTAGTAAGTATGAACTTGCTCTGCCTTGTTAGCGTATAAAGCATATCATCGATTGAATTATAACCTTTTTTTCAAATCTTTTTTGTTTGGTATACATTTCTTTCATTTGTTTTGGTAGAGGTGATCATAAGATAAATCAGTGAGCTCACTGAGTGTCGCCATGCAAGAGTGAAAACTTATAACTTGTCTCTTTGATTGTTGAAAGCTCATTAAATGTAATGGACAGTTTTCTTAAAACATCTTATTCCTTTGCTTCATAATCTAATTCAGTTTCTAATAAAACTTTGGTATATACCTGTTGCAATTTGCGACTCTTGTTATACCAACCAGTAAATCAGTGCTAGCAGTAAATCAGTTGTTTTTTTGTGTAAAGAAGAGGGTATGGAAGTAGCAGAACAGTTGGTAGATTTCCTAGGATCTATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACATTTTTAAAAAAGAAAAGAAAAGTGGTAACATATGAAAAAATACTATTATTGACGTGTGTGACCACCTCATCTAAAAGCCTATGCTGCTAGAGAGTTCACACTTTTGTTTACTTCGATACATCTTCAACACGCTCCTTCACGTGCATGTTTGATTCATTTACCAAGCGTGTGGAAACTCATTTTGATAATGGGTAGCGGTGAATGGGAGTTTAGTGCACCGGATTGCTTTTTAATGGGTGACCGTGAGACTTGAGCATCGGATGATACCAGATTAAAGTGTGTGACAATCTCATCTAAGATCATCTCCAACCCAACACTATTTTCGTGTGTGAATAGTGTCGCATCAAATTTAGTGTGACACTATTCATCACTTCTTCATTATTTTAATATTATTATTATTATATAACATTTTTGAAAATGTAAATGAAATAAAAATAATTATATCATATTGAAGAGAGAAAAAATATAAAGATAATATTTCTTCTTAGAGTAAAAGTTTGGTGTTCTGGGTTGGAGATGCCCTAGAAGTCGAAGCTGCTAGAGAATTTATTTACTGAATCATATCTCCAACCATGAAAAAAAATGTTTTACTTAAAAAAAGCAAAAAAGAAACCGAGTGTTTGCGAGCATTTCTTTTGTATGAGACATCAACAATTCCTCAGTCTCAAATGATTTGAGAGAAGCTATATAAATCCTCATTGACCATATTTTTCCATTTAATGCTTCTCTGTACTCCCTACTTTTATTTATGTATGACGACCTCTCGTCTGAAATGAGTATTTTTTCCAGTACCCTCTATCCATGCTTGCACATGTTATTTATTACGTATCATTTAAAGCTCCACACTGTCACCTTTTTAAGGGAATATGTGGTTTCATGTTGTCGAATTGCCTGCAGGCAATCATGTTAGTTCAATTTGTATCCTAGAAACATTCTTGATTAAATACACTGTTGGCAAATTCTGTTTCAGGTATGCACCAAAGATACTTGATAGGTACACTAGTGCAGAAGGCTTTCTATTTCTCCAGGACGATACTATCCTTAATTACTGGAACTTACTTCAAGCAGATAAGTCAAAGCTCTGGATAGGAAACAAGGCAAGTACAAATATGAAGTCCTTATTTTTGGTATTTAGTGGAAGGTTTTTACTAATTGTTACTTAATACAGATTCAGCCAATTCCTACTTTTTATGGCTAAACTAAAGAAATTTACTGTTCACTGGTTTCTTCTGTTGCTTGTACTTCTTGCTGTTATTCAAAGGGAATTTAGGGTAGTATACATAACAACACTCCAAGTGGGTCTGGGTAGGGTGGGATGTAAGCAGACCTTATCCTTAGGGAGGATGTTTCCGATATACCTTCATCTCAAAAGAGAAGTTTTCGAAGCAAGGAAATATGGTAGCAAGATACAAAGCAAGTGAAGTAGCAGATAGTACCACACATTGAAGAATAAGAAACTCCGACTACTAACTACTACTAGTCTACTACTACTAGTAGCAGGGGAGTAGATGAGGCTATCCCCCTGCCTCTCCCACATGAAGTGCGGTAACACTCGGCTACCTACTAACCGTCTACTCTAATCATTGACATCCAGTACATATGTAGAATAATATATGTAAGGTTCTTTATTTCTTTATTCGGCTTGGAGAGGAGATAATGTATATGAAACCCGAGACCATCGTCATGAGGAAAGAGTTCCATCCTATGATATGTTTAGACATAGCTTGAGTTTTTTACTTGTGGTTAAAGCGCACTTGCTTGATCATCCAACTGCCTCCAGGGAGAGAGGGAAAAGGGATTTTTTTTGTAAGTTCTTAATTTATTGTTGCAAATGATCAACTCTCAAACCTGTCCTACCCAAATACACAAGCAATAGGCGTCTCATTTCTTTCTTTTGCGTATAGGTATCCAAGTCATGGCACGCTGTTCCAGTAGCTAACAAATCGGACTGGTTTGTGAAGCAAGCTGACGTTGTTAAGAAAGTGGTAGCAACAAT</genome_strand>
        <mrna_strand>GTTTAACAAAGTTTTTGGTAGCGTGGAGATCCAGTAAACACAGGTTGTTTGAAAAGATTTTGGAGTTAAGCTATGCAATGGCTGAAGAAGGCTTTTGGACAGTGCAAGATGTCAAGTTCACTGCTGCATGGCTTCAAGATCTGCTTGCTGTTGGGTACATGCAGCCTCGGCTAATGGCTTTAGAGTTGGATCGGCCAAGGGCAAGCATAGGACATGGTGACAGGAAGGAATTTGTACCTCAGAAGTTGCCATCTGTGCATCTTGGGGTAGAAGAGATTGGTACAGTGAATTATGAAATCGCCAATTTGATTAAGTGGAGGAAGAATTTTGGCAATGTTGTGCTCATAATCTTTTGTAGTGGACCTGTTGAACGTACTGCCTTGGAGTGGAGATTACTATATGGCAGGATATTTAAGACAGTTATCATATTGTCTGACCAGAAGAATGTAGATCTTGCCGTTGAAAAAGGAAATTTGGATTATATGTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCACCAAAGATACTTGATAGGTACACTAGTGCAGAAGGCTTTCTATTTCTCCAGGACGATACTATCCTTAATTACTGGAACTTACTTCAAGCAGATAAGTCAAAGCTCTGGATAGGAAACAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCAAGTCATGGCACGCTGTTCCAGTAGCTAACAAATCGGACTGGTTTGTGAAGCAAGCTGACGTTGTTAAGAAAGTGGTAGCAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E307735" ref_strand="+" ref_description="SGN-E307735 [cLEY-16-M14]">
      <seq>tttaacaaagtttttggtagcgtggagatccagtaaacacaggttgtttgaaaagattttggagttaagctatgcaatggctgaagaaggcttttggacagtgcaagatgtcaagttcactgctgcatggcttcaagatctgcttgctgttgggtacatgcagcctcggctaatggctttagagttggatcggccaagggcaagcataggacatggtgacaggaaggaatttgtacctcagaagttgccatctgtgcatcttggggtagaagagattggtacagtgaattatgaaatcgccaatttgattaagtggaggaagaattttggcaatgttgtgctcataatcttttgtagtggacctgttgaacgtactgccttggagtggagattactatatggcaggatatttaagacagttatcatattgtctgaccagaagaatgtagatcttgccgttgaaaaaggaaatttggattatatgtacaggtatgcaccaaagatacttgataggtacactagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="68356" stop="71204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68656" g_stop="69144" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69145" i_stop="70868" i_length="1724">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70869" g_stop="70904" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="525" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E307735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68656" e_stop="69144"/>
          <exon e_start="70869" e_stop="70904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACAAAGTTTTTGGTAGCGTGGAGATCCAGTAAACACAGGTTGTTTGAAAAGATTTTGGAGTTAAGCTATGCAATGGCTGAAGAAGGCTTTTGGACAGTGCAAGATGTCAAGTTCACTGCTGCATGGCTTCAAGATCTGCTTGCTGTTGGGTACATGCAGCCTCGGCTAATGGCTTTAGAGTTGGATCGGCCAAGGGCAAGCATAGGACATGGTGACAGGAAGGAATTTGTACCTCAGAAGTTGCCATCTGTGCATCTTGGGGTAGAAGAGATTGGTACAGTGAATTATGAAATCGCCAATTTGATTAAGTGGAGGAAGAATTTTGGCAATGTTGTGCTCATAATCTTTTGTAGTGGACCTGTTGAACGTACTGCCTTGGAGTGGAGATTACTATATGGCAGGATATTTAAGACAGTTATCATATTGTCTGACCAGAAGAATGTAGATCTTGCCGTTGAAAAAGGAAATTTGGATTATATGTACAGGTTAGTCATTGGCATCTTTTTTCTTAACATTTTAGTTTTTATGGTAATAAGTTATGGTTTTTGTATAGACGGGGTTATATGGTTCTTTGGACTGATTGGTTCACAGTTTTGTTTACTTCTAAGAGGTCCATTGTTTAAACCTGGACATGTATCCTTTGAGCTGAGGGGTATCAGAAACAGCCTCTCTACCTCCAAGCGTACACTTAACCTTCCCTAGAGCTCACTTGGGTATGTTGTTGTTGTTCTGTACAGAGGGGGTAGTAAGTATGAACTTGCTCTGCCTTGTTAGCGTATAAAGCATATCATCGATTGAATTATAACCTTTTTTTCAAATCTTTTTTGTTTGGTATACATTTCTTTCATTTGTTTTGGTAGAGGTGATCATAAGATAAATCAGTGAGCTCACTGAGTGTCGCCATGCAAGAGTGAAAACTTATAACTTGTCTCTTTGATTGTTGAAAGCTCATTAAATGTAATGGACAGTTTTCTTAAAACATCTTATTCCTTTGCTTCATAATCTAATTCAGTTTCTAATAAAACTTTGGTATATACCTGTTGCAATTTGCGACTCTTGTTATACCAACCAGTAAATCAGTGCTAGCAGTAAATCAGTTGTTTTTTTGTGTAAAGAAGAGGGTATGGAAGTAGCAGAACAGTTGGTAGATTTCCTAGGATCTATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACATTTTTAAAAAAGAAAAGAAAAGTGGTAACATATGAAAAAATACTATTATTGACGTGTGTGACCACCTCATCTAAAAGCCTATGCTGCTAGAGAGTTCACACTTTTGTTTACTTCGATACATCTTCAACACGCTCCTTCACGTGCATGTTTGATTCATTTACCAAGCGTGTGGAAACTCATTTTGATAATGGGTAGCGGTGAATGGGAGTTTAGTGCACCGGATTGCTTTTTAATGGGTGACCGTGAGACTTGAGCATCGGATGATACCAGATTAAAGTGTGTGACAATCTCATCTAAGATCATCTCCAACCCAACACTATTTTCGTGTGTGAATAGTGTCGCATCAAATTTAGTGTGACACTATTCATCACTTCTTCATTATTTTAATATTATTATTATTATATAACATTTTTGAAAATGTAAATGAAATAAAAATAATTATATCATATTGAAGAGAGAAAAAATATAAAGATAATATTTCTTCTTAGAGTAAAAGTTTGGTGTTCTGGGTTGGAGATGCCCTAGAAGTCGAAGCTGCTAGAGAATTTATTTACTGAATCATATCTCCAACCATGAAAAAAAATGTTTTACTTAAAAAAAGCAAAAAAGAAACCGAGTGTTTGCGAGCATTTCTTTTGTATGAGACATCAACAATTCCTCAGTCTCAAATGATTTGAGAGAAGCTATATAAATCCTCATTGACCATATTTTTCCATTTAATGCTTCTCTGTACTCCCTACTTTTATTTATGTATGACGACCTCTCGTCTGAAATGAGTATTTTTTCCAGTACCCTCTATCCATGCTTGCACATGTTATTTATTACGTATCATTTAAAGCTCCACACTGTCACCTTTTTAAGGGAATATGTGGTTTCATGTTGTCGAATTGCCTGCAGGCAATCATGTTAGTTCAATTTGTATCCTAGAAACATTCTTGATTAAATACACTGTTGGCAAATTCTGTTTCAGGTATGCACCAAAGATACTTGATAGGTACACTAGTGC</genome_strand>
        <mrna_strand>TTTAACAAAGTTTTTGGTAGCGTGGAGATCCAGTAAACACAGGTTGTTTGAAAAGATTTTGGAGTTAAGCTATGCAATGGCTGAAGAAGGCTTTTGGACAGTGCAAGATGTCAAGTTCACTGCTGCATGGCTTCAAGATCTGCTTGCTGTTGGGTACATGCAGCCTCGGCTAATGGCTTTAGAGTTGGATCGGCCAAGGGCAAGCATAGGACATGGTGACAGGAAGGAATTTGTACCTCAGAAGTTGCCATCTGTGCATCTTGGGGTAGAAGAGATTGGTACAGTGAATTATGAAATCGCCAATTTGATTAAGTGGAGGAAGAATTTTGGCAATGTTGTGCTCATAATCTTTTGTAGTGGACCTGTTGAACGTACTGCCTTGGAGTGGAGATTACTATATGGCAGGATATTTAAGACAGTTATCATATTGTCTGACCAGAAGAATGTAGATCTTGCCGTTGAAAAAGGAAATTTGGATTATATGTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCACCAAAGATACTTGATAGGTACACTAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E549066" ref_strand="-" ref_description="SGN-E549066 [TUS-66-P21]">
      <seq>ttactggaacttactccaagcagataagtcaaagctctggataggaacaagggtatccaagtcatggcacgctgttccagtagctaacaaatcggactggtttgtgaagcaagctgacgttgttaagaaagtggtagcaacaatgccggtacatttgcaagtcaattacaaagagacaatgagaagtgacgagaccttgacgatatgcagttcggagatattctacataccccgtcgttttgtatccgactttgtcgacctcattaatctagtagggaatctagacgtgcatcacaaggttgcaatgccaatgttttttacggctatggattctccacagaatttcgattcagtattgaattcgatgatttacaagaagaagtctcctggcaatttaacgacattctattcagctgaggcacctgcaattcacccatggaaagtgtcaagtgagcaagagttcataaaactgatcagagttatggctgcaggtgaccccctgttaatggagttggtatagtgtaatgatagatacttgaagagtctcacagtgaaaatgtaaaacatgtaaagtttatgtgcagctgaattctactattcttttgtacctttcattagtagggggggaatggggtgaaagaagaggttttgtgctcttgtagatttttgttgtaatactgttttaactcttaaaaattttgtggcaaagagaattgaaggagaaaacagtgcaggctttcttctgattttcattttgcttttgaatacgttttgtttctaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="70644" stop="72838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70944" g_stop="70995" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70996" i_stop="71802" i_length="807">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71803" g_stop="72538" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="789" r_length="737" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E549066" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549066" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70944" e_stop="70995"/>
          <exon e_start="71803" e_stop="72538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTGGAACTTACTTCAAGCAGATAAGTCAAAGCTCTGGATAGGAAACAAGGCAAGTACAAATATGAAGTCCTTATTTTTGGTATTTAGTGGAAGGTTTTTACTAATTGTTACTTAATACAGATTCAGCCAATTCCTACTTTTTATGGCTAAACTAAAGAAATTTACTGTTCACTGGTTTCTTCTGTTGCTTGTACTTCTTGCTGTTATTCAAAGGGAATTTAGGGTAGTATACATAACAACACTCCAAGTGGGTCTGGGTAGGGTGGGATGTAAGCAGACCTTATCCTTAGGGAGGATGTTTCCGATATACCTTCATCTCAAAAGAGAAGTTTTCGAAGCAAGGAAATATGGTAGCAAGATACAAAGCAAGTGAAGTAGCAGATAGTACCACACATTGAAGAATAAGAAACTCCGACTACTAACTACTACTAGTCTACTACTACTAGTAGCAGGGGAGTAGATGAGGCTATCCCCCTGCCTCTCCCACATGAAGTGCGGTAACACTCGGCTACCTACTAACCGTCTACTCTAATCATTGACATCCAGTACATATGTAGAATAATATATGTAAGGTTCTTTATTTCTTTATTCGGCTTGGAGAGGAGATAATGTATATGAAACCCGAGACCATCGTCATGAGGAAAGAGTTCCATCCTATGATATGTTTAGACATAGCTTGAGTTTTTTACTTGTGGTTAAAGCGCACTTGCTTGATCATCCAACTGCCTCCAGGGAGAGAGGGAAAAGGGATTTTTTTTGTAAGTTCTTAATTTATTGTTGCAAATGATCAACTCTCAAACCTGTCCTACCCAAATACACAAGCAATAGGCGTCTCATTTCTTTCTTTTGCGTATAGGTATCCAAGTCATGGCACGCTGTTCCAGTAGCTAACAAATCGGACTGGTTTGTGAAGCAAGCTGACGTTGTTAAGAAAGTGGTAGCAACAATGCCGGTACATTTGCAAGTCAATTACAAAGAGACAATGAGAAGTGACGAGACCTTGACGATATGCAGTTCGGAGATATTCTACATACCCCGTCGTTTTGTATCCGACTTTGTCGACCTCATTAATCTAGTAGGGAATCTAGACGTGCATCACAAGGTTGCAATGCCAATGTTTTTTACGGCTATGGATTCTCCACAGAATTTCGATTCAGTATTGAATTCGATGATTTACAAGAAGAAGTCTCCTGGCAATTTAACGACATTCTATTCAGCTGAGGCACCTGCAATTCACCCATGGAAAGTGTCAAGTGAGCAAGAGTTCATAAAACTGATCAGAGTTATGGCTGCAGGTGACCCCCTGTTAATGGAGTTGGTATAGTGTAATGATAGATACTTGAAGAGTCTCACAGTGAAAATGTAAAACATGTAAAGTTTATGTGCAGCTGAATTCTACTATTCTTTTGTACCTTTCATTAGTAGGGGGGGAATGGGGTGAAAGAAGAGGTTTTGTGCTCTTGTAGATTTTTGTTGTAATACTGTTTTAACTCTTAAAAATTTTGTGGCAAAGAGAATTGAAGGAGAAAACAGTGCAGGCTTTCTTCTGATTTTCATTTTGCTTTTGAATACGTTTTGTTTCT-ACAGAGAAA</genome_strand>
        <mrna_strand>TTACTGGAACTTACTCCAAGCAGATAAGTCAAAGCTCTGGATAGGAACAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCAAGTCATGGCACGCTGTTCCAGTAGCTAACAAATCGGACTGGTTTGTGAAGCAAGCTGACGTTGTTAAGAAAGTGGTAGCAACAATGCCGGTACATTTGCAAGTCAATTACAAAGAGACAATGAGAAGTGACGAGACCTTGACGATATGCAGTTCGGAGATATTCTACATACCCCGTCGTTTTGTATCCGACTTTGTCGACCTCATTAATCTAGTAGGGAATCTAGACGTGCATCACAAGGTTGCAATGCCAATGTTTTTTACGGCTATGGATTCTCCACAGAATTTCGATTCAGTATTGAATTCGATGATTTACAAGAAGAAGTCTCCTGGCAATTTAACGACATTCTATTCAGCTGAGGCACCTGCAATTCACCCATGGAAAGTGTCAAGTGAGCAAGAGTTCATAAAACTGATCAGAGTTATGGCTGCAGGTGACCCCCTGTTAATGGAGTTGGTATAGTGTAATGATAGATACTTGAAGAGTCTCACAGTGAAAATGTAAAACATGTAAAGTTTATGTGCAGCTGAATTCTACTATTCTTTTGTACCTTTCATTAGTAGGGGGGGAATGGGGTGAAAGAAGAGGTTTTGTGCTCTTGTAGATTTTTGTTGTAATACTGTTTTAACTCTTAAAAATTTTGTGGCAAAGAGAATTGAAGGAGAAAACAGTGCAGGCTTTCTTCTGATTTTCATTTTGCTTTTGAATACGTTTTGTTTCTAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E709844" ref_strand="+" ref_description="SGN-E709844 [FA53BF12]">
      <seq>ccggtagaataagaaactccgactactaactactactagtctactactactagtagcaggggagtagatgaggctatccccctgcctctcccacatgaagtgcggtaacactcggctacctactaaccgtctactctaatcattgacatccagtacatatgtagaataatatatgtaaggttctttatttctttattcggcttggagaggagataatgtatatgaaacccgagaccatcgtcatgaggaaagagttccatcctatgatatgtttagacatagcttgagttttttacttgtggttaaagcgcacttgcttgatcatccaactgcctccagggagagagggaaaagggattttttttgtaagttcttaatttattgttgcaaatgatcaactctcaaacctgtcctacccaaatacacaagcaataggcgtctcatttctttcttttgcgtataggtatccaagtcatggcacgctgttccagtagctaacaaatcggactggtttgtgaagcaagctgacgttgttaagaaagtggtagcaacaatgccggtacatttgcaagtcaattacaaagagacaatgagaagtgacgagaccttgacgatatgcagttcggagatattctacataccccgtcgttttgtatccgactttgtcgacctcattaatctagtagggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="71043" stop="72329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71340" g_stop="72029" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E709844" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71340" e_stop="72029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAGAATAAGAAACTCCGACTACTAACTACTACTAGTCTACTACTACTAGTAGCAGGGGAGTAGATGAGGCTATCCCCCTGCCTCTCCCACATGAAGTGCGGTAACACTCGGCTACCTACTAACCGTCTACTCTAATCATTGACATCCAGTACATATGTAGAATAATATATGTAAGGTTCTTTATTTCTTTATTCGGCTTGGAGAGGAGATAATGTATATGAAACCCGAGACCATCGTCATGAGGAAAGAGTTCCATCCTATGATATGTTTAGACATAGCTTGAGTTTTTTACTTGTGGTTAAAGCGCACTTGCTTGATCATCCAACTGCCTCCAGGGAGAGAGGGAAAAGGGATTTTTTTTGTAAGTTCTTAATTTATTGTTGCAAATGATCAACTCTCAAACCTGTCCTACCCAAATACACAAGCAATAGGCGTCTCATTTCTTTCTTTTGCGTATAGGTATCCAAGTCATGGCACGCTGTTCCAGTAGCTAACAAATCGGACTGGTTTGTGAAGCAAGCTGACGTTGTTAAGAAAGTGGTAGCAACAATGCCGGTACATTTGCAAGTCAATTACAAAGAGACAATGAGAAGTGACGAGACCTTGACGATATGCAGTTCGGAGATATTCTACATACCCCGTCGTTTTGTATCCGACTTTGTCGACCTCATTAATCTAGTAGGGAA</genome_strand>
        <mrna_strand>CCGGTAGAATAAGAAACTCCGACTACTAACTACTACTAGTCTACTACTACTAGTAGCAGGGGAGTAGATGAGGCTATCCCCCTGCCTCTCCCACATGAAGTGCGGTAACACTCGGCTACCTACTAACCGTCTACTCTAATCATTGACATCCAGTACATATGTAGAATAATATATGTAAGGTTCTTTATTTCTTTATTCGGCTTGGAGAGGAGATAATGTATATGAAACCCGAGACCATCGTCATGAGGAAAGAGTTCCATCCTATGATATGTTTAGACATAGCTTGAGTTTTTTACTTGTGGTTAAAGCGCACTTGCTTGATCATCCAACTGCCTCCAGGGAGAGAGGGAAAAGGGATTTTTTTTGTAAGTTCTTAATTTATTGTTGCAAATGATCAACTCTCAAACCTGTCCTACCCAAATACACAAGCAATAGGCGTCTCATTTCTTTCTTTTGCGTATAGGTATCCAAGTCATGGCACGCTGTTCCAGTAGCTAACAAATCGGACTGGTTTGTGAAGCAAGCTGACGTTGTTAAGAAAGTGGTAGCAACAATGCCGGTACATTTGCAAGTCAATTACAAAGAGACAATGAGAAGTGACGAGACCTTGACGATATGCAGTTCGGAGATATTCTACATACCCCGTCGTTTTGTATCCGACTTTGTCGACCTCATTAATCTAGTAGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E232356" ref_strand="-" ref_description="SGN-E232356 [cLEL-5-D15]">
      <seq>acaaatcccaattctttcaggaagttgcttcaaacattcttaaagggcaacgggcgtggaaactgggatacttcttaagggaacattaagaaactcaagcaattgtactcagaagtcgaaaacacgattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattaatgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctaatgtgaattcctttgatagtccccagtggaatttttgttcatcttttggggatgtctttctacttctatgagaaaaattctgcttccatatgttcccctaaaaaaaaaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73600" stop="15757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73300" g_stop="72974" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72973" i_stop="72528" i_length="446">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.872" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72527" g_stop="72496" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="359" r_length="32" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E232356" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232356" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73300" e_stop="72974"/>
          <exon e_start="72527" e_stop="72496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAATTTGATCTTGAAAGTTGCAACTGCCTTCATGCTCTAATTTTTTCTTTGTTTTTCCCACCTGTGATGAGCAGTACCCGCTCTCTAAGGCCTAACTAATTTGGAATCGCGTCAGAAAGTCCCACTTTGAAACGAATGAGTATTTCAGCAAAACAAACGCTGAAATGCCCATATACAAGATGTATACCAAAAAGATGAAAACCTACAAAAGGAAACTCAAGTATCTTCAATAATGCACTTCGAAGATCTTCAAATCGAGTATGTATTGAAGGGACGTCAAGGGTGTGCTCTCTCTAACAACTTTAAATTTTTCGATCAGATGTCCCATGACTGCTGTTTTGGGACATTTGTAGACATCTCTTGGACACATCAAGATGAGAAGTGTTCAACCAATCTTGATTTATCATATGTAAGAAACTGAAGATGTATAAAAGATTTCTCTGTAGAAACAAAACGTATTCAAAAGCAAAATGAAAAT</genome_strand>
        <mrna_strand>ACAAATCCCAATTCTTTCAGGAAGTTGCTTCAAACATTCTTAAAGGGCAACGGGCGTGGAAACTGGGATACTTCTTAAGGGAACATTAAGAAACTCAAGCAATTGTACTCAGAAGTCGAAAACACGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTAATGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTAATGTGAATTCCTTTGATAGTCCCCAGTGGAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATTCTGCTTCCATATGTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTAAAAAAAAAACAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E734187" ref_strand="+" ref_description="SGN-E734187 [LB12AA10]">
      <seq>agttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttgatagtccccagtgtaatttttgttcatcttttggggatgtctttctacttctatgagaaaaatactgcttccatatgttcaaatttgatcttgaaagttgcaactgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73788" stop="72648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73488" g_stop="72949" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="542" polyA_stop="554"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E734187" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73488" e_stop="72949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAATTTGATCTTGAAAGTTGCAACT</genome_strand>
        <mrna_strand>AGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAATTTGATCTTGAAAGTTGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E736754" ref_strand="+" ref_description="SGN-E736754 [LC07AC05]">
      <seq>cctagctgttgagaactcatcatggaacgacgagaagcaacttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccatccttcctgaggttctgaacgaggttggttggatctgaatcgaagtagtgactacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttgatagtccccagtgtaatttttgttcatcttttgggggatgtcttctacttctatgagaaaaatactgcttccatatgntcaaatttgatctttgaagttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74236" stop="72651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73936" g_stop="73633" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="0.82"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73531" g_stop="72955" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="885" r_length="577" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="886" polyA_stop="901"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E736754" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73936" e_stop="73633"/>
          <exon e_start="73531" e_stop="72955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCT--CGTTCAGAAC--CTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGG-GATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAATTTGATCTTGAAAGTT</genome_strand>
        <mrna_strand>CCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCATCCTTCCTGAGGTTCTGAACGAGGTTGGTTGGATCTGAATCGAAGTAGTGACTACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGGATGTC-TTCTACTTCTATGAGAAAAATACTGCTTCCATATGNTCAAATTTGATCTTTGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E735315" ref_strand="+" ref_description="SGN-E735315 [LC01AB01]">
      <seq>tggcaagaaacctcttgtatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttgatagtccccagtgtaatttttgttcatcttttggggatgtctttctacttctatgagaaaaatactgcttccatatgttcaaatttgatcttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73984" stop="72658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73684" g_stop="73633" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73531" g_stop="72958" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="626" r_length="574" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="638"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E735315" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73684" e_stop="73633"/>
          <exon e_start="73531" e_stop="72958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAATTTGATCTTGAAA</genome_strand>
        <mrna_strand>TGGCAAGAAACCTCTTGTATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAATTTGATCTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E345776" ref_strand="+" ref_description="SGN-E345776 [cTOF-18-O23]">
      <seq>ctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttgatagtccccagtgtaatttttgttcatcttttggggatgtctttctacttctatgagaaaaatactgcttccatatgnttcaaatttgatcttgaaaaaaaaaaannnaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73804" stop="72658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73504" g_stop="72958" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="560" polyA_stop="570"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E345776" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73504" e_stop="72958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATG-TTCAAATTTGATCTTGAAA</genome_strand>
        <mrna_strand>CTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGNTTCAAATTTGATCTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E300581" ref_strand="+" ref_description="SGN-E300581 [cLET-45-G20]">
      <seq>ccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgcttgtttctgctacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttgatagtccccagtgtaatttttgttcatcttttggggatgtctttctacttctatgagaaaaatactgcttccatatgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73776" stop="72671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73476" g_stop="72964" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E300581" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73476" e_stop="72964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAATTTGATC</genome_strand>
        <mrna_strand>CCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGCTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E374344" ref_strand="+" ref_description="SGN-E374344 [TUS-33-D6]">
      <seq>ccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttgatagtccccagtgtaatttttgttcatcttttggggatgtctttctacttctatgagaaaaatactgcttccatatgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73776" stop="72671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73476" g_stop="72964" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E374344" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73476" e_stop="72964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAATTTGATC</genome_strand>
        <mrna_strand>CCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E374343" ref_strand="+" ref_description="SGN-E374343 [TUS-33-D6]">
      <seq>tttttttttgaacatatggaagcagtatttttctcatagaagtagaaagacatccccaaaagatgaacaaaaattacactggggactatcaaaggaattcacatcagaaattgttaggaagcagaaaggatcttattatcctgtagcagaaacaaacaataatcagagatcatatatttagctatacatttatcggtctattccttcaatcttgtcttcgacttctgagtacaattgcttgagtttctcaatgttctcttcagaagtatcccagtatccacgcccgttggcctccaagaatgtctgaagcaacttcctgaaagaatttggatttgtgttcataagcctgttcaacatctcttcatctttgatgaatgttgtgttggcttcttcatacacccaattgtcaacttggcctgaagttgcactccaccccactgtgttggtcaatcgtttctcaatctcacgaacaccctcgtagccagtggacagcatgccttcataccacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="72671" stop="73777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72965" g_stop="73477" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E374343" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72965" e_stop="73477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATTTGAACATATGGAAGCAGTATTTTTCTCATAGAAGTAGAAAGACATCCCCAAAAGATGAACAAAAATTACACTGGGGACTATCAAAGGAATTCACATCAGAAATTGTTAGGAAGCAGAAAGGATCTTATTATCCTGTAGCAGAAACAAACAATAATCAGAGATCATATATTTAGCTATACATTTATCGGTCTATTCCTTCAATCTTGTCTTCGACTTCTGAGTACAATTGCTTGAGTTTCTCAATGTTCTCTTCAGAAGTATCCCAGTATCCACGCCCGTTGGCCTCCAAGAATGTCTGAAGCAACTTCCTGAAAGAATTTGGATTTGTGTTCATAAGCCTGTTCAACATCTCTTCATCTTTGATGAATGTTGTGTTGGCTTCTTCATACACCCAATTGTCAACTTGGCCTGAAGTTGCACTCCACCCCACTGTGTTGGTCAATCGTTTCTCAATCTCACGAACACCCTCGTAGCCAGTGGACAGCATGCCTTCATACCACTTGGG</genome_strand>
        <mrna_strand>TTTTTTTTTGAACATATGGAAGCAGTATTTTTCTCATAGAAGTAGAAAGACATCCCCAAAAGATGAACAAAAATTACACTGGGGACTATCAAAGGAATTCACATCAGAAATTGTTAGGAAGCAGAAAGGATCTTATTATCCTGTAGCAGAAACAAACAATAATCAGAGATCATATATTTAGCTATACATTTATCGGTCTATTCCTTCAATCTTGTCTTCGACTTCTGAGTACAATTGCTTGAGTTTCTCAATGTTCTCTTCAGAAGTATCCCAGTATCCACGCCCGTTGGCCTCCAAGAATGTCTGAAGCAACTTCCTGAAAGAATTTGGATTTGTGTTCATAAGCCTGTTCAACATCTCTTCATCTTTGATGAATGTTGTGTTGGCTTCTTCATACACCCAATTGTCAACTTGGCCTGAAGTTGCACTCCACCCCACTGTGTTGGTCAATCGTTTCTCAATCTCACGAACACCCTCGTAGCCAGTGGACAGCATGCCTTCATACCACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E222290" ref_strand="+" ref_description="SGN-E222290 [cLEL-16-I20]">
      <seq>tctttttttgaacatatggaagcagtggttttctcatagaagtagaaagacatccccaaaagatgaacaataattacactggggactatcaaaggaattcacatcataaattgttaggaagcataaaggatcttattatcctgtagcagaaacaaacaataatcagagatcatatatttagctatacatttatcggtctattccttcaatcttgtcttcgacttctgagtacaattgcttgagtttctcaatgttctcttcagaagtatcccagtatccacgcccgttggcctccaagaatgtctgaagcaacttcctgaaagaatttggatttgtgttcataagcctgttcaacatcttttcatctttgatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="72671" stop="73641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72966" g_stop="73341" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E222290" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72966" e_stop="73341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAT-TTGAACATATGGAAGCAGTATTTTTCTCATAGAAGTAGAAAGACATCCCCAAAAGATGAACAAAAATTACACTGGGGACTATCAAAGGAATTCACATCAGAAATTGTTAGGAAGCAGAAAGGATCTTATTATCCTGTAGCAGAAACAAACAATAATCAGAGATCATATATTTAGCTATACATTTATCGGTCTATTCCTTCAATCTTGTCTTCGACTTCTGAGTACAATTGCTTGAGTTTCTCAATGTTCTCTTCAGAAGTATCCCAGTATCCACGCCCGTTGGCCTCCAAGAATGTCTGAAGCAACTTCCTGAAAGAATTTGGATTTGTGTTCATAAGCCTGTTCAACATCTCTTCATCTTTGATGAATG</genome_strand>
        <mrna_strand>TCTTTTTTTGAACATATGGAAGCAGTGGTTTTCTCATAGAAGTAGAAAGACATCCCCAAAAGATGAACAATAATTACACTGGGGACTATCAAAGGAATTCACATCATAAATTGTTAGGAAGCATAAAGGATCTTATTATCCTGTAGCAGAAACAAACAATAATCAGAGATCATATATTTAGCTATACATTTATCGGTCTATTCCTTCAATCTTGTCTTCGACTTCTGAGTACAATTGCTTGAGTTTCTCAATGTTCTCTTCAGAAGTATCCCAGTATCCACGCCCGTTGGCCTCCAAGAATGTCTGAAGCAACTTCCTGAAAGAATTTGGATTTGTGTTCATAAGCCTGTTCAACATCTTTTCATCTTTGATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E730967" ref_strand="+" ref_description="SGN-E730967 [LA25DA09]">
      <seq>tgaagaagccaaccctcattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttgatagtccccagtgtaatttttgttcatcttttggggatgtctttctacttctatgagaaaaatactgcttccatatgttcaaatttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73658" stop="72666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73358" g_stop="72967" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="404"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E730967" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73358" e_stop="72967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAATTTG</genome_strand>
        <mrna_strand>TGAAGAAGCCAAC-CCTCATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E733616" ref_strand="+" ref_description="SGN-E733616 [LB10CA02]">
      <seq>gaaagatgttaactcatgaagttgatagaggtcgtttattttatgccctgcctctatctgtgatgattcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttgatagtccccagtgtaatttttgttcatcttttggggatgtctttctacttctatgagaaaaatactgcttccataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73904" stop="72679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73604" g_stop="72969" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E733616" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73604" e_stop="72969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAATT</genome_strand>
        <mrna_strand>GAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCC--CTGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E228941" ref_strand="+" ref_description="SGN-E228941 [cLEL-29-D19]">
      <seq>tttttgatcatatggaatcagtatttttctcatagaagtagaaagacatccccaaaagatgaacaaaaattacactggggactatcaaaggaattcacatcagaaattgttaggaagcagaaaggatcttattatcctgtagcagaaacaaacaataatcagagatcatatatttagctatacatttatcggtctattccttcaatcttgtcttcgacttctgagtacaattgcttgagtttctcaatgttctcttcagaagtatcccagtatccacgcccgttggcctccaagaatgtctgaagcaacttcctgaaagaatttggattttgtgttcataangcctgttcaacatctcttcatctttgatgaatgttgtgttggcttcttcatacacccaattgtcaacttggcctgaagttgcactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="72671" stop="73695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72969" g_stop="73395" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E228941" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72969" e_stop="73395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGAACATATGGAAGCAGTATTTTTCTCATAGAAGTAGAAAGACATCCCCAAAAGATGAACAAAAATTACACTGGGGACTATCAAAGGAATTCACATCAGAAATTGTTAGGAAGCAGAAAGGATCTTATTATCCTGTAGCAGAAACAAACAATAATCAGAGATCATATATTTAGCTATACATTTATCGGTCTATTCCTTCAATCTTGTCTTCGACTTCTGAGTACAATTGCTTGAGTTTCTCAATGTTCTCTTCAGAAGTATCCCAGTATCCACGCCCGTTGGCCTCCAAGAATGTCTGAAGCAACTTCCTGAAAGAATTTGGA-TTTGTGTTCATAA-GCCTGTTCAACATCTCTTCATCTTTGATGAATGTTGTGTTGGCTTCTTCATACACCCAATTGTCAACTTGGCCTGAAGTTGCACTCC</genome_strand>
        <mrna_strand>TTTTTGATCATATGGAATCAGTATTTTTCTCATAGAAGTAGAAAGACATCCCCAAAAGATGAACAAAAATTACACTGGGGACTATCAAAGGAATTCACATCAGAAATTGTTAGGAAGCAGAAAGGATCTTATTATCCTGTAGCAGAAACAAACAATAATCAGAGATCATATATTTAGCTATACATTTATCGGTCTATTCCTTCAATCTTGTCTTCGACTTCTGAGTACAATTGCTTGAGTTTCTCAATGTTCTCTTCAGAAGTATCCCAGTATCCACGCCCGTTGGCCTCCAAGAATGTCTGAAGCAACTTCCTGAAAGAATTTGGATTTTGTGTTCATAANGCCTGTTCAACATCTCTTCATCTTTGATGAATGTTGTGTTGGCTTCTTCATACACCCAATTGTCAACTTGGCCTGAAGTTGCACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E228845" ref_strand="+" ref_description="SGN-E228845 [cLEL-29-D19]">
      <seq>tttttgaacatatggaagcgggatttttctcatagaagtagaaagacatccccaaaagatgaacaaaaattacactggggactatcaaaggaattcacatcagaaattgttaggaagcagaaaggatcttattatcctgtagcagaaacaaacaataatcagagatcatatatttagctatacatttatcggtctattccttcaatcttgtcttcgacttctgagtacaattgcttgagtttctcaatgttctcttcagaagtatcccagtatccacgcccgttggcctccaagaatgtctgaagcaacttcctgaaagaatttggatttgtgttcataagcctggtcaacatctcttcatctttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="72671" stop="73637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72969" g_stop="73337" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E228845" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72969" e_stop="73337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGAACATATGGAAGCAGTATTTTTCTCATAGAAGTAGAAAGACATCCCCAAAAGATGAACAAAAATTACACTGGGGACTATCAAAGGAATTCACATCAGAAATTGTTAGGAAGCAGAAAGGATCTTATTATCCTGTAGCAGAAACAAACAATAATCAGAGATCATATATTTAGCTATACATTTATCGGTCTATTCCTTCAATCTTGTCTTCGACTTCTGAGTACAATTGCTTGAGTTTCTCAATGTTCTCTTCAGAAGTATCCCAGTATCCACGCCCGTTGGCCTCCAAGAATGTCTGAAGCAACTTCCTGAAAGAATTTGGATTTGTGTTCATAAGCCTGTTCAACATCTCTTCATCTTTGATG</genome_strand>
        <mrna_strand>TTTTTGAACATATGGAAGCGGGATTTTTCTCATAGAAGTAGAAAGACATCCCCAAAAGATGAACAAAAATTACACTGGGGACTATCAAAGGAATTCACATCAGAAATTGTTAGGAAGCAGAAAGGATCTTATTATCCTGTAGCAGAAACAAACAATAATCAGAGATCATATATTTAGCTATACATTTATCGGTCTATTCCTTCAATCTTGTCTTCGACTTCTGAGTACAATTGCTTGAGTTTCTCAATGTTCTCTTCAGAAGTATCCCAGTATCCACGCCCGTTGGCCTCCAAGAATGTCTGAAGCAACTTCCTGAAAGAATTTGGATTTGTGTTCATAAGCCTGGTCAACATCTCTTCATCTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E222391" ref_strand="+" ref_description="SGN-E222391 [cLEL-16-K24]">
      <seq>tttttgaacatatggaagtagtatttttctcatagaagtagaaagacatccccaaaagatgaacaaaaattacactggggactatcaaaggaattcacatcagaaattgttaggaagcagaaaggatcttattatcctgtagcagaaacaaacaataatcagagatcatatatttagctatacatttatcggtctattccttcaatcttgtcttcgacttctgagtacaattgcttgagtttctcaatgttctcttcagaagtatcccagtatccacgcccgttggcctccaagaatgtctgaagcaacttcctgaaagaatttggatttgtgttcataagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="72671" stop="73612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72969" g_stop="73312" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E222391" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72969" e_stop="73312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGAACATATGGAAGCAGTATTTTTCTCATAGAAGTAGAAAGACATCCCCAAAAGATGAACAAAAATTACACTGGGGACTATCAAAGGAATTCACATCAGAAATTGTTAGGAAGCAGAAAGGATCTTATTATCCTGTAGCAGAAACAAACAATAATCAGAGATCATATATTTAGCTATACATTTATCGGTCTATTCCTTCAATCTTGTCTTCGACTTCTGAGTACAATTGCTTGAGTTTCTCAATGTTCTCTTCAGAAGTATCCCAGTATCCACGCCCGTTGGCCTCCAAGAATGTCTGAAGCAACTTCCTGAAAGAATTTGGATTTGTGTTCATAAGCCT</genome_strand>
        <mrna_strand>TTTTTGAACATATGGAAGTAGTATTTTTCTCATAGAAGTAGAAAGACATCCCCAAAAGATGAACAAAAATTACACTGGGGACTATCAAAGGAATTCACATCAGAAATTGTTAGGAAGCAGAAAGGATCTTATTATCCTGTAGCAGAAACAAACAATAATCAGAGATCATATATTTAGCTATACATTTATCGGTCTATTCCTTCAATCTTGTCTTCGACTTCTGAGTACAATTGCTTGAGTTTCTCAATGTTCTCTTCAGAAGTATCCCAGTATCCACGCCCGTTGGCCTCCAAGAATGTCTGAAGCAACTTCCTGAAAGAATTTGGATTTGTGTTCATAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E539545" ref_strand="-" ref_description="SGN-E539545 [TUS-59-F20]">
      <seq>cccccgggctgcaggttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttgatagtccnccagtgtaatttttgttcatcttttggggatgtctttctacttctatgagaaaaatactgcttccatatgttcaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74206" stop="72671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73910" g_stop="73633" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73531" g_stop="72972" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="839" r_length="561" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="840" polyA_stop="860"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E539545" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539545" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73910" e_stop="73633"/>
          <exon e_start="73531" e_stop="72972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCC-CCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAA</genome_strand>
        <mrna_strand>CCCCCGGGCTGCAGGTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCNCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E733578" ref_strand="+" ref_description="SGN-E733578 [LB10BE12]">
      <seq>gttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggagactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttgatagtccccagtgtaatttttgttcatcttttggggatgtctttctacttctatgagaaaaatactgcttccatatgttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73823" stop="72671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73523" g_stop="72972" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="568"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E733578" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73523" e_stop="72972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAA</genome_strand>
        <mrna_strand>GTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGAGACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E232432" ref_strand="-" ref_description="SGN-E232432 [cLEL-5-D15]">
      <seq>gttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttcttaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagtccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgccacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttgatagtccccagtggaatttttgttcatcttttggggatgtctttctacttctatgagaaaaatactgcttccatatgttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73619" stop="72671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73319" g_stop="72972" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="349" polyA_stop="378"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E232432" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232432" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73319" e_stop="72972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAA</genome_strand>
        <mrna_strand>GTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTTAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGTCCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCCACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGGAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E234226" ref_strand="-" ref_description="SGN-E234226 [cLEL-8-M15]">
      <seq>ttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggaatctgggatacttctaaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctagcaatttctgattgtgaattcctttaatagtccccagtgtaatttttgttcatcttttggggatgtctttctacttctatgaaaaaaatactgcttccataaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73618" stop="72679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73318" g_stop="72980" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="341" polyA_stop="366"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E234226" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234226" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73318" e_stop="72980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGA-TGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCAT</genome_strand>
        <mrna_strand>TTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGAATCTGGGATACTTCTAAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAGCAATTTCTGATTGTGAATTCCTTTAATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAAAAAAATACTGCTTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E715407" ref_strand="+" ref_description="SGN-E715407 [FB14AG07]">
      <seq>ggaacgacgagaagcaacttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttgatagtccccagtgtaatttttgttcatcttttggggatgtctttctacttctatgagaaaaatactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74213" stop="72685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73913" g_stop="73633" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73531" g_stop="72985" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="828" r_length="547" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E715407" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73913" e_stop="73633"/>
          <exon e_start="73531" e_stop="72985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCT</genome_strand>
        <mrna_strand>GGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E740968" ref_strand="+" ref_description="SGN-E740968 [LC23CG07]">
      <seq>acgacgagaagcaacttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttgatagtccccagtgtaatttttgttcatcttttggggatgtctttctacttctatgagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74210" stop="72690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73910" g_stop="73633" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73531" g_stop="72985" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="825" r_length="547" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E740968" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73910" e_stop="73633"/>
          <exon e_start="73531" e_stop="72985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCT</genome_strand>
        <mrna_strand>ACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E539548" ref_strand="+" ref_description="SGN-E539548 [TUS-59-F20]">
      <seq>ttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaaaacattctgatgtgaattcctttgatagtccccagtgtaatttttggtcatcttttggggatgtctttctacttctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74195" stop="72699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73895" g_stop="73633" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73531" g_stop="72999" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="796" r_length="533" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E539548" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73895" e_stop="73633"/>
          <exon e_start="73531" e_stop="72999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATG</genome_strand>
        <mrna_strand>TTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAAAACATTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGGTCATCTTTTGGGGATGTCTTTCTACTTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E225965" ref_strand="-" ref_description="SGN-E225965 [cLEL-31-K22]">
      <seq>ggtggagtgcaacttcagggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttgatagtcccccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73698" stop="72745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73398" g_stop="73044" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="357" polyA_stop="378"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E225965" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225965" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73398" e_stop="73044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGAGTGCAACTTCA-GGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCA</genome_strand>
        <mrna_strand>GGTGGAGTGCAACTTCAGGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E737637" ref_strand="+" ref_description="SGN-E737637 [LC10CF07]">
      <seq>cctagctgttgagaactcatcatggaacgacgagaagcaacttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccatccttcctgaggttctgaacgaggttggttggatctgaatcgaagtagtgactacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74236" stop="72754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73936" g_stop="73633" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="0.82"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73531" g_stop="73054" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="786" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E737637" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73936" e_stop="73633"/>
          <exon e_start="73531" e_stop="73054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCT--CGTTCAGAAC--CTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTG</genome_strand>
        <mrna_strand>CCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCATCCTTCCTGAGGTTCTGAACGAGGTTGGTTGGATCTGAATCGAAGTAGTGACTACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E226253" ref_strand="+" ref_description="SGN-E226253 [cLEL-31-K22]">
      <seq>cacatcacaaattgttaggaagcagaaaggatcttattatcctgtagcagaaacaaacaataatcagagatcatatatttagctatacatttatcgggctattccttcaatcttgtcttcgacttctgagtacaattgcttgagtttctcaatgttctcttcagaagtatcccagtatccacgcccgttggcctccaagaatgtctgaagcaacttcctgaaagaatttggatttgtgttcataagcctgttcaacatctcttcatctttgatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="72764" stop="73641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73064" g_stop="73341" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E226253" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73064" e_stop="73341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATCAGAAATTGTTAGGAAGCAGAAAGGATCTTATTATCCTGTAGCAGAAACAAACAATAATCAGAGATCATATATTTAGCTATACATTTATCGGTCTATTCCTTCAATCTTGTCTTCGACTTCTGAGTACAATTGCTTGAGTTTCTCAATGTTCTCTTCAGAAGTATCCCAGTATCCACGCCCGTTGGCCTCCAAGAATGTCTGAAGCAACTTCCTGAAAGAATTTGGATTTGTGTTCATAAGCCTGTTCAACATCTCTTCATCTTTGATGAATG</genome_strand>
        <mrna_strand>CACATCACAAATTGTTAGGAAGCAGAAAGGATCTTATTATCCTGTAGCAGAAACAAACAATAATCAGAGATCATATATTTAGCTATACATTTATCGGGCTATTCCTTCAATCTTGTCTTCGACTTCTGAGTACAATTGCTTGAGTTTCTCAATGTTCTCTTCAGAAGTATCCCAGTATCCACGCCCGTTGGCCTCCAAGAATGTCTGAAGCAACTTCCTGAAAGAATTTGGATTTGTGTTCATAAGCCTGTTCAACATCTCTTCATCTTTGATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E699585" ref_strand="+" ref_description="SGN-E699585 [FA10CD08]">
      <seq>cagtaagggttgctgagcttgatgaaccggaagaccaaaactctgtcaggaaacatgcactagaacaggcaaaaacactcggaattgatgttcgtgaagcagctactagggtcttctcaaacgcttcgggttcttactcttccaacatcaacctagctgttgagaactcatcatggaacgacgagaagcaacttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaaaacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74382" stop="72771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74089" g_stop="73633" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73531" g_stop="73071" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="916" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E699585" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>918</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74089" e_stop="73633"/>
          <exon e_start="73531" e_stop="73071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTC</genome_strand>
        <mrna_strand>CAGTAAG--GGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTCTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAAAACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E739183" ref_strand="+" ref_description="SGN-E739183 [LC16BG07]">
      <seq>tactcttccaacatcaacctagctgttgagaactcatcatggaacgacgagaagcaacttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74253" stop="72775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73953" g_stop="73633" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73531" g_stop="73076" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="777" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E739183" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73953" e_stop="73633"/>
          <exon e_start="73531" e_stop="73076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACA</genome_strand>
        <mrna_strand>TACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E733805" ref_strand="+" ref_description="SGN-E733805 [LB11AA02]">
      <seq>gcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74135" stop="72775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73835" g_stop="73633" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73531" g_stop="73076" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="659" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E733805" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73835" e_stop="73633"/>
          <exon e_start="73531" e_stop="73076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACA</genome_strand>
        <mrna_strand>GCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E739055" ref_strand="+" ref_description="SGN-E739055 [LC15DH08]">
      <seq>ctatatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73804" stop="72775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73504" g_stop="73076" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="430" polyA_stop="451"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E739055" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73504" e_stop="73076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACA</genome_strand>
        <mrna_strand>CTATATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E239125" ref_strand="-" ref_description="SGN-E239125 [cLEL-9-C18]">
      <seq>tgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73785" stop="72775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73485" g_stop="73076" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="426"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E239125" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239125" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73485" e_stop="73076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACA</genome_strand>
        <mrna_strand>TGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E239212" ref_strand="-" ref_description="SGN-E239212 [cLEL-9-C18]">
      <seq>ttgaaccccaagtggtatgaaggcatactgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaactcagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagtagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73783" stop="72775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73483" g_stop="73076" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="409" polyA_stop="424"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E239212" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239212" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73483" e_stop="73076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACA</genome_strand>
        <mrna_strand>TTGAACCCCAAGTGGTATGAAGGCATACTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACTCAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGTAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E239311" ref_strand="-" ref_description="SGN-E239311 [cLEL-9-D18]">
      <seq>ggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73762" stop="72775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73462" g_stop="73076" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="403"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E239311" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239311" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73462" e_stop="73076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACA</genome_strand>
        <mrna_strand>GGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E738813" ref_strand="+" ref_description="SGN-E738813 [LC15AC02]">
      <seq>gaggaatcaagatggttgctgagcttgatgaaccggaagaccaaaactttgtcaggaaacatgcactagaacaggcaaaaacactcggaattgatgttcgtgaagcagctactagggtcttctcaaacgcttcgggttcttactcttccaacatcaacctagctgttgagaactcatcatggaacgacgagaagcaacttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74393" stop="72814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74093" g_stop="73633" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73531" g_stop="73114" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="879" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E738813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74093" e_stop="73633"/>
          <exon e_start="73531" e_stop="73114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTT</genome_strand>
        <mrna_strand>GAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E346960" ref_strand="+" ref_description="SGN-E346960 [cTOF-25-E9]">
      <seq>agcaatatcagccttcgttgaacgctcaaccaacaacaagggtcaggttgttgacaattctgacaagctgacctcactccttggtttttctattaatgaaccatggatccagtatttatcaaacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgngatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagaccagattgaaggaatagaccgataaatgtatagctaaatatatgatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="75150" stop="72828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74850" g_stop="74727" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74726" i_stop="73654" i_length="1073">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73653" g_stop="73633" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="145" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73531" g_stop="73128" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="549" r_length="404" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E346960" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74850" e_stop="74727"/>
          <exon e_start="73653" e_stop="73633"/>
          <exon e_start="73531" e_stop="73128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAGGTATTGGTCTATCCTCCTTTTCCACTGATTCTGCACTGGATTGGTACATTAGTGCAATGTCAGATCATTACTTATCATTTGTTTTGTTTTGTATACAGATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTG</genome_strand>
        <mrna_strand>AGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGNGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACCAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E740980" ref_strand="+" ref_description="SGN-E740980 [LC23CH11]">
      <seq>ctttggcacaggttatgtggatgattggtgttaggccagttgcagacacacttggacgcgttaaccgagtggaaccagttagtcttgaagagcttggaaggcctagagttgatgttgttgtcaactgctccggggtgttcagggatctcttcatcaatcagatgaatctccttgaccgaggaatcaagatggttgctgagcttgatgaaccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcangaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74668" stop="72835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74368" g_stop="74208" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74109" g_stop="74062" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="209" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74061" i_stop="73877" i_length="185">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73876" g_stop="73633" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="453" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73531" g_stop="73135" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="850" r_length="397" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E740980" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74368" e_stop="74208"/>
          <exon e_start="74109" e_stop="74062"/>
          <exon e_start="73876" e_stop="73633"/>
          <exon e_start="73531" e_stop="73135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAGGTATTGGTCTATCCTCCTTTTCCACTGATTCTGCACTGGATTGGTACATTAGTGCAATGTCAGATCATTACTTATCATTTGTTTTGTTTTGTATACAGATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATG</genome_strand>
        <mrna_strand>CTTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG..................................................................................................ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAA.........................................................................................................................................................................................CCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCANGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E709850" ref_strand="+" ref_description="SGN-E709850 [FA53BG08]">
      <seq>cgcttgatggttgctgagcttgatgaaccggaagaccaaaactttgtcaggaaacatgcactagaacaggcaaaaacactcggaattgatgttcgtgaagcagctactagggtcttctcaaacgcttcgggttcttactcttccaacatcaacctagctgttgagaactcatcatggaacgacgagaagcaacttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74383" stop="72904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74088" g_stop="73633" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73531" g_stop="73204" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="784" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E709850" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74088" e_stop="73633"/>
          <exon e_start="73531" e_stop="73204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCA</genome_strand>
        <mrna_strand>CGCTTGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E554100" ref_strand="+" ref_description="SGN-E554100 [cTSC-3-D24]">
      <seq>cagttgcagacacacttggacgcgttaaccgagtggaaccagttagtcttgaagagcttggaaggcctagagttgatgttgttgtcaactgctccggggtgttcagggatctcttcatcaatcagatgaatctccttgaccgaggaatcaagatggttgctgagcttgatgaaccggaagaccaaaactttgtcaggaaacatgcactagaacaggcaaaaacactcggaattgatgttcgtgaagcagctactagggtcttctcaaacgcttcgggttcttactcttccaacatcaacctagctgttgagaactcatcatggaacgacgagaagcaacttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaattcaaattctttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74632" stop="72982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74332" g_stop="74208" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74109" g_stop="73633" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="602" r_length="477" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73531" g_stop="73282" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="852" r_length="250" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E554100" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74332" e_stop="74208"/>
          <exon e_start="74109" e_stop="73633"/>
          <exon e_start="73531" e_stop="73282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAGGTATTGGTCTATCCTCCTTTTCCACTGATTCTGCACTGGATTGGTACATTAGTGCAATGTCAGATCATTACTTATCATTTGTTTTGTTTTGTATACAGATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCA</genome_strand>
        <mrna_strand>CAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG..................................................................................................ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATTCAAATTCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E289430" ref_strand="+" ref_description="SGN-E289430 [cLET-3-H11]">
      <seq>aaacctagtgttacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73965" stop="73039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73677" g_stop="73633" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73531" g_stop="73339" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="237" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E289430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73677" e_stop="73633"/>
          <exon e_start="73531" e_stop="73339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACAT</genome_strand>
        <mrna_strand>AAACCTAGTG-TTACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E287589" ref_strand="+" ref_description="SGN-E287589 [cLES-9-L14]">
      <seq>ttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgcgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgtgcgcgagattgagaaacgattgaccaacacagtggggtggagtgcaacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74159" stop="73082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73859" g_stop="73633" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73531" g_stop="73382" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="377" r_length="150" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E287589" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73859" e_stop="73633"/>
          <exon e_start="73531" e_stop="73382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCA</genome_strand>
        <mrna_strand>TTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGCGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTGCGCGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E292501" ref_strand="+" ref_description="SGN-E292501 [cLET-16-F8]">
      <seq>aaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtgggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74118" stop="73095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73818" g_stop="73633" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73531" g_stop="73395" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="323" r_length="137" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E292501" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73818" e_stop="73633"/>
          <exon e_start="73531" e_stop="73395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTG</genome_strand>
        <mrna_strand>AAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E554417" ref_strand="+" ref_description="SGN-E554417 [cTSC-4-D6]">
      <seq>ggtgctttggggaacagataacatcaagacttatggagagtcgttggcacaggttatgtggatgattggtgttaggccagttgcagacacacttggacgcgttaaccgagtggaaccagttagtcttgaagagcttggaaggcctagagttgatgttgttgtcaactgctccggggtgttcagggatctcttcatcaatcagatgaatctccttgaccgaggaatcaagatggttgctgagcttgatgaaccggaagaccaaaactttgtcaggaaacatgcactagaacaggcaaaacactcggaattgatgttcgtgaagcagctactagggtcttctcaaacgcttcgggttcttactcttccaacatcaacctagctgttgagaactcatcatggaacgacgagaagcaacttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74709" stop="73105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74409" g_stop="74208" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74109" g_stop="73633" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="678" r_length="476" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73531" g_stop="73405" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="805" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E554417" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74409" e_stop="74208"/>
          <exon e_start="74109" e_stop="73633"/>
          <exon e_start="73531" e_stop="73405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAGGTATTGGTCTATCCTCCTTTTCCACTGATTCTGCACTGGATTGGTACATTAGTGCAATGTCAGATCATTACTTATCATTTGTTTTGTTTTGTATACAGATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACA</genome_strand>
        <mrna_strand>GGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG..................................................................................................ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGC-AAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E334606" ref_strand="+" ref_description="SGN-E334606 [cTOD-23-C8]">
      <seq>gccaagatagtggttgaaagattgttggagaggcaaaagattgacaacgggggcaagtacccggaaactgttgctctggtgctttggggaacagataacatcaagacttatggagagtcgttggcacaggttatgtggatgattggtgttaggccagttgcagacacacttggacgcgttaaccgagtggaaccagttagtcttgaagagcttggaaggcctagagttgatgttgttgtcaactgctccggggtgttcagggatctcttcatcaatcagatgaatctccttgaccgaggaatcaagatggttgctgagcttgatgaaccggaagaccaaaactttgtcaggaaacatgcactagaacaggcaaaaacactcggaattgatgttcgtgaagcagctactagggtcttctcaaacgcttcgggttcttactcttccaacatcaacctagctgttgagaactcatcatggaacgacgagaagcaacttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74786" stop="73216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74486" g_stop="74208" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74109" g_stop="73633" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="756" r_length="477" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73531" g_stop="73516" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="772" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E334606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74486" e_stop="74208"/>
          <exon e_start="74109" e_stop="73633"/>
          <exon e_start="73531" e_stop="73516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAGGTATTGGTCTATCCTCCTTTTCCACTGATTCTGCACTGGATTGGTACATTAGTGCAATGTCAGATCATTACTTATCATTTGTTTTGTTTTGTATACAGATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTG</genome_strand>
        <mrna_strand>GCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG..................................................................................................ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E202936" ref_strand="+" ref_description="SGN-E202936 [cLEB-1-L14]">
      <seq>gcacgagtggacgcgttaaccgagtggaaccagttagtcttgaagagcttggaaggcctagagttgatgttgttgtcaactgctccggggtgttcagggatctcttcatcaatcagatgaatctccttgaccgaggaatcaagatggttgctgagcttgatgaaccggaagaccaaaactttgtcaggaaacatgcactagaacaggcaaaaacactcggaattgatgttcgtgaagcagctactagggtcttctcaaacgcttcgggttcttactcttccaacatcaacctagctgttgagaactcatcatggaacgacgagaagcaacttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74616" stop="73346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74323" g_stop="74208" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74109" g_stop="73646" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="580" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E202936" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74323" e_stop="74208"/>
          <exon e_start="74109" e_stop="73646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAGGTATTGGTCTATCCTCCTTTTCCACTGATTCTGCACTGGATTGGTACATTAGTGCAATGTCAGATCATTACTTATCATTTGTTTTGTTTTGTATACAGATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTAC</genome_strand>
        <mrna_strand>GCACGAGTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG..................................................................................................ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E294222" ref_strand="+" ref_description="SGN-E294222 [cLET-14-G21]">
      <seq>aaccagttagtcttgaagagcttggaaggcctagagttgatgttgttgtcaactgctccggggtgttcagggatctcttcatcaatcagatgaatctccttgaccgaggaatcaagatggttgctgagcttgatgaaccggaagaccaaaactttgtcaggaaacatgcactagaacaggcaaaaacactcggaattgatgttcgtgaagcagctactagggtcttctcaaacgcttcgggttcttactcttccaacatcaacctagctgttgagaactcatcatggaacgacgagaagcaacttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74596" stop="73417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74296" g_stop="74208" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74109" g_stop="73717" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="482" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E294222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74296" e_stop="74208"/>
          <exon e_start="74109" e_stop="73717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAGGTATTGGTCTATCCTCCTTTTCCACTGATTCTGCACTGGATTGGTACATTAGTGCAATGTCAGATCATTACTTATCATTTGTTTTGTTTTGTATACAGATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGAT</genome_strand>
        <mrna_strand>AACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG..................................................................................................ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E324916" ref_strand="+" ref_description="SGN-E324916 [cTOC-11-P8]">
      <seq>taaaccgagtggaaccagttagtcttgaagagcttggaaggcctagagttgatgttgttgtcgactgctccggggtgttcagggatctcttcatcaatcacatgaatctccttgaccgaggaatcaagatggtggctgagcttgatgaaccggatgaacaaaactatgtcatgaaacaggcnctataccaggcaaaaacactcggaattgatgttcgtgaagcagctactagggtcttctcaaacgcttcgggttcttactcttccaacatcaacctagctgttgagaactcatcatggaacgacgagaagcaacttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccaaaacctcgactcatcagaaatttcactcacagacgttagtcactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74608" stop="73428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74308" g_stop="74208" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74109" g_stop="73728" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="483" r_length="382" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E324916" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74308" e_stop="74208"/>
          <exon e_start="74109" e_stop="73728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAGGTATTGGTCTATCCTCCTTTTCCACTGATTCTGCACTGGATTGGTACATTAGTGCAATGTCAGATCATTACTTATCATTTGTTTTGTTTTGTATACAGATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACT</genome_strand>
        <mrna_strand>TAAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCGACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAC..................................................................................................ATGAATCTCCTTGACCGAGGAATCAAGATGGTGGCTGAGCTTGATGAACCGGATGAACAAAACTATGTCATGAAACAGGCNCTATACCAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAAAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E291485" ref_strand="+" ref_description="SGN-E291485 [cLET-2-F14]">
      <seq>gaaccggaagaccaaaactttgtcaggaaacatgcactagaacaggcaaaaacactcggaattgatggtcgtgaagcagctactagggtcttctcaaacgcttcgggttcttactcttccaacatcaacctagctgttgagaactcatcatggaacgacgagaagcaacttcaagacatgtacttgggccggaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaagaaagattttgagatggctctaagcacagctgatgccacgttccataacctcgactcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74364" stop="73460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74064" g_stop="73760" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E291485" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74064" e_stop="73760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATC</genome_strand>
        <mrna_strand>GAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGGTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGGGCCGGAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAAGAAAGATTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCATAACCTCGACTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E281355" ref_strand="+" ref_description="SGN-E281355 [cLEL-1-J8]">
      <seq>gcacgagtggacgcgttaaccgagtggaaccagttagtcttgaagagcttggaaggcctagagttgatgttgtccccaactgctccggggtgttcagggatctcttcatcaatcagatgaatctccttgaccgaggaatcaagatggttgctgagcttgatgaaccggaagaccaaaactttgtcaggaaacatgcactagaacaggcaaaaacactcggaattgatgttcgtgaagcagctactagggtcttctcaaacgcttcgggttcttactcttccaacatcaacctagctgttgagaactcatcatggaacgacgagaagcaacttcaagacatgtacttgagccgaaagtcatttgcatttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74616" stop="73554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74323" g_stop="74208" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74109" g_stop="73854" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="372" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E281355" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74323" e_stop="74208"/>
          <exon e_start="74109" e_stop="73854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAGGTATTGGTCTATCCTCCTTTTCCACTGATTCTGCACTGGATTGGTACATTAGTGCAATGTCAGATCATTACTTATCATTTGTTTTGTTTTGTATACAGATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACT</genome_strand>
        <mrna_strand>GCACGAGTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTCCCCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG..................................................................................................ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E263287" ref_strand="+" ref_description="SGN-E263287 [cLEG-62-K13]">
      <seq>ttggtttttctattaatgaaccatggatccagtatttatcaaacacccaattctacagagctgatagggaaaagctcagagtcctgtttcagttcttgggagagtgtctgaagctaattgtggctaataacgaggtgggaagtttgaaacaggctcttgaagggaaatatgttgaaccaggtcctggaggggatccaatcagaaatccgaaagttttgcctacagggaaaaacatccatgctttggacccacaggctattcccacaacagcagcactgcagagcgccaagatagtggttgaaagattgttggagaggcaaaagattgacaacgggggcaagtacccggaaactgttgctctggtgctttggggaacagataacatcaagacttatggagagtcgttggcacaggttatgtggatgattggtgttaggccagttgcagacacacttggacgcgttaaccgagtggaaccagttagtcttgaagagcttggaaggcctagagttgatgttgttgtcaactgctccggggtgttcagggatctcttcatcaatcagatgaatctccttgaccgaggaatcaagatggttgctgagcttgatgaaccggaagaccaaaactttgtcaggaaacatgcactagaacaggcaaaaacacttcggaattgatgttcgtgaagcagctactagggtcttctcaaacgcttcgggttcttactcttccacatcaacctagctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="75070" stop="73626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74770" g_stop="74208" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74109" g_stop="73926" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="747" r_length="184" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E263287" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74770" e_stop="74208"/>
          <exon e_start="74109" e_stop="73926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAGGTATTGGTCTATCCTCCTTTTCCACTGATTCTGCACTGGATTGGTACATTAGTGCAATGTCAGATCATTACTTATCATTTGTTTTGTTTTGTATACAGATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACAC-TCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTG</genome_strand>
        <mrna_strand>TTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG..................................................................................................ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCC-ACATCAACCTAGCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E736732" ref_strand="+" ref_description="SGN-E736732 [LC06DH09]">
      <seq>attgaggagatctatcgaggaaatgacaatggagtcttgcgagatgtggagctgcttcgtcaaattactgaggcatcacgtggagcaatatcagccttcgttgaacgctcaaccaacaacaagggtcaggttgttgacaattctgacaagctgacctcactccttggtttttctattaatgaaccatggatccagtatttatcaaacacccaattctacagagctgatagggaaaagctcagagtcctgtttcagttcttgggagagtgtctgaagctaattgtggctaataacgaggtgggaagtttgaaacaggctcttgaagggaaatatgttgaaccaggtcctggaggggatccaatcagaaatccgaaagttttgcctacagggaaaaacatccatgctttggacccacaggctattcccacaacagcagcactgcagagcgccaagatagtggttgaaagattgttggagaggcaaaagattgacaacgggggcaagtacccggaaactgttgctctggtgctttggggaacagataacatcaagacttatggagagtcgttggcacaggttatgtggatgattggtgttaggccagttgcagacacacttggacgcgttaaccgagtggaaccagttagtcttgaagagcttggaaggcctagagttgatgttgttgtcaactgctccggggtgttcagggatctcttcatcaatcagatgaatctccttgaccgaggaatcaagatggttgctgagcttgatgaaccggaagaccaaactttgtcaggaacatgcactagaacaggcaaaacactcggaattgatgttcgtgaagcagctactagggtcttctcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="75233" stop="73666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74933" g_stop="74208" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74109" g_stop="73966" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="867" r_length="141" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E736732" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74933" e_stop="74208"/>
          <exon e_start="74109" e_stop="73966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAGGTATTGGTCTATCCTCCTTTTCCACTGATTCTGCACTGGATTGGTACATTAGTGCAATGTCAGATCATTACTTATCATTTGTTTTGTTTTGTATACAGATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAAC</genome_strand>
        <mrna_strand>ATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG..................................................................................................ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACC-AAACTTTGTCAGG-AACATGCACTAGAACAGGC-AAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E739510" ref_strand="+" ref_description="SGN-E739510 [LC17DA06]">
      <seq>catatttcttcccttccatctattctggctgccacagttggcagaaatattgaggagatctatcgaggaaatgacaatggagtcttgcgagatgtggagctgcttcgtcaaattactgaggcatcacgtggagcaatatcagccttcgttgaacgctcaaccaacaacaagggtcaggttgttgacaattctgacaagctgacctcactccttggtttttctattaatgaaccatggatccagtatttatcaaacacccaattctacagagctgatagggaaaagctcagagtcctgtttcagttcttgggagagtgtctgaagctaattgtggctaataacgaggtgggaagtttgaaacaggctcttgaagggaaatatgttgaaccaggtcctggaggggatccaatcagaaatccgaaagttttgcctacagggaaaaacatccatgctttggacccacaggctattcccacaacagcagcactgcagagcgccaagatagtggttgaaagattgttggagaggcaaaagattgacaacgggggcaagtacccggaaactgttgctctggtgctttggggaacagataacatcaagacttatggagagtcgttggcacaggttatgtggatgattggtgttaggccagttgcagacacacttggacgcgttaaccgagtggaaccagttagtcttgaagagcttggaaggcctagagttgatgttgttgtcaactgctccggggtgttcagggatctcttcatcaatcagatgaatctccttgaccgaggaatcaagatggttgctgagcttgatgaaccgggaagaccaaaactttgtcaggaaacatgcactagaacaggcaaaaacactcggaattgatgttcgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="75280" stop="73691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74981" g_stop="74208" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74109" g_stop="73991" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="894" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E739510" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74981" e_stop="74208"/>
          <exon e_start="74109" e_stop="73991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAGGTATTGGTCTATCCTCCTTTTCCACTGATTCTGCACTGGATTGGTACATTAGTGCAATGTCAGATCATTACTTATCATTTGTTTTGTTTTGTATACAGATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACC-GGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGA</genome_strand>
        <mrna_strand>CATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG..................................................................................................ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E737176" ref_strand="+" ref_description="SGN-E737176 [LC08DA08]">
      <seq>gtgatcctccaaccgccatggaggcagttgccactcttgtcaacattgctgcattggaccgtgctgaagatgatatttcttcccttccatctattctggctgccacagttggcagaaatattgaggagatctatcgaggaaatgacaatggagtcttgcgggatgtggagctgcttcgtcaaattactgaggcatcacgtggagcaatatcagccttcgttgaacgctcaaccaacaacaagggtcaggttgttgacaattctgacaagctgacctcactccttggtttttctattaatgaaccatggatccagtatttatcaaacacccaattctacagagctgatagggaaaagctcagagtcctgtttcagttcttgggagagtgtctgaagctaattgtggctaataacgaggtgggaagtttgaaacaggctcttgaagggaaatatgttgaaccaggtcctggaggggatccaatcagaaatccgaaagttttgcctacagggaaaaacatccatgctttggacccacaggctattcccacaacagcagcactgcagagcgccaagatagtggttgaaagattgttggagaggcaaaagattgacaacgggggcaagtacccggaaactgttgctctggtgctttggggaacagataacatcaagacttatggagagtcgttggcacaggttatgtggatgattggtgttaggccagttgcagacacacttggacgcgttaaccgagtggaaccagttagtcttgaagagcttggaaggcctagagttgatgttgttgtcaactgctccggggtgttcagggatctcttcatcaatcagatgaatctccttgaccgaggaatcaagatgggtgctgagcttgatgaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="75352" stop="73759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75052" g_stop="74208" g_length="845"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="845" r_length="845" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74109" g_stop="74059" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="896" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E737176" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75052" e_stop="74208"/>
          <exon e_start="74109" e_stop="74059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACCTCCAACCGCCATGGAGGCAGTTGCCACTCTTGTCAACATTGCTGCATTGGACCGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAGGTATTGGTCTATCCTCCTTTTCCACTGATTCTGCACTGGATTGGTACATTAGTGCAATGTCAGATCATTACTTATCATTTGTTTTGTTTTGTATACAGATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCG</genome_strand>
        <mrna_strand>GTGATCCTCCAACCGCCATGGAGGCAGTTGCCACTCTTGTCAACATTGCTGCATTGGACCGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGGGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG..................................................................................................ATGAATCTCCTTGACCGAGGAATCAAGATGGGTGCTGAGCTTGATGAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E738306" ref_strand="+" ref_description="SGN-E738306 [LC13AG03]">
      <seq>ccttctgccctgtggacttcacatcattggtgaacctccaaccgccatggaggcagttgccactcttgtcaacattgctgcattggaccgtgctgaagatgatatttcttcccttccatctattctggctgccacagttggcagaaatattgaggagatctatcgaggaaatgacaatggagtcttgcgagatgtggagctgcttcgtcaaattactgaggcatcacgtggagcaatatcagccttcgttgaacgctcaaccaacaacaagggtcaggttgttgacaattctgacaagctgacctcactccttggtttttctattaatgaaccatggatccagtatttatcaaacacccaattctacagagctgatagggaaaagctcagagtcctgtttcagttcttgggagagtgtctgaagctaattgtggctaataacgaggtgggaagtttgaaacaggctcttgaagggaaatatgttgaaccaggtcctggaggggatccaatcagaaatccgaaagttttgcctacagggaaaaacatccatgctttggacccacaggctattcccacaacagcagcactgcagagcgccaagatagtggttgaaagattgttggagaggcaaaagattgacaacgggggcaagtacccggaaactgttgctctggtgctttggggaacagataacatcaagacttatggagagtcgttggcacaggttatgtggatgattggtgttaggccagttgcagacacacttggacgcgttaaccgagtggaaccagttagtcttgaagagcttggaaggcctagagttgatgttgttgtcaactgctccggggtgttcagggatctcttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="75380" stop="73914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75081" g_stop="74214" g_length="868"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="868" r_length="868" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E738306" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75081" e_stop="74214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTGCCCTGTGGACTTCACATCATTGGTGAACCTCCAACCGCCATGGAGGCAGTTGCCACTCTTGTCAACATTGCTGCATTGGACCGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATC</genome_strand>
        <mrna_strand>CCTTCTGCCCTGTGGACTTCACATCATTGGTGAACCTCCAACCGCCATGGAGGCAGTTGCCACTCTTGTCAACATTGCTGCATTGGACCGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E248711" ref_strand="+" ref_description="SGN-E248711 [cLEF-58-K4]">
      <seq>atcgaggaaatgacaatggagtcttgcgagatgtggagctgcttcgtcaaattactgaggcatcacgtggagcaatatcagccttcgttgaacgctcaaccaacaacaagggtcaggttgttgacaattctgacaagctgacctcactccttggtttttctattaatgaaccatggatccagtatttatcaaacacccaattctacagagctgatagggaaaagctcagagtcctgtttcagttcttgggagagtgtctgaagctaattgtggctaataacgaggtgggaagtttgaaacaggctcttgaagggaaatatgttgaaccaggtcctggaggggatccaatcagaaatccgaaagttttgcctacagggaaaaacatccatgctttggacccacaggctattcccacaacagcagcactgcagagcgccaagatagtggttgaaagattgttggagaggcaaaagattgacaacgggggcaagtacccggaaactgttgctctggtgctttggggaacagataacatcaagacttatggagagtcgttggcacaggttatgtggatgattggtgttaggccagttgcagacacacttggacgcgttaaccgagtggaaccagttagtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="75220" stop="73982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74920" g_stop="74282" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E248711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74920" e_stop="74282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTG</genome_strand>
        <mrna_strand>ATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E323403" ref_strand="+" ref_description="SGN-E323403 [cTOC-7-G15]">
      <seq>cgtgctgaagatgatatttcttcccttggatctattgtggctgccacagttggcagaaatattgaggagatctatcgaggaaatgacaatggagtcttgcgagatgtggagctgcttcgtcaaattactgaggcatcacgtggagcaatatcagccttcgttgaacgctcaaccaacaacaagggtcaggttgttgacaattctgacaagctgacctcactccttggtttttctattaatgaaccatggatccagtatttatcaaacacccaattctacagagctgatagggaaaagctcagagtcctgtttcagttcttgggagagtgtctgaagctaattgtggctaataacgaggtgggaagtttgaaacaggctcttgaagggaaatatgttgaaccaggtcctggaggggatccaatcagaaatccgaaagttttgcctacagggaaaaacatccatgctttggacccacaggctattcccacaacagcagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="75293" stop="74194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74993" g_stop="74494" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E323403" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74993" e_stop="74494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACT</genome_strand>
        <mrna_strand>CGTGCTGAAGATGATATTTCTTCCCTTGGATCTATTGTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E279130" ref_strand="+" ref_description="SGN-E279130 [cLEL-4-F1]">
      <seq>gcacgaggcagttgccactcttgtcaacattgctgcattggaccgtgctgaagatgatatttcttcccttccatctattctggctgccacagttggcagaaatattgaggagatctatcgaggaaatgacaatggagtcttgcgagatgtggagctgcttcgtcaaattactgaggcatcacgtggagcaatatcagccttcgttgaacgctcaaccaacaacaagggtcaggttgttgacaattctgacaagctgacctcactccttggtttttctattaatgaaccatggatccagtatttatcaaacacccaattctacagagctgatagggaaaagctcagagtcctgtttcagttcttgggagagtgtctgaagctaattgtggctaataacgaggtgggaagtttgaaacaggctcttgaagggaaatatgttgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="75332" stop="74293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75037" g_stop="74593" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E279130" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75037" e_stop="74593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGAGGCAGTTGCCACTCTTGTCAACATTGCTGCATTGGACCGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACC</genome_strand>
        <mrna_strand>GCA-CGAGGCAGTTGCCACTCTTGTCAACATTGCTGCATTGGACCGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E316923" ref_strand="+" ref_description="SGN-E316923 [cTOA-27-H3]">
      <seq>tcagattgtgagctctatcattagtactgctagacagtgtaatcttgacaaggacgttgatcttccagatgaagagaaggaaatagatgccaaagaacgtgaccttgtggtaggaaaagtatatgctaagattatggagattgagtctcgtcttctgccctgtggacttcacatcattggtgaacctccaaccgccatggaggcagttgccactcttgtcaacattgctgcattggaccgtgctgaagatgatatttcttcccttccatctattctggctgccacagttggcagaaatattgaggagatctatcgaggaaatgacaatggagtcttgcgagatgtggagctgcttcgtcaaattactgaggcatcacgtggagcaatatcagccttcgttgaacgctcaaccaacaacaagggtcaggttgttgacaattctgacaagctgacctcactccttggtttttctattaatgaaccatggatccagtatttatcaaacacccaattctacagagctgatagggaaaagctcagagtcctgtttcagttcttgggagagtgtctgaaagctattgtggctaataacgaggtgggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="75531" stop="74329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75231" g_stop="74629" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E316923" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75231" e_stop="74629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATTGTGAGCTCTATCATTAGTACTGCTAGACAGTGTAATCTTGACAAGGACGTTGATCTTCCAGATGAAGAGAAGGAAATAGATGCCAAAGAACGTGACCTTGTGGTAGGAAAAGTATATGCTAAGATTATGGAGATTGAGTCTCGTCTTCTGCCCTGTGGACTTCACATCATTGGTGAACCTCCAACCGCCATGGAGGCAGTTGCCACTCTTGTCAACATTGCTGCATTGGACCGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAG</genome_strand>
        <mrna_strand>TCAGATTGTGAGCTCTATCATTAGTACTGCTAGACAGTGTAATCTTGACAAGGACGTTGATCTTCCAGATGAAGAGAAGGAAATAGATGCCAAAGAACGTGACCTTGTGGTAGGAAAAGTATATGCTAAGATTATGGAGATTGAGTCTCGTCTTCTGCCCTGTGGACTTCACATCATTGGTGAACCTCCAACCGCCATGGAGGCAGTTGCCACTCTTGTCAACATTGCTGCATTGGACCGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAAGCTATTGTGGCTAATAACGAGGTGGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E333198" ref_strand="+" ref_description="SGN-E333198 [cTOD-20-M11]">
      <seq>tgatgcagttctccactttggtactcatggttctcttgagttcatgccaggaaaacaggtgggaatgagcgatgcatgtttcccagatagtctcattggaaacattccaaatgtctattactatgcagcaaacaatccatccgaagcaactattgccaaacgaaggagttatgcaaataccattagctacttgactccccctgctgagaatgccggactctacaagggactcaagcagcttagtgagctcattgcttcgtaccaatcactgaaagactcaggtcgtggccctcagattgtgagctctatcattagtactgctagacagtgtaatcttgacaaggacgttgatcttccagatgaagagaaggaaatagatgccaaagaacgtgaccttgtggtaggaaaagtatatgctaagattatggagattgagtctcgtcttctgccctgtggacttcacatcattggtgaacctccaaccgccatggaggcagttgccactcttgtcaacattgctgcattggaccgtgctgaagatgatatttcttcccttccatctattctggctgccacagttggcagaaatattgaggagatctatcgaggaaatgacaatggagtcttgcgagatgtggagctgcttcgtcaattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="75822" stop="74565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75522" g_stop="74865" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E333198" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75522" e_stop="74865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCAGTTCTCCACTTTGGTACTCATGGTTCTCTTGAGTTCATGCCAGGAAAACAGGTGGGAATGAGCGATGCATGTTTCCCAGATAGTCTCATTGGAAACATTCCAAATGTCTATTACTATGCAGCAAACAATCCATCCGAAGCAACTATTGCCAAACGAAGGAGTTATGCAAATACCATTAGCTACTTGACTCCCCCTGCTGAGAATGCCGGACTCTACAAGGGACTCAAGCAGCTTAGTGAGCTCATTGCTTCGTACCAATCACTGAAAGACTCAGGTCGTGGCCCTCAGATTGTGAGCTCTATCATTAGTACTGCTAGACAGTGTAATCTTGACAAGGACGTTGATCTTCCAGATGAAGAGAAGGAAATAGATGCCAAAGAACGTGACCTTGTGGTAGGAAAAGTATATGCTAAGATTATGGAGATTGAGTCTCGTCTTCTGCCCTGTGGACTTCACATCATTGGTGAACCTCCAACCGCCATGGAGGCAGTTGCCACTCTTGTCAACATTGCTGCATTGGACCGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACT</genome_strand>
        <mrna_strand>TGATGCAGTTCTCCACTTTGGTACTCATGGTTCTCTTGAGTTCATGCCAGGAAAACAGGTGGGAATGAGCGATGCATGTTTCCCAGATAGTCTCATTGGAAACATTCCAAATGTCTATTACTATGCAGCAAACAATCCATCCGAAGCAACTATTGCCAAACGAAGGAGTTATGCAAATACCATTAGCTACTTGACTCCCCCTGCTGAGAATGCCGGACTCTACAAGGGACTCAAGCAGCTTAGTGAGCTCATTGCTTCGTACCAATCACTGAAAGACTCAGGTCGTGGCCCTCAGATTGTGAGCTCTATCATTAGTACTGCTAGACAGTGTAATCTTGACAAGGACGTTGATCTTCCAGATGAAGAGAAGGAAATAGATGCCAAAGAACGTGACCTTGTGGTAGGAAAAGTATATGCTAAGATTATGGAGATTGAGTCTCGTCTTCTGCCCTGTGGACTTCACATCATTGGTGAACCTCCAACCGCCATGGAGGCAGTTGCCACTCTTGTCAACATTGCTGCATTGGACCGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTC-AATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E708175" ref_strand="+" ref_description="SGN-E708175 [FA35AC01]">
      <seq>caattttggaattggaagtgaggtcttcagctacagttccttctctgcaagttccaacctttcatcataccccttattattgtgaggaaaacatctacctgctatgcaaaaagctatgtgatgacggactggcagatcctaatggttctgatctgtttgttattttcatttccaatgagaagaagcagattcctctgtggcatcagaaggctagccagcgagcagagggagttattctgtgggactatcatgtcatctgtgtacagaagaagagaaatgagaactcttcgtcactagtgtgggatttagattcaagtcttccgtttccatcatctcttggcacttatgtcgctgacagcattcgtccatcaattcagatattttctgaattcaaaaggttttttcgagttgtgcatgcccctatattcctccgacacttcgcatcagatagaagacatatgaaggattctgctggaaactggactgcagacccgccatcatatgaagctattgttgctgaagatggagctgtacacaacctgaacgagtacattacagtctctcccgatgatgtagtgaagaatgtggaagctgataccgtcaatgttgttctctccgagaaacttggtgtagtaattggtgaagatgatttgttgggatttttctctttgatttcctgatgagagttgagaaaaaacttgctagcttgaaagatgaaatgatgatcttggatttttacatgtaaaaagaaaaagaaagtgtcttgtgagagtttttgcaaatggaatggaaaatattcttgtgttagacaagttcttgtttttggggagttattttattttatagaacttgtatagacattttgatgcccgaccccgtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="90391" stop="84467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90091" g_stop="90010" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90009" i_stop="87341" i_length="2669">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87340" g_stop="87235" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="188" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87234" i_stop="86673" i_length="562">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86672" g_stop="86595" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="266" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86594" i_stop="86473" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86472" g_stop="86342" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="397" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86341" i_stop="85877" i_length="465">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.292" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85876" g_stop="85752" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="522" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85751" i_stop="85128" i_length="624">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85127" g_stop="84767" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="883" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E708175" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90091" e_stop="90010"/>
          <exon e_start="87340" e_stop="87235"/>
          <exon e_start="86672" e_stop="86595"/>
          <exon e_start="86472" e_stop="86342"/>
          <exon e_start="85876" e_stop="85752"/>
          <exon e_start="85127" e_stop="84767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTGGAATTGGAAGTGAGGTCTTCAGCTACAGTTCCTTCTCTGCAAGTTCCAACCTTTCATCATACCCCTTATTATTGGTACATTCTCTCTCTCTCTCTCTCTGTGCTTTTTTGGGGGTGGAGGGGTATGTGTGTGTATAGATTCTTGAATGATAGACATAGCTGATGATGATTACTGTTTGTTTATGAAATTTGATGCATAATTGAGGATACCCGTTTCATTTGAAGACCTAATTAAGTTAGAATTGGTACTCTGTGTGTGTGTGTGTTTGCCTTTTTAAGGGGTGGGGCGTGTAAAAATGCATTCTTGAAATACAGATACAGCTGGTGATTACTGTTGTTTGGGGTGGGGTGGGGGGAGGTGGGGGTGTGTAAAAATGCATTCTTGAAAATACAGACATTGCTGGTGATTGGGCGGTGGGGGTGGGGCCGTGGGGGTGTGTAAAAATGCGTTCTTGAAATACAGACACAACTGGTAATTATTGTCGTTTGGGAGGGAGGTGGGTGGTGCTGTTTAAAAATGCGTTCTTGAAATATAGACATAGCTGGTGATTACTGATGTGTAACACCAGTACATTTGGAATTGGTAGTCAGTCCTATTTCCGGTAGGGGCAGTTGTCAATTGAATCAGATTTTGACCATTATTTTGATGTATGTAATAGTGCGAAAAGTAGAGCCAGCTCCAAGTTGTTCCGTTGAGTTTCTCGACCCTTTGGCTGAGGATGAGTCAGTTCTATTTCTCGATGTGGCAGGGAAGGGATATTTGTTTTGGGGTGCGGATGTGTAAATGCATTCTTGAAATACAGACATAGCTGGTGACTACTGTTATTTGGAGAGAGGTGTGGGGGAGGAGGTGGGACATAGTTGGTGATTACTGTTTGATTATGAAATCTGATGTACAAATGCTGATACCCTTTTCGTTTAAAGACATAATTTAAGCAAATTCTACAGCTGACCAGTTTTAGATCCACAATCACTACAACATACCGTATGAAATCCCACAAGTGGGGTCTAGGGAGGATAGAGTGTACCAGTCCTTACTCCTACCTCGTGTAGGTAGAGATGTTGCTTTTGAAAGACCCTCTGCTCAAGTGTAGCAATTCAAACTATTTATGGAAAGAAAAAAAGCTATAGGGAAGAAAACATGGCAACTAAAAAGGAAAGAAGTGCAGAGCATACAAGAAAAGAACAGTAACAACAATAGGATAGTGCGATAAGCAAAACACAATAAACAACTGTTGATGATAGATATCAAAAGCAAGCAACTACAAGCTTACAATTAATACTACAATAGACACCGCCAAGCCTAAACCTGTCGAAAAGCAAGACAATGCTCCACAACATACTCTTTTGTTATGTAGTATGAAAATATACATGAAATTTGGTGCAGGAAAGATTGTACGGGCGCCATTTTGTACAAAAAATGTTTGTGGAGTTTGTAGTTGAGCCAAATTTTTTTTGGTAAATGTCAATTAATGAAAGGATTTAGTCTTCGTTTGCTTCAGTAAGGTGTTACTTTGGTAGGCTGAACTGATTTAGCTGATGGCTTTTGTTCGGGGAAAGGGAGAGCTTTATTAAGTAATTTCATGATTTTTACAAATATCTGGTAATTTTGAACTGAACTTATCTAATGAGAATTCAAGATATGAATTTGGAACTTGTTAATTGTTTATTTGGTAAAAGCAATACTGAATGAGTAAAGAGAAAAAGAACTTGGCAATCTATGATTCATAGTATTTTTTTCCTTATTGATCTTTTTGAATTCCATATTCGAAGTTGCGATCAGATCTATAACAAAAAGAATCAGTTCAATATATTTCGTATGTATTCATAGGTAATATATTGGATTTGTATCAAATTTCGGATCAATCTATGTTGAGTGATTGCCTTCATTATGTAGTTGCTACCAAGTACCACTATTTTGGTTTTGGATCTTCAAATCCTTCGCGTAGGAGATCCAAACCCATTTTTTAATCCTTTGAGAAAAATATTCATTCTCTTCCTAAAAGTAGGACGTAGAAGCAACAAAGATTTTTTTTTCTATTCATCCTTGACCTCACTCAAGAATTGTTTTTATCCAATCCGCAGGAATTGATAGAAAAGGCAAATCATGTATAATACACCGGATCCGGCTCAGTTATTAATAGAGTGAATAGATATTGAAAACTTTCTTCTGATTCAAAATCATAGTGTAACGTGTATCCTCCCCTGTAACAAAAAATTGATTTTTGTTCAAGAATGAAATCTTATTGGAACTATCCACATCTAGTTCATCCTTTGGAACCATATCACATCCTGGAAATGATGAAATAGGATGATTGAGACGGTATTTTGTAAATATGTAATTATCTTGAATATATTAACCATTTCTTTATTTTGGGATCGCCTGGAAGGGACAAAAGAAAGATCTTGTTGTTTCTTTAACTTGGAGTATCTCTATGAGCATATTCCTGCAGAAATGCTTCGCCTGTGACCTGTCCTAAAGATAAATGTTCATAAAGAAAAGGGAACTTTTGAAATGAATCTATTTATGTAGAATTATTCAACTTAAGTACTTCCCTTTTCAAATTTGACATGTCTGTTTTTATTTCCATTCACATTAAGCTTGCTTACTGAATATATAGAGGGTTCATATATTTGACTCGGGTTGATCTTGATTTGAGGCATAGTTGATTGATTGAGAAAAATTACTTGCACTAACAATAAGTATTCTTCTGTTTGCTTTCTGTATTTACTTTCTATTACAGTGAGGAAAACATCTACCTGCTATGCAAAAAGCTATGTGATGACGGACTGGCAGATCCTAATGGTTCTGATCTGTTTGTTATTTTCATTTCCAATGAGAAGAAGCAGGCAACTACTCTTTGCTCTTCCTTTGGTTACTGTCTTAAGAAGTTCATTCATTGCATTGATACTTCATCTCAATGAAAATGATAGTAGTATAATATCTGTTCCTCTACTAGTAATGGTAATGCCGTAATGTATTGCGTTAAACTAACAAATGGTTAGATGGATAACAAAATAATGTGAACTGCAAGCCTTTGTTTGCAAACGGGATGTACTAACGTTTAGAACTTAATCTTTCAAATTTTGTTTACCATTTGATAATTCTTTGTAATGCATTAATCAGTTCAGTTTTATCTCCCTGTCCCCAATACAGCAAAGTAAAAGGATGAAGGGAAGTTCATGTTTGAATGGATCTGAAAATGGTCCAGGACACTTAAATAAGTTAAAGATAAATTGGACGTGAACAGTCTTCAAAACTAAATCGATTCAATACTATGAGTCCGTTTCTAGTGTATAATGATTTTCTAACTTAGTTGTTTGAATAAGGAGAGCGACAGAATGGCTGACAGTTAAGTTGTACCTAGCATAATGTTTTTGGGGATGTTAATTTATAATTATATGCTTTCAGATTCCTCTGTGGCATCAGAAGGCTAGCCAGCGAGCAGAGGGAGTTATTCTGTGGGACTATCATGTCATCTGTGTACAGGTTAGATTAACCTACTGTTGTCTAGTATAAACTGAAAATGGTTAACTATATGGTTTTTATTTTTCTCTACTATAGCTATTGGGATTTCATGTCCTTGAGAAAATCTGTTTGGATGCTTGCAGAAGAAGAGAAATGAGAACTCTTCGTCACTAGTGTGGGATTTAGATTCAAGTCTTCCGTTTCCATCATCTCTTGGCACTTATGTCGCTGACAGCATTCGTCCATCAATTCAGATATTTTCTGAATTCAAAAGGTAATAACTGTTCTAGCCCCAAAAAAGAAACATGATTTCTTGAATTTTTTGCTCTTAAACGATGAAGAACTGTTATTTCATTTTCTTTTATAGAAGCTAGATATTTCATTTTTGCTCAAATTATAAGATTCTTGATATAGTGATACAAAAGTAGTTCTATTGCTCTTCTGTGTATTGTTTTTCTCCATTCCTTCCTGAAGTCAACCCAACCTTAAAATGTTTCTAACTTTTCGTAAAATTTATGCTCTACCTAGTGAATCTCATTTTTTGTTTATCTTTAAAAATTGATTTCACAAGTCCACCCTAAAGGGGTGGTCTCATTAAAGAAATGCTCTTTCACTGACCTTTTTCTGAAGAAGAAACCAGAGTATGTTTTTCTTCTGGTGCTAAGCAATGTTGCCAACCTTGTGCTTGGAATAATAAGCTTACTGCAACCACATGAAAGAACAACTTTGGCCATTTCAGGTTTTTTCGAGTTGTGCATGCCCCTATATTCCTCCGACACTTCGCATCAGATAGAAGACATATGAAGGATTCTGCTGGAAACTGGACTGCAGACCCGCCATCATATGAAGCTATTGTTGCTGAAGGTAAATGCAGGAAATAAAAGTTTGCAAGATTATGCTTTTGTCATTTGTTGGTACATTTGGTATATAAAGATAACTTTGTTCCTTCGATTAATATTTTTATCCCGTAACTACTCAAATGCCGTCTCTAATTTGATTATTCTTTTGTTATTTTTGCCAAAGTTCATCAATTTCATGATAAATATCTCGATAAGGAATGACATTTTTGCTTGATAGTCAATTAGTTTGCTCTATATAACCTTTTGATTTGTACACTTAAACAAATTTAGAGGTGGATATCGGTGCATCAAAAATTGAAATACGTGGTTGTATGCCATACCAAACTGACTCGAAGTTCGAATCTCCCCTGCTGGTTTTATTTCCAATTATCTGATCTCATTTTATGTAGTGTCACTTTTCATAGTTAACTTATGGAATAGAACATATAGGAACCAGTAGAACTAAGCCTTTTGAATATATTTTCATTCGTTAAAATTGAATCGAGGAGCACATTTGCATTACCTAATGATATCTGATAGGTGTTTTGTATGATTTTGGGTCATTTGGTACAATTAGTGAGAAAATATGAAACCCTCTCGCTTGCTCTAGTTACGATTTTTGTTTTCATTCTGCCTTTTGCTTGTACAGATGGAGCTGTACACAACCTGAACGAGTACATTACAGTCTCTCCCGATGATGTAGTGAAGAATGTGGAAGCTGATACCGTCAATGTTGTTCTCTCCGAGAAACTTGGTGTAGTAATTGGTGAAGATGATTTGTTGGGATTTTTCTCTTTGATTTCCTGATGAGAGTTGAGAAAAAACTTGCTAGCTTGAAAGATGAAATGATGATCTTGGATTTTTACATGTAAAAAGAAAAAGAAAGTGTCTTGTGAGAGTTTTTGCAAATGGAATGGAAAATATTCTTGTGTTAGACAAGTTCTTGTTTTTGGGGAGTTATTTTATTTTATAGAACTTGTATAGACATTTTGATGCCCGACCCCGTGCAT</genome_strand>
        <mrna_strand>CAATTTTGGAATTGGAAGTGAGGTCTTCAGCTACAGTTCCTTCTCTGCAAGTTCCAACCTTTCATCATACCCCTTATTATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAAAACATCTACCTGCTATGCAAAAAGCTATGTGATGACGGACTGGCAGATCCTAATGGTTCTGATCTGTTTGTTATTTTCATTTCCAATGAGAAGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCTGTGGCATCAGAAGGCTAGCCAGCGAGCAGAGGGAGTTATTCTGTGGGACTATCATGTCATCTGTGTACAG..........................................................................................................................AAGAAGAGAAATGAGAACTCTTCGTCACTAGTGTGGGATTTAGATTCAAGTCTTCCGTTTCCATCATCTCTTGGCACTTATGTCGCTGACAGCATTCGTCCATCAATTCAGATATTTTCTGAATTCAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTCGAGTTGTGCATGCCCCTATATTCCTCCGACACTTCGCATCAGATAGAAGACATATGAAGGATTCTGCTGGAAACTGGACTGCAGACCCGCCATCATATGAAGCTATTGTTGCTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTGTACACAACCTGAACGAGTACATTACAGTCTCTCCCGATGATGTAGTGAAGAATGTGGAAGCTGATACCGTCAATGTTGTTCTCTCCGAGAAACTTGGTGTAGTAATTGGTGAAGATGATTTGTTGGGATTTTTCTCTTTGATTTCCTGATGAGAGTTGAGAAAAAACTTGCTAGCTTGAAAGATGAAATGATGATCTTGGATTTTTACATGTAAAAAGAAAAAGAAAGTGTCTTGTGAGAGTTTTTGCAAATGGAATGGAAAATATTCTTGTGTTAGACAAGTTCTTGTTTTTGGGGAGTTATTTTATTTTATAGAACTTGTATAGACATTTTGATGCCCGACCCCGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E227628" ref_strand="-" ref_description="SGN-E227628 [cLEL-30-J7]">
      <seq>atttagattcaagtcttccgtttccatcatctcttggcacttatgtcgctgacagcattcgtccatcaattcagatattttctgaattcaaaaggttttttcgagttgtgcatgcccctatattcctccgacacttcgcatcagatagaagacatatgaaggattctgctggaaactggactgcagacccgccatcatatgaagctattgttgctgaaggagctgtacacaacctgaacgagtacattacagtctctcccgatgatgtagtgaagaatgtggaagctgataccgtcaatgttgttctctccgagaaacttggtgtagtaattggtgaagatgatttgttgggatttttctctttgatttcctgatgagagttgagaaaaaacttgctagcttgaaagatgaaatgatgatcttggatttttacatgtaaaaagaaaaagaaagtgtcttgtgagagtttttgcaaatggaatggaaaatattcttgtgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="86735" stop="84538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86435" g_stop="86342" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86341" i_stop="85877" i_length="465">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.292" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85876" g_stop="85752" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="217" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85751" i_stop="85128" i_length="624">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.909" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85127" g_stop="84857" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="487" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="518"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E227628" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227628" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86435" e_stop="86342"/>
          <exon e_start="85876" e_stop="85752"/>
          <exon e_start="85127" e_stop="84857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGATTCAAGTCTTCCGTTTCCATCATCTCTTGGCACTTATGTCGCTGACAGCATTCGTCCATCAATTCAGATATTTTCTGAATTCAAAAGGTAATAACTGTTCTAGCCCCAAAAAAGAAACATGATTTCTTGAATTTTTTGCTCTTAAACGATGAAGAACTGTTATTTCATTTTCTTTTATAGAAGCTAGATATTTCATTTTTGCTCAAATTATAAGATTCTTGATATAGTGATACAAAAGTAGTTCTATTGCTCTTCTGTGTATTGTTTTTCTCCATTCCTTCCTGAAGTCAACCCAACCTTAAAATGTTTCTAACTTTTCGTAAAATTTATGCTCTACCTAGTGAATCTCATTTTTTGTTTATCTTTAAAAATTGATTTCACAAGTCCACCCTAAAGGGGTGGTCTCATTAAAGAAATGCTCTTTCACTGACCTTTTTCTGAAGAAGAAACCAGAGTATGTTTTTCTTCTGGTGCTAAGCAATGTTGCCAACCTTGTGCTTGGAATAATAAGCTTACTGCAACCACATGAAAGAACAACTTTGGCCATTTCAGGTTTTTTCGAGTTGTGCATGCCCCTATATTCCTCCGACACTTCGCATCAGATAGAAGACATATGAAGGATTCTGCTGGAAACTGGACTGCAGACCCGCCATCATATGAAGCTATTGTTGCTGAAGGTAAATGCAGGAAATAAAAGTTTGCAAGATTATGCTTTTGTCATTTGTTGGTACATTTGGTATATAAAGATAACTTTGTTCCTTCGATTAATATTTTTATCCCGTAACTACTCAAATGCCGTCTCTAATTTGATTATTCTTTTGTTATTTTTGCCAAAGTTCATCAATTTCATGATAAATATCTCGATAAGGAATGACATTTTTGCTTGATAGTCAATTAGTTTGCTCTATATAACCTTTTGATTTGTACACTTAAACAAATTTAGAGGTGGATATCGGTGCATCAAAAATTGAAATACGTGGTTGTATGCCATACCAAACTGACTCGAAGTTCGAATCTCCCCTGCTGGTTTTATTTCCAATTATCTGATCTCATTTTATGTAGTGTCACTTTTCATAGTTAACTTATGGAATAGAACATATAGGAACCAGTAGAACTAAGCCTTTTGAATATATTTTCATTCGTTAAAATTGAATCGAGGAGCACATTTGCATTACCTAATGATATCTGATAGGTGTTTTGTATGATTTTGGGTCATTTGGTACAATTAGTGAGAAAATATGAAACCCTCTCGCTTGCTCTAGTTACGATTTTTGTTTTCATTCTGCCTTTTGCTTGTACAGATGGAGCTGTACACAACCTGAACGAGTACATTACAGTCTCTCCCGATGATGTAGTGAAGAATGTGGAAGCTGATACCGTCAATGTTGTTCTCTCCGAGAAACTTGGTGTAGTAATTGGTGAAGATGATTTGTTGGGATTTTTCTCTTTGATTTCCTGATGAGAGTTGAGAAAAAACTTGCTAGCTTGAAAGATGAAATGATGATCTTGGATTTTTACATGTAAAAAGAAAAAGAAAGTGTCTTGTGAGAGTTTTTGCAAATGGAATGGAAA</genome_strand>
        <mrna_strand>ATTTAGATTCAAGTCTTCCGTTTCCATCATCTCTTGGCACTTATGTCGCTGACAGCATTCGTCCATCAATTCAGATATTTTCTGAATTCAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTCGAGTTGTGCATGCCCCTATATTCCTCCGACACTTCGCATCAGATAGAAGACATATGAAGGATTCTGCTGGAAACTGGACTGCAGACCCGCCATCATATGAAGCTATTGTTGCTG-A-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GGAGCTGTACACAACCTGAACGAGTACATTACAGTCTCTCCCGATGATGTAGTGAAGAATGTGGAAGCTGATACCGTCAATGTTGTTCTCTCCGAGAAACTTGGTGTAGTAATTGGTGAAGATGATTTGTTGGGATTTTTCTCTTTGATTTCCTGATGAGAGTTGAGAAAAAACTTGCTAGCTTGAAAGATGAAATGATGATCTTGGATTTTTACATGTAAAAAGAAAAAGAAAGTGTCTTGTGAGAGTTTTTGCAAATGGAATGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E227269" ref_strand="-" ref_description="SGN-E227269 [cLEL-30-J7]">
      <seq>agcattcgtccatcaattcagatattttctgaattcaaaaggttttttcgagttgtgcatgcccctatattcctccgacacttcgcatcagatagaagacatatgaaggattctgctggaaactggactgcagacccgccatcatatgaagctattgttgctgaaggagctgtacacaacctgaacgagtacattacagtctctcccgatgatgtagtgaagaatgtggaagctgataccgtcaatgttgttctctccgagaaacttggtgtagtaattggtgaagatgatttgttgggatttttctctttgatttcctgatgagagttgagaaaaaacttgctagcttgaaagatgaaatgatgatcttggatttttacatgtaaaaagaaaaagaaagtgtcttgtgagagtttttgcaaatggaatggaaaatattcttgtgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="86682" stop="84538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86382" g_stop="86342" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86341" i_stop="85877" i_length="465">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.292" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85876" g_stop="85752" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="164" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85751" i_stop="85128" i_length="624">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.909" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85127" g_stop="84857" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="434" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="465"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E227269" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227269" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86382" e_stop="86342"/>
          <exon e_start="85876" e_stop="85752"/>
          <exon e_start="85127" e_stop="84857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTCGTCCATCAATTCAGATATTTTCTGAATTCAAAAGGTAATAACTGTTCTAGCCCCAAAAAAGAAACATGATTTCTTGAATTTTTTGCTCTTAAACGATGAAGAACTGTTATTTCATTTTCTTTTATAGAAGCTAGATATTTCATTTTTGCTCAAATTATAAGATTCTTGATATAGTGATACAAAAGTAGTTCTATTGCTCTTCTGTGTATTGTTTTTCTCCATTCCTTCCTGAAGTCAACCCAACCTTAAAATGTTTCTAACTTTTCGTAAAATTTATGCTCTACCTAGTGAATCTCATTTTTTGTTTATCTTTAAAAATTGATTTCACAAGTCCACCCTAAAGGGGTGGTCTCATTAAAGAAATGCTCTTTCACTGACCTTTTTCTGAAGAAGAAACCAGAGTATGTTTTTCTTCTGGTGCTAAGCAATGTTGCCAACCTTGTGCTTGGAATAATAAGCTTACTGCAACCACATGAAAGAACAACTTTGGCCATTTCAGGTTTTTTCGAGTTGTGCATGCCCCTATATTCCTCCGACACTTCGCATCAGATAGAAGACATATGAAGGATTCTGCTGGAAACTGGACTGCAGACCCGCCATCATATGAAGCTATTGTTGCTGAAGGTAAATGCAGGAAATAAAAGTTTGCAAGATTATGCTTTTGTCATTTGTTGGTACATTTGGTATATAAAGATAACTTTGTTCCTTCGATTAATATTTTTATCCCGTAACTACTCAAATGCCGTCTCTAATTTGATTATTCTTTTGTTATTTTTGCCAAAGTTCATCAATTTCATGATAAATATCTCGATAAGGAATGACATTTTTGCTTGATAGTCAATTAGTTTGCTCTATATAACCTTTTGATTTGTACACTTAAACAAATTTAGAGGTGGATATCGGTGCATCAAAAATTGAAATACGTGGTTGTATGCCATACCAAACTGACTCGAAGTTCGAATCTCCCCTGCTGGTTTTATTTCCAATTATCTGATCTCATTTTATGTAGTGTCACTTTTCATAGTTAACTTATGGAATAGAACATATAGGAACCAGTAGAACTAAGCCTTTTGAATATATTTTCATTCGTTAAAATTGAATCGAGGAGCACATTTGCATTACCTAATGATATCTGATAGGTGTTTTGTATGATTTTGGGTCATTTGGTACAATTAGTGAGAAAATATGAAACCCTCTCGCTTGCTCTAGTTACGATTTTTGTTTTCATTCTGCCTTTTGCTTGTACAGATGGAGCTGTACACAACCTGAACGAGTACATTACAGTCTCTCCCGATGATGTAGTGAAGAATGTGGAAGCTGATACCGTCAATGTTGTTCTCTCCGAGAAACTTGGTGTAGTAATTGGTGAAGATGATTTGTTGGGATTTTTCTCTTTGATTTCCTGATGAGAGTTGAGAAAAAACTTGCTAGCTTGAAAGATGAAATGATGATCTTGGATTTTTACATGTAAAAAGAAAAAGAAAGTGTCTTGTGAGAGTTTTTGCAAATGGAATGGAAA</genome_strand>
        <mrna_strand>AGCATTCGTCCATCAATTCAGATATTTTCTGAATTCAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTCGAGTTGTGCATGCCCCTATATTCCTCCGACACTTCGCATCAGATAGAAGACATATGAAGGATTCTGCTGGAAACTGGACTGCAGACCCGCCATCATATGAAGCTATTGTTGCTG-A-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GGAGCTGTACACAACCTGAACGAGTACATTACAGTCTCTCCCGATGATGTAGTGAAGAATGTGGAAGCTGATACCGTCAATGTTGTTCTCTCCGAGAAACTTGGTGTAGTAATTGGTGAAGATGATTTGTTGGGATTTTTCTCTTTGATTTCCTGATGAGAGTTGAGAAAAAACTTGCTAGCTTGAAAGATGAAATGATGATCTTGGATTTTTACATGTAAAAAGAAAAAGAAAGTGTCTTGTGAGAGTTTTTGCAAATGGAATGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E209587" ref_strand="+" ref_description="SGN-E209587 [cLEC-54-I9]">
      <seq>aaaaatgtcttcaaatttggaattggaagtgaggtcttcagctacagttccttctctgcaagttccaacctttcatcataccccttattattgtgaggaaaacatctacctgctatgcaaaaagctatgtgatgacggactggcagatcctaatggttctgatctgtttgttattttcatttccaatgagaagaagcagattcctctgtggcatcagaaggctagccagcgagcagagggagttattctgtgggactatcatgtcatctgtgtacagaagaagagaaatgagaactcttcgtcactagtgtgggatttagattcaagtcttccgtttccatcatctcttggcacttatgtcgctgacagcattcgtccatcaattcagatattttctgaattcaaaaggttttttcgagttgtgcatgcccctatattcctccgacacttcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="90402" stop="85531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90102" g_stop="90010" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90009" i_stop="87341" i_length="2669">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87340" g_stop="87235" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="199" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87234" i_stop="86673" i_length="562">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86672" g_stop="86595" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="277" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86594" i_stop="86473" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86472" g_stop="86342" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="408" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86341" i_stop="85877" i_length="465">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.292" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85876" g_stop="85831" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="454" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E209587" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90102" e_stop="90010"/>
          <exon e_start="87340" e_stop="87235"/>
          <exon e_start="86672" e_stop="86595"/>
          <exon e_start="86472" e_stop="86342"/>
          <exon e_start="85876" e_stop="85831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGTCTTCAAATTTGGAATTGGAAGTGAGGTCTTCAGCTACAGTTCCTTCTCTGCAAGTTCCAACCTTTCATCATACCCCTTATTATTGGTACATTCTCTCTCTCTCTCTCTCTGTGCTTTTTTGGGGGTGGAGGGGTATGTGTGTGTATAGATTCTTGAATGATAGACATAGCTGATGATGATTACTGTTTGTTTATGAAATTTGATGCATAATTGAGGATACCCGTTTCATTTGAAGACCTAATTAAGTTAGAATTGGTACTCTGTGTGTGTGTGTGTTTGCCTTTTTAAGGGGTGGGGCGTGTAAAAATGCATTCTTGAAATACAGATACAGCTGGTGATTACTGTTGTTTGGGGTGGGGTGGGGGGAGGTGGGGGTGTGTAAAAATGCATTCTTGAAAATACAGACATTGCTGGTGATTGGGCGGTGGGGGTGGGGCCGTGGGGGTGTGTAAAAATGCGTTCTTGAAATACAGACACAACTGGTAATTATTGTCGTTTGGGAGGGAGGTGGGTGGTGCTGTTTAAAAATGCGTTCTTGAAATATAGACATAGCTGGTGATTACTGATGTGTAACACCAGTACATTTGGAATTGGTAGTCAGTCCTATTTCCGGTAGGGGCAGTTGTCAATTGAATCAGATTTTGACCATTATTTTGATGTATGTAATAGTGCGAAAAGTAGAGCCAGCTCCAAGTTGTTCCGTTGAGTTTCTCGACCCTTTGGCTGAGGATGAGTCAGTTCTATTTCTCGATGTGGCAGGGAAGGGATATTTGTTTTGGGGTGCGGATGTGTAAATGCATTCTTGAAATACAGACATAGCTGGTGACTACTGTTATTTGGAGAGAGGTGTGGGGGAGGAGGTGGGACATAGTTGGTGATTACTGTTTGATTATGAAATCTGATGTACAAATGCTGATACCCTTTTCGTTTAAAGACATAATTTAAGCAAATTCTACAGCTGACCAGTTTTAGATCCACAATCACTACAACATACCGTATGAAATCCCACAAGTGGGGTCTAGGGAGGATAGAGTGTACCAGTCCTTACTCCTACCTCGTGTAGGTAGAGATGTTGCTTTTGAAAGACCCTCTGCTCAAGTGTAGCAATTCAAACTATTTATGGAAAGAAAAAAAGCTATAGGGAAGAAAACATGGCAACTAAAAAGGAAAGAAGTGCAGAGCATACAAGAAAAGAACAGTAACAACAATAGGATAGTGCGATAAGCAAAACACAATAAACAACTGTTGATGATAGATATCAAAAGCAAGCAACTACAAGCTTACAATTAATACTACAATAGACACCGCCAAGCCTAAACCTGTCGAAAAGCAAGACAATGCTCCACAACATACTCTTTTGTTATGTAGTATGAAAATATACATGAAATTTGGTGCAGGAAAGATTGTACGGGCGCCATTTTGTACAAAAAATGTTTGTGGAGTTTGTAGTTGAGCCAAATTTTTTTTGGTAAATGTCAATTAATGAAAGGATTTAGTCTTCGTTTGCTTCAGTAAGGTGTTACTTTGGTAGGCTGAACTGATTTAGCTGATGGCTTTTGTTCGGGGAAAGGGAGAGCTTTATTAAGTAATTTCATGATTTTTACAAATATCTGGTAATTTTGAACTGAACTTATCTAATGAGAATTCAAGATATGAATTTGGAACTTGTTAATTGTTTATTTGGTAAAAGCAATACTGAATGAGTAAAGAGAAAAAGAACTTGGCAATCTATGATTCATAGTATTTTTTTCCTTATTGATCTTTTTGAATTCCATATTCGAAGTTGCGATCAGATCTATAACAAAAAGAATCAGTTCAATATATTTCGTATGTATTCATAGGTAATATATTGGATTTGTATCAAATTTCGGATCAATCTATGTTGAGTGATTGCCTTCATTATGTAGTTGCTACCAAGTACCACTATTTTGGTTTTGGATCTTCAAATCCTTCGCGTAGGAGATCCAAACCCATTTTTTAATCCTTTGAGAAAAATATTCATTCTCTTCCTAAAAGTAGGACGTAGAAGCAACAAAGATTTTTTTTTCTATTCATCCTTGACCTCACTCAAGAATTGTTTTTATCCAATCCGCAGGAATTGATAGAAAAGGCAAATCATGTATAATACACCGGATCCGGCTCAGTTATTAATAGAGTGAATAGATATTGAAAACTTTCTTCTGATTCAAAATCATAGTGTAACGTGTATCCTCCCCTGTAACAAAAAATTGATTTTTGTTCAAGAATGAAATCTTATTGGAACTATCCACATCTAGTTCATCCTTTGGAACCATATCACATCCTGGAAATGATGAAATAGGATGATTGAGACGGTATTTTGTAAATATGTAATTATCTTGAATATATTAACCATTTCTTTATTTTGGGATCGCCTGGAAGGGACAAAAGAAAGATCTTGTTGTTTCTTTAACTTGGAGTATCTCTATGAGCATATTCCTGCAGAAATGCTTCGCCTGTGACCTGTCCTAAAGATAAATGTTCATAAAGAAAAGGGAACTTTTGAAATGAATCTATTTATGTAGAATTATTCAACTTAAGTACTTCCCTTTTCAAATTTGACATGTCTGTTTTTATTTCCATTCACATTAAGCTTGCTTACTGAATATATAGAGGGTTCATATATTTGACTCGGGTTGATCTTGATTTGAGGCATAGTTGATTGATTGAGAAAAATTACTTGCACTAACAATAAGTATTCTTCTGTTTGCTTTCTGTATTTACTTTCTATTACAGTGAGGAAAACATCTACCTGCTATGCAAAAAGCTATGTGATGACGGACTGGCAGATCCTAATGGTTCTGATCTGTTTGTTATTTTCATTTCCAATGAGAAGAAGCAGGCAACTACTCTTTGCTCTTCCTTTGGTTACTGTCTTAAGAAGTTCATTCATTGCATTGATACTTCATCTCAATGAAAATGATAGTAGTATAATATCTGTTCCTCTACTAGTAATGGTAATGCCGTAATGTATTGCGTTAAACTAACAAATGGTTAGATGGATAACAAAATAATGTGAACTGCAAGCCTTTGTTTGCAAACGGGATGTACTAACGTTTAGAACTTAATCTTTCAAATTTTGTTTACCATTTGATAATTCTTTGTAATGCATTAATCAGTTCAGTTTTATCTCCCTGTCCCCAATACAGCAAAGTAAAAGGATGAAGGGAAGTTCATGTTTGAATGGATCTGAAAATGGTCCAGGACACTTAAATAAGTTAAAGATAAATTGGACGTGAACAGTCTTCAAAACTAAATCGATTCAATACTATGAGTCCGTTTCTAGTGTATAATGATTTTCTAACTTAGTTGTTTGAATAAGGAGAGCGACAGAATGGCTGACAGTTAAGTTGTACCTAGCATAATGTTTTTGGGGATGTTAATTTATAATTATATGCTTTCAGATTCCTCTGTGGCATCAGAAGGCTAGCCAGCGAGCAGAGGGAGTTATTCTGTGGGACTATCATGTCATCTGTGTACAGGTTAGATTAACCTACTGTTGTCTAGTATAAACTGAAAATGGTTAACTATATGGTTTTTATTTTTCTCTACTATAGCTATTGGGATTTCATGTCCTTGAGAAAATCTGTTTGGATGCTTGCAGAAGAAGAGAAATGAGAACTCTTCGTCACTAGTGTGGGATTTAGATTCAAGTCTTCCGTTTCCATCATCTCTTGGCACTTATGTCGCTGACAGCATTCGTCCATCAATTCAGATATTTTCTGAATTCAAAAGGTAATAACTGTTCTAGCCCCAAAAAAGAAACATGATTTCTTGAATTTTTTGCTCTTAAACGATGAAGAACTGTTATTTCATTTTCTTTTATAGAAGCTAGATATTTCATTTTTGCTCAAATTATAAGATTCTTGATATAGTGATACAAAAGTAGTTCTATTGCTCTTCTGTGTATTGTTTTTCTCCATTCCTTCCTGAAGTCAACCCAACCTTAAAATGTTTCTAACTTTTCGTAAAATTTATGCTCTACCTAGTGAATCTCATTTTTTGTTTATCTTTAAAAATTGATTTCACAAGTCCACCCTAAAGGGGTGGTCTCATTAAAGAAATGCTCTTTCACTGACCTTTTTCTGAAGAAGAAACCAGAGTATGTTTTTCTTCTGGTGCTAAGCAATGTTGCCAACCTTGTGCTTGGAATAATAAGCTTACTGCAACCACATGAAAGAACAACTTTGGCCATTTCAGGTTTTTTCGAGTTGTGCATGCCCCTATATTCCTCCGACACTTCGCA</genome_strand>
        <mrna_strand>AAAAATGTCTTCAAATTTGGAATTGGAAGTGAGGTCTTCAGCTACAGTTCCTTCTCTGCAAGTTCCAACCTTTCATCATACCCCTTATTATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAAAACATCTACCTGCTATGCAAAAAGCTATGTGATGACGGACTGGCAGATCCTAATGGTTCTGATCTGTTTGTTATTTTCATTTCCAATGAGAAGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCTGTGGCATCAGAAGGCTAGCCAGCGAGCAGAGGGAGTTATTCTGTGGGACTATCATGTCATCTGTGTACAG..........................................................................................................................AAGAAGAGAAATGAGAACTCTTCGTCACTAGTGTGGGATTTAGATTCAAGTCTTCCGTTTCCATCATCTCTTGGCACTTATGTCGCTGACAGCATTCGTCCATCAATTCAGATATTTTCTGAATTCAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTCGAGTTGTGCATGCCCCTATATTCCTCCGACACTTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="96963" stop="97847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97263" g_stop="97547" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97263" e_stop="97547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTC-TTCTTTCGTGCTATTACTTGGGTACAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCGGATGGTTAGACCTAGAGCAACGATTGCGCCAACACCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="98642" stop="97325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98343" g_stop="97625" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98343" e_stop="97625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCTGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATTTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTAT-GGGCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCGGATTGATCATCTCTGGGGTAGGTTGGGATGGAAATTCCTCATTTTGCACGTGTTCATTCTCCCCTTCCTCACCCTCTCT-TACCACTTCCTCAGTTGGTGGAGGAGTCACCGCCCTAGTATCAGACGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="98640" stop="97378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98340" g_stop="97678" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98340" e_stop="97678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCTGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATTTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTAT-GGGCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCGGATTGATCATCTCTGGGGTAGGTTGGGATGGAAATTCCTCATTTTGCACGTGTTCATTCTCCCCTTCCTCACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E245958" ref_strand="+" ref_description="SGN-E245958 [cLEF-51-E16]">
      <seq>caggctccggaggtacaatatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatatattttcagtaagttcttgaaattgaaacctccagtcttcaaaggtgcggaatcggaggatgcttacgattttctggtggactgtcatgagctactacacaagaagggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaagcaccacctatgacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="97578" stop="98463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97826" g_stop="98163" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E245958" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97826" e_stop="98163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACATTTCCACGTCTGACTACT-GGCCCATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAAATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAATGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACGGAGGCACCACCTATGACTTGG</genome_strand>
        <mrna_strand>CAGGCTCCGGAGGTACAATATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCAT-ATATTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAAGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTGGACTGTCATGAGCTACTACACAAGAAGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAAGCACCACCTATGACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="99280" stop="97891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98980" g_stop="98191" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98980" e_stop="98191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTGCCATGTTGTGATGTAGTGGCTCATGTTTTCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCTGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="99204" stop="97907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98904" g_stop="98207" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98904" e_stop="98207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTGCCATGTTGTGATGTAGTGGCTCATGTTTTCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="97947" stop="99955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98247" g_stop="98419" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98420" i_stop="99163" i_length="744">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99164" g_stop="99691" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98247" e_stop="98419"/>
          <exon e_start="99164" e_stop="99691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACTGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGTCGAGGTGATGGGAAAACATGAGCCACTACATCACAACATGGCAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCATATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTTTGGGTATGACTTTGCTTTCTCCACAATTTGCGATCTTGGATTGTAATGCTAAAGCGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTAAGTCGGTTTCGGTGGTTCGTGAGTTTCTGGATGTGTTCCTTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGATTTTTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTGTTGAGGAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGAGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAGATCG--G-CAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="99360" stop="97997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99060" g_stop="98297" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99060" e_stop="98297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATATGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTGCCATGTTGTGATGTAGTGGCTCATGTTTTCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAATCCGCTCTTG-TGGACTGAAACAAAGTTGAGTGGCATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="99278" stop="98145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98978" g_stop="98445" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98978" e_stop="98445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTGCCATGTTGTGATGTAGTGGCTCATGTTTTCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="99364" stop="98206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99064" g_stop="98506" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99064" e_stop="98506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATATGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTGCCATGTTGTGATGTAGTGGCTCATGTTTTCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E355026" ref_strand="+" ref_description="SGN-E355026 [cTOS-19-F16]">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="99747" stop="98605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99447" g_stop="98905" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E355026" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99447" e_stop="98905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCCAGAAACTCACGAACCACCGAAACCGACTTAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGCTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCAAAGTCATACCCAAAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATATGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="99974" stop="98613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99674" g_stop="98913" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99674" e_stop="98913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTCCTCAACAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAAAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGAACCACCGAAACCGACTTAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGCTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCAAAGTCATACCCAAAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATATGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="99571" stop="98645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99271" g_stop="98941" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99271" e_stop="98941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGCTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCAAAGTCATACCCAAAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATATGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="99974" stop="98714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99674" g_stop="99014" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99674" e_stop="99014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTCCTCAACAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAAAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGAACCACCGAAACCGACTTAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGCTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCAAAGTCATACCCAAAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATATGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="100043" stop="98785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99743" g_stop="99085" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99743" e_stop="99085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTCCTCAACAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAAAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGAACCACCGAAACCGACTTAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGCTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCAAAGTCATACCCAAAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="100492" stop="99214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100192" g_stop="99513" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100192" e_stop="99513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATTTAGCCAAAACTCACACTTGGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTACTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGCAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTCCTCAACAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="100563" stop="99251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100263" g_stop="99551" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100263" e_stop="99551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGAGAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATTTAGCCAAAACTCACACTTGGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTACTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGCAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTCCTCAACAACTC-TTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="100563" stop="99368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100263" g_stop="99668" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100263" e_stop="99668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGAGAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATTTAGCCAAAACTCACACTTGGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTACTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGCAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="100563" stop="99438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100263" g_stop="99738" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100263" e_stop="99738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGAGAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATTTAGCCAAAACTCACACTTGGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTACTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGCAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="100492" stop="99534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100192" g_stop="99834" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100192" e_stop="99834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATTTAGCCAAAACTCACACTTGGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTACTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGCAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="102044" stop="101267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101744" g_stop="101568" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101744" e_stop="101568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTCGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACTAAATTCTATCACACACGCACGAAGCATATCCTCCAATACTTGAATTGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E349726" ref_strand="-" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>ttatgttcattagattgagtatataacatctttcaagattcattgtctttatttctcttgtgtcggtacgtgacattccgctccntcatattcattaatcttcttgtgtcggtacgtgatactctgatcccctaaatctacgtgtcggaacgtgacactccgatcccctaaatctacgtgtcggttcgtgacacctgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaatctatgtgttggttcgtgacacctgatcccttaatctacgtgtcggtttgtgacacccgatcccctaattctacgtgtcagttcgtgacacccgatcccctaatctcattctatcaattcatcaagccttctcccttaccaaggcatcatcaatctcattactttagttcatcaagccttctcccttaccaaggcatcatcattaaaaagagattaggtttttacaagatttgggattcaataacttcatcatgcttatataataacaattatatagttacattcatgcaagcatacaattaagcacatagcagggtttacaatattatcaatacatatcattctctattaagagtttactacgaatatcgtaagagaaacaataacctacctccaccgaagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="104016" stop="95547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103802" g_stop="103485" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103484" i_stop="103381" i_length="104">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103380" g_stop="102981" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="717" r_length="401" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E349726" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103802" e_stop="103485"/>
          <exon e_start="103380" e_stop="102981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTCGGTTCGTGACAC-CCGATCCCCTAAATCTATGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCATGACACCCGATCCCTTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCTCCTAAATCTACGTGTCGGTTCGTGACACTCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGTTCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCAATCCCCTAATCTCCTTCCATCAATTCATCAAACCTTCTTTCTTACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCATCATCATTAAAAAGAGATTAGGTTTTTATCAAGATTTGGGATTCAATAACTTCATCATGCTTAATATAATCACAATTATATAATCACGTTCATGCATGCATACAATTAAGCACATAGCAGGGTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAA-A--GCATGA-AAACCATAACCTACCTCCACCGAAGAATT</genome_strand>
        <mrna_strand>TTATGTTCATTAGATTGAGTATA-TAACATCTTTCAAGATTCATTGTCTTTATTTCTCTTGTGTCGGTACGTGACATTCCGCTCCNTC-ATATTCATTAATCTTCTTGTGTCGGTACGTGATACTCTGATCCCCTAAATCTACGTGTCGGAACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCTGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAA-TCTAT........................................................................................................GTGTTGGTTCGTGACACCTGATCCCTTAA-TCTACGTGTCGGTTTGTGACACCCGATCCCCTAATTCTACGTGTCAGTTCGTGACACCCGATCCCCTAATCTCATTCTATCAATTCATCAAGCCTTCTCCCTTACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCATCATCATTAAAAAGAGATTAGGTTTTTA-CAAGATTTGGGATTCAATAACTTCATCATGCTT-ATATAATAACAATTATATAGTTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCTCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACAATAACCTACCTCCACCGAAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="95547" stop="103680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102981" g_stop="103381" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102981" e_stop="103381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCT-TTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGTTTGATGAATTGATGGAAGGAGATTAGGGGATTGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="104273" stop="103266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103973" g_stop="103636" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103973" e_stop="103636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCGATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="103346" stop="104184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103646" g_stop="103884" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103646" e_stop="103884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RrJ7Jo/sgn_ests_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-VyrP4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="103347" stop="104424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103647" g_stop="104124" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103647" e_stop="104124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTA-CCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>120</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1824" PGL_stop="4984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1824" e_stop="1845"/>
            <exon e_start="2520" e_stop="2612"/>
            <exon e_start="2763" e_stop="2848"/>
            <exon e_start="4914" e_stop="4984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.910" e_score="0.968"/>
          <exon-intron don_prob="0.975" acc_prob="0.643" e_score="0.977"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1824" e_stop="1845" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1846" i_stop="2519" i_length="674"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="2520" e_stop="2612" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.910">
            <gDNA_intron_boundary i_start="2613" i_stop="2762" i_length="150"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="2763" e_stop="2848" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.643">
            <gDNA_intron_boundary i_start="2849" i_stop="4913" i_length="2065"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="4914" e_stop="4984" e_length="71"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1824" stop="1845"/>
              <exon start="2520" stop="2612"/>
              <exon start="2763" stop="2848"/>
              <exon start="4914" stop="4984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATGTCTTGAAAAAGTTGG : GATGGGCTACAAGTTTATCTGCTGGTGAATCAGACTGGACTAACGAGTTCTCTTTCTTTAAAGTGGCGATTGATTTGACTGATGCTGGTCAAG : ATCATTTTGAAGACATTATGGGTCTCCTATTCAAATATATTCATCTTCTACAACAAGCTGGTGCGTCCAAATGGATATTTGAAGAG : CTCTCAGCTATTTGTGAGACTGCCTTCCATTATCAAGACAAGATTCGACCAAGTGATTATGTGGTTAATGT</gDNA_template>
            <first_frame> F  Y  V  L  K  K  L   : G  W  A  T  S  L  S  A  G  E  S  D  W  T  N  E  F  S  F  F  K  V  A  I  D  L  T  D  A  G  Q   : D  H  F  E  D  I  M  G  L  L  F  K  Y  I  H  L  L  Q  Q  A  G  A  S  K  W  I  F  E  E  :  L  S  A  I  C  E  T  A  F  H  Y  Q  D  K  I  R  P  S  D  Y  V  V  N   </first_frame>
            <second_frame>  F  M  S  *  K  S  W  :  D  G  L  Q  V  Y  L  L  V  N  Q  T  G  L  T  S  S  L  S  L  K  W  R  L  I  *  L  M  L  V  K  :  I  I  L  K  T  L  W  V  S  Y  S  N  I  F  I  F  Y  N  K  L  V  R  P  N  G  Y  L  K  S :   S  Q  L  F  V  R  L  P  S  I  I  K  T  R  F  D  Q  V  I  M  W  L  M  </second_frame>
            <third_frame>   L  C  L  E  K  V  G :   M  G  Y  K  F  I  C  W  *  I  R  L  D  *  R  V  L  F  L  *  S  G  D  *  F  D  *  C  W  S  R :   S  F  *  R  H  Y  G  S  P  I  Q  I  Y  S  S  S  T  T  S  W  C  V  Q  M  D  I  *  R   : A  L  S  Y  L  *  D  C  L  P  L  S  R  Q  D  S  T  K  *  L  C  G  *  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1824" stop="1845"/>
                    <exon start="2520" stop="2612"/>
                    <exon start="2763" stop="2848"/>
                    <exon start="4914" stop="4982"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYVLKKLGWATSLSAGESDWTNEFSFFKVAIDLTDAGQDHFEDIMGLLFKYIHLLQQAGASKWIFEELSAICETAFHYQDKIRPSDYVVN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6881" PGL_stop="17070"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6881" e_stop="6966"/>
            <exon e_start="7080" e_stop="7175"/>
            <exon e_start="7440" e_stop="7629"/>
            <exon e_start="7827" e_stop="7888"/>
            <exon e_start="8415" e_stop="8519"/>
            <exon e_start="10291" e_stop="10492"/>
            <exon e_start="10568" e_stop="10776"/>
            <exon e_start="12755" e_stop="12879"/>
            <exon e_start="12980" e_stop="13031"/>
            <exon e_start="13119" e_stop="13205"/>
            <exon e_start="14697" e_stop="14819"/>
            <exon e_start="15460" e_stop="16255"/>
            <exon e_start="17032" e_stop="17070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.421" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.721" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.553" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.641" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="0.998"/>
          <exon-only e_score="0.795"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6881" e_stop="6966" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="6967" i_stop="7079" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7080" e_stop="7175" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.933" acc_prob="0.421">
            <gDNA_intron_boundary i_start="7176" i_stop="7439" i_length="264"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7440" e_stop="7629" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.790">
            <gDNA_intron_boundary i_start="7630" i_stop="7826" i_length="197"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7827" e_stop="7888" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="7889" i_stop="8414" i_length="526"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8415" e_stop="8519" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.971">
            <gDNA_intron_boundary i_start="8520" i_stop="10290" i_length="1771"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="10291" e_stop="10492" e_length="202"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.990">
            <gDNA_intron_boundary i_start="10493" i_stop="10567" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="10568" e_stop="10776" e_length="209"/>
          </exon>
          <intron i_serial="7" don_prob="0.973" acc_prob="0.721">
            <gDNA_intron_boundary i_start="10777" i_stop="12754" i_length="1978"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="12755" e_stop="12879" e_length="125"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.553">
            <gDNA_intron_boundary i_start="12880" i_stop="12979" i_length="100"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="12980" e_stop="13031" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.988" acc_prob="0.883">
            <gDNA_intron_boundary i_start="13032" i_stop="13118" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="13119" e_stop="13205" e_length="87"/>
          </exon>
          <intron i_serial="10" don_prob="0.988" acc_prob="0.972">
            <gDNA_intron_boundary i_start="13206" i_stop="14696" i_length="1491"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="14697" e_stop="14819" e_length="123"/>
          </exon>
          <intron i_serial="11" don_prob="0.989" acc_prob="0.641">
            <gDNA_intron_boundary i_start="14820" i_stop="15459" i_length="640"/>
          </intron>
          <exon e_serial="12" e_score="0.998">
            <gDNA_exon_boundary e_start="15460" e_stop="16255" e_length="796"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16256" i_stop="17031" i_length="776"/>
          </intron>
          <exon e_serial="13" e_score="0.795">
            <gDNA_exon_boundary e_start="17032" e_stop="17070" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6881" stop="6966"/>
              <exon start="7080" stop="7175"/>
              <exon start="7440" stop="7629"/>
              <exon start="7827" stop="7888"/>
              <exon start="8415" stop="8519"/>
              <exon start="10291" stop="10492"/>
              <exon start="10568" stop="10677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10296" stop="10492"/>
              <exon start="10568" stop="10776"/>
              <exon start="12755" stop="12860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10297" stop="10492"/>
              <exon start="10568" stop="10776"/>
              <exon start="12755" stop="12879"/>
              <exon start="12980" stop="13031"/>
              <exon start="13119" stop="13205"/>
              <exon start="14697" stop="14723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10297" stop="10492"/>
              <exon start="10568" stop="10776"/>
              <exon start="12755" stop="12873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10584" stop="10776"/>
              <exon start="12755" stop="12879"/>
              <exon start="12980" stop="13031"/>
              <exon start="13119" stop="13205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10605" stop="10776"/>
              <exon start="12755" stop="12879"/>
              <exon start="12980" stop="13031"/>
              <exon start="13119" stop="13205"/>
              <exon start="14697" stop="14819"/>
              <exon start="15460" stop="15795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12760" stop="12879"/>
              <exon start="12980" stop="13031"/>
              <exon start="13119" stop="13205"/>
              <exon start="14697" stop="14819"/>
              <exon start="15460" stop="15823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12823" stop="12879"/>
              <exon start="12980" stop="13031"/>
              <exon start="13119" stop="13205"/>
              <exon start="14697" stop="14819"/>
              <exon start="15460" stop="15530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14781" stop="14819"/>
              <exon start="15460" stop="16034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15573" stop="16129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15573" stop="16101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15573" stop="16068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15812" stop="16255"/>
              <exon start="17032" stop="17070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208264" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAGTTTGAGGGTAATACTAGCATGACTGAGCCATGGTATGGAACTGCATATTCTATAGAGAAAGTTGGTGGTGACAGTATCAAG : CAATGGATGGAGCATGCTCCCAGTGAAGAGCTGCATCTCCCTGCTCCCAATGTGTTCATACCAACTGATTTATCACTTAAGCCCGTCTTCGAGAAG : ACAAAAGTTCCCATACTTCTGCGGAAGTCACCTTATTCAAGGTTATGGTATAAGCCCGATACAGCATTTTCATCTCCAAAAGCCTATGTTATGATCGATTTCAGTTGCCCATACTGTGGACATTCTCCAGAAGCTGAGGTTCTTACTGAGATATTTACACGTCTATTGATGGATTACTTGAATGAATATG : CTTATAATGCACAAGTTGCTGGTCTTTATTATGATATAAGCAAAACAAACAGTGGTTTTCAG : TTGACATTGTTTGGATATAATGACAAGTTGAGAGTCTTACTGGAAGCAGTCATTGAAAAAGTTGCGAAATTTGAAGTAAAACCAGACAGATTCTCTGTGGTCAAG : GAATTGGTGACAAAGCAATATCAGAATTTCAAGTTCCAACAGCCATATCAACAGGTTATGTATTACTGCTCATTACTGCTAAAAGACAACATATGGCCTTGGAATGAAGAACTTGAAGTGCTTCCACATCTTAAAGTTGATGATCTGGTTAAGTTCTATCCGCTTTTGATGGCTAGGTCCTTTATGGAGTGCTATGTAGCAG : GAAATGTTGAACAAGCTGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAG : GTGCATCAGGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCATGCAGAG : GAGCGACTCTGGTGTTCACGGGGTGCAGTTTATCGTTCAGTCAACTGCAAAG : GATCCCAAATACATTGACACAAGAGTGGAGTTATTTATGAAGATGTTTGAGAGCAAGCTTTATGAGATGACTAGTGATGAATTCAAG : AATAATGTCAATGCACTTATTGATATGAAGCTTGAGAAACACAAGAATTTACGGGAGGAATCTCGGTTTTACTGGAGGGAGATCTCAGATGGGACCCTCAAGTTTGATAGACGAGACCGTGAG : ATTGTCGCGTTAAAGCAACTGACTCAAAAGGAGCTGACAGATTTCTTCGATGAATATATTAAAGTCGGTGTTCCTCGGAAGAAGGCCTTAAGTGTCAGAGTCTATGGAAGCTCACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCAAGATACCTCTCTCGTATTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTAGGCGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTTGATGGGATAAATAAACTACAATGTACTTCAGTTTTTTTTTTTTTTGTTACTTAAAAATCTTCTTGATGTTACTAGTGTATTAGGCAAACTTATCAGGTGAATCTGTCCAAATTTTTAATGGATAGAATTATTTGATATTTGTGTTGGCGGTAGGTTGTCGGTTTTTGGAGAATTAGTTGGAAGTGTATAAGTTGGTTTGAGCACTACAGTTATTAAAAAAAAGATGTTTA : GAGATTAACAAAAAAGAAAAAGAAAACAAGATGACTAGG</gDNA_template>
            <first_frame> Q  S  L  R  V  I  L  A  *  L  S  H  G  M  E  L  H  I  L  *  R  K  L  V  V  T  V  S  S :   N  G  W  S  M  L  P  V  K  S  C  I  S  L  L  P  M  C  S  Y  Q  L  I  Y  H  L  S  P  S  S  R  R :   Q  K  F  P  Y  F  C  G  S  H  L  I  Q  G  Y  G  I  S  P  I  Q  H  F  H  L  Q  K  P  M  L  *  S  I  S  V  A  H  T  V  D  I  L  Q  K  L  R  F  L  L  R  Y  L  H  V  Y  *  W  I  T  *  M  N  M  :  L  I  M  H  K  L  L  V  F  I  M  I  *  A  K  Q  T  V  V  F  S :   *  H  C  L  D  I  M  T  S  *  E  S  Y  W  K  Q  S  L  K  K  L  R  N  L  K  *  N  Q  T  D  S  L  W  S  R :   N  W  *  Q  S  N  I  R  I  S  S  S  N  S  H  I  N  R  L  C  I  T  A  H  Y  C  *  K  T  T  Y  G  L  G  M  K  N  L  K  C  F  H  I  L  K  L  M  I  W  L  S  S  I  R  F  *  W  L  G  P  L  W  S  A  M  *  Q  :  E  M  L  N  K  L  K  Q  S  P  *  Y  S  L  L  K  M  C  S  S  R  V  H  S  Q  Y  Q  S  L  Y  L  H  L  S  I  *  Q  T  E  W  S  I  L  K  E  V  *  I  M  S  T  L  Q  R  D  *  I  Q  V  M  K  I  Q  L  L  F  I  I  F  R :   C  I  R  M  T  L  C  *  M  *  N  F  S  F  L  L  S  *  Q  S  S  Q  P  S  T  S  L  D  Q  S  S  N  L  V  I  S  L  C  S  C  R   : G  A  T  L  V  F  T  G  C  S  L  S  F  S  Q  L  Q  R :   I  P  N  T  L  T  Q  E  W  S  Y  L  *  R  C  L  R  A  S  F  M  R  *  L  V  M  N  S  R :   I  M  S  M  H  L  L  I  *  S  L  R  N  T  R  I  Y  G  R  N  L  G  F  T  G  G  R  S  Q  M  G  P  S  S  L  I  D  E  T  V  R :   L  S  R  *  S  N  *  L  K  R  S  *  Q  I  S  S  M  N  I  L  K  S  V  F  L  G  R  R  P  *  V  S  E  S  M  E  A  H  I  L  L  N  S  K  H  I  R  M  S  R  W  N  Q  M  Q  F  R  *  K  K  Y  L  A  F  D  D  L  G  L  F  I  V  H  S  K  E  A  L  V  M  *  D  C  K  R  S  H  S  S  S  R  S  P  P  M  Q  L  I  C  C  V  S  E  S  I  T  E  A  V  D  L  Q  D  T  S  L  V  F  S  C  V  N  *  S  V  V  R  G  L  V  V  G  V  *  V  *  L  L  N  *  F  D  D  V  L  L  R  D  L  E  E  V  N  V  Y  C  D  T  N  F  C  F  D  C  *  I  *  L  I  R  R  Q  E  V  T  *  I  R  P  E  R  K  I  I  H  S  W  C  *  W  D  K  *  T  T  M  Y  F  S  F  F  F  F  C  Y  L  K  I  F  L  M  L  L  V  Y  *  A  N  L  S  G  E  S  V  Q  I  F  N  G  *  N  Y  L  I  F  V  L  A  V  G  C  R  F  L  E  N  *  L  E  V  Y  K  L  V  *  A  L  Q  L  L  K  K  R  C  L  :  E  I  N  K  K  E  K  E  N  K  M  T  R </first_frame>
            <second_frame>  K  V  *  G  *  Y  *  H  D  *  A  M  V  W  N  C  I  F  Y  R  E  S  W  W  *  Q  Y  Q   : A  M  D  G  A  C  S  Q  *  R  A  A  S  P  C  S  Q  C  V  H  T  N  *  F  I  T  *  A  R  L  R  E   : D  K  S  S  H  T  S  A  E  V  T  L  F  K  V  M  V  *  A  R  Y  S  I  F  I  S  K  S  L  C  Y  D  R  F  Q  L  P  I  L  W  T  F  S  R  S  *  G  S  Y  *  D  I  Y  T  S  I  D  G  L  L  E  *  I  C :   L  *  C  T  S  C  W  S  L  L  *  Y  K  Q  N  K  Q  W  F  S   : V  D  I  V  W  I  *  *  Q  V  E  S  L  T  G  S  S  H  *  K  S  C  E  I  *  S  K  T  R  Q  I  L  C  G  Q   : G  I  G  D  K  A  I  S  E  F  Q  V  P  T  A  I  S  T  G  Y  V  L  L  L  I  T  A  K  R  Q  H  M  A  L  E  *  R  T  *  S  A  S  T  S  *  S  *  *  S  G  *  V  L  S  A  F  D  G  *  V  L  Y  G  V  L  C  S  R :   K  C  *  T  S  *  S  R  V  H  D  T  A  Y  *  R  C  V  L  Q  G  S  T  V  N  I  K  A  S  I  C  I  S  A  S  D  K  Q  S  G  Q  S  *  K  R  C  K  L  C  L  R  C  R  G  T  K  S  K  *  *  K  F  S  S  C  S  L  Y  S   : G  A  S  G  *  L  Y  A  E  C  K  T  S  A  F  C  S  H  S  K  A  A  S  L  P  P  A  *  I  S  R  A  T  W  L  Y  H  C  A  H  A  E  :  E  R  L  W  C  S  R  G  A  V  Y  R  S  V  N  C  K   : G  S  Q  I  H  *  H  K  S  G  V  I  Y  E  D  V  *  E  Q  A  L  *  D  D  *  *  *  I  Q   : E  *  C  Q  C  T  Y  *  Y  E  A  *  E  T  Q  E  F  T  G  G  I  S  V  L  L  E  G  D  L  R  W  D  P  Q  V  *  *  T  R  P  *   : D  C  R  V  K  A  T  D  S  K  G  A  D  R  F  L  R  *  I  Y  *  S  R  C  S  S  E  E  G  L  K  C  Q  S  L  W  K  L  T  F  F  S  I  P  S  T  *  E  *  A  D  G  T  K  C  S  S  D  R  R  N  I  *  L  S  T  I  S  A  S  L  *  F  I  Q  R  R  L  W  S  C  E  I  V  R  G  R  I  A  A  R  E  A  P  Q  C  S  *  Y  V  A  L  A  S  P  L  Q  K  Q  L  I  C  K  I  P  L  S  Y  S  V  V  S  I  S  Q  L  Y  E  G  S  W  *  A  C  E  F  N  C  S  T  D  L  M  M  Y  C  L  E  I  W  K  K  *  M  Y  T  V  T  P  I  S  V  L  I  A  E  Y  N  *  S  E  D  K  K  *  H  E  L  D  L  K  G  K  L  F  I  H  G  V  D  G  I  N  K  L  Q  C  T  S  V  F  F  F  F  V  T  *  K  S  S  *  C  Y  *  C  I  R  Q  T  Y  Q  V  N  L  S  K  F  L  M  D  R  I  I  *  Y  L  C  W  R  *  V  V  G  F  W  R  I  S  W  K  C  I  S  W  F  E  H  Y  S  Y  *  K  K  D  V  * :   R  L  T  K  K  K  K  K  T  R  *  L   </second_frame>
            <third_frame>   K  F  E  G  N  T  S  M  T  E  P  W  Y  G  T  A  Y  S  I  E  K  V  G  G  D  S  I  K  :  Q  W  M  E  H  A  P  S  E  E  L  H  L  P  A  P  N  V  F  I  P  T  D  L  S  L  K  P  V  F  E  K  :  T  K  V  P  I  L  L  R  K  S  P  Y  S  R  L  W  Y  K  P  D  T  A  F  S  S  P  K  A  Y  V  M  I  D  F  S  C  P  Y  C  G  H  S  P  E  A  E  V  L  T  E  I  F  T  R  L  L  M  D  Y  L  N  E  Y   : A  Y  N  A  Q  V  A  G  L  Y  Y  D  I  S  K  T  N  S  G  F  Q  :  L  T  L  F  G  Y  N  D  K  L  R  V  L  L  E  A  V  I  E  K  V  A  K  F  E  V  K  P  D  R  F  S  V  V  K  :  E  L  V  T  K  Q  Y  Q  N  F  K  F  Q  Q  P  Y  Q  Q  V  M  Y  Y  C  S  L  L  L  K  D  N  I  W  P  W  N  E  E  L  E  V  L  P  H  L  K  V  D  D  L  V  K  F  Y  P  L  L  M  A  R  S  F  M  E  C  Y  V  A   : G  N  V  E  Q  A  E  A  E  S  M  I  Q  L  I  E  D  V  F  F  K  G  P  Q  S  I  S  K  P  L  F  A  S  Q  H  L  T  N  R  V  V  N  L  E  R  G  V  N  Y  V  Y  A  A  E  G  L  N  P  S  D  E  N  S  A  L  V  H  Y  I  Q  :  V  H  Q  D  D  F  M  L  N  V  K  L  Q  L  F  A  L  I  A  K  Q  P  A  F  H  Q  L  R  S  V  E  Q  L  G  Y  I  T  V  L  M  Q  R :   S  D  S  G  V  H  G  V  Q  F  I  V  Q  S  T  A  K  :  D  P  K  Y  I  D  T  R  V  E  L  F  M  K  M  F  E  S  K  L  Y  E  M  T  S  D  E  F  K  :  N  N  V  N  A  L  I  D  M  K  L  E  K  H  K  N  L  R  E  E  S  R  F  Y  W  R  E  I  S  D  G  T  L  K  F  D  R  R  D  R  E  :  I  V  A  L  K  Q  L  T  Q  K  E  L  T  D  F  F  D  E  Y  I  K  V  G  V  P  R  K  K  A  L  S  V  R  V  Y  G  S  S  H  S  S  Q  F  Q  A  H  K  N  E  Q  M  E  P  N  A  V  Q  I  E  E  I  F  S  F  R  R  S  R  P  L  Y  S  S  F  K  G  G  F  G  H  V  R  L  *  E  V  A  *  Q  L  E  K  P  P  N  A  V  D  M  L  R  *  R  V  H  Y  R  S  S  *  S  A  R  Y  L  S  R  I  Q  L  C  Q  L  V  S  C  T  R  A  R  G  R  R  V  S  L  I  A  Q  L  I  *  *  C  T  A  *  R  F  G  R  S  E  C  I  L  *  H  Q  F  L  F  *  L  L  N  I  I  D  Q  K  T  R  S  D  M  N  *  T  *  K  E  N  Y  S  F  M  V  L  M  G  *  I  N  Y  N  V  L  Q  F  F  F  F  L  L  L  K  N  L  L  D  V  T  S  V  L  G  K  L  I  R  *  I  C  P  N  F  *  W  I  E  L  F  D  I  C  V  G  G  R  L  S  V  F  G  E  L  V  G  S  V  *  V  G  L  S  T  T  V  I  K  K  K  M  F   : R  D  *  Q  K  R  K  R  K  Q  D  D  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6883" stop="6966"/>
                    <exon start="7080" stop="7175"/>
                    <exon start="7440" stop="7629"/>
                    <exon start="7827" stop="7888"/>
                    <exon start="8415" stop="8519"/>
                    <exon start="10291" stop="10492"/>
                    <exon start="10568" stop="10776"/>
                    <exon start="12755" stop="12879"/>
                    <exon start="12980" stop="13031"/>
                    <exon start="13119" stop="13205"/>
                    <exon start="14697" stop="14819"/>
                    <exon start="15460" stop="15711"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1584</number_coding_nucleotides>
                  <number_encoded_amino_acids>528</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFEGNTSMTEPWYGTAYSIEKVGGDSIKQWMEHAPSEELHLPAPNVFIPTDLSLKPVFEKTKVPILLRKSPYSRLWYKPDTAFSSPKAYVMIDFSCPYCGHSPEAEVLTEIFTRLLMDYLNEYAYNAQVAGLYYDISKTNSGFQLTLFGYNDKLRVLLEAVIEKVAKFEVKPDRFSVVKELVTKQYQNFKFQQPYQQVMYYCSLLLKDNIWPWNEELEVLPHLKVDDLVKFYPLLMARSFMECYVAGNVEQAEAESMIQLIEDVFFKGPQSISKPLFASQHLTNRVVNLERGVNYVYAAEGLNPSDENSALVHYIQVHQDDFMLNVKLQLFALIAKQPAFHQLRSVEQLGYITVLMQRSDSGVHGVQFIVQSTAKDPKYIDTRVELFMKMFESKLYEMTSDEFKNNVNALIDMKLEKHKNLREESRFYWREISDGTLKFDRRDREIVALKQLTQKELTDFFDEYIKVGVPRKKALSVRVYGSSHSSQFQAHKNEQMEPNAVQIEEIFSFRRSRPLYSSFKGGFGHVRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6881" e_stop="6966"/>
            <exon e_start="7080" e_stop="7175"/>
            <exon e_start="7440" e_stop="7629"/>
            <exon e_start="7827" e_stop="7888"/>
            <exon e_start="8415" e_stop="8519"/>
            <exon e_start="10291" e_stop="10492"/>
            <exon e_start="10568" e_stop="10776"/>
            <exon e_start="12755" e_stop="12879"/>
            <exon e_start="12980" e_stop="13031"/>
            <exon e_start="13119" e_stop="13205"/>
            <exon e_start="14697" e_stop="14819"/>
            <exon e_start="15460" e_stop="16335"/>
            <exon e_start="17032" e_stop="17070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.421" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.721" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.553" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.641" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="0.998"/>
          <exon-only e_score="0.590"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6881" e_stop="6966" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="6967" i_stop="7079" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7080" e_stop="7175" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.933" acc_prob="0.421">
            <gDNA_intron_boundary i_start="7176" i_stop="7439" i_length="264"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7440" e_stop="7629" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.790">
            <gDNA_intron_boundary i_start="7630" i_stop="7826" i_length="197"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7827" e_stop="7888" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="7889" i_stop="8414" i_length="526"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8415" e_stop="8519" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.971">
            <gDNA_intron_boundary i_start="8520" i_stop="10290" i_length="1771"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="10291" e_stop="10492" e_length="202"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.990">
            <gDNA_intron_boundary i_start="10493" i_stop="10567" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="10568" e_stop="10776" e_length="209"/>
          </exon>
          <intron i_serial="7" don_prob="0.973" acc_prob="0.721">
            <gDNA_intron_boundary i_start="10777" i_stop="12754" i_length="1978"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="12755" e_stop="12879" e_length="125"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.553">
            <gDNA_intron_boundary i_start="12880" i_stop="12979" i_length="100"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="12980" e_stop="13031" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.988" acc_prob="0.883">
            <gDNA_intron_boundary i_start="13032" i_stop="13118" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="13119" e_stop="13205" e_length="87"/>
          </exon>
          <intron i_serial="10" don_prob="0.988" acc_prob="0.972">
            <gDNA_intron_boundary i_start="13206" i_stop="14696" i_length="1491"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="14697" e_stop="14819" e_length="123"/>
          </exon>
          <intron i_serial="11" don_prob="0.989" acc_prob="0.641">
            <gDNA_intron_boundary i_start="14820" i_stop="15459" i_length="640"/>
          </intron>
          <exon e_serial="12" e_score="0.998">
            <gDNA_exon_boundary e_start="15460" e_stop="16335" e_length="876"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16336" i_stop="17031" i_length="696"/>
          </intron>
          <exon e_serial="13" e_score="0.590">
            <gDNA_exon_boundary e_start="17032" e_stop="17070" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6881" stop="6966"/>
              <exon start="7080" stop="7175"/>
              <exon start="7440" stop="7629"/>
              <exon start="7827" stop="7888"/>
              <exon start="8415" stop="8519"/>
              <exon start="10291" stop="10492"/>
              <exon start="10568" stop="10677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10296" stop="10492"/>
              <exon start="10568" stop="10776"/>
              <exon start="12755" stop="12860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10297" stop="10492"/>
              <exon start="10568" stop="10776"/>
              <exon start="12755" stop="12879"/>
              <exon start="12980" stop="13031"/>
              <exon start="13119" stop="13205"/>
              <exon start="14697" stop="14723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10297" stop="10492"/>
              <exon start="10568" stop="10776"/>
              <exon start="12755" stop="12873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10584" stop="10776"/>
              <exon start="12755" stop="12879"/>
              <exon start="12980" stop="13031"/>
              <exon start="13119" stop="13205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10605" stop="10776"/>
              <exon start="12755" stop="12879"/>
              <exon start="12980" stop="13031"/>
              <exon start="13119" stop="13205"/>
              <exon start="14697" stop="14819"/>
              <exon start="15460" stop="15795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12760" stop="12879"/>
              <exon start="12980" stop="13031"/>
              <exon start="13119" stop="13205"/>
              <exon start="14697" stop="14819"/>
              <exon start="15460" stop="15823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12823" stop="12879"/>
              <exon start="12980" stop="13031"/>
              <exon start="13119" stop="13205"/>
              <exon start="14697" stop="14819"/>
              <exon start="15460" stop="15530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14781" stop="14819"/>
              <exon start="15460" stop="16034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15573" stop="16129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15573" stop="16101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15573" stop="16068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16071" stop="16335"/>
              <exon start="17032" stop="17070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237809" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAGTTTGAGGGTAATACTAGCATGACTGAGCCATGGTATGGAACTGCATATTCTATAGAGAAAGTTGGTGGTGACAGTATCAAG : CAATGGATGGAGCATGCTCCCAGTGAAGAGCTGCATCTCCCTGCTCCCAATGTGTTCATACCAACTGATTTATCACTTAAGCCCGTCTTCGAGAAG : ACAAAAGTTCCCATACTTCTGCGGAAGTCACCTTATTCAAGGTTATGGTATAAGCCCGATACAGCATTTTCATCTCCAAAAGCCTATGTTATGATCGATTTCAGTTGCCCATACTGTGGACATTCTCCAGAAGCTGAGGTTCTTACTGAGATATTTACACGTCTATTGATGGATTACTTGAATGAATATG : CTTATAATGCACAAGTTGCTGGTCTTTATTATGATATAAGCAAAACAAACAGTGGTTTTCAG : TTGACATTGTTTGGATATAATGACAAGTTGAGAGTCTTACTGGAAGCAGTCATTGAAAAAGTTGCGAAATTTGAAGTAAAACCAGACAGATTCTCTGTGGTCAAG : GAATTGGTGACAAAGCAATATCAGAATTTCAAGTTCCAACAGCCATATCAACAGGTTATGTATTACTGCTCATTACTGCTAAAAGACAACATATGGCCTTGGAATGAAGAACTTGAAGTGCTTCCACATCTTAAAGTTGATGATCTGGTTAAGTTCTATCCGCTTTTGATGGCTAGGTCCTTTATGGAGTGCTATGTAGCAG : GAAATGTTGAACAAGCTGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAG : GTGCATCAGGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCATGCAGAG : GAGCGACTCTGGTGTTCACGGGGTGCAGTTTATCGTTCAGTCAACTGCAAAG : GATCCCAAATACATTGACACAAGAGTGGAGTTATTTATGAAGATGTTTGAGAGCAAGCTTTATGAGATGACTAGTGATGAATTCAAG : AATAATGTCAATGCACTTATTGATATGAAGCTTGAGAAACACAAGAATTTACGGGAGGAATCTCGGTTTTACTGGAGGGAGATCTCAGATGGGACCCTCAAGTTTGATAGACGAGACCGTGAG : ATTGTCGCGTTAAAGCAACTGACTCAAAAGGAGCTGACAGATTTCTTCGATGAATATATTAAAGTCGGTGTTCCTCGGAAGAAGGCCTTAAGTGTCAGAGTCTATGGAAGCTCACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCAAGATACCTCTCTCGTATTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTAGGCGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTTGATGGGATAAATAAACTACAATGTACTTCAGTTTTTTTTTTTTTTGTTACTTAAAAATCTTCTTGATGTTACTAGTGTATTAGGCAAACTTATCAGGTGAATCTGTCCAAATTTTTAATGGATAGAATTATTTGATATTTGTGTTGGCGGTAGGTTGTCGGTTTTTGGAGAATTAGTTGGAAGTGTATAAGTTGGTTTGAGCACTACAGTTATTAAAAAAAAGATGTTTAGAGATAGTCATATGTGATGTTAGCTCTATGAGATCATAAAGATTAGTTTTTAACATGTAAATTGAGTATTCTCTCTCTAA : GAGATTAACAAAAAAGAAAAAGAAAACAAGATGACTAGG</gDNA_template>
            <first_frame> Q  S  L  R  V  I  L  A  *  L  S  H  G  M  E  L  H  I  L  *  R  K  L  V  V  T  V  S  S :   N  G  W  S  M  L  P  V  K  S  C  I  S  L  L  P  M  C  S  Y  Q  L  I  Y  H  L  S  P  S  S  R  R :   Q  K  F  P  Y  F  C  G  S  H  L  I  Q  G  Y  G  I  S  P  I  Q  H  F  H  L  Q  K  P  M  L  *  S  I  S  V  A  H  T  V  D  I  L  Q  K  L  R  F  L  L  R  Y  L  H  V  Y  *  W  I  T  *  M  N  M  :  L  I  M  H  K  L  L  V  F  I  M  I  *  A  K  Q  T  V  V  F  S :   *  H  C  L  D  I  M  T  S  *  E  S  Y  W  K  Q  S  L  K  K  L  R  N  L  K  *  N  Q  T  D  S  L  W  S  R :   N  W  *  Q  S  N  I  R  I  S  S  S  N  S  H  I  N  R  L  C  I  T  A  H  Y  C  *  K  T  T  Y  G  L  G  M  K  N  L  K  C  F  H  I  L  K  L  M  I  W  L  S  S  I  R  F  *  W  L  G  P  L  W  S  A  M  *  Q  :  E  M  L  N  K  L  K  Q  S  P  *  Y  S  L  L  K  M  C  S  S  R  V  H  S  Q  Y  Q  S  L  Y  L  H  L  S  I  *  Q  T  E  W  S  I  L  K  E  V  *  I  M  S  T  L  Q  R  D  *  I  Q  V  M  K  I  Q  L  L  F  I  I  F  R :   C  I  R  M  T  L  C  *  M  *  N  F  S  F  L  L  S  *  Q  S  S  Q  P  S  T  S  L  D  Q  S  S  N  L  V  I  S  L  C  S  C  R   : G  A  T  L  V  F  T  G  C  S  L  S  F  S  Q  L  Q  R :   I  P  N  T  L  T  Q  E  W  S  Y  L  *  R  C  L  R  A  S  F  M  R  *  L  V  M  N  S  R :   I  M  S  M  H  L  L  I  *  S  L  R  N  T  R  I  Y  G  R  N  L  G  F  T  G  G  R  S  Q  M  G  P  S  S  L  I  D  E  T  V  R :   L  S  R  *  S  N  *  L  K  R  S  *  Q  I  S  S  M  N  I  L  K  S  V  F  L  G  R  R  P  *  V  S  E  S  M  E  A  H  I  L  L  N  S  K  H  I  R  M  S  R  W  N  Q  M  Q  F  R  *  K  K  Y  L  A  F  D  D  L  G  L  F  I  V  H  S  K  E  A  L  V  M  *  D  C  K  R  S  H  S  S  S  R  S  P  P  M  Q  L  I  C  C  V  S  E  S  I  T  E  A  V  D  L  Q  D  T  S  L  V  F  S  C  V  N  *  S  V  V  R  G  L  V  V  G  V  *  V  *  L  L  N  *  F  D  D  V  L  L  R  D  L  E  E  V  N  V  Y  C  D  T  N  F  C  F  D  C  *  I  *  L  I  R  R  Q  E  V  T  *  I  R  P  E  R  K  I  I  H  S  W  C  *  W  D  K  *  T  T  M  Y  F  S  F  F  F  F  C  Y  L  K  I  F  L  M  L  L  V  Y  *  A  N  L  S  G  E  S  V  Q  I  F  N  G  *  N  Y  L  I  F  V  L  A  V  G  C  R  F  L  E  N  *  L  E  V  Y  K  L  V  *  A  L  Q  L  L  K  K  R  C  L  E  I  V  I  C  D  V  S  S  M  R  S  *  R  L  V  F  N  M  *  I  E  Y  S  L  S  K :   R  L  T  K  K  K  K  K  T  R  *  L   </first_frame>
            <second_frame>  K  V  *  G  *  Y  *  H  D  *  A  M  V  W  N  C  I  F  Y  R  E  S  W  W  *  Q  Y  Q   : A  M  D  G  A  C  S  Q  *  R  A  A  S  P  C  S  Q  C  V  H  T  N  *  F  I  T  *  A  R  L  R  E   : D  K  S  S  H  T  S  A  E  V  T  L  F  K  V  M  V  *  A  R  Y  S  I  F  I  S  K  S  L  C  Y  D  R  F  Q  L  P  I  L  W  T  F  S  R  S  *  G  S  Y  *  D  I  Y  T  S  I  D  G  L  L  E  *  I  C :   L  *  C  T  S  C  W  S  L  L  *  Y  K  Q  N  K  Q  W  F  S   : V  D  I  V  W  I  *  *  Q  V  E  S  L  T  G  S  S  H  *  K  S  C  E  I  *  S  K  T  R  Q  I  L  C  G  Q   : G  I  G  D  K  A  I  S  E  F  Q  V  P  T  A  I  S  T  G  Y  V  L  L  L  I  T  A  K  R  Q  H  M  A  L  E  *  R  T  *  S  A  S  T  S  *  S  *  *  S  G  *  V  L  S  A  F  D  G  *  V  L  Y  G  V  L  C  S  R :   K  C  *  T  S  *  S  R  V  H  D  T  A  Y  *  R  C  V  L  Q  G  S  T  V  N  I  K  A  S  I  C  I  S  A  S  D  K  Q  S  G  Q  S  *  K  R  C  K  L  C  L  R  C  R  G  T  K  S  K  *  *  K  F  S  S  C  S  L  Y  S   : G  A  S  G  *  L  Y  A  E  C  K  T  S  A  F  C  S  H  S  K  A  A  S  L  P  P  A  *  I  S  R  A  T  W  L  Y  H  C  A  H  A  E  :  E  R  L  W  C  S  R  G  A  V  Y  R  S  V  N  C  K   : G  S  Q  I  H  *  H  K  S  G  V  I  Y  E  D  V  *  E  Q  A  L  *  D  D  *  *  *  I  Q   : E  *  C  Q  C  T  Y  *  Y  E  A  *  E  T  Q  E  F  T  G  G  I  S  V  L  L  E  G  D  L  R  W  D  P  Q  V  *  *  T  R  P  *   : D  C  R  V  K  A  T  D  S  K  G  A  D  R  F  L  R  *  I  Y  *  S  R  C  S  S  E  E  G  L  K  C  Q  S  L  W  K  L  T  F  F  S  I  P  S  T  *  E  *  A  D  G  T  K  C  S  S  D  R  R  N  I  *  L  S  T  I  S  A  S  L  *  F  I  Q  R  R  L  W  S  C  E  I  V  R  G  R  I  A  A  R  E  A  P  Q  C  S  *  Y  V  A  L  A  S  P  L  Q  K  Q  L  I  C  K  I  P  L  S  Y  S  V  V  S  I  S  Q  L  Y  E  G  S  W  *  A  C  E  F  N  C  S  T  D  L  M  M  Y  C  L  E  I  W  K  K  *  M  Y  T  V  T  P  I  S  V  L  I  A  E  Y  N  *  S  E  D  K  K  *  H  E  L  D  L  K  G  K  L  F  I  H  G  V  D  G  I  N  K  L  Q  C  T  S  V  F  F  F  F  V  T  *  K  S  S  *  C  Y  *  C  I  R  Q  T  Y  Q  V  N  L  S  K  F  L  M  D  R  I  I  *  Y  L  C  W  R  *  V  V  G  F  W  R  I  S  W  K  C  I  S  W  F  E  H  Y  S  Y  *  K  K  D  V  *  R  *  S  Y  V  M  L  A  L  *  D  H  K  D  *  F  L  T  C  K  L  S  I  L  S  L   : R  D  *  Q  K  R  K  R  K  Q  D  D  *  </second_frame>
            <third_frame>   K  F  E  G  N  T  S  M  T  E  P  W  Y  G  T  A  Y  S  I  E  K  V  G  G  D  S  I  K  :  Q  W  M  E  H  A  P  S  E  E  L  H  L  P  A  P  N  V  F  I  P  T  D  L  S  L  K  P  V  F  E  K  :  T  K  V  P  I  L  L  R  K  S  P  Y  S  R  L  W  Y  K  P  D  T  A  F  S  S  P  K  A  Y  V  M  I  D  F  S  C  P  Y  C  G  H  S  P  E  A  E  V  L  T  E  I  F  T  R  L  L  M  D  Y  L  N  E  Y   : A  Y  N  A  Q  V  A  G  L  Y  Y  D  I  S  K  T  N  S  G  F  Q  :  L  T  L  F  G  Y  N  D  K  L  R  V  L  L  E  A  V  I  E  K  V  A  K  F  E  V  K  P  D  R  F  S  V  V  K  :  E  L  V  T  K  Q  Y  Q  N  F  K  F  Q  Q  P  Y  Q  Q  V  M  Y  Y  C  S  L  L  L  K  D  N  I  W  P  W  N  E  E  L  E  V  L  P  H  L  K  V  D  D  L  V  K  F  Y  P  L  L  M  A  R  S  F  M  E  C  Y  V  A   : G  N  V  E  Q  A  E  A  E  S  M  I  Q  L  I  E  D  V  F  F  K  G  P  Q  S  I  S  K  P  L  F  A  S  Q  H  L  T  N  R  V  V  N  L  E  R  G  V  N  Y  V  Y  A  A  E  G  L  N  P  S  D  E  N  S  A  L  V  H  Y  I  Q  :  V  H  Q  D  D  F  M  L  N  V  K  L  Q  L  F  A  L  I  A  K  Q  P  A  F  H  Q  L  R  S  V  E  Q  L  G  Y  I  T  V  L  M  Q  R :   S  D  S  G  V  H  G  V  Q  F  I  V  Q  S  T  A  K  :  D  P  K  Y  I  D  T  R  V  E  L  F  M  K  M  F  E  S  K  L  Y  E  M  T  S  D  E  F  K  :  N  N  V  N  A  L  I  D  M  K  L  E  K  H  K  N  L  R  E  E  S  R  F  Y  W  R  E  I  S  D  G  T  L  K  F  D  R  R  D  R  E  :  I  V  A  L  K  Q  L  T  Q  K  E  L  T  D  F  F  D  E  Y  I  K  V  G  V  P  R  K  K  A  L  S  V  R  V  Y  G  S  S  H  S  S  Q  F  Q  A  H  K  N  E  Q  M  E  P  N  A  V  Q  I  E  E  I  F  S  F  R  R  S  R  P  L  Y  S  S  F  K  G  G  F  G  H  V  R  L  *  E  V  A  *  Q  L  E  K  P  P  N  A  V  D  M  L  R  *  R  V  H  Y  R  S  S  *  S  A  R  Y  L  S  R  I  Q  L  C  Q  L  V  S  C  T  R  A  R  G  R  R  V  S  L  I  A  Q  L  I  *  *  C  T  A  *  R  F  G  R  S  E  C  I  L  *  H  Q  F  L  F  *  L  L  N  I  I  D  Q  K  T  R  S  D  M  N  *  T  *  K  E  N  Y  S  F  M  V  L  M  G  *  I  N  Y  N  V  L  Q  F  F  F  F  L  L  L  K  N  L  L  D  V  T  S  V  L  G  K  L  I  R  *  I  C  P  N  F  *  W  I  E  L  F  D  I  C  V  G  G  R  L  S  V  F  G  E  L  V  G  S  V  *  V  G  L  S  T  T  V  I  K  K  K  M  F  R  D  S  H  M  *  C  *  L  Y  E  I  I  K  I  S  F  *  H  V  N  *  V  F  S  L  *  :  E  I  N  K  K  E  K  E  N  K  M  T  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6883" stop="6966"/>
                    <exon start="7080" stop="7175"/>
                    <exon start="7440" stop="7629"/>
                    <exon start="7827" stop="7888"/>
                    <exon start="8415" stop="8519"/>
                    <exon start="10291" stop="10492"/>
                    <exon start="10568" stop="10776"/>
                    <exon start="12755" stop="12879"/>
                    <exon start="12980" stop="13031"/>
                    <exon start="13119" stop="13205"/>
                    <exon start="14697" stop="14819"/>
                    <exon start="15460" stop="15711"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1584</number_coding_nucleotides>
                  <number_encoded_amino_acids>528</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFEGNTSMTEPWYGTAYSIEKVGGDSIKQWMEHAPSEELHLPAPNVFIPTDLSLKPVFEKTKVPILLRKSPYSRLWYKPDTAFSSPKAYVMIDFSCPYCGHSPEAEVLTEIFTRLLMDYLNEYAYNAQVAGLYYDISKTNSGFQLTLFGYNDKLRVLLEAVIEKVAKFEVKPDRFSVVKELVTKQYQNFKFQQPYQQVMYYCSLLLKDNIWPWNEELEVLPHLKVDDLVKFYPLLMARSFMECYVAGNVEQAEAESMIQLIEDVFFKGPQSISKPLFASQHLTNRVVNLERGVNYVYAAEGLNPSDENSALVHYIQVHQDDFMLNVKLQLFALIAKQPAFHQLRSVEQLGYITVLMQRSDSGVHGVQFIVQSTAKDPKYIDTRVELFMKMFESKLYEMTSDEFKNNVNALIDMKLEKHKNLREESRFYWREISDGTLKFDRRDREIVALKQLTQKELTDFFDEYIKVGVPRKKALSVRVYGSSHSSQFQAHKNEQMEPNAVQIEEIFSFRRSRPLYSSFKGGFGHVRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="6881" e_stop="6966"/>
            <exon e_start="7080" e_stop="7175"/>
            <exon e_start="7440" e_stop="7629"/>
            <exon e_start="7827" e_stop="7888"/>
            <exon e_start="8415" e_stop="8519"/>
            <exon e_start="10291" e_stop="10492"/>
            <exon e_start="10568" e_stop="10776"/>
            <exon e_start="12755" e_stop="12879"/>
            <exon e_start="12980" e_stop="13031"/>
            <exon e_start="13119" e_stop="13205"/>
            <exon e_start="14697" e_stop="14819"/>
            <exon e_start="15460" e_stop="16047"/>
            <exon e_start="16109" e_stop="16118"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.421" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.721" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.553" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.641" e_score="1.000"/>
          <exon-intron don_prob="0.702" acc_prob="0.176" e_score="0.988"/>
          <exon-only e_score="0.400"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6881" e_stop="6966" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="6967" i_stop="7079" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7080" e_stop="7175" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.933" acc_prob="0.421">
            <gDNA_intron_boundary i_start="7176" i_stop="7439" i_length="264"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7440" e_stop="7629" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.790">
            <gDNA_intron_boundary i_start="7630" i_stop="7826" i_length="197"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7827" e_stop="7888" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="7889" i_stop="8414" i_length="526"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8415" e_stop="8519" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.971">
            <gDNA_intron_boundary i_start="8520" i_stop="10290" i_length="1771"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="10291" e_stop="10492" e_length="202"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.990">
            <gDNA_intron_boundary i_start="10493" i_stop="10567" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="10568" e_stop="10776" e_length="209"/>
          </exon>
          <intron i_serial="7" don_prob="0.973" acc_prob="0.721">
            <gDNA_intron_boundary i_start="10777" i_stop="12754" i_length="1978"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="12755" e_stop="12879" e_length="125"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.553">
            <gDNA_intron_boundary i_start="12880" i_stop="12979" i_length="100"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="12980" e_stop="13031" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.988" acc_prob="0.883">
            <gDNA_intron_boundary i_start="13032" i_stop="13118" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="13119" e_stop="13205" e_length="87"/>
          </exon>
          <intron i_serial="10" don_prob="0.988" acc_prob="0.972">
            <gDNA_intron_boundary i_start="13206" i_stop="14696" i_length="1491"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="14697" e_stop="14819" e_length="123"/>
          </exon>
          <intron i_serial="11" don_prob="0.989" acc_prob="0.641">
            <gDNA_intron_boundary i_start="14820" i_stop="15459" i_length="640"/>
          </intron>
          <exon e_serial="12" e_score="0.988">
            <gDNA_exon_boundary e_start="15460" e_stop="16047" e_length="588"/>
          </exon>
          <intron i_serial="12" don_prob="0.702" acc_prob="0.176">
            <gDNA_intron_boundary i_start="16048" i_stop="16108" i_length="61"/>
          </intron>
          <exon e_serial="13" e_score="0.400">
            <gDNA_exon_boundary e_start="16109" e_stop="16118" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6881" stop="6966"/>
              <exon start="7080" stop="7175"/>
              <exon start="7440" stop="7629"/>
              <exon start="7827" stop="7888"/>
              <exon start="8415" stop="8519"/>
              <exon start="10291" stop="10492"/>
              <exon start="10568" stop="10677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10296" stop="10492"/>
              <exon start="10568" stop="10776"/>
              <exon start="12755" stop="12860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10297" stop="10492"/>
              <exon start="10568" stop="10776"/>
              <exon start="12755" stop="12879"/>
              <exon start="12980" stop="13031"/>
              <exon start="13119" stop="13205"/>
              <exon start="14697" stop="14723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10297" stop="10492"/>
              <exon start="10568" stop="10776"/>
              <exon start="12755" stop="12873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10584" stop="10776"/>
              <exon start="12755" stop="12879"/>
              <exon start="12980" stop="13031"/>
              <exon start="13119" stop="13205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10605" stop="10776"/>
              <exon start="12755" stop="12879"/>
              <exon start="12980" stop="13031"/>
              <exon start="13119" stop="13205"/>
              <exon start="14697" stop="14819"/>
              <exon start="15460" stop="15795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12760" stop="12879"/>
              <exon start="12980" stop="13031"/>
              <exon start="13119" stop="13205"/>
              <exon start="14697" stop="14819"/>
              <exon start="15460" stop="15823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12823" stop="12879"/>
              <exon start="12980" stop="13031"/>
              <exon start="13119" stop="13205"/>
              <exon start="14697" stop="14819"/>
              <exon start="15460" stop="15530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14701" stop="14819"/>
              <exon start="15460" stop="16047"/>
              <exon start="16109" stop="16118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370313" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14781" stop="14819"/>
              <exon start="15460" stop="16034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAGTTTGAGGGTAATACTAGCATGACTGAGCCATGGTATGGAACTGCATATTCTATAGAGAAAGTTGGTGGTGACAGTATCAAG : CAATGGATGGAGCATGCTCCCAGTGAAGAGCTGCATCTCCCTGCTCCCAATGTGTTCATACCAACTGATTTATCACTTAAGCCCGTCTTCGAGAAG : ACAAAAGTTCCCATACTTCTGCGGAAGTCACCTTATTCAAGGTTATGGTATAAGCCCGATACAGCATTTTCATCTCCAAAAGCCTATGTTATGATCGATTTCAGTTGCCCATACTGTGGACATTCTCCAGAAGCTGAGGTTCTTACTGAGATATTTACACGTCTATTGATGGATTACTTGAATGAATATG : CTTATAATGCACAAGTTGCTGGTCTTTATTATGATATAAGCAAAACAAACAGTGGTTTTCAG : TTGACATTGTTTGGATATAATGACAAGTTGAGAGTCTTACTGGAAGCAGTCATTGAAAAAGTTGCGAAATTTGAAGTAAAACCAGACAGATTCTCTGTGGTCAAG : GAATTGGTGACAAAGCAATATCAGAATTTCAAGTTCCAACAGCCATATCAACAGGTTATGTATTACTGCTCATTACTGCTAAAAGACAACATATGGCCTTGGAATGAAGAACTTGAAGTGCTTCCACATCTTAAAGTTGATGATCTGGTTAAGTTCTATCCGCTTTTGATGGCTAGGTCCTTTATGGAGTGCTATGTAGCAG : GAAATGTTGAACAAGCTGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAG : GTGCATCAGGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCATGCAGAG : GAGCGACTCTGGTGTTCACGGGGTGCAGTTTATCGTTCAGTCAACTGCAAAG : GATCCCAAATACATTGACACAAGAGTGGAGTTATTTATGAAGATGTTTGAGAGCAAGCTTTATGAGATGACTAGTGATGAATTCAAG : AATAATGTCAATGCACTTATTGATATGAAGCTTGAGAAACACAAGAATTTACGGGAGGAATCTCGGTTTTACTGGAGGGAGATCTCAGATGGGACCCTCAAGTTTGATAGACGAGACCGTGAG : ATTGTCGCGTTAAAGCAACTGACTCAAAAGGAGCTGACAGATTTCTTCGATGAATATATTAAAGTCGGTGTTCCTCGGAAGAAGGCCTTAAGTGTCAGAGTCTATGGAAGCTCACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCAAGATACCTCTCTCGTATTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTAGGCGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTTGATGGGATAAATAAACTACAAT : GCAAACTTAT</gDNA_template>
            <first_frame> Q  S  L  R  V  I  L  A  *  L  S  H  G  M  E  L  H  I  L  *  R  K  L  V  V  T  V  S  S :   N  G  W  S  M  L  P  V  K  S  C  I  S  L  L  P  M  C  S  Y  Q  L  I  Y  H  L  S  P  S  S  R  R :   Q  K  F  P  Y  F  C  G  S  H  L  I  Q  G  Y  G  I  S  P  I  Q  H  F  H  L  Q  K  P  M  L  *  S  I  S  V  A  H  T  V  D  I  L  Q  K  L  R  F  L  L  R  Y  L  H  V  Y  *  W  I  T  *  M  N  M  :  L  I  M  H  K  L  L  V  F  I  M  I  *  A  K  Q  T  V  V  F  S :   *  H  C  L  D  I  M  T  S  *  E  S  Y  W  K  Q  S  L  K  K  L  R  N  L  K  *  N  Q  T  D  S  L  W  S  R :   N  W  *  Q  S  N  I  R  I  S  S  S  N  S  H  I  N  R  L  C  I  T  A  H  Y  C  *  K  T  T  Y  G  L  G  M  K  N  L  K  C  F  H  I  L  K  L  M  I  W  L  S  S  I  R  F  *  W  L  G  P  L  W  S  A  M  *  Q  :  E  M  L  N  K  L  K  Q  S  P  *  Y  S  L  L  K  M  C  S  S  R  V  H  S  Q  Y  Q  S  L  Y  L  H  L  S  I  *  Q  T  E  W  S  I  L  K  E  V  *  I  M  S  T  L  Q  R  D  *  I  Q  V  M  K  I  Q  L  L  F  I  I  F  R :   C  I  R  M  T  L  C  *  M  *  N  F  S  F  L  L  S  *  Q  S  S  Q  P  S  T  S  L  D  Q  S  S  N  L  V  I  S  L  C  S  C  R   : G  A  T  L  V  F  T  G  C  S  L  S  F  S  Q  L  Q  R :   I  P  N  T  L  T  Q  E  W  S  Y  L  *  R  C  L  R  A  S  F  M  R  *  L  V  M  N  S  R :   I  M  S  M  H  L  L  I  *  S  L  R  N  T  R  I  Y  G  R  N  L  G  F  T  G  G  R  S  Q  M  G  P  S  S  L  I  D  E  T  V  R :   L  S  R  *  S  N  *  L  K  R  S  *  Q  I  S  S  M  N  I  L  K  S  V  F  L  G  R  R  P  *  V  S  E  S  M  E  A  H  I  L  L  N  S  K  H  I  R  M  S  R  W  N  Q  M  Q  F  R  *  K  K  Y  L  A  F  D  D  L  G  L  F  I  V  H  S  K  E  A  L  V  M  *  D  C  K  R  S  H  S  S  S  R  S  P  P  M  Q  L  I  C  C  V  S  E  S  I  T  E  A  V  D  L  Q  D  T  S  L  V  F  S  C  V  N  *  S  V  V  R  G  L  V  V  G  V  *  V  *  L  L  N  *  F  D  D  V  L  L  R  D  L  E  E  V  N  V  Y  C  D  T  N  F  C  F  D  C  *  I  *  L  I  R  R  Q  E  V  T  *  I  R  P  E  R  K  I  I  H  S  W  C  *  W  D  K  *  T  T  M :   Q  T  Y </first_frame>
            <second_frame>  K  V  *  G  *  Y  *  H  D  *  A  M  V  W  N  C  I  F  Y  R  E  S  W  W  *  Q  Y  Q   : A  M  D  G  A  C  S  Q  *  R  A  A  S  P  C  S  Q  C  V  H  T  N  *  F  I  T  *  A  R  L  R  E   : D  K  S  S  H  T  S  A  E  V  T  L  F  K  V  M  V  *  A  R  Y  S  I  F  I  S  K  S  L  C  Y  D  R  F  Q  L  P  I  L  W  T  F  S  R  S  *  G  S  Y  *  D  I  Y  T  S  I  D  G  L  L  E  *  I  C :   L  *  C  T  S  C  W  S  L  L  *  Y  K  Q  N  K  Q  W  F  S   : V  D  I  V  W  I  *  *  Q  V  E  S  L  T  G  S  S  H  *  K  S  C  E  I  *  S  K  T  R  Q  I  L  C  G  Q   : G  I  G  D  K  A  I  S  E  F  Q  V  P  T  A  I  S  T  G  Y  V  L  L  L  I  T  A  K  R  Q  H  M  A  L  E  *  R  T  *  S  A  S  T  S  *  S  *  *  S  G  *  V  L  S  A  F  D  G  *  V  L  Y  G  V  L  C  S  R :   K  C  *  T  S  *  S  R  V  H  D  T  A  Y  *  R  C  V  L  Q  G  S  T  V  N  I  K  A  S  I  C  I  S  A  S  D  K  Q  S  G  Q  S  *  K  R  C  K  L  C  L  R  C  R  G  T  K  S  K  *  *  K  F  S  S  C  S  L  Y  S   : G  A  S  G  *  L  Y  A  E  C  K  T  S  A  F  C  S  H  S  K  A  A  S  L  P  P  A  *  I  S  R  A  T  W  L  Y  H  C  A  H  A  E  :  E  R  L  W  C  S  R  G  A  V  Y  R  S  V  N  C  K   : G  S  Q  I  H  *  H  K  S  G  V  I  Y  E  D  V  *  E  Q  A  L  *  D  D  *  *  *  I  Q   : E  *  C  Q  C  T  Y  *  Y  E  A  *  E  T  Q  E  F  T  G  G  I  S  V  L  L  E  G  D  L  R  W  D  P  Q  V  *  *  T  R  P  *   : D  C  R  V  K  A  T  D  S  K  G  A  D  R  F  L  R  *  I  Y  *  S  R  C  S  S  E  E  G  L  K  C  Q  S  L  W  K  L  T  F  F  S  I  P  S  T  *  E  *  A  D  G  T  K  C  S  S  D  R  R  N  I  *  L  S  T  I  S  A  S  L  *  F  I  Q  R  R  L  W  S  C  E  I  V  R  G  R  I  A  A  R  E  A  P  Q  C  S  *  Y  V  A  L  A  S  P  L  Q  K  Q  L  I  C  K  I  P  L  S  Y  S  V  V  S  I  S  Q  L  Y  E  G  S  W  *  A  C  E  F  N  C  S  T  D  L  M  M  Y  C  L  E  I  W  K  K  *  M  Y  T  V  T  P  I  S  V  L  I  A  E  Y  N  *  S  E  D  K  K  *  H  E  L  D  L  K  G  K  L  F  I  H  G  V  D  G  I  N  K  L  Q   : C  K  L   </second_frame>
            <third_frame>   K  F  E  G  N  T  S  M  T  E  P  W  Y  G  T  A  Y  S  I  E  K  V  G  G  D  S  I  K  :  Q  W  M  E  H  A  P  S  E  E  L  H  L  P  A  P  N  V  F  I  P  T  D  L  S  L  K  P  V  F  E  K  :  T  K  V  P  I  L  L  R  K  S  P  Y  S  R  L  W  Y  K  P  D  T  A  F  S  S  P  K  A  Y  V  M  I  D  F  S  C  P  Y  C  G  H  S  P  E  A  E  V  L  T  E  I  F  T  R  L  L  M  D  Y  L  N  E  Y   : A  Y  N  A  Q  V  A  G  L  Y  Y  D  I  S  K  T  N  S  G  F  Q  :  L  T  L  F  G  Y  N  D  K  L  R  V  L  L  E  A  V  I  E  K  V  A  K  F  E  V  K  P  D  R  F  S  V  V  K  :  E  L  V  T  K  Q  Y  Q  N  F  K  F  Q  Q  P  Y  Q  Q  V  M  Y  Y  C  S  L  L  L  K  D  N  I  W  P  W  N  E  E  L  E  V  L  P  H  L  K  V  D  D  L  V  K  F  Y  P  L  L  M  A  R  S  F  M  E  C  Y  V  A   : G  N  V  E  Q  A  E  A  E  S  M  I  Q  L  I  E  D  V  F  F  K  G  P  Q  S  I  S  K  P  L  F  A  S  Q  H  L  T  N  R  V  V  N  L  E  R  G  V  N  Y  V  Y  A  A  E  G  L  N  P  S  D  E  N  S  A  L  V  H  Y  I  Q  :  V  H  Q  D  D  F  M  L  N  V  K  L  Q  L  F  A  L  I  A  K  Q  P  A  F  H  Q  L  R  S  V  E  Q  L  G  Y  I  T  V  L  M  Q  R :   S  D  S  G  V  H  G  V  Q  F  I  V  Q  S  T  A  K  :  D  P  K  Y  I  D  T  R  V  E  L  F  M  K  M  F  E  S  K  L  Y  E  M  T  S  D  E  F  K  :  N  N  V  N  A  L  I  D  M  K  L  E  K  H  K  N  L  R  E  E  S  R  F  Y  W  R  E  I  S  D  G  T  L  K  F  D  R  R  D  R  E  :  I  V  A  L  K  Q  L  T  Q  K  E  L  T  D  F  F  D  E  Y  I  K  V  G  V  P  R  K  K  A  L  S  V  R  V  Y  G  S  S  H  S  S  Q  F  Q  A  H  K  N  E  Q  M  E  P  N  A  V  Q  I  E  E  I  F  S  F  R  R  S  R  P  L  Y  S  S  F  K  G  G  F  G  H  V  R  L  *  E  V  A  *  Q  L  E  K  P  P  N  A  V  D  M  L  R  *  R  V  H  Y  R  S  S  *  S  A  R  Y  L  S  R  I  Q  L  C  Q  L  V  S  C  T  R  A  R  G  R  R  V  S  L  I  A  Q  L  I  *  *  C  T  A  *  R  F  G  R  S  E  C  I  L  *  H  Q  F  L  F  *  L  L  N  I  I  D  Q  K  T  R  S  D  M  N  *  T  *  K  E  N  Y  S  F  M  V  L  M  G  *  I  N  Y  N  :  A  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6883" stop="6966"/>
                    <exon start="7080" stop="7175"/>
                    <exon start="7440" stop="7629"/>
                    <exon start="7827" stop="7888"/>
                    <exon start="8415" stop="8519"/>
                    <exon start="10291" stop="10492"/>
                    <exon start="10568" stop="10776"/>
                    <exon start="12755" stop="12879"/>
                    <exon start="12980" stop="13031"/>
                    <exon start="13119" stop="13205"/>
                    <exon start="14697" stop="14819"/>
                    <exon start="15460" stop="15711"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1584</number_coding_nucleotides>
                  <number_encoded_amino_acids>528</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFEGNTSMTEPWYGTAYSIEKVGGDSIKQWMEHAPSEELHLPAPNVFIPTDLSLKPVFEKTKVPILLRKSPYSRLWYKPDTAFSSPKAYVMIDFSCPYCGHSPEAEVLTEIFTRLLMDYLNEYAYNAQVAGLYYDISKTNSGFQLTLFGYNDKLRVLLEAVIEKVAKFEVKPDRFSVVKELVTKQYQNFKFQQPYQQVMYYCSLLLKDNIWPWNEELEVLPHLKVDDLVKFYPLLMARSFMECYVAGNVEQAEAESMIQLIEDVFFKGPQSISKPLFASQHLTNRVVNLERGVNYVYAAEGLNPSDENSALVHYIQVHQDDFMLNVKLQLFALIAKQPAFHQLRSVEQLGYITVLMQRSDSGVHGVQFIVQSTAKDPKYIDTRVELFMKMFESKLYEMTSDEFKNNVNALIDMKLEKHKNLREESRFYWREISDGTLKFDRRDREIVALKQLTQKELTDFFDEYIKVGVPRKKALSVRVYGSSHSSQFQAHKNEQMEPNAVQIEEIFSFRRSRPLYSSFKGGFGHVRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16058" PGL_stop="15483"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16058" e_stop="15483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="16058" e_stop="15483" e_length="576"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16058" stop="15483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16054" stop="15583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16054" stop="15643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16054" stop="15666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16040" stop="15596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTGAAGTACATTGTAGTTTATTTATCCCATCAACACCATGAATGAATAATTTTCCTTTCAGGTCTAATTCATGTCACTTCTTGTCTTCTGATCAATTATATTCAGCAATCAAAACAGAAATTGGTGTCACAGTATACATTCACTTCTTCCAAATCTCTAAGCAGTACATCATCAAATCAGTTGAGCAATTAAACTCACACGCCTACCACGAGCCCTCGTACAACTGACTAATTGACACAACTGAATACGAGAGAGGTATCTTGCAGATCAACTGCTTCTGTAATGGACTCGCTAACGCAACATATCAACTGCATTGGGGGGCTTCTCGAGCTGCTATGCGACCTCTTACAATCTCACATGACCAAAGCCTCCTTTGAATGAACTATAAAGAGGCCGAGATCGTCGAAAGCTAAATATTTCTTCTATCTGAACTGCATTTGGTTCCATCTGCTCATTCTTATGTGCTTGGAATTGAGAAGAATGTGAGCTTCCATAGACTCTGACACTTAAGGCCTTCTTCCGAGGAACACCGACTTTAATATATTCATCGAAGAAATCTGTCAGCTCCTTTTGA</gDNA_template>
            <first_frame> N  *  S  T  L  *  F  I  Y  P  I  N  T  M  N  E  *  F  S  F  Q  V  *  F  M  S  L  L  V  F  *  S  I  I  F  S  N  Q  N  R  N  W  C  H  S  I  H  S  L  L  P  N  L  *  A  V  H  H  Q  I  S  *  A  I  K  L  T  R  L  P  R  A  L  V  Q  L  T  N  *  H  N  *  I  R  E  R  Y  L  A  D  Q  L  L  L  *  W  T  R  *  R  N  I  S  T  A  L  G  G  F  S  S  C  Y  A  T  S  Y  N  L  T  *  P  K  P  P  L  N  E  L  *  R  G  R  D  R  R  K  L  N  I  S  S  I  *  T  A  F  G  S  I  C  S  F  L  C  A  W  N  *  E  E  C  E  L  P  *  T  L  T  L  K  A  F  F  R  G  T  P  T  L  I  Y  S  S  K  K  S  V  S  S  F  * </first_frame>
            <second_frame>  T  E  V  H  C  S  L  F  I  P  S  T  P  *  M  N  N  F  P  F  R  S  N  S  C  H  F  L  S  S  D  Q  L  Y  S  A  I  K  T  E  I  G  V  T  V  Y  I  H  F  F  Q  I  S  K  Q  Y  I  I  K  S  V  E  Q  L  N  S  H  A  Y  H  E  P  S  Y  N  *  L  I  D  T  T  E  Y  E  R  G  I  L  Q  I  N  C  F  C  N  G  L  A  N  A  T  Y  Q  L  H  W  G  A  S  R  A  A  M  R  P  L  T  I  S  H  D  Q  S  L  L  *  M  N  Y  K  E  A  E  I  V  E  S  *  I  F  L  L  S  E  L  H  L  V  P  S  A  H  S  Y  V  L  G  I  E  K  N  V  S  F  H  R  L  *  H  L  R  P  S  S  E  E  H  R  L  *  Y  I  H  R  R  N  L  S  A  P  F   </second_frame>
            <third_frame>   L  K  Y  I  V  V  Y  L  S  H  Q  H  H  E  *  I  I  F  L  S  G  L  I  H  V  T  S  C  L  L  I  N  Y  I  Q  Q  S  K  Q  K  L  V  S  Q  Y  T  F  T  S  S  K  S  L  S  S  T  S  S  N  Q  L  S  N  *  T  H  T  P  T  T  S  P  R  T  T  D  *  L  T  Q  L  N  T  R  E  V  S  C  R  S  T  A  S  V  M  D  S  L  T  Q  H  I  N  C  I  G  G  L  L  E  L  L  C  D  L  L  Q  S  H  M  T  K  A  S  F  E  *  T  I  K  R  P  R  S  S  K  A  K  Y  F  F  Y  L  N  C  I  W  F  H  L  L  I  L  M  C  L  E  L  R  R  M  *  A  S  I  D  S  D  T  *  G  L  L  P  R  N  T  D  F  N  I  F  I  E  E  I  C  Q  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0114C15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="17178" PGL_stop="23430"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17178" e_stop="17488"/>
            <exon e_start="17587" e_stop="17662"/>
            <exon e_start="18395" e_stop="18462"/>
            <exon e_start="23204" e_stop="23295"/>
            <exon e_start="23368" e_stop="23430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="0.939" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="17178" e_stop="17488" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17489" i_stop="17586" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17587" e_stop="17662" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.903">
            <gDNA_intron_boundary i_start="17663" i_stop="18394" i_length="732"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18395" e_stop="18462" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="18463" i_stop="23203" i_length="4741"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23204" e_stop="23295" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="23296" i_stop="23367" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23368" e_stop="23430" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17178" stop="17488"/>
              <exon start="17587" stop="17658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17203" stop="17488"/>
              <exon start="17587" stop="17662"/>
              <exon start="18395" stop="18462"/>
              <exon start="23204" stop="23295"/>
              <exon start="23368" stop="23430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAATATTACGGAAATTTCTCTACAAGTGCAGGTTTTATTGATGCAAGTTGAGATTTTGAACTTACCCTTTACTTTCATTTGTTGTATTTCGGTGATTCTTGAAATACCCATTTGGGATTTTGGACTTAAATCGTGTTTTTTGAGCTATTGAGATTTGGGGTTGTTAAACTTTGCGAGAAAATGGCTGTGGGCAAAGCAGATGAACCTGTAGAGATCTTTAAGGCTCGTTCTGATAAGAGGGAGTACAGAAGAATAGTTCTTCAGAACTCTCTTGAAGTTCTACTAATCACTGATCCTGAAACAGACAAG : TGTGCTGCTTCTATGGAGGTGTCAGTGGGGTATTACAGTGATCCTAAGGGTCTTGAAGGCCTTGCTCATTTTCTTG : AACATATGCTGTTTTATGCAAGTGAGAAGTATCCTGTGGAGAATAGTTACTCAAAATACATCACCCAG : CACGGAGGTTCCACCAATGCCTTTACATCTTCTGAGCGCACCAACTTTTACTTCGATATCAATGCAGATTGTTTTGAAGAAGCATTGGACAG : ATTTGCGCAGTTTTTTGTCAAACCATTGATGTCACCTGATGCCACAACAAGGGAAATAAAAGC</gDNA_template>
            <first_frame> I  N  I  T  E  I  S  L  Q  V  Q  V  L  L  M  Q  V  E  I  L  N  L  P  F  T  F  I  C  C  I  S  V  I  L  E  I  P  I  W  D  F  G  L  K  S  C  F  L  S  Y  *  D  L  G  L  L  N  F  A  R  K  W  L  W  A  K  Q  M  N  L  *  R  S  L  R  L  V  L  I  R  G  S  T  E  E  *  F  F  R  T  L  L  K  F  Y  *  S  L  I  L  K  Q  T  S :   V  L  L  L  W  R  C  Q  W  G  I  T  V  I  L  R  V  L  K  A  L  L  I  F  L  :  N  I  C  C  F  M  Q  V  R  S  I  L  W  R  I  V  T  Q  N  T  S  P  S :   T  E  V  P  P  M  P  L  H  L  L  S  A  P  T  F  T  S  I  S  M  Q  I  V  L  K  K  H  W  T   : D  L  R  S  F  L  S  N  H  *  C  H  L  M  P  Q  Q  G  K  *  K  </first_frame>
            <second_frame>  S  I  L  R  K  F  L  Y  K  C  R  F  Y  *  C  K  L  R  F  *  T  Y  P  L  L  S  F  V  V  F  R  *  F  L  K  Y  P  F  G  I  L  D  L  N  R  V  F  *  A  I  E  I  W  G  C  *  T  L  R  E  N  G  C  G  Q  S  R  *  T  C  R  D  L  *  G  S  F  *  *  E  G  V  Q  K  N  S  S  S  E  L  S  *  S  S  T  N  H  *  S  *  N  R  Q   : V  C  C  F  Y  G  G  V  S  G  V  L  Q  *  S  *  G  S  *  R  P  C  S  F  S  * :   T  Y  A  V  L  C  K  *  E  V  S  C  G  E  *  L  L  K  I  H  H  P   : A  R  R  F  H  Q  C  L  Y  I  F  *  A  H  Q  L  L  L  R  Y  Q  C  R  L  F  *  R  S  I  G  Q  :  I  C  A  V  F  C  Q  T  I  D  V  T  *  C  H  N  K  G  N  K  S </second_frame>
            <third_frame>   Q  Y  Y  G  N  F  S  T  S  A  G  F  I  D  A  S  *  D  F  E  L  T  L  Y  F  H  L  L  Y  F  G  D  S  *  N  T  H  L  G  F  W  T  *  I  V  F  F  E  L  L  R  F  G  V  V  K  L  C  E  K  M  A  V  G  K  A  D  E  P  V  E  I  F  K  A  R  S  D  K  R  E  Y  R  R  I  V  L  Q  N  S  L  E  V  L  L  I  T  D  P  E  T  D  K  :  C  A  A  S  M  E  V  S  V  G  Y  Y  S  D  P  K  G  L  E  G  L  A  H  F  L   : E  H  M  L  F  Y  A  S  E  K  Y  P  V  E  N  S  Y  S  K  Y  I  T  Q  :  H  G  G  S  T  N  A  F  T  S  S  E  R  T  N  F  Y  F  D  I  N  A  D  C  F  E  E  A  L  D  R :   F  A  Q  F  F  V  K  P  L  M  S  P  D  A  T  T  R  E  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17309" stop="17488"/>
                    <exon start="17587" stop="17662"/>
                    <exon start="18395" stop="18462"/>
                    <exon start="23204" stop="23295"/>
                    <exon start="23368" stop="23428"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVFFELLRFGVVKLCEKMAVGKADEPVEIFKARSDKREYRRIVLQNSLEVLLITDPETDKCAASMEVSVGYYSDPKGLEGLAHFLEHMLFYASEKYPVENSYSKYITQHGGSTNAFTSSERTNFYFDINADCFEEALDRFAQFFVKPLMSPDATTREIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="25132" PGL_stop="36904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25132" e_stop="25205"/>
            <exon e_start="25290" e_stop="25402"/>
            <exon e_start="26181" e_stop="26343"/>
            <exon e_start="26805" e_stop="26897"/>
            <exon e_start="27078" e_stop="27163"/>
            <exon e_start="32340" e_stop="32426"/>
            <exon e_start="36801" e_stop="36904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.284" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.797" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.664" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.757" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.904" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25132" e_stop="25205" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.284" acc_prob="0.958">
            <gDNA_intron_boundary i_start="25206" i_stop="25289" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25290" e_stop="25402" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.797" acc_prob="0.947">
            <gDNA_intron_boundary i_start="25403" i_stop="26180" i_length="778"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26181" e_stop="26343" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26344" i_stop="26804" i_length="461"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26805" e_stop="26897" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.727" acc_prob="0.664">
            <gDNA_intron_boundary i_start="26898" i_stop="27077" i_length="180"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27078" e_stop="27163" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="0.757">
            <gDNA_intron_boundary i_start="27164" i_stop="32339" i_length="5176"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32340" e_stop="32426" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.904">
            <gDNA_intron_boundary i_start="32427" i_stop="36800" i_length="4374"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="36801" e_stop="36904" e_length="104"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25132" stop="25205"/>
              <exon start="25290" stop="25402"/>
              <exon start="26181" stop="26343"/>
              <exon start="26805" stop="26897"/>
              <exon start="27078" stop="27163"/>
              <exon start="32340" stop="32426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26292" stop="26343"/>
              <exon start="26805" stop="26897"/>
              <exon start="27078" stop="27163"/>
              <exon start="32340" stop="32426"/>
              <exon start="36801" stop="36904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311509" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGCAGGAGCTTCTCAAATTTTATAAAGAAAATTATTCAGCCAACTTAATGCATTTGGTTGTTTATGCAAAAG : ATTGCCTTGATAAAACTCAGACACTGGTACAGGGCATATTCCAAGAAGTTCCAAATACCAATAGAAGTTACTCCCCTGTTACTGATCAGCCTTGCAAATCAGAACATCTTCAG : ATTCTAGTCAGAGCTGTTCCAATAAAACAAGGTCATAGTTTGAGGCTTGAGTGGCCAATAATTCCAGACTTAGCTCATTACAAGGAAGGGCCTTCACTCTATTTGAGTCACTTGATTGGACATGAAGGAGAAGGATCCTTGTTTTATGTCTTAAAGAAGTTAG : GTTGGGCAACAAGCTTATCGGCTGGAGAGTCAGGCGGCGGTCATCACTTCTCCTTTTTTGAAGTTTATATTAGTCTGACTGATGCTGGGCATG : ACCATTTTGAGGATGTTGTGGCACTGGTCTTCAAATATATTCACCTTCTGCAACAAGCTGGTGCCCGCAAATGGATATTTGATGAG : CTTTCTGCTATATCTGAAACGAATTTCCATTATCAAGACAAGAGTTCTCCCATCGGTTATGTGGTATATGTTGCGTCGAACATGCAG : CTTTACCCGCCAATAGATTGGTTGGTTGGGTCATCTTTACCTTCAAAGTTCAGTCCAGACATTATTGAAGCAGTTCTAACTGATCTCACACCACAAAATGTCAG</gDNA_template>
            <first_frame> K  A  G  A  S  Q  I  L  *  R  K  L  F  S  Q  L  N  A  F  G  C  L  C  K  R :   L  P  *  *  N  S  D  T  G  T  G  H  I  P  R  S  S  K  Y  Q  *  K  L  L  P  C  Y  *  S  A  L  Q  I  R  T  S  S   : D  S  S  Q  S  C  S  N  K  T  R  S  *  F  E  A  *  V  A  N  N  S  R  L  S  S  L  Q  G  R  A  F  T  L  F  E  S  L  D  W  T  *  R  R  R  I  L  V  L  C  L  K  E  V  R :   L  G  N  K  L  I  G  W  R  V  R  R  R  S  S  L  L  L  F  *  S  L  Y  *  S  D  *  C  W  A  * :   P  F  *  G  C  C  G  T  G  L  Q  I  Y  S  P  S  A  T  S  W  C  P  Q  M  D  I  *  *   : A  F  C  Y  I  *  N  E  F  P  L  S  R  Q  E  F  S  H  R  L  C  G  I  C  C  V  E  H  A   : A  L  P  A  N  R  L  V  G  W  V  I  F  T  F  K  V  Q  S  R  H  Y  *  S  S  S  N  *  S  H  T  T  K  C  Q </first_frame>
            <second_frame>  R  Q  E  L  L  K  F  Y  K  E  N  Y  S  A  N  L  M  H  L  V  V  Y  A  K   : D  C  L  D  K  T  Q  T  L  V  Q  G  I  F  Q  E  V  P  N  T  N  R  S  Y  S  P  V  T  D  Q  P  C  K  S  E  H  L  Q  :  I  L  V  R  A  V  P  I  K  Q  G  H  S  L  R  L  E  W  P  I  I  P  D  L  A  H  Y  K  E  G  P  S  L  Y  L  S  H  L  I  G  H  E  G  E  G  S  L  F  Y  V  L  K  K  L   : G  W  A  T  S  L  S  A  G  E  S  G  G  G  H  H  F  S  F  F  E  V  Y  I  S  L  T  D  A  G  H   : D  H  F  E  D  V  V  A  L  V  F  K  Y  I  H  L  L  Q  Q  A  G  A  R  K  W  I  F  D  E  :  L  S  A  I  S  E  T  N  F  H  Y  Q  D  K  S  S  P  I  G  Y  V  V  Y  V  A  S  N  M  Q  :  L  Y  P  P  I  D  W  L  V  G  S  S  L  P  S  K  F  S  P  D  I  I  E  A  V  L  T  D  L  T  P  Q  N  V   </second_frame>
            <third_frame>   G  R  S  F  S  N  F  I  K  K  I  I  Q  P  T  *  C  I  W  L  F  M  Q  K  :  I  A  L  I  K  L  R  H  W  Y  R  A  Y  S  K  K  F  Q  I  P  I  E  V  T  P  L  L  L  I  S  L  A  N  Q  N  I  F  R :   F  *  S  E  L  F  Q  *  N  K  V  I  V  *  G  L  S  G  Q  *  F  Q  T  *  L  I  T  R  K  G  L  H  S  I  *  V  T  *  L  D  M  K  E  K  D  P  C  F  M  S  *  R  S  *  :  V  G  Q  Q  A  Y  R  L  E  S  Q  A  A  V  I  T  S  P  F  L  K  F  I  L  V  *  L  M  L  G  M  :  T  I  L  R  M  L  W  H  W  S  S  N  I  F  T  F  C  N  K  L  V  P  A  N  G  Y  L  M  S :   F  L  L  Y  L  K  R  I  S  I  I  K  T  R  V  L  P  S  V  M  W  Y  M  L  R  R  T  C  S :   F  T  R  Q  *  I  G  W  L  G  H  L  Y  L  Q  S  S  V  Q  T  L  L  K  Q  F  *  L  I  S  H  H  K  M  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25133" stop="25205"/>
                    <exon start="25290" stop="25402"/>
                    <exon start="26181" stop="26343"/>
                    <exon start="26805" stop="26897"/>
                    <exon start="27078" stop="27163"/>
                    <exon start="32340" stop="32426"/>
                    <exon start="36801" stop="36902"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQELLKFYKENYSANLMHLVVYAKDCLDKTQTLVQGIFQEVPNTNRSYSPVTDQPCKSEHLQILVRAVPIKQGHSLRLEWPIIPDLAHYKEGPSLYLSHLIGHEGEGSLFYVLKKLGWATSLSAGESGGGHHFSFFEVYISLTDAGHDHFEDVVALVFKYIHLLQQAGARKWIFDELSAISETNFHYQDKSSPIGYVVYVASNMQLYPPIDWLVGSSLPSKFSPDIIEAVLTDLTPQNV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="40248" PGL_stop="44069"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40248" e_stop="40394"/>
            <exon e_start="40478" e_stop="40686"/>
            <exon e_start="41430" e_stop="41554"/>
            <exon e_start="41671" e_stop="41722"/>
            <exon e_start="41820" e_stop="41906"/>
            <exon e_start="43221" e_stop="43343"/>
            <exon e_start="44002" e_stop="44069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.709" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40248" e_stop="40394" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.709">
            <gDNA_intron_boundary i_start="40395" i_stop="40477" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40478" e_stop="40686" e_length="209"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.892">
            <gDNA_intron_boundary i_start="40687" i_stop="41429" i_length="743"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41430" e_stop="41554" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41555" i_stop="41670" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41671" e_stop="41722" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41723" i_stop="41819" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41820" e_stop="41906" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.925">
            <gDNA_intron_boundary i_start="41907" i_stop="43220" i_length="1314"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43221" e_stop="43343" e_length="123"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="43344" i_stop="44001" i_length="658"/>
          </intron>
          <exon e_serial="7" e_score="0.941">
            <gDNA_exon_boundary e_start="44002" e_stop="44069" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40248" stop="40394"/>
              <exon start="40478" stop="40686"/>
              <exon start="41430" stop="41554"/>
              <exon start="41671" stop="41722"/>
              <exon start="41820" stop="41906"/>
              <exon start="43221" stop="43343"/>
              <exon start="44002" stop="44069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTGTACTACTGTTCATTAATACTTAGGGAACACTCATGGTCATGGGATGATGAATGTGAAGCTCTTACTAATCTTGAAATTGATGACCTTGTTAAATTTTATCCTCTGCTTCTATCAAGGACATTTCTGGAGTGTTATTTAGCAG : GAAACATCGACTCAAAGGAAGCAGTTTCAATGATCCAGCACGTTGAAGATGCCTTGTACAAGGGTTCCCAGCCTCTATCTCGGGCCCTTTTTGCGTCTGAGCATTCGTCAAGTAGAATTATAAATCTTGAAGAGAGCAAGAATTATTTCTATGCTGCAGAGGGCCTAAATACATCTGATGAAAATTCTGCTCTTGTCCACTACATTCAG : GTGCATTCAGATGAATACATCAAGAATGTAAAACTGCAGCTATTTGCTCTGATAGCCAAACAACCAGCTTTCGACCAGCTTAGATCTGTTGAGCAGCTTGGTTACATCACATCACTTTCACGGAC : GAGTGATGCTGGTGTTCGTGGACTGCAGCTTATAGTTCAATCATCGGTCAAG : GATCCTAGATATATCGAGTCGCGATTCCAGGCATTTCTTAAGACGTTGGAAACTCAGCTTCATGACATGTCAGATGATGAGTTTAAG : AAAAAAGTCAATGCTCTTATTGATATTAAGCTTGAGAAGTTTAAAAACTTACCGGAGGAAACCAATTTTTTCTGGTGGGAAATTTCTAGTGGCACCCTCAAATTTGATAGAATTGAAAATGAG : GTTGCAGCACTGAAGCAGATAACTAAAACGGACCTGATCGATTTCTTTAATGAATATGTGAACGTTGG</gDNA_template>
            <first_frame> L  C  T  T  V  H  *  Y  L  G  N  T  H  G  H  G  M  M  N  V  K  L  L  L  I  L  K  L  M  T  L  L  N  F  I  L  C  F  Y  Q  G  H  F  W  S  V  I  *  Q  :  E  T  S  T  Q  R  K  Q  F  Q  *  S  S  T  L  K  M  P  C  T  R  V  P  S  L  Y  L  G  P  F  L  R  L  S  I  R  Q  V  E  L  *  I  L  K  R  A  R  I  I  S  M  L  Q  R  A  *  I  H  L  M  K  I  L  L  L  S  T  T  F  R :   C  I  Q  M  N  T  S  R  M  *  N  C  S  Y  L  L  *  *  P  N  N  Q  L  S  T  S  L  D  L  L  S  S  L  V  T  S  H  H  F  H  G   : R  V  M  L  V  F  V  D  C  S  L  *  F  N  H  R  S  R :   I  L  D  I  S  S  R  D  S  R  H  F  L  R  R  W  K  L  S  F  M  T  C  Q  M  M  S  L  R :   K  K  S  M  L  L  L  I  L  S  L  R  S  L  K  T  Y  R  R  K  P  I  F  S  G  G  K  F  L  V  A  P  S  N  L  I  E  L  K  M  R :   L  Q  H  *  S  R  *  L  K  R  T  *  S  I  S  L  M  N  M  *  T  L  </first_frame>
            <second_frame>  F  V  L  L  F  I  N  T  *  G  T  L  M  V  M  G  *  *  M  *  S  S  Y  *  S  *  N  *  *  P  C  *  I  L  S  S  A  S  I  K  D  I  S  G  V  L  F  S  R :   K  H  R  L  K  G  S  S  F  N  D  P  A  R  *  R  C  L  V  Q  G  F  P  A  S  I  S  G  P  F  C  V  *  A  F  V  K  *  N  Y  K  S  *  R  E  Q  E  L  F  L  C  C  R  G  P  K  Y  I  *  *  K  F  C  S  C  P  L  H  S   : G  A  F  R  *  I  H  Q  E  C  K  T  A  A  I  C  S  D  S  Q  T  T  S  F  R  P  A  *  I  C  *  A  A  W  L  H  H  I  T  F  T  D  :  E  *  C  W  C  S  W  T  A  A  Y  S  S  I  I  G  Q   : G  S  *  I  Y  R  V  A  I  P  G  I  S  *  D  V  G  N  S  A  S  *  H  V  R  *  *  V  *   : E  K  S  Q  C  S  Y  *  Y  *  A  *  E  V  *  K  L  T  G  G  N  Q  F  F  L  V  G  N  F  *  W  H  P  Q  I  *  *  N  *  K  *   : G  C  S  T  E  A  D  N  *  N  G  P  D  R  F  L  *  *  I  C  E  R  W </second_frame>
            <third_frame>   L  Y  Y  C  S  L  I  L  R  E  H  S  W  S  W  D  D  E  C  E  A  L  T  N  L  E  I  D  D  L  V  K  F  Y  P  L  L  L  S  R  T  F  L  E  C  Y  L  A   : G  N  I  D  S  K  E  A  V  S  M  I  Q  H  V  E  D  A  L  Y  K  G  S  Q  P  L  S  R  A  L  F  A  S  E  H  S  S  S  R  I  I  N  L  E  E  S  K  N  Y  F  Y  A  A  E  G  L  N  T  S  D  E  N  S  A  L  V  H  Y  I  Q  :  V  H  S  D  E  Y  I  K  N  V  K  L  Q  L  F  A  L  I  A  K  Q  P  A  F  D  Q  L  R  S  V  E  Q  L  G  Y  I  T  S  L  S  R  T :   S  D  A  G  V  R  G  L  Q  L  I  V  Q  S  S  V  K  :  D  P  R  Y  I  E  S  R  F  Q  A  F  L  K  T  L  E  T  Q  L  H  D  M  S  D  D  E  F  K  :  K  K  V  N  A  L  I  D  I  K  L  E  K  F  K  N  L  P  E  E  T  N  F  F  W  W  E  I  S  S  G  T  L  K  F  D  R  I  E  N  E  :  V  A  A  L  K  Q  I  T  K  T  D  L  I  D  F  F  N  E  Y  V  N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40250" stop="40394"/>
                    <exon start="40478" stop="40686"/>
                    <exon start="41430" stop="41554"/>
                    <exon start="41671" stop="41722"/>
                    <exon start="41820" stop="41906"/>
                    <exon start="43221" stop="43343"/>
                    <exon start="44002" stop="44067"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>807</number_coding_nucleotides>
                  <number_encoded_amino_acids>269</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYYCSLILREHSWSWDDECEALTNLEIDDLVKFYPLLLSRTFLECYLAGNIDSKEAVSMIQHVEDALYKGSQPLSRALFASEHSSSRIINLEESKNYFYAAEGLNTSDENSALVHYIQVHSDEYIKNVKLQLFALIAKQPAFDQLRSVEQLGYITSLSRTSDAGVRGLQLIVQSSVKDPRYIESRFQAFLKTLETQLHDMSDDEFKKKVNALIDIKLEKFKNLPEETNFFWWEISSGTLKFDRIENEVAALKQITKTDLIDFFNEYVNV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="45666" PGL_stop="46328"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45666" e_stop="46328"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="45666" e_stop="46328" e_length="663"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45666" stop="46328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373312" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTTTTCTTGGAACTAAAACATCTTCAATCAAATAAAGTATTAAAATACTTTCAATTCATACAAACCCCCATATACACAAACTTGATCAACAAACAATCACATCCCAGACTTCACATAACTTTTACTTAAATCACTCATTTAATCTCTCTTTTTCTTTCTTTTCTATTCCTTCAAACCAATCAACCCAGCATATCATAAACAATATATACAATAATCACACAATAAAATAAGAATTTAACTTATATACGCTGATATCACGTATAAACACAAACTTGACACCGCAGTCCATTATATTCTCACTTTCAATCTTCACAAAAATGAGTATTCATAGTTCCGTACATACATAGACTTAGTCCAATGTGTGAACGATAAAATCTGCAGTGTCAACATGCATGGAAGCCTCGACACCATAACTCTCCATAGAGTTCGATTCTTGATTATGAGCAATAAACCCAAGTTTCTCTTTTTTACAACGACGAGGAAAATCTGAAGCATTGCCATGAATGTTGGAGGGTGGATGGTAATACATTCGAGCAGTCTGAGGGCAATGAGAATGAAACCTAGCTACTATTCTCACACCTACATCCACTATCTCCGTGTATTTACCCATGGATTATGTCTTTATTCACAATGCTTTGATGTATAAGAAAACTTGAACA</gDNA_template>
            <first_frame> N  F  F  L  G  T  K  T  S  S  I  K  *  S  I  K  I  L  S  I  H  T  N  P  H  I  H  K  L  D  Q  Q  T  I  T  S  Q  T  S  H  N  F  Y  L  N  H  S  F  N  L  S  F  S  F  F  S  I  P  S  N  Q  S  T  Q  H  I  I  N  N  I  Y  N  N  H  T  I  K  *  E  F  N  L  Y  T  L  I  S  R  I  N  T  N  L  T  P  Q  S  I  I  F  S  L  S  I  F  T  K  M  S  I  H  S  S  V  H  T  *  T  *  S  N  V  *  T  I  K  S  A  V  S  T  C  M  E  A  S  T  P  *  L  S  I  E  F  D  S  *  L  *  A  I  N  P  S  F  S  F  L  Q  R  R  G  K  S  E  A  L  P  *  M  L  E  G  G  W  *  Y  I  R  A  V  *  G  Q  *  E  *  N  L  A  T  I  L  T  P  T  S  T  I  S  V  Y  L  P  M  D  Y  V  F  I  H  N  A  L  M  Y  K  K  T  *  T </first_frame>
            <second_frame>  I  F  F  L  E  L  K  H  L  Q  S  N  K  V  L  K  Y  F  Q  F  I  Q  T  P  I  Y  T  N  L  I  N  K  Q  S  H  P  R  L  H  I  T  F  T  *  I  T  H  L  I  S  L  F  L  S  F  L  F  L  Q  T  N  Q  P  S  I  S  *  T  I  Y  T  I  I  T  Q  *  N  K  N  L  T  Y  I  R  *  Y  H  V  *  T  Q  T  *  H  R  S  P  L  Y  S  H  F  Q  S  S  Q  K  *  V  F  I  V  P  Y  I  H  R  L  S  P  M  C  E  R  *  N  L  Q  C  Q  H  A  W  K  P  R  H  H  N  S  P  *  S  S  I  L  D  Y  E  Q  *  T  Q  V  S  L  F  Y  N  D  E  E  N  L  K  H  C  H  E  C  W  R  V  D  G  N  T  F  E  Q  S  E  G  N  E  N  E  T  *  L  L  F  S  H  L  H  P  L  S  P  C  I  Y  P  W  I  M  S  L  F  T  M  L  *  C  I  R  K  L  E   </second_frame>
            <third_frame>   F  F  S  W  N  *  N  I  F  N  Q  I  K  Y  *  N  T  F  N  S  Y  K  P  P  Y  T  Q  T  *  S  T  N  N  H  I  P  D  F  T  *  L  L  L  K  S  L  I  *  S  L  F  F  F  L  F  Y  S  F  K  P  I  N  P  A  Y  H  K  Q  Y  I  Q  *  S  H  N  K  I  R  I  *  L  I  Y  A  D  I  T  Y  K  H  K  L  D  T  A  V  H  Y  I  L  T  F  N  L  H  K  N  E  Y  S  *  F  R  T  Y  I  D  L  V  Q  C  V  N  D  K  I  C  S  V  N  M  H  G  S  L  D  T  I  T  L  H  R  V  R  F  L  I  M  S  N  K  P  K  F  L  F  F  T  T  T  R  K  I  *  S  I  A  M  N  V  G  G  W  M  V  I  H  S  S  S  L  R  A  M  R  M  K  P  S  Y  Y  S  H  T  Y  I  H  Y  L  R  V  F  T  H  G  L  C  L  Y  S  Q  C  F  D  V  *  E  N  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45705" stop="45899"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIKILSIHTNPHIHKLDQQTITSQTSHNFYLNHSFNLSFSFFSIPSNQSTQHIINNIYNNHTIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="46327" PGL_stop="45735"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46327" e_stop="45735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46327" e_stop="45735" e_length="593"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46327" stop="45735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46327" stop="46103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCAAGTTTTCTTATACATCAAAGCATTGTGAATAAAGACATAATCCATGGGTAAATACACGGAGATAGTGGATGTAGGTGTGAGAATAGTAGCTAGGTTTCATTCTCATTGCCCTCAGACTGCTCGAATGTATTACCATCCACCCTCCAACATTCATGGCAATGCTTCAGATTTTCCTCGTCGTTGTAAAAAAGAGAAACTTGGGTTTATTGCTCATAATCAAGAATCGAACTCTATGGAGAGTTATGGTGTCGAGGCTTCCATGCATGTTGACACTGCAGATTTTATCGTTCACACATTGGACTAAGTCTATGTATGTACGGAACTATGAATACTCATTTTTGTGAAGATTGAAAGTGAGAATATAATGGACTGCGGTGTCAAGTTTGTGTTTATACGTGATATCAGCGTATATAAGTTAAATTCTTATTTTATTGTGTGATTATTGTATATATTGTTTATGATATGCTGGGTTGATTGGTTTGAAGGAATAGAAAAGAAAGAAAAAGAGAGATTAAATGAGTGATTTAAGTAAAAGTTATGTGAAGTCTGGGATGTGATTGTTTGTTGATCAAGTTTGTGTATATGGGG</gDNA_template>
            <first_frame> V  Q  V  F  L  Y  I  K  A  L  *  I  K  T  *  S  M  G  K  Y  T  E  I  V  D  V  G  V  R  I  V  A  R  F  H  S  H  C  P  Q  T  A  R  M  Y  Y  H  P  P  S  N  I  H  G  N  A  S  D  F  P  R  R  C  K  K  E  K  L  G  F  I  A  H  N  Q  E  S  N  S  M  E  S  Y  G  V  E  A  S  M  H  V  D  T  A  D  F  I  V  H  T  L  D  *  V  Y  V  C  T  E  L  *  I  L  I  F  V  K  I  E  S  E  N  I  M  D  C  G  V  K  F  V  F  I  R  D  I  S  V  Y  K  L  N  S  Y  F  I  V  *  L  L  Y  I  L  F  M  I  C  W  V  D  W  F  E  G  I  E  K  K  E  K  E  R  L  N  E  *  F  K  *  K  L  C  E  V  W  D  V  I  V  C  *  S  S  L  C  I  W   </first_frame>
            <second_frame>  F  K  F  S  Y  T  S  K  H  C  E  *  R  H  N  P  W  V  N  T  R  R  *  W  M  *  V  *  E  *  *  L  G  F  I  L  I  A  L  R  L  L  E  C  I  T  I  H  P  P  T  F  M  A  M  L  Q  I  F  L  V  V  V  K  K  R  N  L  G  L  L  L  I  I  K  N  R  T  L  W  R  V  M  V  S  R  L  P  C  M  L  T  L  Q  I  L  S  F  T  H  W  T  K  S  M  Y  V  R  N  Y  E  Y  S  F  L  *  R  L  K  V  R  I  *  W  T  A  V  S  S  L  C  L  Y  V  I  S  A  Y  I  S  *  I  L  I  L  L  C  D  Y  C  I  Y  C  L  *  Y  A  G  L  I  G  L  K  E  *  K  R  K  K  K  R  D  *  M  S  D  L  S  K  S  Y  V  K  S  G  M  *  L  F  V  D  Q  V  C  V  Y  G  </second_frame>
            <third_frame>   S  S  F  L  I  H  Q  S  I  V  N  K  D  I  I  H  G  *  I  H  G  D  S  G  C  R  C  E  N  S  S  *  V  S  F  S  L  P  S  D  C  S  N  V  L  P  S  T  L  Q  H  S  W  Q  C  F  R  F  S  S  S  L  *  K  R  E  T  W  V  Y  C  S  *  S  R  I  E  L  Y  G  E  L  W  C  R  G  F  H  A  C  *  H  C  R  F  Y  R  S  H  I  G  L  S  L  C  M  Y  G  T  M  N  T  H  F  C  E  D  *  K  *  E  Y  N  G  L  R  C  Q  V  C  V  Y  T  *  Y  Q  R  I  *  V  K  F  L  F  Y  C  V  I  I  V  Y  I  V  Y  D  M  L  G  *  L  V  *  R  N  R  K  E  R  K  R  E  I  K  *  V  I  *  V  K  V  M  *  S  L  G  C  D  C  L  L  I  K  F  V  Y  M  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46282" stop="46019"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMGKYTEIVDVGVRIVARFHSHCPQTARMYYHPPSNIHGNASDFPRRCKKEKLGFIAHNQESNSMESYGVEASMHVDTADFIVHTLD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46233" stop="45979"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGFILIALRLLECITIHPPTFMAMLQIFLVVVKKRNLGLLLIIKNRTLWRVMVSRLPCMLTLQILSFTHWTKSMYVRNYEYSFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="67329" PGL_stop="67835"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67329" e_stop="67835"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67329" e_stop="67835" e_length="507"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67329" stop="67835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATCTTTAACACTTGAGTTCAAGAACTCAAAAAGAACATAAAGCTCTCATTTTTACTCTTGTGTGTGTGTAAAATTGAGGTTGTGGGGTTTCAATGTTAGTCCAAGATCGTGAAGATGGTATTTCTAAATCACCAAAAGGACCAAAACCCATTAGAGAAAGATCATCAATCCCTCTATCAAGAACCCCAAATCGTTTAAATGGAGCCAAGAATCTTGATTTTTCTACATGGGTTTCTGAAAATCTTTACAAAATCCTCACCATTTTGCTCTTAATCTCTACCATTGCTATTTTCTTCTACCTTCGTAGTGCTGCTGGTGATACCACTACTCTCCTTTGCTTACAGTCAACTCAAACTCACTCCATCAGACCTGAGTTCCCTAAAATCAACTGGAATAACATTCCAGCTATCTTAGATAAGTCTACTCCTTATGCAAATTTTCGATCTGAGAAATGGGTTGTGGTTTCTGTTTCAGATTACCCGTCGGATTCGCTTAGAAAGCTTG</gDNA_template>
            <first_frame> R  I  F  N  T  *  V  Q  E  L  K  K  N  I  K  L  S  F  L  L  L  C  V  C  K  I  E  V  V  G  F  Q  C  *  S  K  I  V  K  M  V  F  L  N  H  Q  K  D  Q  N  P  L  E  K  D  H  Q  S  L  Y  Q  E  P  Q  I  V  *  M  E  P  R  I  L  I  F  L  H  G  F  L  K  I  F  T  K  S  S  P  F  C  S  *  S  L  P  L  L  F  S  S  T  F  V  V  L  L  V  I  P  L  L  S  F  A  Y  S  Q  L  K  L  T  P  S  D  L  S  S  L  K  S  T  G  I  T  F  Q  L  S  *  I  S  L  L  L  M  Q  I  F  D  L  R  N  G  L  W  F  L  F  Q  I  T  R  R  I  R  L  E  S  L </first_frame>
            <second_frame>  E  S  L  T  L  E  F  K  N  S  K  R  T  *  S  S  H  F  Y  S  C  V  C  V  K  L  R  L  W  G  F  N  V  S  P  R  S  *  R  W  Y  F  *  I  T  K  R  T  K  T  H  *  R  K  I  I  N  P  S  I  K  N  P  K  S  F  K  W  S  Q  E  S  *  F  F  Y  M  G  F  *  K  S  L  Q  N  P  H  H  F  A  L  N  L  Y  H  C  Y  F  L  L  P  S  *  C  C  W  *  Y  H  Y  S  P  L  L  T  V  N  S  N  S  L  H  Q  T  *  V  P  *  N  Q  L  E  *  H  S  S  Y  L  R  *  V  Y  S  L  C  K  F  S  I  *  E  M  G  C  G  F  C  F  R  L  P  V  G  F  A  *  K  A   </second_frame>
            <third_frame>   N  L  *  H  L  S  S  R  T  Q  K  E  H  K  A  L  I  F  T  L  V  C  V  *  N  *  G  C  G  V  S  M  L  V  Q  D  R  E  D  G  I  S  K  S  P  K  G  P  K  P  I  R  E  R  S  S  I  P  L  S  R  T  P  N  R  L  N  G  A  K  N  L  D  F  S  T  W  V  S  E  N  L  Y  K  I  L  T  I  L  L  L  I  S  T  I  A  I  F  F  Y  L  R  S  A  A  G  D  T  T  T  L  L  C  L  Q  S  T  Q  T  H  S  I  R  P  E  F  P  K  I  N  W  N  N  I  P  A  I  L  D  K  S  T  P  Y  A  N  F  R  S  E  K  W  V  V  V  S  V  S  D  Y  P  S  D  S  L  R  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67409" stop="67834"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCGVSMLVQDREDGISKSPKGPKPIRERSSIPLSRTPNRLNGAKNLDFSTWVSENLYKILTILLLISTIAIFFYLRSAAGDTTTLLCLQSTQTHSIRPEFPKINWNNIPAILDKSTPYANFRSEKWVVVSVSDYPSDSLRKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="68655" PGL_stop="72538"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68655" e_stop="69144"/>
            <exon e_start="70869" e_stop="70995"/>
            <exon e_start="71803" e_stop="72538"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.852" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68655" e_stop="69144" e_length="490"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69145" i_stop="70868" i_length="1724"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70869" e_stop="70995" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.852">
            <gDNA_intron_boundary i_start="70996" i_stop="71802" i_length="807"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="71803" e_stop="72538" e_length="736"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68655" stop="69144"/>
              <exon start="70869" stop="70995"/>
              <exon start="71803" stop="71894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68656" stop="69144"/>
              <exon start="70869" stop="70904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70944" stop="70995"/>
              <exon start="71803" stop="72538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549066" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTAACAAAGTTTTTGGTAGCGTGGAGATCCAGTAAACACAGGTTGTTTGAAAAGATTTTGGAGTTAAGCTATGCAATGGCTGAAGAAGGCTTTTGGACAGTGCAAGATGTCAAGTTCACTGCTGCATGGCTTCAAGATCTGCTTGCTGTTGGGTACATGCAGCCTCGGCTAATGGCTTTAGAGTTGGATCGGCCAAGGGCAAGCATAGGACATGGTGACAGGAAGGAATTTGTACCTCAGAAGTTGCCATCTGTGCATCTTGGGGTAGAAGAGATTGGTACAGTGAATTATGAAATCGCCAATTTGATTAAGTGGAGGAAGAATTTTGGCAATGTTGTGCTCATAATCTTTTGTAGTGGACCTGTTGAACGTACTGCCTTGGAGTGGAGATTACTATATGGCAGGATATTTAAGACAGTTATCATATTGTCTGACCAGAAGAATGTAGATCTTGCCGTTGAAAAAGGAAATTTGGATTATATGTACAG : GTATGCACCAAAGATACTTGATAGGTACACTAGTGCAGAAGGCTTTCTATTTCTCCAGGACGATACTATCCTTAATTACTGGAACTTACTTCAAGCAGATAAGTCAAAGCTCTGGATAGGAAACAAG : GTATCCAAGTCATGGCACGCTGTTCCAGTAGCTAACAAATCGGACTGGTTTGTGAAGCAAGCTGACGTTGTTAAGAAAGTGGTAGCAACAATGCCGGTACATTTGCAAGTCAATTACAAAGAGACAATGAGAAGTGACGAGACCTTGACGATATGCAGTTCGGAGATATTCTACATACCCCGTCGTTTTGTATCCGACTTTGTCGACCTCATTAATCTAGTAGGGAATCTAGACGTGCATCACAAGGTTGCAATGCCAATGTTTTTTACGGCTATGGATTCTCCACAGAATTTCGATTCAGTATTGAATTCGATGATTTACAAGAAGAAGTCTCCTGGCAATTTAACGACATTCTATTCAGCTGAGGCACCTGCAATTCACCCATGGAAAGTGTCAAGTGAGCAAGAGTTCATAAAACTGATCAGAGTTATGGCTGCAGGTGACCCCCTGTTAATGGAGTTGGTATAGTGTAATGATAGATACTTGAAGAGTCTCACAGTGAAAATGTAAAACATGTAAAGTTTATGTGCAGCTGAATTCTACTATTCTTTTGTACCTTTCATTAGTAGGGGGGGAATGGGGTGAAAGAAGAGGTTTTGTGCTCTTGTAGATTTTTGTTGTAATACTGTTTTAACTCTTAAAAATTTTGTGGCAAAGAGAATTGAAGGAGAAAACAGTGCAGGCTTTCTTCTGATTTTCATTTTGCTTTTGAATACGTTTTGTTTCTACAGAGAAA</gDNA_template>
            <first_frame> V  *  Q  S  F  W  *  R  G  D  P  V  N  T  G  C  L  K  R  F  W  S  *  A  M  Q  W  L  K  K  A  F  G  Q  C  K  M  S  S  S  L  L  H  G  F  K  I  C  L  L  L  G  T  C  S  L  G  *  W  L  *  S  W  I  G  Q  G  Q  A  *  D  M  V  T  G  R  N  L  Y  L  R  S  C  H  L  C  I  L  G  *  K  R  L  V  Q  *  I  M  K  S  P  I  *  L  S  G  G  R  I  L  A  M  L  C  S  *  S  F  V  V  D  L  L  N  V  L  P  W  S  G  D  Y  Y  M  A  G  Y  L  R  Q  L  S  Y  C  L  T  R  R  M  *  I  L  P  L  K  K  E  I  W  I  I  C  T   : G  M  H  Q  R  Y  L  I  G  T  L  V  Q  K  A  F  Y  F  S  R  T  I  L  S  L  I  T  G  T  Y  F  K  Q  I  S  Q  S  S  G  *  E  T  R :   Y  P  S  H  G  T  L  F  Q  *  L  T  N  R  T  G  L  *  S  K  L  T  L  L  R  K  W  *  Q  Q  C  R  Y  I  C  K  S  I  T  K  R  Q  *  E  V  T  R  P  *  R  Y  A  V  R  R  Y  S  T  Y  P  V  V  L  Y  P  T  L  S  T  S  L  I  *  *  G  I  *  T  C  I  T  R  L  Q  C  Q  C  F  L  R  L  W  I  L  H  R  I  S  I  Q  Y  *  I  R  *  F  T  R  R  S  L  L  A  I  *  R  H  S  I  Q  L  R  H  L  Q  F  T  H  G  K  C  Q  V  S  K  S  S  *  N  *  S  E  L  W  L  Q  V  T  P  C  *  W  S  W  Y  S  V  M  I  D  T  *  R  V  S  Q  *  K  C  K  T  C  K  V  Y  V  Q  L  N  S  T  I  L  L  Y  L  S  L  V  G  G  E  W  G  E  R  R  G  F  V  L  L  *  I  F  V  V  I  L  F  *  L  L  K  I  L  W  Q  R  E  L  K  E  K  T  V  Q  A  F  F  *  F  S  F  C  F  *  I  R  F  V  S  T  E  K </first_frame>
            <second_frame>  F  N  K  V  F  G  S  V  E  I  Q  *  T  Q  V  V  *  K  D  F  G  V  K  L  C  N  G  *  R  R  L  L  D  S  A  R  C  Q  V  H  C  C  M  A  S  R  S  A  C  C  W  V  H  A  A  S  A  N  G  F  R  V  G  S  A  K  G  K  H  R  T  W  *  Q  E  G  I  C  T  S  E  V  A  I  C  A  S  W  G  R  R  D  W  Y  S  E  L  *  N  R  Q  F  D  *  V  E  E  E  F  W  Q  C  C  A  H  N  L  L  *  W  T  C  *  T  Y  C  L  G  V  E  I  T  I  W  Q  D  I  *  D  S  Y  H  I  V  *  P  E  E  C  R  S  C  R  *  K  R  K  F  G  L  Y  V  Q  :  V  C  T  K  D  T  *  *  V  H  *  C  R  R  L  S  I  S  P  G  R  Y  Y  P  *  L  L  E  L  T  S  S  R  *  V  K  A  L  D  R  K  Q   : G  I  Q  V  M  A  R  C  S  S  S  *  Q  I  G  L  V  C  E  A  S  *  R  C  *  E  S  G  S  N  N  A  G  T  F  A  S  Q  L  Q  R  D  N  E  K  *  R  D  L  D  D  M  Q  F  G  D  I  L  H  T  P  S  F  C  I  R  L  C  R  P  H  *  S  S  R  E  S  R  R  A  S  Q  G  C  N  A  N  V  F  Y  G  Y  G  F  S  T  E  F  R  F  S  I  E  F  D  D  L  Q  E  E  V  S  W  Q  F  N  D  I  L  F  S  *  G  T  C  N  S  P  M  E  S  V  K  *  A  R  V  H  K  T  D  Q  S  Y  G  C  R  *  P  P  V  N  G  V  G  I  V  *  *  *  I  L  E  E  S  H  S  E  N  V  K  H  V  K  F  M  C  S  *  I  L  L  F  F  C  T  F  H  *  *  G  G  N  G  V  K  E  E  V  L  C  S  C  R  F  L  L  *  Y  C  F  N  S  *  K  F  C  G  K  E  N  *  R  R  K  Q  C  R  L  S  S  D  F  H  F  A  F  E  Y  V  L  F  L  Q  R   </second_frame>
            <third_frame>   L  T  K  F  L  V  A  W  R  S  S  K  H  R  L  F  E  K  I  L  E  L  S  Y  A  M  A  E  E  G  F  W  T  V  Q  D  V  K  F  T  A  A  W  L  Q  D  L  L  A  V  G  Y  M  Q  P  R  L  M  A  L  E  L  D  R  P  R  A  S  I  G  H  G  D  R  K  E  F  V  P  Q  K  L  P  S  V  H  L  G  V  E  E  I  G  T  V  N  Y  E  I  A  N  L  I  K  W  R  K  N  F  G  N  V  V  L  I  I  F  C  S  G  P  V  E  R  T  A  L  E  W  R  L  L  Y  G  R  I  F  K  T  V  I  I  L  S  D  Q  K  N  V  D  L  A  V  E  K  G  N  L  D  Y  M  Y  R :   Y  A  P  K  I  L  D  R  Y  T  S  A  E  G  F  L  F  L  Q  D  D  T  I  L  N  Y  W  N  L  L  Q  A  D  K  S  K  L  W  I  G  N  K  :  V  S  K  S  W  H  A  V  P  V  A  N  K  S  D  W  F  V  K  Q  A  D  V  V  K  K  V  V  A  T  M  P  V  H  L  Q  V  N  Y  K  E  T  M  R  S  D  E  T  L  T  I  C  S  S  E  I  F  Y  I  P  R  R  F  V  S  D  F  V  D  L  I  N  L  V  G  N  L  D  V  H  H  K  V  A  M  P  M  F  F  T  A  M  D  S  P  Q  N  F  D  S  V  L  N  S  M  I  Y  K  K  K  S  P  G  N  L  T  T  F  Y  S  A  E  A  P  A  I  H  P  W  K  V  S  S  E  Q  E  F  I  K  L  I  R  V  M  A  A  G  D  P  L  L  M  E  L  V  *  C  N  D  R  Y  L  K  S  L  T  V  K  M  *  N  M  *  S  L  C  A  A  E  F  Y  Y  S  F  V  P  F  I  S  R  G  G  M  G  *  K  K  R  F  C  A  L  V  D  F  C  C  N  T  V  L  T  L  K  N  F  V  A  K  R  I  E  G  E  N  S  A  G  F  L  L  I  F  I  L  L  L  N  T  F  C  F  Y  R  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68657" stop="69144"/>
                    <exon start="70869" stop="70995"/>
                    <exon start="71803" stop="72270"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1080</number_coding_nucleotides>
                  <number_encoded_amino_acids>360</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTKFLVAWRSSKHRLFEKILELSYAMAEEGFWTVQDVKFTAAWLQDLLAVGYMQPRLMALELDRPRASIGHGDRKEFVPQKLPSVHLGVEEIGTVNYEIANLIKWRKNFGNVVLIIFCSGPVERTALEWRLLYGRIFKTVIILSDQKNVDLAVEKGNLDYMYRYAPKILDRYTSAEGFLFLQDDTILNYWNLLQADKSKLWIGNKVSKSWHAVPVANKSDWFVKQADVVKKVVATMPVHLQVNYKETMRSDETLTICSSEIFYIPRRFVSDFVDLINLVGNLDVHHKVAMPMFFTAMDSPQNFDSVLNSMIYKKKSPGNLTTFYSAEAPAIHPWKVSSEQEFIKLIRVMAAGDPLLMELV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71340" e_stop="72029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="71340" e_stop="72029" e_length="690"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71340" stop="72029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGAAGAATAAGAAACTCCGACTACTAACTACTACTAGTCTACTACTACTAGTAGCAGGGGAGTAGATGAGGCTATCCCCCTGCCTCTCCCACATGAAGTGCGGTAACACTCGGCTACCTACTAACCGTCTACTCTAATCATTGACATCCAGTACATATGTAGAATAATATATGTAAGGTTCTTTATTTCTTTATTCGGCTTGGAGAGGAGATAATGTATATGAAACCCGAGACCATCGTCATGAGGAAAGAGTTCCATCCTATGATATGTTTAGACATAGCTTGAGTTTTTTACTTGTGGTTAAAGCGCACTTGCTTGATCATCCAACTGCCTCCAGGGAGAGAGGGAAAAGGGATTTTTTTTGTAAGTTCTTAATTTATTGTTGCAAATGATCAACTCTCAAACCTGTCCTACCCAAATACACAAGCAATAGGCGTCTCATTTCTTTCTTTTGCGTATAGGTATCCAAGTCATGGCACGCTGTTCCAGTAGCTAACAAATCGGACTGGTTTGTGAAGCAAGCTGACGTTGTTAAGAAAGTGGTAGCAACAATGCCGGTACATTTGCAAGTCAATTACAAAGAGACAATGAGAAGTGACGAGACCTTGACGATATGCAGTTCGGAGATATTCTACATACCCCGTCGTTTTGTATCCGACTTTGTCGACCTCATTAATCTAGTAGGGAA</gDNA_template>
            <first_frame> I  E  E  *  E  T  P  T  T  N  Y  Y  *  S  T  T  T  S  S  R  G  V  D  E  A  I  P  L  P  L  P  H  E  V  R  *  H  S  A  T  Y  *  P  S  T  L  I  I  D  I  Q  Y  I  C  R  I  I  Y  V  R  F  F  I  S  L  F  G  L  E  R  R  *  C  I  *  N  P  R  P  S  S  *  G  K  S  S  I  L  *  Y  V  *  T  *  L  E  F  F  T  C  G  *  S  A  L  A  *  S  S  N  C  L  Q  G  E  R  E  K  G  F  F  L  *  V  L  N  L  L  L  Q  M  I  N  S  Q  T  C  P  T  Q  I  H  K  Q  *  A  S  H  F  F  L  L  R  I  G  I  Q  V  M  A  R  C  S  S  S  *  Q  I  G  L  V  C  E  A  S  *  R  C  *  E  S  G  S  N  N  A  G  T  F  A  S  Q  L  Q  R  D  N  E  K  *  R  D  L  D  D  M  Q  F  G  D  I  L  H  T  P  S  F  C  I  R  L  C  R  P  H  *  S  S  R  E </first_frame>
            <second_frame>  L  K  N  K  K  L  R  L  L  T  T  T  S  L  L  L  L  V  A  G  E  *  M  R  L  S  P  C  L  S  H  M  K  C  G  N  T  R  L  P  T  N  R  L  L  *  S  L  T  S  S  T  Y  V  E  *  Y  M  *  G  S  L  F  L  Y  S  A  W  R  G  D  N  V  Y  E  T  R  D  H  R  H  E  E  R  V  P  S  Y  D  M  F  R  H  S  L  S  F  L  L  V  V  K  A  H  L  L  D  H  P  T  A  S  R  E  R  G  K  R  D  F  F  C  K  F  L  I  Y  C  C  K  *  S  T  L  K  P  V  L  P  K  Y  T  S  N  R  R  L  I  S  F  F  C  V  *  V  S  K  S  W  H  A  V  P  V  A  N  K  S  D  W  F  V  K  Q  A  D  V  V  K  K  V  V  A  T  M  P  V  H  L  Q  V  N  Y  K  E  T  M  R  S  D  E  T  L  T  I  C  S  S  E  I  F  Y  I  P  R  R  F  V  S  D  F  V  D  L  I  N  L  V  G   </second_frame>
            <third_frame>   *  R  I  R  N  S  D  Y  *  L  L  L  V  Y  Y  Y  *  *  Q  G  S  R  *  G  Y  P  P  A  S  P  T  *  S  A  V  T  L  G  Y  L  L  T  V  Y  S  N  H  *  H  P  V  H  M  *  N  N  I  C  K  V  L  Y  F  F  I  R  L  G  E  E  I  M  Y  M  K  P  E  T  I  V  M  R  K  E  F  H  P  M  I  C  L  D  I  A  *  V  F  Y  L  W  L  K  R  T  C  L  I  I  Q  L  P  P  G  R  E  G  K  G  I  F  F  V  S  S  *  F  I  V  A  N  D  Q  L  S  N  L  S  Y  P  N  T  Q  A  I  G  V  S  F  L  S  F  A  Y  R  Y  P  S  H  G  T  L  F  Q  *  L  T  N  R  T  G  L  *  S  K  L  T  L  L  R  K  W  *  Q  Q  C  R  Y  I  C  K  S  I  T  K  R  Q  *  E  V  T  R  P  *  R  Y  A  V  R  R  Y  S  T  Y  P  V  V  L  Y  P  T  L  S  T  S  L  I  *  *  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71803" stop="72027"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSKSWHAVPVANKSDWFVKQADVVKKVVATMPVHLQVNYKETMRSDETLTICSSEIFYIPRRFVSDFVDLINLVG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71518" stop="71733"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLFLYSAWRGDNVYETRDHRHEERVPSYDMFRHSLSFLLVVKAHLLDHPTASRERGKRDFFCKFLIYCCK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="75522" PGL_stop="72496"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75522" e_stop="74208"/>
            <exon e_start="74109" e_stop="73633"/>
            <exon e_start="73531" e_stop="72949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.999"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="75522" e_stop="74208" e_length="1315"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74109" e_stop="73633" e_length="477"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73531" e_stop="72949" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75522" stop="74865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75231" stop="74629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75081" stop="74214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75052" stop="74208"/>
              <exon start="74109" stop="74059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75037" stop="74593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74993" stop="74494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74981" stop="74208"/>
              <exon start="74109" stop="73991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74933" stop="74208"/>
              <exon start="74109" stop="73966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74920" stop="74282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74770" stop="74208"/>
              <exon start="74109" stop="73926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74486" stop="74208"/>
              <exon start="74109" stop="73633"/>
              <exon start="73531" stop="73516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74409" stop="74208"/>
              <exon start="74109" stop="73633"/>
              <exon start="73531" stop="73405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74332" stop="74208"/>
              <exon start="74109" stop="73633"/>
              <exon start="73531" stop="73282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74323" stop="74208"/>
              <exon start="74109" stop="73646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74323" stop="74208"/>
              <exon start="74109" stop="73854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74308" stop="74208"/>
              <exon start="74109" stop="73728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74296" stop="74208"/>
              <exon start="74109" stop="73717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74093" stop="73633"/>
              <exon start="73531" stop="73114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74089" stop="73633"/>
              <exon start="73531" stop="73071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74088" stop="73633"/>
              <exon start="73531" stop="73204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74064" stop="73760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73953" stop="73633"/>
              <exon start="73531" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73936" stop="73633"/>
              <exon start="73531" stop="72955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73936" stop="73633"/>
              <exon start="73531" stop="73054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73913" stop="73633"/>
              <exon start="73531" stop="72985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73910" stop="73633"/>
              <exon start="73531" stop="72972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539545" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73910" stop="73633"/>
              <exon start="73531" stop="72985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73895" stop="73633"/>
              <exon start="73531" stop="72999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73859" stop="73633"/>
              <exon start="73531" stop="73382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73835" stop="73633"/>
              <exon start="73531" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73818" stop="73633"/>
              <exon start="73531" stop="73395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73684" stop="73633"/>
              <exon start="73531" stop="72958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73677" stop="73633"/>
              <exon start="73531" stop="73339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73523" stop="72972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73504" stop="72958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73504" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73488" stop="72949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73485" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239125" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73483" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239212" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73476" stop="72964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73476" stop="72964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73462" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239311" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73398" stop="73044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73358" stop="72967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73319" stop="72972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232432" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73318" stop="72980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234226" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATGCAGTTCTCCACTTTGGTACTCATGGTTCTCTTGAGTTCATGCCAGGAAAACAGGTGGGAATGAGCGATGCATGTTTCCCAGATAGTCTCATTGGAAACATTCCAAATGTCTATTACTATGCAGCAAACAATCCATCCGAAGCAACTATTGCCAAACGAAGGAGTTATGCAAATACCATTAGCTACTTGACTCCCCCTGCTGAGAATGCCGGACTCTACAAGGGACTCAAGCAGCTTAGTGAGCTCATTGCTTCGTACCAATCACTGAAAGACTCAGGTCGTGGCCCTCAGATTGTGAGCTCTATCATTAGTACTGCTAGACAGTGTAATCTTGACAAGGACGTTGATCTTCCAGATGAAGAGAAGGAAATAGATGCCAAAGAACGTGACCTTGTGGTAGGAAAAGTATATGCTAAGATTATGGAGATTGAGTCTCGTCTTCTGCCCTGTGGACTTCACATCATTGGTGAACCTCCAACCGCCATGGAGGCAGTTGCCACTCTTGTCAACATTGCTGCATTGGACCGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG : ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG : GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAATTTGATCTTGAAAGTTGCAACT</gDNA_template>
            <first_frame> *  C  S  S  P  L  W  Y  S  W  F  S  *  V  H  A  R  K  T  G  G  N  E  R  C  M  F  P  R  *  S  H  W  K  H  S  K  C  L  L  L  C  S  K  Q  S  I  R  S  N  Y  C  Q  T  K  E  L  C  K  Y  H  *  L  L  D  S  P  C  *  E  C  R  T  L  Q  G  T  Q  A  A  *  *  A  H  C  F  V  P  I  T  E  R  L  R  S  W  P  S  D  C  E  L  Y  H  *  Y  C  *  T  V  *  S  *  Q  G  R  *  S  S  R  *  R  E  G  N  R  C  Q  R  T  *  P  C  G  R  K  S  I  C  *  D  Y  G  D  *  V  S  S  S  A  L  W  T  S  H  H  W  *  T  S  N  R  H  G  G  S  C  H  S  C  Q  H  C  C  I  G  P  C  *  R  *  Y  F  F  P  S  I  Y  S  G  C  H  S  W  Q  K  Y  *  G  D  L  S  R  K  *  Q  W  S  L  A  R  C  G  A  A  S  S  N  Y  *  G  I  T  W  S  N  I  S  L  R  *  T  L  N  Q  Q  Q  G  S  G  C  *  Q  F  *  Q  A  D  L  T  P  W  F  F  Y  *  *  T  M  D  P  V  F  I  K  H  P  I  L  Q  S  *  *  G  K  A  Q  S  P  V  S  V  L  G  R  V  S  E  A  N  C  G  *  *  R  G  G  K  F  E  T  G  S  *  R  E  I  C  *  T  R  S  W  R  G  S  N  Q  K  S  E  S  F  A  Y  R  E  K  H  P  C  F  G  P  T  G  Y  S  H  N  S  S  T  A  E  R  Q  D  S  G  *  K  I  V  G  E  A  K  D  *  Q  R  G  Q  V  P  G  N  C  C  S  G  A  L  G  N  R  *  H  Q  D  L  W  R  V  V  G  T  G  Y  V  D  D  W  C  *  A  S  C  R  H  T  W  T  R  *  P  S  G  T  S  *  S  *  R  A  W  K  A  *  S  *  C  C  C  Q  L  L  R  G  V  Q  G  S  L  H  Q  S   : D  E  S  P  *  P  R  N  Q  D  G  C  *  A  *  *  T  G  R  P  K  L  C  Q  E  T  C  T  R  T  G  K  N  T  R  N  *  C  S  *  S  S  Y  *  G  L  L  K  R  F  G  F  L  L  F  Q  H  Q  P  S  C  *  E  L  I  M  E  R  R  E  A  T  S  R  H  V  L  E  P  K  V  I  C  I  *  L  *  C  S  W  C  W  H  D  G  E  E  E  S  F  *  D  G  S  K  H  S  *  C  H  V  P  E  P  R  L  I  R  N  F  T  H  R  R  *  S  L  L  R  F  R  S  N  Q  P  R  S  E  P  Q  E  G  W  Q  E  T  *  C  I  H  C  *  H  H  Y  C  *  C  S   : G  T  Y  V  V  *  D  C  E  A  R  C  K  D  K  V  V  E  P  Q  V  V  *  R  H  A  V  H  W  L  R  G  C  S  *  D  *  E  T  I  D  Q  H  S  G  V  E  C  N  F  R  P  S  *  Q  L  G  V  *  R  S  Q  H  N  I  H  Q  R  *  R  D  V  E  Q  A  Y  E  H  K  S  K  F  F  Q  E  V  A  S  D  I  L  G  G  Q  R  A  W  I  L  G  Y  F  *  R  E  H  *  E  T  Q  A  I  V  L  R  S  R  R  Q  D  *  R  N  R  P  I  N  V  *  L  N  I  *  S  L  I  I  V  C  F  C  Y  R  I  I  R  S  F  L  L  P  N  N  F  *  C  E  F  L  *  *  S  P  V  *  F  L  F  I  F  W  G  C  L  S  T  S  M  R  K  I  L  L  P  Y  V  Q  I  *  S  *  K  L  Q   </first_frame>
            <second_frame>  D  A  V  L  H  F  G  T  H  G  S  L  E  F  M  P  G  K  Q  V  G  M  S  D  A  C  F  P  D  S  L  I  G  N  I  P  N  V  Y  Y  Y  A  A  N  N  P  S  E  A  T  I  A  K  R  R  S  Y  A  N  T  I  S  Y  L  T  P  P  A  E  N  A  G  L  Y  K  G  L  K  Q  L  S  E  L  I  A  S  Y  Q  S  L  K  D  S  G  R  G  P  Q  I  V  S  S  I  I  S  T  A  R  Q  C  N  L  D  K  D  V  D  L  P  D  E  E  K  E  I  D  A  K  E  R  D  L  V  V  G  K  V  Y  A  K  I  M  E  I  E  S  R  L  L  P  C  G  L  H  I  I  G  E  P  P  T  A  M  E  A  V  A  T  L  V  N  I  A  A  L  D  R  A  E  D  D  I  S  S  L  P  S  I  L  A  A  T  V  G  R  N  I  E  E  I  Y  R  G  N  D  N  G  V  L  R  D  V  E  L  L  R  Q  I  T  E  A  S  R  G  A  I  S  A  F  V  E  R  S  T  N  N  K  G  Q  V  V  D  N  S  D  K  L  T  S  L  L  G  F  S  I  N  E  P  W  I  Q  Y  L  S  N  T  Q  F  Y  R  A  D  R  E  K  L  R  V  L  F  Q  F  L  G  E  C  L  K  L  I  V  A  N  N  E  V  G  S  L  K  Q  A  L  E  G  K  Y  V  E  P  G  P  G  G  D  P  I  R  N  P  K  V  L  P  T  G  K  N  I  H  A  L  D  P  Q  A  I  P  T  T  A  A  L  Q  S  A  K  I  V  V  E  R  L  L  E  R  Q  K  I  D  N  G  G  K  Y  P  E  T  V  A  L  V  L  W  G  T  D  N  I  K  T  Y  G  E  S  L  A  Q  V  M  W  M  I  G  V  R  P  V  A  D  T  L  G  R  V  N  R  V  E  P  V  S  L  E  E  L  G  R  P  R  V  D  V  V  V  N  C  S  G  V  F  R  D  L  F  I  N  Q  :  M  N  L  L  D  R  G  I  K  M  V  A  E  L  D  E  P  E  D  Q  N  F  V  R  K  H  A  L  E  Q  A  K  T  L  G  I  D  V  R  E  A  A  T  R  V  F  S  N  A  S  G  S  Y  S  S  N  I  N  L  A  V  E  N  S  S  W  N  D  E  K  Q  L  Q  D  M  Y  L  S  R  K  S  F  A  F  D  C  D  A  P  G  A  G  M  M  E  K  R  K  V  F  E  M  A  L  S  T  A  D  A  T  F  Q  N  L  D  S  S  E  I  S  L  T  D  V  S  H  Y  F  D  S  D  P  T  N  L  V  Q  N  L  R  K  D  G  K  K  P  S  A  Y  I  A  D  T  T  T  A  N  A  Q  :  V  R  T  L  S  E  T  V  R  L  D  A  R  T  K  L  L  N  P  K  W  Y  E  G  M  L  S  T  G  Y  E  G  V  R  E  I  E  K  R  L  T  N  T  V  G  W  S  A  T  S  G  Q  V  D  N  W  V  Y  E  E  A  N  T  T  F  I  K  D  E  E  M  L  N  R  L  M  N  T  N  P  N  S  F  R  K  L  L  Q  T  F  L  E  A  N  G  R  G  Y  W  D  T  S  E  E  N  I  E  K  L  K  Q  L  Y  S  E  V  E  D  K  I  E  G  I  D  R  *  M  Y  S  *  I  Y  D  L  *  L  L  F  V  S  A  T  G  *  *  D  P  F  C  F  L  T  I  S  D  V  N  S  F  D  S  P  Q  C  N  F  C  S  S  F  G  D  V  F  L  L  L  *  E  K  Y  C  F  H  M  F  K  F  D  L  E  S  C  N  </second_frame>
            <third_frame>   M  Q  F  S  T  L  V  L  M  V  L  L  S  S  C  Q  E  N  R  W  E  *  A  M  H  V  S  Q  I  V  S  L  E  T  F  Q  M  S  I  T  M  Q  Q  T  I  H  P  K  Q  L  L  P  N  E  G  V  M  Q  I  P  L  A  T  *  L  P  L  L  R  M  P  D  S  T  R  D  S  S  S  L  V  S  S  L  L  R  T  N  H  *  K  T  Q  V  V  A  L  R  L  *  A  L  S  L  V  L  L  D  S  V  I  L  T  R  T  L  I  F  Q  M  K  R  R  K  *  M  P  K  N  V  T  L  W  *  E  K  Y  M  L  R  L  W  R  L  S  L  V  F  C  P  V  D  F  T  S  L  V  N  L  Q  P  P  W  R  Q  L  P  L  L  S  T  L  L  H  W  T  V  L  K  M  I  F  L  P  F  H  L  F  W  L  P  Q  L  A  E  I  L  R  R  S  I  E  E  M  T  M  E  S  C  E  M  W  S  C  F  V  K  L  L  R  H  H  V  E  Q  Y  Q  P  S  L  N  A  Q  P  T  T  R  V  R  L  L  T  I  L  T  S  *  P  H  S  L  V  F  L  L  M  N  H  G  S  S  I  Y  Q  T  P  N  S  T  E  L  I  G  K  S  S  E  S  C  F  S  S  W  E  S  V  *  S  *  L  W  L  I  T  R  W  E  V  *  N  R  L  L  K  G  N  M  L  N  Q  V  L  E  G  I  Q  S  E  I  R  K  F  C  L  Q  G  K  T  S  M  L  W  T  H  R  L  F  P  Q  Q  Q  H  C  R  A  P  R  *  W  L  K  D  C  W  R  G  K  R  L  T  T  G  A  S  T  R  K  L  L  L  W  C  F  G  E  Q  I  T  S  R  L  M  E  S  R  W  H  R  L  C  G  *  L  V  L  G  Q  L  Q  T  H  L  D  A  L  T  E  W  N  Q  L  V  L  K  S  L  E  G  L  E  L  M  L  L  S  T  A  P  G  C  S  G  I  S  S  S  I  R :   *  I  S  L  T  E  E  S  R  W  L  L  S  L  M  N  R  K  T  K  T  L  S  G  N  M  H  *  N  R  Q  K  H  S  E  L  M  F  V  K  Q  L  L  G  S  S  Q  T  L  R  V  L  T  L  P  T  S  T  *  L  L  R  T  H  H  G  T  T  R  S  N  F  K  T  C  T  *  A  E  S  H  L  H  L  T  V  M  L  L  V  L  A  *  W  R  R  G  K  F  L  R  W  L  *  A  Q  L  M  P  R  S  R  T  S  T  H  Q  K  F  H  S  Q  T  L  V  T  T  S  I  Q  I  Q  P  T  S  F  R  T  S  G  R  M  A  R  N  L  V  H  T  L  L  T  P  L  L  L  M  L  R :   Y  V  R  C  L  R  L  *  G  *  M  Q  G  Q  S  C  *  T  P  S  G  M  K  A  C  C  P  L  A  T  R  V  F  V  R  L  R  N  D  *  P  T  Q  W  G  G  V  Q  L  Q  A  K  L  T  I  G  C  M  K  K  P  T  Q  H  S  S  K  M  K  R  C  *  T  G  L  *  T  Q  I  Q  I  L  S  G  S  C  F  R  H  S  W  R  P  T  G  V  D  T  G  I  L  L  K  R  T  L  R  N  S  S  N  C  T  Q  K  S  K  T  R  L  K  E  *  T  D  K  C  I  A  K  Y  M  I  S  D  Y  C  L  F  L  L  Q  D  N  K  I  L  S  A  S  *  Q  F  L  M  *  I  P  L  I  V  P  S  V  I  F  V  H  L  L  G  M  S  F  Y  F  Y  E  K  N  T  A  S  I  C  S  N  L  I  L  K  V  A  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75521" stop="74208"/>
                    <exon start="74109" stop="73633"/>
                    <exon start="73531" stop="73154"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2166</number_coding_nucleotides>
                  <number_encoded_amino_acids>722</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAVLHFGTHGSLEFMPGKQVGMSDACFPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELIASYQSLKDSGRGPQIVSSIISTARQCNLDKDVDLPDEEKEIDAKERDLVVGKVYAKIMEIESRLLPCGLHIIGEPPTAMEAVATLVNIAALDRAEDDISSLPSILAATVGRNIEEIYRGNDNGVLRDVELLRQITEASRGAISAFVERSTNNKGQVVDNSDKLTSLLGFSINEPWIQYLSNTQFYRADREKLRVLFQFLGECLKLIVANNEVGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAALQSAKIVVERLLERQKIDNGGKYPETVALVLWGTDNIKTYGESLAQVMWMIGVRPVADTLGRVNRVEPVSLEELGRPRVDVVVNCSGVFRDLFINQMNLLDRGIKMVAELDEPEDQNFVRKHALEQAKTLGIDVREAATRVFSNASGSYSSNINLAVENSSWNDEKQLQDMYLSRKSFAFDCDAPGAGMMEKRKVFEMALSTADATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSTGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIKDEEMLNRLMNTNPNSFRKLLQTFLEANGRGYWDTSEENIEKLKQLYSEVEDKIEGIDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75522" e_stop="74208"/>
            <exon e_start="74109" e_stop="73633"/>
            <exon e_start="73531" e_stop="72974"/>
            <exon e_start="72527" e_stop="72496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.999"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.872" e_score="1.000"/>
          <exon-only e_score="0.562"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="75522" e_stop="74208" e_length="1315"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74109" e_stop="73633" e_length="477"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73531" e_stop="72974" e_length="558"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.872">
            <gDNA_intron_boundary i_start="72973" i_stop="72528" i_length="446"/>
          </intron>
          <exon e_serial="4" e_score="0.562">
            <gDNA_exon_boundary e_start="72527" e_stop="72496" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75522" stop="74865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75231" stop="74629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75081" stop="74214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75052" stop="74208"/>
              <exon start="74109" stop="74059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75037" stop="74593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74993" stop="74494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74981" stop="74208"/>
              <exon start="74109" stop="73991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74933" stop="74208"/>
              <exon start="74109" stop="73966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74920" stop="74282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74770" stop="74208"/>
              <exon start="74109" stop="73926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74486" stop="74208"/>
              <exon start="74109" stop="73633"/>
              <exon start="73531" stop="73516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74409" stop="74208"/>
              <exon start="74109" stop="73633"/>
              <exon start="73531" stop="73405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74332" stop="74208"/>
              <exon start="74109" stop="73633"/>
              <exon start="73531" stop="73282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74323" stop="74208"/>
              <exon start="74109" stop="73646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74323" stop="74208"/>
              <exon start="74109" stop="73854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74308" stop="74208"/>
              <exon start="74109" stop="73728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74296" stop="74208"/>
              <exon start="74109" stop="73717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74093" stop="73633"/>
              <exon start="73531" stop="73114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74089" stop="73633"/>
              <exon start="73531" stop="73071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74088" stop="73633"/>
              <exon start="73531" stop="73204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74064" stop="73760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73953" stop="73633"/>
              <exon start="73531" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73936" stop="73633"/>
              <exon start="73531" stop="73054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73913" stop="73633"/>
              <exon start="73531" stop="72985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73910" stop="73633"/>
              <exon start="73531" stop="72985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73895" stop="73633"/>
              <exon start="73531" stop="72999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73859" stop="73633"/>
              <exon start="73531" stop="73382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73835" stop="73633"/>
              <exon start="73531" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73818" stop="73633"/>
              <exon start="73531" stop="73395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73677" stop="73633"/>
              <exon start="73531" stop="73339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73504" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73485" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239125" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73483" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239212" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73462" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239311" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73398" stop="73044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73318" stop="72980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234226" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73300" stop="72974"/>
              <exon start="72527" stop="72496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232356" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATGCAGTTCTCCACTTTGGTACTCATGGTTCTCTTGAGTTCATGCCAGGAAAACAGGTGGGAATGAGCGATGCATGTTTCCCAGATAGTCTCATTGGAAACATTCCAAATGTCTATTACTATGCAGCAAACAATCCATCCGAAGCAACTATTGCCAAACGAAGGAGTTATGCAAATACCATTAGCTACTTGACTCCCCCTGCTGAGAATGCCGGACTCTACAAGGGACTCAAGCAGCTTAGTGAGCTCATTGCTTCGTACCAATCACTGAAAGACTCAGGTCGTGGCCCTCAGATTGTGAGCTCTATCATTAGTACTGCTAGACAGTGTAATCTTGACAAGGACGTTGATCTTCCAGATGAAGAGAAGGAAATAGATGCCAAAGAACGTGACCTTGTGGTAGGAAAAGTATATGCTAAGATTATGGAGATTGAGTCTCGTCTTCTGCCCTGTGGACTTCACATCATTGGTGAACCTCCAACCGCCATGGAGGCAGTTGCCACTCTTGTCAACATTGCTGCATTGGACCGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG : ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG : GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTC : AAACAAAACGTATTCAAAAGCAAAATGAAAAT</gDNA_template>
            <first_frame> *  C  S  S  P  L  W  Y  S  W  F  S  *  V  H  A  R  K  T  G  G  N  E  R  C  M  F  P  R  *  S  H  W  K  H  S  K  C  L  L  L  C  S  K  Q  S  I  R  S  N  Y  C  Q  T  K  E  L  C  K  Y  H  *  L  L  D  S  P  C  *  E  C  R  T  L  Q  G  T  Q  A  A  *  *  A  H  C  F  V  P  I  T  E  R  L  R  S  W  P  S  D  C  E  L  Y  H  *  Y  C  *  T  V  *  S  *  Q  G  R  *  S  S  R  *  R  E  G  N  R  C  Q  R  T  *  P  C  G  R  K  S  I  C  *  D  Y  G  D  *  V  S  S  S  A  L  W  T  S  H  H  W  *  T  S  N  R  H  G  G  S  C  H  S  C  Q  H  C  C  I  G  P  C  *  R  *  Y  F  F  P  S  I  Y  S  G  C  H  S  W  Q  K  Y  *  G  D  L  S  R  K  *  Q  W  S  L  A  R  C  G  A  A  S  S  N  Y  *  G  I  T  W  S  N  I  S  L  R  *  T  L  N  Q  Q  Q  G  S  G  C  *  Q  F  *  Q  A  D  L  T  P  W  F  F  Y  *  *  T  M  D  P  V  F  I  K  H  P  I  L  Q  S  *  *  G  K  A  Q  S  P  V  S  V  L  G  R  V  S  E  A  N  C  G  *  *  R  G  G  K  F  E  T  G  S  *  R  E  I  C  *  T  R  S  W  R  G  S  N  Q  K  S  E  S  F  A  Y  R  E  K  H  P  C  F  G  P  T  G  Y  S  H  N  S  S  T  A  E  R  Q  D  S  G  *  K  I  V  G  E  A  K  D  *  Q  R  G  Q  V  P  G  N  C  C  S  G  A  L  G  N  R  *  H  Q  D  L  W  R  V  V  G  T  G  Y  V  D  D  W  C  *  A  S  C  R  H  T  W  T  R  *  P  S  G  T  S  *  S  *  R  A  W  K  A  *  S  *  C  C  C  Q  L  L  R  G  V  Q  G  S  L  H  Q  S   : D  E  S  P  *  P  R  N  Q  D  G  C  *  A  *  *  T  G  R  P  K  L  C  Q  E  T  C  T  R  T  G  K  N  T  R  N  *  C  S  *  S  S  Y  *  G  L  L  K  R  F  G  F  L  L  F  Q  H  Q  P  S  C  *  E  L  I  M  E  R  R  E  A  T  S  R  H  V  L  E  P  K  V  I  C  I  *  L  *  C  S  W  C  W  H  D  G  E  E  E  S  F  *  D  G  S  K  H  S  *  C  H  V  P  E  P  R  L  I  R  N  F  T  H  R  R  *  S  L  L  R  F  R  S  N  Q  P  R  S  E  P  Q  E  G  W  Q  E  T  *  C  I  H  C  *  H  H  Y  C  *  C  S   : G  T  Y  V  V  *  D  C  E  A  R  C  K  D  K  V  V  E  P  Q  V  V  *  R  H  A  V  H  W  L  R  G  C  S  *  D  *  E  T  I  D  Q  H  S  G  V  E  C  N  F  R  P  S  *  Q  L  G  V  *  R  S  Q  H  N  I  H  Q  R  *  R  D  V  E  Q  A  Y  E  H  K  S  K  F  F  Q  E  V  A  S  D  I  L  G  G  Q  R  A  W  I  L  G  Y  F  *  R  E  H  *  E  T  Q  A  I  V  L  R  S  R  R  Q  D  *  R  N  R  P  I  N  V  *  L  N  I  *  S  L  I  I  V  C  F  C  Y  R  I  I  R  S  F  L  L  P  N  N  F  *  C  E  F  L  *  *  S  P  V  *  F  L  F  I  F  W  G  C  L  S  T  S  M  R  K  I  L  L  P  Y  V   : Q  T  K  R  I  Q  K  Q  N  E  N </first_frame>
            <second_frame>  D  A  V  L  H  F  G  T  H  G  S  L  E  F  M  P  G  K  Q  V  G  M  S  D  A  C  F  P  D  S  L  I  G  N  I  P  N  V  Y  Y  Y  A  A  N  N  P  S  E  A  T  I  A  K  R  R  S  Y  A  N  T  I  S  Y  L  T  P  P  A  E  N  A  G  L  Y  K  G  L  K  Q  L  S  E  L  I  A  S  Y  Q  S  L  K  D  S  G  R  G  P  Q  I  V  S  S  I  I  S  T  A  R  Q  C  N  L  D  K  D  V  D  L  P  D  E  E  K  E  I  D  A  K  E  R  D  L  V  V  G  K  V  Y  A  K  I  M  E  I  E  S  R  L  L  P  C  G  L  H  I  I  G  E  P  P  T  A  M  E  A  V  A  T  L  V  N  I  A  A  L  D  R  A  E  D  D  I  S  S  L  P  S  I  L  A  A  T  V  G  R  N  I  E  E  I  Y  R  G  N  D  N  G  V  L  R  D  V  E  L  L  R  Q  I  T  E  A  S  R  G  A  I  S  A  F  V  E  R  S  T  N  N  K  G  Q  V  V  D  N  S  D  K  L  T  S  L  L  G  F  S  I  N  E  P  W  I  Q  Y  L  S  N  T  Q  F  Y  R  A  D  R  E  K  L  R  V  L  F  Q  F  L  G  E  C  L  K  L  I  V  A  N  N  E  V  G  S  L  K  Q  A  L  E  G  K  Y  V  E  P  G  P  G  G  D  P  I  R  N  P  K  V  L  P  T  G  K  N  I  H  A  L  D  P  Q  A  I  P  T  T  A  A  L  Q  S  A  K  I  V  V  E  R  L  L  E  R  Q  K  I  D  N  G  G  K  Y  P  E  T  V  A  L  V  L  W  G  T  D  N  I  K  T  Y  G  E  S  L  A  Q  V  M  W  M  I  G  V  R  P  V  A  D  T  L  G  R  V  N  R  V  E  P  V  S  L  E  E  L  G  R  P  R  V  D  V  V  V  N  C  S  G  V  F  R  D  L  F  I  N  Q  :  M  N  L  L  D  R  G  I  K  M  V  A  E  L  D  E  P  E  D  Q  N  F  V  R  K  H  A  L  E  Q  A  K  T  L  G  I  D  V  R  E  A  A  T  R  V  F  S  N  A  S  G  S  Y  S  S  N  I  N  L  A  V  E  N  S  S  W  N  D  E  K  Q  L  Q  D  M  Y  L  S  R  K  S  F  A  F  D  C  D  A  P  G  A  G  M  M  E  K  R  K  V  F  E  M  A  L  S  T  A  D  A  T  F  Q  N  L  D  S  S  E  I  S  L  T  D  V  S  H  Y  F  D  S  D  P  T  N  L  V  Q  N  L  R  K  D  G  K  K  P  S  A  Y  I  A  D  T  T  T  A  N  A  Q  :  V  R  T  L  S  E  T  V  R  L  D  A  R  T  K  L  L  N  P  K  W  Y  E  G  M  L  S  T  G  Y  E  G  V  R  E  I  E  K  R  L  T  N  T  V  G  W  S  A  T  S  G  Q  V  D  N  W  V  Y  E  E  A  N  T  T  F  I  K  D  E  E  M  L  N  R  L  M  N  T  N  P  N  S  F  R  K  L  L  Q  T  F  L  E  A  N  G  R  G  Y  W  D  T  S  E  E  N  I  E  K  L  K  Q  L  Y  S  E  V  E  D  K  I  E  G  I  D  R  *  M  Y  S  *  I  Y  D  L  *  L  L  F  V  S  A  T  G  *  *  D  P  F  C  F  L  T  I  S  D  V  N  S  F  D  S  P  Q  C  N  F  C  S  S  F  G  D  V  F  L  L  L  *  E  K  Y  C  F  H  M  F  :  K  Q  N  V  F  K  S  K  M  K   </second_frame>
            <third_frame>   M  Q  F  S  T  L  V  L  M  V  L  L  S  S  C  Q  E  N  R  W  E  *  A  M  H  V  S  Q  I  V  S  L  E  T  F  Q  M  S  I  T  M  Q  Q  T  I  H  P  K  Q  L  L  P  N  E  G  V  M  Q  I  P  L  A  T  *  L  P  L  L  R  M  P  D  S  T  R  D  S  S  S  L  V  S  S  L  L  R  T  N  H  *  K  T  Q  V  V  A  L  R  L  *  A  L  S  L  V  L  L  D  S  V  I  L  T  R  T  L  I  F  Q  M  K  R  R  K  *  M  P  K  N  V  T  L  W  *  E  K  Y  M  L  R  L  W  R  L  S  L  V  F  C  P  V  D  F  T  S  L  V  N  L  Q  P  P  W  R  Q  L  P  L  L  S  T  L  L  H  W  T  V  L  K  M  I  F  L  P  F  H  L  F  W  L  P  Q  L  A  E  I  L  R  R  S  I  E  E  M  T  M  E  S  C  E  M  W  S  C  F  V  K  L  L  R  H  H  V  E  Q  Y  Q  P  S  L  N  A  Q  P  T  T  R  V  R  L  L  T  I  L  T  S  *  P  H  S  L  V  F  L  L  M  N  H  G  S  S  I  Y  Q  T  P  N  S  T  E  L  I  G  K  S  S  E  S  C  F  S  S  W  E  S  V  *  S  *  L  W  L  I  T  R  W  E  V  *  N  R  L  L  K  G  N  M  L  N  Q  V  L  E  G  I  Q  S  E  I  R  K  F  C  L  Q  G  K  T  S  M  L  W  T  H  R  L  F  P  Q  Q  Q  H  C  R  A  P  R  *  W  L  K  D  C  W  R  G  K  R  L  T  T  G  A  S  T  R  K  L  L  L  W  C  F  G  E  Q  I  T  S  R  L  M  E  S  R  W  H  R  L  C  G  *  L  V  L  G  Q  L  Q  T  H  L  D  A  L  T  E  W  N  Q  L  V  L  K  S  L  E  G  L  E  L  M  L  L  S  T  A  P  G  C  S  G  I  S  S  S  I  R :   *  I  S  L  T  E  E  S  R  W  L  L  S  L  M  N  R  K  T  K  T  L  S  G  N  M  H  *  N  R  Q  K  H  S  E  L  M  F  V  K  Q  L  L  G  S  S  Q  T  L  R  V  L  T  L  P  T  S  T  *  L  L  R  T  H  H  G  T  T  R  S  N  F  K  T  C  T  *  A  E  S  H  L  H  L  T  V  M  L  L  V  L  A  *  W  R  R  G  K  F  L  R  W  L  *  A  Q  L  M  P  R  S  R  T  S  T  H  Q  K  F  H  S  Q  T  L  V  T  T  S  I  Q  I  Q  P  T  S  F  R  T  S  G  R  M  A  R  N  L  V  H  T  L  L  T  P  L  L  L  M  L  R :   Y  V  R  C  L  R  L  *  G  *  M  Q  G  Q  S  C  *  T  P  S  G  M  K  A  C  C  P  L  A  T  R  V  F  V  R  L  R  N  D  *  P  T  Q  W  G  G  V  Q  L  Q  A  K  L  T  I  G  C  M  K  K  P  T  Q  H  S  S  K  M  K  R  C  *  T  G  L  *  T  Q  I  Q  I  L  S  G  S  C  F  R  H  S  W  R  P  T  G  V  D  T  G  I  L  L  K  R  T  L  R  N  S  S  N  C  T  Q  K  S  K  T  R  L  K  E  *  T  D  K  C  I  A  K  Y  M  I  S  D  Y  C  L  F  L  L  Q  D  N  K  I  L  S  A  S  *  Q  F  L  M  *  I  P  L  I  V  P  S  V  I  F  V  H  L  L  G  M  S  F  Y  F  Y  E  K  N  T  A  S  I  C  S :   N  K  T  Y  S  K  A  K  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75521" stop="74208"/>
                    <exon start="74109" stop="73633"/>
                    <exon start="73531" stop="73154"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2166</number_coding_nucleotides>
                  <number_encoded_amino_acids>722</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAVLHFGTHGSLEFMPGKQVGMSDACFPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELIASYQSLKDSGRGPQIVSSIISTARQCNLDKDVDLPDEEKEIDAKERDLVVGKVYAKIMEIESRLLPCGLHIIGEPPTAMEAVATLVNIAALDRAEDDISSLPSILAATVGRNIEEIYRGNDNGVLRDVELLRQITEASRGAISAFVERSTNNKGQVVDNSDKLTSLLGFSINEPWIQYLSNTQFYRADREKLRVLFQFLGECLKLIVANNEVGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAALQSAKIVVERLLERQKIDNGGKYPETVALVLWGTDNIKTYGESLAQVMWMIGVRPVADTLGRVNRVEPVSLEELGRPRVDVVVNCSGVFRDLFINQMNLLDRGIKMVAELDEPEDQNFVRKHALEQAKTLGIDVREAATRVFSNASGSYSSNINLAVENSSWNDEKQLQDMYLSRKSFAFDCDAPGAGMMEKRKVFEMALSTADATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSTGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIKDEEMLNRLMNTNPNSFRKLLQTFLEANGRGYWDTSEENIEKLKQLYSEVEDKIEGIDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="75522" e_stop="74208"/>
            <exon e_start="74109" e_stop="74062"/>
            <exon e_start="73876" e_stop="73633"/>
            <exon e_start="73531" e_stop="72949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.999"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="75522" e_stop="74208" e_length="1315"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74109" e_stop="74062" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74061" i_stop="73877" i_length="185"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73876" e_stop="73633" e_length="244"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73531" e_stop="72949" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75522" stop="74865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75231" stop="74629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75081" stop="74214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75037" stop="74593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74993" stop="74494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74920" stop="74282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74368" stop="74208"/>
              <exon start="74109" stop="74062"/>
              <exon start="73876" stop="73633"/>
              <exon start="73531" stop="73135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73859" stop="73633"/>
              <exon start="73531" stop="73382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73835" stop="73633"/>
              <exon start="73531" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73818" stop="73633"/>
              <exon start="73531" stop="73395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73684" stop="73633"/>
              <exon start="73531" stop="72958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73677" stop="73633"/>
              <exon start="73531" stop="73339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73523" stop="72972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73504" stop="72958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73504" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73488" stop="72949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73485" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239125" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73483" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239212" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73476" stop="72964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73476" stop="72964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73462" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239311" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73398" stop="73044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73358" stop="72967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73319" stop="72972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232432" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73318" stop="72980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234226" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATGCAGTTCTCCACTTTGGTACTCATGGTTCTCTTGAGTTCATGCCAGGAAAACAGGTGGGAATGAGCGATGCATGTTTCCCAGATAGTCTCATTGGAAACATTCCAAATGTCTATTACTATGCAGCAAACAATCCATCCGAAGCAACTATTGCCAAACGAAGGAGTTATGCAAATACCATTAGCTACTTGACTCCCCCTGCTGAGAATGCCGGACTCTACAAGGGACTCAAGCAGCTTAGTGAGCTCATTGCTTCGTACCAATCACTGAAAGACTCAGGTCGTGGCCCTCAGATTGTGAGCTCTATCATTAGTACTGCTAGACAGTGTAATCTTGACAAGGACGTTGATCTTCCAGATGAAGAGAAGGAAATAGATGCCAAAGAACGTGACCTTGTGGTAGGAAAAGTATATGCTAAGATTATGGAGATTGAGTCTCGTCTTCTGCCCTGTGGACTTCACATCATTGGTGAACCTCCAACCGCCATGGAGGCAGTTGCCACTCTTGTCAACATTGCTGCATTGGACCGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG : ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAA : CCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG : GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAATTTGATCTTGAAAGTTGCAACT</gDNA_template>
            <first_frame> *  C  S  S  P  L  W  Y  S  W  F  S  *  V  H  A  R  K  T  G  G  N  E  R  C  M  F  P  R  *  S  H  W  K  H  S  K  C  L  L  L  C  S  K  Q  S  I  R  S  N  Y  C  Q  T  K  E  L  C  K  Y  H  *  L  L  D  S  P  C  *  E  C  R  T  L  Q  G  T  Q  A  A  *  *  A  H  C  F  V  P  I  T  E  R  L  R  S  W  P  S  D  C  E  L  Y  H  *  Y  C  *  T  V  *  S  *  Q  G  R  *  S  S  R  *  R  E  G  N  R  C  Q  R  T  *  P  C  G  R  K  S  I  C  *  D  Y  G  D  *  V  S  S  S  A  L  W  T  S  H  H  W  *  T  S  N  R  H  G  G  S  C  H  S  C  Q  H  C  C  I  G  P  C  *  R  *  Y  F  F  P  S  I  Y  S  G  C  H  S  W  Q  K  Y  *  G  D  L  S  R  K  *  Q  W  S  L  A  R  C  G  A  A  S  S  N  Y  *  G  I  T  W  S  N  I  S  L  R  *  T  L  N  Q  Q  Q  G  S  G  C  *  Q  F  *  Q  A  D  L  T  P  W  F  F  Y  *  *  T  M  D  P  V  F  I  K  H  P  I  L  Q  S  *  *  G  K  A  Q  S  P  V  S  V  L  G  R  V  S  E  A  N  C  G  *  *  R  G  G  K  F  E  T  G  S  *  R  E  I  C  *  T  R  S  W  R  G  S  N  Q  K  S  E  S  F  A  Y  R  E  K  H  P  C  F  G  P  T  G  Y  S  H  N  S  S  T  A  E  R  Q  D  S  G  *  K  I  V  G  E  A  K  D  *  Q  R  G  Q  V  P  G  N  C  C  S  G  A  L  G  N  R  *  H  Q  D  L  W  R  V  V  G  T  G  Y  V  D  D  W  C  *  A  S  C  R  H  T  W  T  R  *  P  S  G  T  S  *  S  *  R  A  W  K  A  *  S  *  C  C  C  Q  L  L  R  G  V  Q  G  S  L  H  Q  S   : D  E  S  P  *  P  R  N  Q  D  G  C  *  A  *  *   : T  E  S  H  L  H  L  T  V  M  L  L  V  L  A  *  W  R  R  G  K  F  L  R  W  L  *  A  Q  L  M  P  R  S  R  T  S  T  H  Q  K  F  H  S  Q  T  L  V  T  T  S  I  Q  I  Q  P  T  S  F  R  T  S  G  R  M  A  R  N  L  V  H  T  L  L  T  P  L  L  L  M  L  R :   Y  V  R  C  L  R  L  *  G  *  M  Q  G  Q  S  C  *  T  P  S  G  M  K  A  C  C  P  L  A  T  R  V  F  V  R  L  R  N  D  *  P  T  Q  W  G  G  V  Q  L  Q  A  K  L  T  I  G  C  M  K  K  P  T  Q  H  S  S  K  M  K  R  C  *  T  G  L  *  T  Q  I  Q  I  L  S  G  S  C  F  R  H  S  W  R  P  T  G  V  D  T  G  I  L  L  K  R  T  L  R  N  S  S  N  C  T  Q  K  S  K  T  R  L  K  E  *  T  D  K  C  I  A  K  Y  M  I  S  D  Y  C  L  F  L  L  Q  D  N  K  I  L  S  A  S  *  Q  F  L  M  *  I  P  L  I  V  P  S  V  I  F  V  H  L  L  G  M  S  F  Y  F  Y  E  K  N  T  A  S  I  C  S  N  L  I  L  K  V  A  T </first_frame>
            <second_frame>  D  A  V  L  H  F  G  T  H  G  S  L  E  F  M  P  G  K  Q  V  G  M  S  D  A  C  F  P  D  S  L  I  G  N  I  P  N  V  Y  Y  Y  A  A  N  N  P  S  E  A  T  I  A  K  R  R  S  Y  A  N  T  I  S  Y  L  T  P  P  A  E  N  A  G  L  Y  K  G  L  K  Q  L  S  E  L  I  A  S  Y  Q  S  L  K  D  S  G  R  G  P  Q  I  V  S  S  I  I  S  T  A  R  Q  C  N  L  D  K  D  V  D  L  P  D  E  E  K  E  I  D  A  K  E  R  D  L  V  V  G  K  V  Y  A  K  I  M  E  I  E  S  R  L  L  P  C  G  L  H  I  I  G  E  P  P  T  A  M  E  A  V  A  T  L  V  N  I  A  A  L  D  R  A  E  D  D  I  S  S  L  P  S  I  L  A  A  T  V  G  R  N  I  E  E  I  Y  R  G  N  D  N  G  V  L  R  D  V  E  L  L  R  Q  I  T  E  A  S  R  G  A  I  S  A  F  V  E  R  S  T  N  N  K  G  Q  V  V  D  N  S  D  K  L  T  S  L  L  G  F  S  I  N  E  P  W  I  Q  Y  L  S  N  T  Q  F  Y  R  A  D  R  E  K  L  R  V  L  F  Q  F  L  G  E  C  L  K  L  I  V  A  N  N  E  V  G  S  L  K  Q  A  L  E  G  K  Y  V  E  P  G  P  G  G  D  P  I  R  N  P  K  V  L  P  T  G  K  N  I  H  A  L  D  P  Q  A  I  P  T  T  A  A  L  Q  S  A  K  I  V  V  E  R  L  L  E  R  Q  K  I  D  N  G  G  K  Y  P  E  T  V  A  L  V  L  W  G  T  D  N  I  K  T  Y  G  E  S  L  A  Q  V  M  W  M  I  G  V  R  P  V  A  D  T  L  G  R  V  N  R  V  E  P  V  S  L  E  E  L  G  R  P  R  V  D  V  V  V  N  C  S  G  V  F  R  D  L  F  I  N  Q  :  M  N  L  L  D  R  G  I  K  M  V  A  E  L  D  E  :  P  K  V  I  C  I  *  L  *  C  S  W  C  W  H  D  G  E  E  E  S  F  *  D  G  S  K  H  S  *  C  H  V  P  E  P  R  L  I  R  N  F  T  H  R  R  *  S  L  L  R  F  R  S  N  Q  P  R  S  E  P  Q  E  G  W  Q  E  T  *  C  I  H  C  *  H  H  Y  C  *  C  S   : G  T  Y  V  V  *  D  C  E  A  R  C  K  D  K  V  V  E  P  Q  V  V  *  R  H  A  V  H  W  L  R  G  C  S  *  D  *  E  T  I  D  Q  H  S  G  V  E  C  N  F  R  P  S  *  Q  L  G  V  *  R  S  Q  H  N  I  H  Q  R  *  R  D  V  E  Q  A  Y  E  H  K  S  K  F  F  Q  E  V  A  S  D  I  L  G  G  Q  R  A  W  I  L  G  Y  F  *  R  E  H  *  E  T  Q  A  I  V  L  R  S  R  R  Q  D  *  R  N  R  P  I  N  V  *  L  N  I  *  S  L  I  I  V  C  F  C  Y  R  I  I  R  S  F  L  L  P  N  N  F  *  C  E  F  L  *  *  S  P  V  *  F  L  F  I  F  W  G  C  L  S  T  S  M  R  K  I  L  L  P  Y  V  Q  I  *  S  *  K  L  Q   </second_frame>
            <third_frame>   M  Q  F  S  T  L  V  L  M  V  L  L  S  S  C  Q  E  N  R  W  E  *  A  M  H  V  S  Q  I  V  S  L  E  T  F  Q  M  S  I  T  M  Q  Q  T  I  H  P  K  Q  L  L  P  N  E  G  V  M  Q  I  P  L  A  T  *  L  P  L  L  R  M  P  D  S  T  R  D  S  S  S  L  V  S  S  L  L  R  T  N  H  *  K  T  Q  V  V  A  L  R  L  *  A  L  S  L  V  L  L  D  S  V  I  L  T  R  T  L  I  F  Q  M  K  R  R  K  *  M  P  K  N  V  T  L  W  *  E  K  Y  M  L  R  L  W  R  L  S  L  V  F  C  P  V  D  F  T  S  L  V  N  L  Q  P  P  W  R  Q  L  P  L  L  S  T  L  L  H  W  T  V  L  K  M  I  F  L  P  F  H  L  F  W  L  P  Q  L  A  E  I  L  R  R  S  I  E  E  M  T  M  E  S  C  E  M  W  S  C  F  V  K  L  L  R  H  H  V  E  Q  Y  Q  P  S  L  N  A  Q  P  T  T  R  V  R  L  L  T  I  L  T  S  *  P  H  S  L  V  F  L  L  M  N  H  G  S  S  I  Y  Q  T  P  N  S  T  E  L  I  G  K  S  S  E  S  C  F  S  S  W  E  S  V  *  S  *  L  W  L  I  T  R  W  E  V  *  N  R  L  L  K  G  N  M  L  N  Q  V  L  E  G  I  Q  S  E  I  R  K  F  C  L  Q  G  K  T  S  M  L  W  T  H  R  L  F  P  Q  Q  Q  H  C  R  A  P  R  *  W  L  K  D  C  W  R  G  K  R  L  T  T  G  A  S  T  R  K  L  L  L  W  C  F  G  E  Q  I  T  S  R  L  M  E  S  R  W  H  R  L  C  G  *  L  V  L  G  Q  L  Q  T  H  L  D  A  L  T  E  W  N  Q  L  V  L  K  S  L  E  G  L  E  L  M  L  L  S  T  A  P  G  C  S  G  I  S  S  S  I  R :   *  I  S  L  T  E  E  S  R  W  L  L  S  L  M  N :   R  K  S  F  A  F  D  C  D  A  P  G  A  G  M  M  E  K  R  K  V  F  E  M  A  L  S  T  A  D  A  T  F  Q  N  L  D  S  S  E  I  S  L  T  D  V  S  H  Y  F  D  S  D  P  T  N  L  V  Q  N  L  R  K  D  G  K  K  P  S  A  Y  I  A  D  T  T  T  A  N  A  Q  :  V  R  T  L  S  E  T  V  R  L  D  A  R  T  K  L  L  N  P  K  W  Y  E  G  M  L  S  T  G  Y  E  G  V  R  E  I  E  K  R  L  T  N  T  V  G  W  S  A  T  S  G  Q  V  D  N  W  V  Y  E  E  A  N  T  T  F  I  K  D  E  E  M  L  N  R  L  M  N  T  N  P  N  S  F  R  K  L  L  Q  T  F  L  E  A  N  G  R  G  Y  W  D  T  S  E  E  N  I  E  K  L  K  Q  L  Y  S  E  V  E  D  K  I  E  G  I  D  R  *  M  Y  S  *  I  Y  D  L  *  L  L  F  V  S  A  T  G  *  *  D  P  F  C  F  L  T  I  S  D  V  N  S  F  D  S  P  Q  C  N  F  C  S  S  F  G  D  V  F  L  L  L  *  E  K  Y  C  F  H  M  F  K  F  D  L  E  S  C  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75521" stop="74208"/>
                    <exon start="74109" stop="74062"/>
                    <exon start="73876" stop="73856"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAVLHFGTHGSLEFMPGKQVGMSDACFPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELIASYQSLKDSGRGPQIVSSIISTARQCNLDKDVDLPDEEKEIDAKERDLVVGKVYAKIMEIESRLLPCGLHIIGEPPTAMEAVATLVNIAALDRAEDDISSLPSILAATVGRNIEEIYRGNDNGVLRDVELLRQITEASRGAISAFVERSTNNKGQVVDNSDKLTSLLGFSINEPWIQYLSNTQFYRADREKLRVLFQFLGECLKLIVANNEVGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAALQSAKIVVERLLERQKIDNGGKYPETVALVLWGTDNIKTYGESLAQVMWMIGVRPVADTLGRVNRVEPVSLEELGRPRVDVVVNCSGVFRDLFINQMNLLDRGIKMVAELDEPKVICI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="73604" e_stop="72949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="73604" e_stop="72949" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73604" stop="72969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73523" stop="72972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73504" stop="72958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73504" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73488" stop="72949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73485" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239125" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73483" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239212" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73476" stop="72964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73476" stop="72964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73462" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239311" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73398" stop="73044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73358" stop="72967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73319" stop="72972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232432" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73318" stop="72980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234226" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAATTTGATCTTGAAAGTTGCAACT</gDNA_template>
            <first_frame> E  R  C  *  L  M  K  L  I  E  V  V  Y  F  M  P  N  A  S  I  C  D  D  S  G  T  Y  V  V  *  D  C  E  A  R  C  K  D  K  V  V  E  P  Q  V  V  *  R  H  A  V  H  W  L  R  G  C  S  *  D  *  E  T  I  D  Q  H  S  G  V  E  C  N  F  R  P  S  *  Q  L  G  V  *  R  S  Q  H  N  I  H  Q  R  *  R  D  V  E  Q  A  Y  E  H  K  S  K  F  F  Q  E  V  A  S  D  I  L  G  G  Q  R  A  W  I  L  G  Y  F  *  R  E  H  *  E  T  Q  A  I  V  L  R  S  R  R  Q  D  *  R  N  R  P  I  N  V  *  L  N  I  *  S  L  I  I  V  C  F  C  Y  R  I  I  R  S  F  L  L  P  N  N  F  *  C  E  F  L  *  *  S  P  V  *  F  L  F  I  F  W  G  C  L  S  T  S  M  R  K  I  L  L  P  Y  V  Q  I  *  S  *  K  L  Q   </first_frame>
            <second_frame>  K  D  V  N  S  *  S  *  *  R  S  F  I  L  C  L  M  P  L  S  V  M  I  Q  V  R  T  L  S  E  T  V  R  L  D  A  R  T  K  L  L  N  P  K  W  Y  E  G  M  L  S  T  G  Y  E  G  V  R  E  I  E  K  R  L  T  N  T  V  G  W  S  A  T  S  G  Q  V  D  N  W  V  Y  E  E  A  N  T  T  F  I  K  D  E  E  M  L  N  R  L  M  N  T  N  P  N  S  F  R  K  L  L  Q  T  F  L  E  A  N  G  R  G  Y  W  D  T  S  E  E  N  I  E  K  L  K  Q  L  Y  S  E  V  E  D  K  I  E  G  I  D  R  *  M  Y  S  *  I  Y  D  L  *  L  L  F  V  S  A  T  G  *  *  D  P  F  C  F  L  T  I  S  D  V  N  S  F  D  S  P  Q  C  N  F  C  S  S  F  G  D  V  F  L  L  L  *  E  K  Y  C  F  H  M  F  K  F  D  L  E  S  C  N  </second_frame>
            <third_frame>   K  M  L  T  H  E  V  D  R  G  R  L  F  Y  A  *  C  L  Y  L  *  *  F  R  Y  V  R  C  L  R  L  *  G  *  M  Q  G  Q  S  C  *  T  P  S  G  M  K  A  C  C  P  L  A  T  R  V  F  V  R  L  R  N  D  *  P  T  Q  W  G  G  V  Q  L  Q  A  K  L  T  I  G  C  M  K  K  P  T  Q  H  S  S  K  M  K  R  C  *  T  G  L  *  T  Q  I  Q  I  L  S  G  S  C  F  R  H  S  W  R  P  T  G  V  D  T  G  I  L  L  K  R  T  L  R  N  S  S  N  C  T  Q  K  S  K  T  R  L  K  E  *  T  D  K  C  I  A  K  Y  M  I  S  D  Y  C  L  F  L  L  Q  D  N  K  I  L  S  A  S  *  Q  F  L  M  *  I  P  L  I  V  P  S  V  I  F  V  H  L  L  G  M  S  F  Y  F  Y  E  K  N  T  A  S  I  C  S  N  L  I  L  K  V  A  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73576" stop="73154"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSFILCLMPLSVMIQVRTLSETVRLDARTKLLNPKWYEGMLSTGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIKDEEMLNRLMNTNPNSFRKLLQTFLEANGRGYWDTSEENIEKLKQLYSEVEDKIEGIDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="74850" e_stop="74727"/>
            <exon e_start="73653" e_stop="73633"/>
            <exon e_start="73531" e_stop="72949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74850" e_stop="74727" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74726" i_stop="73654" i_length="1073"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73653" e_stop="73633" e_length="21"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73531" e_stop="72949" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74850" stop="74727"/>
              <exon start="73653" stop="73633"/>
              <exon start="73531" stop="73128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73523" stop="72972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73504" stop="72958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73504" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73488" stop="72949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73485" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239125" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73483" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239212" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73476" stop="72964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73476" stop="72964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73462" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239311" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73398" stop="73044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73358" stop="72967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73319" stop="72972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232432" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73318" stop="72980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234226" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAAC : ACCACTACTGCTAATGCTCAG : GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAATTTGATCTTGAAAGTTGCAACT</gDNA_template>
            <first_frame> S  N  I  S  L  R  *  T  L  N  Q  Q  Q  G  S  G  C  *  Q  F  *  Q  A  D  L  T  P  W  F  F  Y  *  *  T  M  D  P  V  F  I  K   : H  H  Y  C  *  C  S   : G  T  Y  V  V  *  D  C  E  A  R  C  K  D  K  V  V  E  P  Q  V  V  *  R  H  A  V  H  W  L  R  G  C  S  *  D  *  E  T  I  D  Q  H  S  G  V  E  C  N  F  R  P  S  *  Q  L  G  V  *  R  S  Q  H  N  I  H  Q  R  *  R  D  V  E  Q  A  Y  E  H  K  S  K  F  F  Q  E  V  A  S  D  I  L  G  G  Q  R  A  W  I  L  G  Y  F  *  R  E  H  *  E  T  Q  A  I  V  L  R  S  R  R  Q  D  *  R  N  R  P  I  N  V  *  L  N  I  *  S  L  I  I  V  C  F  C  Y  R  I  I  R  S  F  L  L  P  N  N  F  *  C  E  F  L  *  *  S  P  V  *  F  L  F  I  F  W  G  C  L  S  T  S  M  R  K  I  L  L  P  Y  V  Q  I  *  S  *  K  L  Q   </first_frame>
            <second_frame>  A  I  S  A  F  V  E  R  S  T  N  N  K  G  Q  V  V  D  N  S  D  K  L  T  S  L  L  G  F  S  I  N  E  P  W  I  Q  Y  L  S  N  :  T  T  T  A  N  A  Q  :  V  R  T  L  S  E  T  V  R  L  D  A  R  T  K  L  L  N  P  K  W  Y  E  G  M  L  S  T  G  Y  E  G  V  R  E  I  E  K  R  L  T  N  T  V  G  W  S  A  T  S  G  Q  V  D  N  W  V  Y  E  E  A  N  T  T  F  I  K  D  E  E  M  L  N  R  L  M  N  T  N  P  N  S  F  R  K  L  L  Q  T  F  L  E  A  N  G  R  G  Y  W  D  T  S  E  E  N  I  E  K  L  K  Q  L  Y  S  E  V  E  D  K  I  E  G  I  D  R  *  M  Y  S  *  I  Y  D  L  *  L  L  F  V  S  A  T  G  *  *  D  P  F  C  F  L  T  I  S  D  V  N  S  F  D  S  P  Q  C  N  F  C  S  S  F  G  D  V  F  L  L  L  *  E  K  Y  C  F  H  M  F  K  F  D  L  E  S  C  N  </second_frame>
            <third_frame>   Q  Y  Q  P  S  L  N  A  Q  P  T  T  R  V  R  L  L  T  I  L  T  S  *  P  H  S  L  V  F  L  L  M  N  H  G  S  S  I  Y  Q  T :   P  L  L  L  M  L  R :   Y  V  R  C  L  R  L  *  G  *  M  Q  G  Q  S  C  *  T  P  S  G  M  K  A  C  C  P  L  A  T  R  V  F  V  R  L  R  N  D  *  P  T  Q  W  G  G  V  Q  L  Q  A  K  L  T  I  G  C  M  K  K  P  T  Q  H  S  S  K  M  K  R  C  *  T  G  L  *  T  Q  I  Q  I  L  S  G  S  C  F  R  H  S  W  R  P  T  G  V  D  T  G  I  L  L  K  R  T  L  R  N  S  S  N  C  T  Q  K  S  K  T  R  L  K  E  *  T  D  K  C  I  A  K  Y  M  I  S  D  Y  C  L  F  L  L  Q  D  N  K  I  L  S  A  S  *  Q  F  L  M  *  I  P  L  I  V  P  S  V  I  F  V  H  L  L  G  M  S  F  Y  F  Y  E  K  N  T  A  S  I  C  S  N  L  I  L  K  V  A  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74849" stop="74727"/>
                    <exon start="73653" stop="73633"/>
                    <exon start="73531" stop="73154"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AISAFVERSTNNKGQVVDNSDKLTSLLGFSINEPWIQYLSNTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSTGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIKDEEMLNRLMNTNPNSFRKLLQTFLEANGRGYWDTSEENIEKLKQLYSEVEDKIEGIDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="72965" PGL_stop="73477"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72965" e_stop="73477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="72965" e_stop="73477" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72965" stop="73477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72966" stop="73341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72969" stop="73395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72969" stop="73337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72969" stop="73312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73064" stop="73341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAAATTTGAACATATGGAAGCAGTATTTTTCTCATAGAAGTAGAAAGACATCCCCAAAAGATGAACAAAAATTACACTGGGGACTATCAAAGGAATTCACATCAGAAATTGTTAGGAAGCAGAAAGGATCTTATTATCCTGTAGCAGAAACAAACAATAATCAGAGATCATATATTTAGCTATACATTTATCGGTCTATTCCTTCAATCTTGTCTTCGACTTCTGAGTACAATTGCTTGAGTTTCTCAATGTTCTCTTCAGAAGTATCCCAGTATCCACGCCCGTTGGCCTCCAAGAATGTCTGAAGCAACTTCCTGAAAGAATTTGGATTTGTGTTCATAAGCCTGTTCAACATCTCTTCATCTTTGATGAATGTTGTGTTGGCTTCTTCATACACCCAATTGTCAACTTGGCCTGAAGTTGCACTCCACCCCACTGTGTTGGTCAATCGTTTCTCAATCTCACGAACACCCTCGTAGCCAGTGGACAGCATGCCTTCATACCACTTGGG</gDNA_template>
            <first_frame> I  K  F  E  H  M  E  A  V  F  F  S  *  K  *  K  D  I  P  K  R  *  T  K  I  T  L  G  T  I  K  G  I  H  I  R  N  C  *  E  A  E  R  I  L  L  S  C  S  R  N  K  Q  *  S  E  I  I  Y  L  A  I  H  L  S  V  Y  S  F  N  L  V  F  D  F  *  V  Q  L  L  E  F  L  N  V  L  F  R  S  I  P  V  S  T  P  V  G  L  Q  E  C  L  K  Q  L  P  E  R  I  W  I  C  V  H  K  P  V  Q  H  L  F  I  F  D  E  C  C  V  G  F  F  I  H  P  I  V  N  L  A  *  S  C  T  P  P  H  C  V  G  Q  S  F  L  N  L  T  N  T  L  V  A  S  G  Q  H  A  F  I  P  L  G </first_frame>
            <second_frame>  S  N  L  N  I  W  K  Q  Y  F  S  H  R  S  R  K  T  S  P  K  D  E  Q  K  L  H  W  G  L  S  K  E  F  T  S  E  I  V  R  K  Q  K  G  S  Y  Y  P  V  A  E  T  N  N  N  Q  R  S  Y  I  *  L  Y  I  Y  R  S  I  P  S  I  L  S  S  T  S  E  Y  N  C  L  S  F  S  M  F  S  S  E  V  S  Q  Y  P  R  P  L  A  S  K  N  V  *  S  N  F  L  K  E  F  G  F  V  F  I  S  L  F  N  I  S  S  S  L  M  N  V  V  L  A  S  S  Y  T  Q  L  S  T  W  P  E  V  A  L  H  P  T  V  L  V  N  R  F  S  I  S  R  T  P  S  *  P  V  D  S  M  P  S  Y  H  L   </second_frame>
            <third_frame>   Q  I  *  T  Y  G  S  S  I  F  L  I  E  V  E  R  H  P  Q  K  M  N  K  N  Y  T  G  D  Y  Q  R  N  S  H  Q  K  L  L  G  S  R  K  D  L  I  I  L  *  Q  K  Q  T  I  I  R  D  H  I  F  S  Y  T  F  I  G  L  F  L  Q  S  C  L  R  L  L  S  T  I  A  *  V  S  Q  C  S  L  Q  K  Y  P  S  I  H  A  R  W  P  P  R  M  S  E  A  T  S  *  K  N  L  D  L  C  S  *  A  C  S  T  S  L  H  L  *  *  M  L  C  W  L  L  H  T  P  N  C  Q  L  G  L  K  L  H  S  T  P  L  C  W  S  I  V  S  Q  S  H  E  H  P  R  S  Q  W  T  A  C  L  H  T  T  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0114C15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="90102" PGL_stop="84767"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90102" e_stop="90010"/>
            <exon e_start="87340" e_stop="87235"/>
            <exon e_start="86672" e_stop="86595"/>
            <exon e_start="86472" e_stop="86342"/>
            <exon e_start="85876" e_stop="85752"/>
            <exon e_start="85127" e_stop="84767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.292" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.909" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90102" e_stop="90010" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.988">
            <gDNA_intron_boundary i_start="90009" i_stop="87341" i_length="2669"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87340" e_stop="87235" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="87234" i_stop="86673" i_length="562"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86672" e_stop="86595" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.940">
            <gDNA_intron_boundary i_start="86594" i_stop="86473" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86472" e_stop="86342" e_length="131"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.292">
            <gDNA_intron_boundary i_start="86341" i_stop="85877" i_length="465"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85876" e_stop="85752" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.909">
            <gDNA_intron_boundary i_start="85751" i_stop="85128" i_length="624"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85127" e_stop="84767" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90102" stop="90010"/>
              <exon start="87340" stop="87235"/>
              <exon start="86672" stop="86595"/>
              <exon start="86472" stop="86342"/>
              <exon start="85876" stop="85831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90091" stop="90010"/>
              <exon start="87340" stop="87235"/>
              <exon start="86672" stop="86595"/>
              <exon start="86472" stop="86342"/>
              <exon start="85876" stop="85752"/>
              <exon start="85127" stop="84767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86435" stop="86342"/>
              <exon start="85876" stop="85752"/>
              <exon start="85127" stop="84857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227628" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86382" stop="86342"/>
              <exon start="85876" stop="85752"/>
              <exon start="85127" stop="84857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227269" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATGTCTTCAAATTTGGAATTGGAAGTGAGGTCTTCAGCTACAGTTCCTTCTCTGCAAGTTCCAACCTTTCATCATACCCCTTATTATTG : TGAGGAAAACATCTACCTGCTATGCAAAAAGCTATGTGATGACGGACTGGCAGATCCTAATGGTTCTGATCTGTTTGTTATTTTCATTTCCAATGAGAAGAAGCAG : ATTCCTCTGTGGCATCAGAAGGCTAGCCAGCGAGCAGAGGGAGTTATTCTGTGGGACTATCATGTCATCTGTGTACAG : AAGAAGAGAAATGAGAACTCTTCGTCACTAGTGTGGGATTTAGATTCAAGTCTTCCGTTTCCATCATCTCTTGGCACTTATGTCGCTGACAGCATTCGTCCATCAATTCAGATATTTTCTGAATTCAAAAG : GTTTTTTCGAGTTGTGCATGCCCCTATATTCCTCCGACACTTCGCATCAGATAGAAGACATATGAAGGATTCTGCTGGAAACTGGACTGCAGACCCGCCATCATATGAAGCTATTGTTGCTGAAG : ATGGAGCTGTACACAACCTGAACGAGTACATTACAGTCTCTCCCGATGATGTAGTGAAGAATGTGGAAGCTGATACCGTCAATGTTGTTCTCTCCGAGAAACTTGGTGTAGTAATTGGTGAAGATGATTTGTTGGGATTTTTCTCTTTGATTTCCTGATGAGAGTTGAGAAAAAACTTGCTAGCTTGAAAGATGAAATGATGATCTTGGATTTTTACATGTAAAAAGAAAAAGAAAGTGTCTTGTGAGAGTTTTTGCAAATGGAATGGAAAATATTCTTGTGTTAGACAAGTTCTTGTTTTTGGGGAGTTATTTTATTTTATAGAACTTGTATAGACATTTTGATGCCCGACCCCGTGCAT</gDNA_template>
            <first_frame> K  N  V  F  K  F  G  I  G  S  E  V  F  S  Y  S  S  F  S  A  S  S  N  L  S  S  Y  P  L  L  L  :  *  G  K  H  L  P  A  M  Q  K  A  M  *  *  R  T  G  R  S  *  W  F  *  S  V  C  Y  F  H  F  Q  *  E  E  A   : D  S  S  V  A  S  E  G  *  P  A  S  R  G  S  Y  S  V  G  L  S  C  H  L  C  T   : E  E  E  K  *  E  L  F  V  T  S  V  G  F  R  F  K  S  S  V  S  I  I  S  W  H  L  C  R  *  Q  H  S  S  I  N  S  D  I  F  *  I  Q  K  :  V  F  S  S  C  A  C  P  Y  I  P  P  T  L  R  I  R  *  K  T  Y  E  G  F  C  W  K  L  D  C  R  P  A  I  I  *  S  Y  C  C  *  R :   W  S  C  T  Q  P  E  R  V  H  Y  S  L  S  R  *  C  S  E  E  C  G  S  *  Y  R  Q  C  C  S  L  R  E  T  W  C  S  N  W  *  R  *  F  V  G  I  F  L  F  D  F  L  M  R  V  E  K  K  L  A  S  L  K  D  E  M  M  I  L  D  F  Y  M  *  K  E  K  E  S  V  L  *  E  F  L  Q  M  E  W  K  I  F  L  C  *  T  S  S  C  F  W  G  V  I  L  F  Y  R  T  C  I  D  I  L  M  P  D  P  V  H </first_frame>
            <second_frame>  K  M  S  S  N  L  E  L  E  V  R  S  S  A  T  V  P  S  L  Q  V  P  T  F  H  H  T  P  Y  Y  C :   E  E  N  I  Y  L  L  C  K  K  L  C  D  D  G  L  A  D  P  N  G  S  D  L  F  V  I  F  I  S  N  E  K  K  Q  :  I  P  L  W  H  Q  K  A  S  Q  R  A  E  G  V  I  L  W  D  Y  H  V  I  C  V  Q  :  K  K  R  N  E  N  S  S  S  L  V  W  D  L  D  S  S  L  P  F  P  S  S  L  G  T  Y  V  A  D  S  I  R  P  S  I  Q  I  F  S  E  F  K  R :   F  F  R  V  V  H  A  P  I  F  L  R  H  F  A  S  D  R  R  H  M  K  D  S  A  G  N  W  T  A  D  P  P  S  Y  E  A  I  V  A  E   : D  G  A  V  H  N  L  N  E  Y  I  T  V  S  P  D  D  V  V  K  N  V  E  A  D  T  V  N  V  V  L  S  E  K  L  G  V  V  I  G  E  D  D  L  L  G  F  F  S  L  I  S  *  *  E  L  R  K  N  L  L  A  *  K  M  K  *  *  S  W  I  F  T  C  K  K  K  K  K  V  S  C  E  S  F  C  K  W  N  G  K  Y  S  C  V  R  Q  V  L  V  F  G  E  L  F  Y  F  I  E  L  V  *  T  F  *  C  P  T  P  C   </second_frame>
            <third_frame>   K  C  L  Q  I  W  N  W  K  *  G  L  Q  L  Q  F  L  L  C  K  F  Q  P  F  I  I  P  L  I  I   : V  R  K  T  S  T  C  Y  A  K  S  Y  V  M  T  D  W  Q  I  L  M  V  L  I  C  L  L  F  S  F  P  M  R  R  S  R :   F  L  C  G  I  R  R  L  A  S  E  Q  R  E  L  F  C  G  T  I  M  S  S  V  Y  R :   R  R  E  M  R  T  L  R  H  *  C  G  I  *  I  Q  V  F  R  F  H  H  L  L  A  L  M  S  L  T  A  F  V  H  Q  F  R  Y  F  L  N  S  K   : G  F  F  E  L  C  M  P  L  Y  S  S  D  T  S  H  Q  I  E  D  I  *  R  I  L  L  E  T  G  L  Q  T  R  H  H  M  K  L  L  L  L  K  :  M  E  L  Y  T  T  *  T  S  T  L  Q  S  L  P  M  M  *  *  R  M  W  K  L  I  P  S  M  L  F  S  P  R  N  L  V  *  *  L  V  K  M  I  C  W  D  F  S  L  *  F  P  D  E  S  *  E  K  T  C  *  L  E  R  *  N  D  D  L  G  F  L  H  V  K  R  K  R  K  C  L  V  R  V  F  A  N  G  M  E  N  I  L  V  L  D  K  F  L  F  L  G  S  Y  F  I  L  *  N  L  Y  R  H  F  D  A  R  P  R  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90101" stop="90010"/>
                    <exon start="87340" stop="87235"/>
                    <exon start="86672" stop="86595"/>
                    <exon start="86472" stop="86342"/>
                    <exon start="85876" stop="85752"/>
                    <exon start="85127" stop="84970"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSSNLELEVRSSATVPSLQVPTFHHTPYYCEENIYLLCKKLCDDGLADPNGSDLFVIFISNEKKQIPLWHQKASQRAEGVILWDYHVICVQKKRNENSSSLVWDLDSSLPFPSSLGTYVADSIRPSIQIFSEFKRFFRVVHAPIFLRHFASDRRHMKDSAGNWTADPPSYEAIVAEDGAVHNLNEYITVSPDDVVKNVEADTVNVVLSEKLGVVIGEDDLLGFFSLIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="97263" PGL_stop="97547"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97263" e_stop="97547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="97263" e_stop="97547" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97263" stop="97547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTCTTTCGTGCTATTACTTGGGTACAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCGGATGGTTAGACCTAGAGCAACGATTGCGCCAACACCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  P  F  F  L  S  S  F  V  L  L  L  G  Y  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  G  W  L  D  L  E  Q  R  L  R  Q  H  Q  H  R  Q  D  K  K  R  L  S  Q  P  L  G  L  * </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  L  S  C  Y  Y  L  G  T  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  T  *  S  N  D  C  A  N  T  N  I  G  K  T  R  S  V  *  A  S  H  W  G  C   </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  F  R  A  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  R  M  V  R  P  R  A  T  I  A  P  T  P  T  S  A  R  Q  E  A  S  E  P  A  T  G  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0114C15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="100263" PGL_stop="97625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100263" e_stop="97625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="100263" e_stop="97625" e_length="2639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100263" stop="99551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100263" stop="99668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100263" stop="99738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100192" stop="99513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100192" stop="99834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99743" stop="99085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99674" stop="98913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99674" stop="99014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99447" stop="98905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99271" stop="98941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99064" stop="98506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99060" stop="98297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98980" stop="98191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98978" stop="98445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98904" stop="98207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98343" stop="97625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98340" stop="97678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGAGAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATTTAGCCAAAACTCACACTTGGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTACTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGCAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTCCTCAACAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAAAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGAACCACCGAAACCGACTTAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGCTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCAAAGTCATACCCAAAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATATGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTGCCATGTTGTGATGTAGTGGCTCATGTTTTCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCTGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATTTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATGGGCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCGGATTGATCATCTCTGGGGTAGGTTGGGATGGAAATTCCTCATTTTGCACGTGTTCATTCTCCCCTTCCTCACCCTCTCTTACCACTTCCTCAGTTGGTGGAGGAGTCACCGCCCTAGTATCAGACGGGCT</gDNA_template>
            <first_frame> E  S  L  E  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  F  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  T  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  A  M  P  I  P  R  L  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  L  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  P  Q  Q  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  A  K  I  N  I  P  I  W  W  H  T  R  K  I  C  K  E  H  I  Q  K  L  T  N  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  W  R  K  Q  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  M  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  C  L  S  I  A  P  A  M  L  *  C  S  G  S  C  F  P  I  T  S  T  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  H  W  G  S  I  T  L  F  W  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  G  V  K  H  R  S  L  R  E  V  L  T  S  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  L  *  C  R  C  H  G  E  F  I  W  L  H  S  F  H  L  Y  H  E  I  Y  H  F  L  E  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  F  H  K  T  T  N  P  L  L  W  T  E  T  K  L  S  G  I  S  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  L  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  R  W  L  T  L  N  M  *  P  P  P  H  F  G  I  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  F  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  T  C  H  Y  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  G  L  I  I  S  G  V  G  W  D  G  N  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G   </first_frame>
            <second_frame>  N  P  L  R  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  F  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  Q  C  P  Y  L  V  *  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  S  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  F  L  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  R  N  T  S  R  N  S  R  T  T  E  T  D  L  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  A  L  A  L  Q  S  K  I  A  N  C  G  E  S  K  V  I  P  K  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  C  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  H  V  F  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  A  M  V  N  S  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  W  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  L  V  I  M  G  Q  *  S  D  V  E  M  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  G  P  D  P  D  Q  T  T  H  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  M  E  I  P  H  F  A  R  V  H  S  P  L  P  H  P  L  L  P  L  P  Q  L  V  E  E  S  P  P  *  Y  Q  T  G  </second_frame>
            <third_frame>   I  P  *  E  I  D  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  L  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  Y  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  S  S  T  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  C  K  N  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  P  P  K  P  T  *  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  L  *  H  Y  N  P  R  S  Q  I  V  E  K  A  K  S  Y  P  K  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  Y  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  L  S  V  H  C  P  C  H  V  V  M  *  W  L  M  F  S  H  H  L  D  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  P  L  G  V  Y  N  S  V  L  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  W  S  Q  A  *  V  S  Q  R  S  V  D  Q  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  S  L  M  S  M  P  W  *  I  H  L  A  S  L  L  P  P  L  P  R  N  L  P  L  L  G  R  I  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  L  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  E  W  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  P  L  V  D  T  Q  Y  V  T  A  T  T  F  W  H  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  F  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  W  A  S  S  Q  T  W  K  C  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  G  L  T  L  I  R  Q  P  T  K  I  S  E  N  R  I  D  H  L  W  G  R  L  G  W  K  F  L  I  L  H  V  F  I  L  P  F  L  T  L  S  Y  H  F  L  S  W  W  R  S  H  R  P  S  I  R  R  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98832" stop="98578"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSCFPITSTILVTTITSTTTSSRITASTMTTSTSSHWGSITLFWTIPPNMSSLPTSITLSGVKHRSLREVLTSLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99536" stop="99291"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSMQKSISLSGGIPGRSARNTSRNSRTTETDLIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99999" stop="99760"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSRGIRKTKRHHYKFAMPIPRLKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98031" stop="97792"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIVSILRFSTLEDWRFQFQELTEKFMLITCHYGPVVRRGNVPMSNEASIRGAIVAACCTSETGGVGAENTGGA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100067" stop="99852"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNSQCPYLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98522" stop="98310"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRNLFDVDAMVNSSGFTPSTSTTKSTTSWKDFAVAATCKAEIRNSDLNPFTKRRIRSCGLKQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97831" stop="97625"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRGLTLIRQPTKISENRIDHLWGRLGWKFLILHVFILPFLTLSYHFLSWWRSHRPSIRRA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="8"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99558" stop="99358"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNGASTRFKINAKINIPIWWHTRKICKEHIQKLTNHRNRLNRRYLGSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="97826" PGL_stop="98163"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97826" e_stop="98163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="97826" e_stop="98163" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97826" stop="98163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245958" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACATTTCCACGTCTGACTACTGGCCCATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAAATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAATGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACGGAGGCACCACCTATGACTTGG</gDNA_template>
            <first_frame> P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  *  *  Q  V  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  K  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  M  P  K  C  G  G  G  H  I  L  S  V  N  Q  R  R  H  H  L  *  L   </first_frame>
            <second_frame>  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  H  F  H  V  *  L  L  A  H  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  N  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  C  Q  N  V  V  A  V  T  Y  *  V  S  T  N  G  G  T  T  Y  D  L  </second_frame>
            <third_frame>   G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  I  S  T  S  D  Y  W  P  I  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  T  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97828" stop="98163"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFRGTTCSHYGSSYGCLIGHRHISTSDYWPIMTSDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHIECQPTEAPPMTW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="98247" PGL_stop="99691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98247" e_stop="98419"/>
            <exon e_start="99164" e_stop="99691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.977"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="98247" e_stop="98419" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98420" i_stop="99163" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.913">
            <gDNA_exon_boundary e_start="99164" e_stop="99691" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98247" stop="98419"/>
              <exon start="99164" stop="99691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGATGTAATTTTGGGTATGACTTTGCTTTCTCCACAATTTGCGATCTTGGATTGTAATGCTAAAGCGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTAAGTCGGTTTCGGTGGTTCGTGAGTTTCTGGATGTGTTCCTTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGATTTTTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTGTTGAGGAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGAGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  R  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  F  G  Y  D  F  A  F  S  T  I  C  D  L  G  L  *  C  *  S  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  F  L  H  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  T  T  S  R  V  V  E  E  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  *  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  L  L  S  P  Q  F  A  I  L  D  C  N  A  K  A  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  K  S  V  S  V  V  R  E  F  L  D  V  F  L  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  R  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  E  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  F  V  S  V  H  K  S  G  F  V  V  L  *  K  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  S  K  :  K  W  M  I  L  M  *  F  W  V  *  L  C  F  L  H  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  I  F  A  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  H  N  F  K  S  C  *  G  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  R  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98248" stop="98419"/>
                    <exon start="99164" stop="99690"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEMDDFDVILGMTLLSPQFAILDCNAKAVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIKSVSVVREFLDVFLADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLRKGFIRPSASPWGAPVLFVKKKDESFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="101744" PGL_stop="101568"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101744" e_stop="101568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="101744" e_stop="101568" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101744" stop="101568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTCGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACTAAATTCTATCACACACGCACGAAGCATATCCTCCAATACTTGAATTGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  L  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  S  S  D  S  Y  Y  C  M  K  I  P  L  R  V  R  S  Y  P  N  G  H  *  I  L  S  H  T  H  E  A  Y  P  P  I  L  E  L  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  R  V  I  A  I  I  V  *  K  F  R  *  G  *  E  A  I  P  M  A  T  K  F  Y  H  T  R  T  K  H  I  L  Q  Y  L  N  C  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0114C15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="103973" PGL_stop="102981"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103973" e_stop="103485"/>
            <exon e_start="103380" e_stop="102981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.934"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="103973" e_stop="103485" e_length="489"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103484" i_stop="103381" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.913">
            <gDNA_exon_boundary e_start="103380" e_stop="102981" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103973" stop="103636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103802" stop="103485"/>
              <exon start="103380" stop="102981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCGATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTCGGTTCGTGACACCCGATCCCCTAAATCTATGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCATGACACCCGATCCCTTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTAC : GTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCAATCCCCTAATCTCCTTCCATCAATTCATCAAACCTTCTTTCTTACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCATCATCATTAAAAAGAGATTAGGTTTTTATCAAGATTTGGGATTCAATAACTTCATCATGCTTAATATAATCACAATTATATAATCACGTTCATGCATGCATACAATTAAGCACATAGCAGGGTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATAACCTACCTCCACCGAAGAATT</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  N  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  D  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  Q  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  M  C  R  F  V  T  P  D  P  L  N  L  C  V  G  S  *  H  P  I  P  *  I  Y  V  S  V  H  D  T  R  S  L  K  S  T  C  R  F  V  T  P  D  P  L  I  L  R  V  G  S  *  H  P  I  P  *  F  Y  :  V  S  V  R  D  T  R  S  P  N  S  T  C  R  F  V  T  P  D  P  L  I  L  R  V  G  S  *  H  P  I  P  *  S  P  S  I  N  S  S  N  L  L  S  Y  Q  G  I  I  N  L  I  T  L  V  H  Q  A  F  S  L  T  K  A  S  S  L  K  R  D  *  V  F  I  K  I  W  D  S  I  T  S  S  C  L  I  *  S  Q  L  Y  N  H  V  H  A  C  I  Q  L  S  T  *  Q  G  L  Q  Y  Y  Q  Y  I  S  F  S  I  K  S  L  L  *  K  H  E  N  H  N  L  P  P  P  K  N  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  I  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  N  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  C  V  G  S  *  H  P  I  P  *  I  Y  V  S  V  R  D  T  R  S  P  K  S  T  C  R  F  M  T  P  D  P  L  N  L  R  V  G  S  *  H  P  I  P  *  F  Y  V  S  V  R  D  T  R  S  P  N  S  T :   C  R  F  V  T  P  D  P  L  I  L  R  V  G  S  *  H  P  I  P  *  F  Y  V  S  V  R  D  T  Q  S  P  N  L  L  P  S  I  H  Q  T  F  F  L  T  K  A  S  S  I  S  L  L  *  F  I  K  P  S  P  L  P  R  H  H  H  *  K  E  I  R  F  L  S  R  F  G  I  Q  *  L  H  H  A  *  Y  N  H  N  Y  I  I  T  F  M  H  A  Y  N  *  A  H  S  R  V  Y  N  T  T  N  T  Y  H  S  L  L  R  V  Y  Y  E  S  M  K  T  I  T  Y  L  H  R  R  I </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  R  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  R  D  T  R  S  P  K  S  M  C  R  F  V  T  P  D  P  L  N  L  R  V  G  S  *  H  P  I  P  *  I  Y  V  S  V  R  D  T  R  S  P  N  S  T  C  R  F  V  T  P  D  P  L  I  L   : R  V  G  S  *  H  P  I  P  *  F  Y  V  S  V  R  D  T  R  S  P  N  S  T  C  R  F  V  T  P  N  P  L  I  S  F  H  Q  F  I  K  P  S  F  L  P  R  H  H  Q  S  H  Y  F  S  S  S  S  L  L  P  Y  Q  G  I  I  I  K  K  R  L  G  F  Y  Q  D  L  G  F  N  N  F  I  M  L  N  I  I  T  I  I  *  S  R  S  C  M  H  T  I  K  H  I  A  G  F  T  I  L  P  I  H  I  I  L  Y  *  E  F  T  M  K  A  *  K  P  *  P  T  S  T  E  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103351" stop="103106"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYVSVRDTRSPNSTCRFVTPNPLISFHQFIKPSFLPRHHQSHYFSSSSLLPYQGIIIKKRLGFYQDLGFNNFIMLNIITII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="102981" PGL_stop="103381"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102981" e_stop="103381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="102981" e_stop="103381" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102981" stop="103381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGTTTGATGAATTGATGGAAGGAGATTAGGGGATTGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACG</gDNA_template>
            <first_frame> N  S  S  V  E  V  G  Y  G  F  H  A  F  I  V  N  S  *  *  R  M  I  C  I  G  S  I  V  N  P  A  M  C  L  I  V  C  M  H  E  R  D  Y  I  I  V  I  I  L  S  M  M  K  L  L  N  P  K  S  *  *  K  P  N  L  F  L  M  M  M  P  W  *  G  R  R  L  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  W  K  E  I  R  G  L  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T   </first_frame>
            <second_frame>  I  L  R  W  R  *  V  M  V  F  M  L  S  *  *  T  L  N  R  E  *  Y  V  L  V  V  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  *  A  *  *  S  Y  *  I  P  N  L  D  K  N  L  I  S  F  *  *  *  C  L  G  K  G  E  G  L  M  N  *  S  N  E  I  D  D  A  L  V  R  K  K  V  *  *  I  D  G  R  R  L  G  D  W  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  </second_frame>
            <third_frame>   F  F  G  G  G  R  L  W  F  S  C  F  H  S  K  L  L  I  E  N  D  M  Y  W  *  Y  C  K  P  C  Y  V  L  N  C  M  H  A  *  T  *  L  Y  N  C  D  Y  I  K  H  D  E  V  I  E  S  Q  I  L  I  K  T  *  S  L  F  N  D  D  A  L  V  R  E  K  A  *  *  T  K  V  M  R  L  M  M  P  W  *  E  R  R  F  D  E  L  M  E  G  D  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0114C15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="103646" PGL_stop="104124"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103646" e_stop="104124"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="103646" e_stop="104124" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103646" stop="103884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103647" stop="104124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  I  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  R  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  R  V  L  Y  *  P  L  L  L  C  S  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  H  E  P  T  H  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  L  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  I  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  V  F  C  T  D  P  Y  F  Y  V  L  F  L  F  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   T  N  R  H  I  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  S  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  F  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  I  V  F  N  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103918" stop="104124"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYLVYIDFYFELADDIYSVPCFVLTPTFMFSSCLFVECSKRAIVFNSTVIQASLTTSEIQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 211 chains have been computed
$ 
$ memory statistics:
$ 948928 bytes spliced alignments in total
$ 120 spliced alignments have been stored
$ 7907 bytes was the average size of a spliced alignment
$ 33504 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1595 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 268 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-17 21:46:33
-->
