<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 04:26:27"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E336987" ref_strand="+" ref_description="SGN-E336987 [cTOE-5-N4]">
      <seq>tccattaaagggaagagaagcatagagttgagtttgtgattgcatttccgcaaaacggcatcgtgtttttgatcgataatacttcgtagacaatgtttagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggttatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctggcgtctgttaacaaggctaattctgagctgtcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggacttactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="52" stop="1043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="352" g_stop="743" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E336987" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="352" e_stop="743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTAAAGGGAAGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATG</genome_strand>
        <mrna_strand>TCCATTAAAGGGAAGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAG--ACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E704204" ref_strand="+" ref_description="SGN-E704204 [FA23CE10]">
      <seq>gggaagagaagcatagagtcgagtttgtgattgcatttccgcaaaacggcatcgtttttttgatcgataatacttcgtagacacaatgtttagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggttatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctggcgtctgttaacaaggctaattctgagctgtcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggacttactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtctggttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaactgtcctagcggtaactactttgagtatcaagcttttgccattggatctcggtcacaagctgcaaaaacgtacttggaacgtaagtttgagactttcatggattcttcacgtgaaagcctgcttaaggatgcactctttgctctgagagaaactctgcaaggggaaaaactgacaagctccaattgcacggtggctgtggtaggagtaggagaggctttccatacactggacaaggaaaccatacaagcattgatcaatgaatttgagatagctggagaagatgctcctgccgaagtcccggaggaggctgcaactgatgaaccagcagcacctgaagaaggtgctgcccctgctgatcaaggagctgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="61" stop="4448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="361" g_stop="796" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="4148" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="897" r_length="461" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E704204" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="361" e_stop="796"/>
          <exon e_start="3688" e_stop="4148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCC</genome_strand>
        <mrna_strand>GGGAAGAGAAGCATAGAGTCGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTTTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGTCCTAGCGGTAACTACTTTGAGTATCAAGCTTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACGTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACACTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAGGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E710568" ref_strand="+" ref_description="SGN-E710568 [FA55DC10]">
      <seq>gaatagaagcatagagtcgagtttgtgattgcatttccgcaaaacggcatcgatttttttgatcgataatacttcgtagacacaatgtttagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggttatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctggcgtctgttaacaaggctaattctgagctgtcttctcactcgaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggacttactgctgacggccgtgtactttctcgctatatgcgcactgagtgcattaactatagttactcttatgagtcgccgttacctgtcgggcgtctggttgttcagcttgctgataaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="63" stop="1093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="363" g_stop="793" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E710568" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="363" e_stop="793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCG-TGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCT</genome_strand>
        <mrna_strand>GAATAGAAGCATAGAGTCGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGATTTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACTCGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGCTATATGCGCACTGAGTGCATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E707598" ref_strand="+" ref_description="SGN-E707598 [FA33BH01]">
      <seq>cgataagcatagagtcgagtttgtgattgcatttccgcaaaacggcatcgtttttttgatcgataatacttcgtagacacaatgtttagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggttatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctggcgtctgttaacaaggctaattctgagctgtcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggacttactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtctggttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaactgtcctagcggtaactactttgagtatcaagcttttgccattggatctcggtcacaagctgcaaaaacgtacttggaacgtaagtttgagactttcatggattcttcacgtgaaagcctgcttaaggatgcactctttgctctgagagaaactctgcaaggggaaaaactgacaagctccaattgcacggtggctgtggtaggagtaggagaggctttccatacactggacaaggaaaccatacaagcattgatcaatgaatttgagatagctggagaagatgctcctgccgaaatcccgggagaggctgcaacttatgaaccagcagcacctgaagaaagtgctgcccctgctgatcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="66" stop="4439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="365" g_stop="796" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="4139" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="884" r_length="452" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E707598" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="365" e_stop="796"/>
          <exon e_start="3688" e_stop="4139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGG</genome_strand>
        <mrna_strand>CGATAAGCATAGAGTCGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTTTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGTCCTAGCGGTAACTACTTTGAGTATCAAGCTTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACGTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACACTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAATCCCGGGAGAGGCTGCAACTTATGAACCAGCAGCACCTGAAGAAAGTGCTGCCCCTGCTGATCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E724932" ref_strand="+" ref_description="SGN-E724932 [FC25CC10]">
      <seq>ggccgaattggtgattgcatttccccaaaacggcatcgtttttttgatcgataatacttcgtagacacaatgtttagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggttatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctggcgtctgttaacaaggctaattctgagctgtcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggacttactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtctggttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaactgtcctagcggtaactactttgagtatcaagcttttgccattggatctcggtcacaagctgcaaaaacgtacttggaacgtaagtttgaaactttcatggattcttcacgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="81" stop="4191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="377" g_stop="796" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3891" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="624" r_length="204" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E724932" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="377" e_stop="796"/>
          <exon e_start="3688" e_stop="3891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAA</genome_strand>
        <mrna_strand>GGCCGAATTGGTGATTGCATTTCCCCAAAACGGCATCGTTTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGTCCTAGCGGTAACTACTTTGAGTATCAAGCTTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACGTACTTGGAACGTAAGTTTGAAACTTTCATGGATTCTTCACGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E286683" ref_strand="+" ref_description="SGN-E286683 [cLES-14-I15]">
      <seq>ggcatcgtgtttttgatcgataatacttcgtagacacaatgtttagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggttatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctggcgtctgttaacaaggctaattctgagctgtcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggacttactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtctggttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="108" stop="4076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="408" g_stop="796" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3776" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="478" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E286683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="408" e_stop="796"/>
          <exon e_start="3688" e_stop="3776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAA</genome_strand>
        <mrna_strand>GGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E724207" ref_strand="+" ref_description="SGN-E724207 [FC23BF04]">
      <seq>tggtcgccggcgggaaggttatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctggcgtctgttaacaaggctaattctgagctgtcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggacttactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtctggttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaactgtcctagcggtaactactttgagtatcaagcttttgccattggatctcggtcacaagctgcaaaaacgtacttggaacgtaagtttgagactttcatggattcttcacgtgaaagcctgcttaaggatgcactctttgctctgagagaaactctgcaaggggaaaaactgacaagctccaattgcacggtggctgtggtaggagtaggagaggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="182" stop="4295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="482" g_stop="796" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3995" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="623" r_length="308" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E724207" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="482" e_stop="796"/>
          <exon e_start="3688" e_stop="3995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTT</genome_strand>
        <mrna_strand>TGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGTCCTAGCGGTAACTACTTTGAGTATCAAGCTTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACGTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E302090" ref_strand="+" ref_description="SGN-E302090 [cLEW-19-O1]">
      <seq>aaactccacaaatacttcagttatttttatagtactgctgaaatggtggaagtttttttcatctgggtaatagcttgaacacctttattgcccttttgtgcagttcttgtaaaatgcctgctcattttacacttgtcaaatatccattagatcaatttgaaacttgggtgaaaaaagttccatatttaagatttagcagagaaccatctaagttcaaattatgattttctgcacttttagtgcatgcaaatgcttaaacatattccataagagtttgtctttttctagagaagtaagtagtgttatatatcatattctttatgttttgtttgaatacaagtggggccactcgacactagtgcagatccagaagtcacactcatcatcacctaagatacaaccaatgaatgtataatacgacaaactcgctttgtttcactttataagataatatgattgggtgttgagtctaagaaagaaaagaagacctctacaatttgcggtcttaaatatgtcatgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="1149" stop="2271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1449" g_stop="1971" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E302090" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1449" e_stop="1971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATAT</genome_strand>
        <mrna_strand>AAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E236981" ref_strand="-" ref_description="SGN-E236981 [cLEL-7-K4]">
      <seq>caaaaacctacttggaacgtaagtttgagactttcatggattcttcacgtgaaagcctgcttaaggatgcactctttgctctgagagaaactctgcaaggggaaaaactgacaagctccaattgcacggtggctgtggtaggagtaggagaggctttccataccctggacaaggaaaccatacaagcattgatcaatgaatttgagatagctggagaagatgctcctgccgaagtcccggaagaggctgcaactgatgaaccagcagcacctgaagaaggtgctgcccctgctgatcaaggagctgccccaatggatatttgataatgttatgtcttcctttaggcctcacttctttcatattcagagatttcttcttagaatgttgagattttgtgtggcacaatgggttatattttctgcttggatgttttattatgcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="3539" stop="4580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3839" g_stop="4279" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="464"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E236981" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236981" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3839" e_stop="4279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCA</genome_strand>
        <mrna_strand>CAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E352352" ref_strand="+" ref_description="SGN-E352352 [cTOS-9-K6]">
      <seq>tcacgtgaaagcctgcttaaggatgcactctttgctctgagagaaactctgcaaggggaaaaactgacaagctccaattgcacggtggctgtggtaggagtaggagaggctttccataccctggacaaggaaaccatacaagcattgatcaatgaatttgagatagctggagaagatgctcctgccgaagtcccggaagaggctgcaactgatgaaccagcagcacctgaagaaggtgctgcccctgctgatcaaggagctgccccaatggatatttgataatgttatgtcttcctttaggcctcacttctttcatattcagagatttcttcttagaatgttgagattttgtgtggcacaatgggttatattttctgcttggatgttttattatgcaatcatgctttactttggtccaaacatctttaaaactcatgcttctgaagttgaactaaaaacagctttaagtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="3583" stop="4653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3883" g_stop="4349" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="471" polyA_stop="482"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E352352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3883" e_stop="4349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCAATCATGCTTTACTTTGGTCCAAACATCTTTAAAACTCATGCTTCTGAAGTTGAACTAAAAACAGCTTTAA</genome_strand>
        <mrna_strand>TCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCAATCATGCTTTACTTTGGTCCAAACATCTTTAAAACTCATGCTTCTGAAGTTGAACTAAAAACAGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E355276" ref_strand="+" ref_description="SGN-E355276 [cTOS-18-F14]">
      <seq>taaggatgcactctttgctctgagagaaactctgcaaggggaaaaactgacaagctccaattgcacggtggctgtggtaggagtaggagaggctttccataccctggacaaggaaaccatacaagcattgatcaatgaatttgagatagctggagaagatgctcctgccgaagtcccggaagaggctgcaactgatgaaccagcagcacctgaagaaggtgctgcccctgctgatcaaggagctgccccaatggatatttgataatgttatgtcttcctttaggcctcacttctttcatattcagagatttcttcttagaatgttgagattttgtgtggcacaatgggttatattttctgcttggatgttttattatgcaatcatgctttactttggtccaaacatctttaaaactcatgcttctgaagttgaactaaaaacagctttaagtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="3600" stop="4653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3900" g_stop="4349" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="471"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E355276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3900" e_stop="4349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCAATCATGCTTTACTTTGGTCCAAACATCTTTAAAACTCATGCTTCTGAAGTTGAACTAAAAACAGCTTTAA</genome_strand>
        <mrna_strand>TAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCAATCATGCTTTACTTTGGTCCAAACATCTTTAAAACTCATGCTTCTGAAGTTGAACTAAAAACAGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E237179" ref_strand="-" ref_description="SGN-E237179 [cLEL-7-K14]">
      <seq>ctttccatcccctggacaaggaaaccatacaagcattgatcaatgaatttgagatagctggagaagatgctcctgccgaagtcccggaagaggctgcaactgatgaaccagcagcacctgaagaaggtgctgcccctgctgatcaaggagctgccccaatggatatttgataatgttatgtcttcctttaggcctcacttctttcatattcagagatttcttcttagaatgttgagattttgtgtggcacaatgggttatattttctgcttggatgttttattatgcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="3692" stop="4580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3992" g_stop="4279" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="289" polyA_stop="311"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E237179" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237179" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3992" e_stop="4279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCA</genome_strand>
        <mrna_strand>CTTTCCATCCCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E238576" ref_strand="+" ref_description="SGN-E238576 [cLED-17-P13]">
      <seq>aactgaaaagagaggacttcaaaggttctaagtggctggtactgagatatgccatactgaatgtagaagttattaaggtggccatcaaaatagcaaaggaagaaggtctttttgtttctctagatcttgccagctttgagatggtgaggaagtttaaatcacctctaattgaattattggagtcgggaaacatagacctttgcttcgcaaacgaggatgaagcaactgagctgctaaggggtgaagagaaagcagatcctgatgcagcacttgaatatttggctaaatattgcaagtgggctgttgtcaccttagctcaaaacggatgcattgcgaaacatgagaaagagtttgtgcgtgttccagcaattggcgaagcgaaagttactgatgctacaggtgcaggagatctgtttgcaagtggatttttgtatggattggtaagaggactgtcactggaggaatgttgtcgggtgggttcttgcagcggtggttctgtgattcgatctcttgggggtgaggtaacacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="6964" stop="4850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6664" g_stop="6633" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="140" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="238" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5821" g_stop="5710" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="350" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5709" i_stop="5332" i_length="378">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5331" g_stop="5150" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="532" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E238576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6664" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5710"/>
          <exon e_start="5331" e_stop="5150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAGGTATCTGTAATCCTTCCCCACCTGCAGTCTATCTTTAAGACAAAACGATTGAAGAAGAATCTTTTGTTCTGATCTTCTGGATGTTCATATCATTTAAAGATGGTAATCGAGAGTCCCCCAACTAAGTGGTTCTTGTCATTGTTATAGTAAACTAGTAGCAATTTGAACTTTTCTCTCCATTTCATTTTTATGTGATTATATTTGACTGGCCGTGGAGTTTAACGAAGAAGTAATTTTTAAATAAACTTGTGGTTTTAAACATTATGTAGAGAGTCATCTAAAAAGGAAAGAGTATCACATAAGTTGATGATTTGTGATCTTTACGTAGTGTTTTTTATTAGGATTATTATAAACATGAAGTATTATTTTGGTTTTCAGTTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATGGATTGGTAAGAGGACTGTCACTGGAGGAATGTTGTCGGGTGGGTTCTTGCAGCGGTGGTTCTGTGATTCGATCTCTTGGGGGTGAGGTAACACCTGA</genome_strand>
        <mrna_strand>AACTGAAAAGAGAGGACTTCAAAGGTTCTAAG...............................................................................................................................................................................................................TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAG............................................................................................................GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATGGATTGGTAAGAGGACTGTCACTGGAGGAATGTTGTCGGGTGGGTTCTTGCAGCGGTGGTTCTGTGATTCGATCTCTTGGGGGTGAGGTAACACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E288883" ref_strand="+" ref_description="SGN-E288883 [cLES-17-L22]">
      <seq>gaaagttcaggcagatgaactgaaaagagaggacttcaaaggttctaagtggctggtactgagatatgccatactgaatgtagaagttattaaggtggccatcaaaatagcaaaggaagaaggtctttttgtttctctagatcttgccagctttgagatggtgaggaagtttaaatcacttctaattgaattattggagtcgggaaacatagacctttgcttcgcaaacgaggatgaagcaactgagctgctaaggggtgaagagaaagcagatcctgatgcagcacttgaatatttggctaaatattgcaagtgggctgttgtcaccttagctcaaaacggatgcattgcgaaacatgagaaagagtttgtgcgtgttccagcaattggcgaagcgaaagttactgatgctacaggtgcaggagatctgtttgcaagtggatttttgtatggattggtaagaggactgtcactggaggaatgttgtccggtgggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="6975" stop="4901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6793" g_stop="6784" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="49" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="157" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="255" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5821" g_stop="5710" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="367" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5709" i_stop="5332" i_length="378">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5331" g_stop="5201" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="498" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E288883" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6793" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5710"/>
          <exon e_start="5331" e_stop="5201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAGGTATCTGTAATCCTTCCCCACCTGCAGTCTATCTTTAAGACAAAACGATTGAAGAAGAATCTTTTGTTCTGATCTTCTGGATGTTCATATCATTTAAAGATGGTAATCGAGAGTCCCCCAACTAAGTGGTTCTTGTCATTGTTATAGTAAACTAGTAGCAATTTGAACTTTTCTCTCCATTTCATTTTTATGTGATTATATTTGACTGGCCGTGGAGTTTAACGAAGAAGTAATTTTTAAATAAACTTGTGGTTTTAAACATTATGTAGAGAGTCATCTAAAAAGGAAAGAGTATCACATAAGTTGATGATTTGTGATCTTTACGTAGTGTTTTTTATTAGGATTATTATAAACATGAAGTATTATTTTGGTTTTCAGTTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATGGATTGGTAAGAGGACTGTCACTGGAGGAATGTTGTCGGGTGGGTTC</genome_strand>
        <mrna_strand>GAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAG...............................................................................................................................................................................................................TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACTTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAG............................................................................................................GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATGGATTGGTAAGAGGACTGTCACTGGAGGAATGTTGTCCGGTGGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E243688" ref_strand="+" ref_description="SGN-E243688 [cLED-35-A11]">
      <seq>aactgaaaagagaggacttcaaaggttctaagtggctggtactgagatatgccatactgaatgtagaagttattaaggtggccatcaaaatagcaaaggaagaaggtctttttgtttctctagatcttgccagctttgagatggtgaggaagtttaaatcacctctaattgaattattggagtcgggaaacatagacctttgcttcncaaacgaggatgaagcaactgagctgctaaggggtgaagagaaagcagatcctgatgcagcacttgaatatttggctaaatattgcaagtgggctgttgtcaccttagctcaaaacggatgcattgcgaaacatgagaaagagtttgtgcgtgttccancaattggcgaagcgaaagttactgatgctacaggtgcacgagatctgtttgcaagtggatttttgtatggatcggtaagaggactgtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="6964" stop="4925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6664" g_stop="6633" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="140" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="238" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5821" g_stop="5710" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="350" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5709" i_stop="5332" i_length="378">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5331" g_stop="5225" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="457" r_length="107" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E243688" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6664" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5710"/>
          <exon e_start="5331" e_stop="5225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAGGTATCTGTAATCCTTCCCCACCTGCAGTCTATCTTTAAGACAAAACGATTGAAGAAGAATCTTTTGTTCTGATCTTCTGGATGTTCATATCATTTAAAGATGGTAATCGAGAGTCCCCCAACTAAGTGGTTCTTGTCATTGTTATAGTAAACTAGTAGCAATTTGAACTTTTCTCTCCATTTCATTTTTATGTGATTATATTTGACTGGCCGTGGAGTTTAACGAAGAAGTAATTTTTAAATAAACTTGTGGTTTTAAACATTATGTAGAGAGTCATCTAAAAAGGAAAGAGTATCACATAAGTTGATGATTTGTGATCTTTACGTAGTGTTTTTTATTAGGATTATTATAAACATGAAGTATTATTTTGGTTTTCAGTTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATGGATTGGTAAGAGGACTGTCACT</genome_strand>
        <mrna_strand>AACTGAAAAGAGAGGACTTCAAAGGTTCTAAG...............................................................................................................................................................................................................TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCNCAAACGAGGATGAAGCAACTGAGCTGCTAAG............................................................................................................GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCGTGTTCCANCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCACGAGATCTGTTTGCAAGTGGATTTTTGTATGGATCGGTAAGAGGACTGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E240044" ref_strand="+" ref_description="SGN-E240044 [cLED-32-K18]">
      <seq>aactgaaaagagaggacttcaaaggttctaagtggctggtactgagatatgccatactgaatgtagaagttattaaggtggccatcaaaatagcaaaggaagaaggtctttttgtttctctagatcttgccagctttgagatggtgaggaagtttaaatcacctctaattgaattattggagtcgggaaacatagacctttgcttcgcaaacgaggatgaagcaactgagctgctaaggggtgaagagaaagcagatcctgatgcagcacttgaatatttggctaaatattgcaagtgggctgttgtcaccttagctcaaaacggatgcattgcgaaacatgagaaagagtttgtgcgtgttccagcaattggcgaagcgaaagttactgatgctacaggtgcaggagatctgtttgcaagtggatttttgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="6964" stop="4947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6664" g_stop="6633" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="140" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="238" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5821" g_stop="5710" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="350" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5709" i_stop="5332" i_length="378">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5331" g_stop="5247" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="435" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E240044" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6664" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5710"/>
          <exon e_start="5331" e_stop="5247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAGGTATCTGTAATCCTTCCCCACCTGCAGTCTATCTTTAAGACAAAACGATTGAAGAAGAATCTTTTGTTCTGATCTTCTGGATGTTCATATCATTTAAAGATGGTAATCGAGAGTCCCCCAACTAAGTGGTTCTTGTCATTGTTATAGTAAACTAGTAGCAATTTGAACTTTTCTCTCCATTTCATTTTTATGTGATTATATTTGACTGGCCGTGGAGTTTAACGAAGAAGTAATTTTTAAATAAACTTGTGGTTTTAAACATTATGTAGAGAGTCATCTAAAAAGGAAAGAGTATCACATAAGTTGATGATTTGTGATCTTTACGTAGTGTTTTTTATTAGGATTATTATAAACATGAAGTATTATTTTGGTTTTCAGTTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATG</genome_strand>
        <mrna_strand>AACTGAAAAGAGAGGACTTCAAAGGTTCTAAG...............................................................................................................................................................................................................TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAG............................................................................................................GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E287252" ref_strand="+" ref_description="SGN-E287252 [cLES-15-G9]">
      <seq>ttagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcttttacaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccatgtttgtctggctctgtgaaagttcaggcagatgaactgaaaagagaggacttcaaaggttctaagtggctggtactgagatatgccatactgaatgtagaagttattaaggtggccatcaaaatagcaaaggaagaaggtctttttgtttctctagatcttgccagctttgagatggtgaggaagtttaaatcacctctaattgaattattggagtcgggaaacatagacctttgcttcgcaaacgaggatgaagcaactgagctgctaaggggtgaagagaaagcagatcctgatgcagcacttgaatatttggctaaatattgcaagtgggctgttgtcaccttagctcaaaacggatgcattgcgaaacatgagaaagagtttgtgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="7359" stop="5403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7059" g_stop="6938" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="194" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="233" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="341" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="439" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5821" g_stop="5710" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="551" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E287252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7059" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG</genome_strand>
        <mrna_strand>TTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAG...............................................................................................................................................................................................................TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAG............................................................................................................GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E334793" ref_strand="+" ref_description="SGN-E334793 [cTOE-3-H10]">
      <seq>gatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccatgtttgtctggctctgtgaaagttcaggcagatgaactgaaaagagaggacttcaaaggttctaagtggctggtactgagatatgccatactgaatgtagaagttattaaggtggccatcaaaatagcaaaggaagaaggtctttttgtttctctagatcttgccagctttgagatggtgaggaagtttaaatcacctctaattgaattattggagtcgggaaacatagacctttgcttcgcaaacgaggatgaagcaactgagctgctaaggggtgaagagaaagcagatcctgatgcagcacttgaatatttggctaaatattgcaagtgggctgttgtcaccttagctcaaaacggatgcattgcgaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="7279" stop="5418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6979" g_stop="6938" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="114" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="153" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="261" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="359" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5821" g_stop="5718" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="463" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E334793" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6979" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATG</genome_strand>
        <mrna_strand>GATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAG...............................................................................................................................................................................................................TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAG............................................................................................................GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E367828" ref_strand="+" ref_description="SGN-E367828 [TUS-22-G5]">
      <seq>aactgaaaagagaggacttcaaaggttctaagtggctggtactgatatatgccatactgaatgtagaagttattaaggtggccatcaaaatagcagaggaagaaggtctttttgtttctctagatcttgccagctttgagatggtgaggaagtttaaatcacctctaattgaattattggagctccggatacatagacctttgcttcacaaacgaagatgaagcaactgaactgctaaggggtgaatacaacagcagatcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="6964" stop="5629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6664" g_stop="6633" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="140" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="239" r_length="99" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.937" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5821" g_stop="5797" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="265" r_length="26" r_score="0.840"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E367828" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6664" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAG-TCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAA-AGCAGATCCTGAT</genome_strand>
        <mrna_strand>AACTGAAAAGAGAGGACTTCAAAGGTTCTAAG...............................................................................................................................................................................................................TGGCTGGTACTGATATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAGAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGCTCCGGATACATAGACCTTTGCTTCACAAACGAAGATGAAGCAACTGAACTGCTAAG............................................................................................................GGGTGAATACAACAGCAGATCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E324696" ref_strand="+" ref_description="SGN-E324696 [cTOC-8-C16]">
      <seq>ttaatggtgaaaatcaaagtgaaagtgtgaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttgaagtatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccatattgaagactatagctggaggtagcgttgcaaatacaattagagggttggctgctggttttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcttttacaaagtggatctctcaagattgagattgaagaatggaactacagctcactgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccatgtttgtctggctctgtgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8863" stop="6489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8563" g_stop="8418" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="410" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6789" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="477" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E324696" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8563" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAG</genome_strand>
        <mrna_strand>TTAATGGTGAAAATCAAAGTGAAAGTGTGAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAC..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E341193" ref_strand="+" ref_description="SGN-E341193 [cTOE-22-C15]">
      <seq>tcaaagtgaaagtgtaaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttgaagtatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccatattgaagactatagctggaggtagcgttgcaaatacaattagagggttggctgctggttttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcttttacaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8850" stop="6515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8550" g_stop="8418" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="397" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6815" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="438" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E341193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8550" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCG</genome_strand>
        <mrna_strand>TCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E284556" ref_strand="+" ref_description="SGN-E284556 [cLES-3-P5]">
      <seq>aaaatcaaagtgaaagtgtaaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttgaagtatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccatattgaagactatagctggaggtagcgttgcaaatacaattagagggttggctgctggttttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcttttacaaagtggatctctcaagattgagattgaagaatggaactacagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8854" stop="6640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8554" g_stop="8418" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6940" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="399" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E284556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8554" e_stop="8418"/>
          <exon e_start="7201" e_stop="6940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTC</genome_strand>
        <mrna_strand>AAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E267750" ref_strand="-" ref_description="SGN-E267750 [cLEI-12-L1]">
      <seq>agtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcatcagttgaagcatttatgtttagcaatgcccttcttgtttgagattccatgcattattgagatccatgactaagtaagcacagtgcatgtggggaaatcaatgacctaaagccaaggcatgttagctatagttatattaattataatattataaaggtagagatgattggctgattggggtatgaagagccaaaagatgagtaatttccccgtaaattcagccttgtcttattgtgtttttataatgacactgtatatgaatgattggcatctgttgaattgtttggttttgaatgtagtcatctttggtcaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="11352" stop="10195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11052" g_stop="10500" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="576"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E267750" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267750" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11052" e_stop="10500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAAGCATTTATGTTTAGCAATGCCCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</genome_strand>
        <mrna_strand>AGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAAGCATTTATGTTTAGCAATGCCCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E334730" ref_strand="+" ref_description="SGN-E334730 [cTOE-3-G13]">
      <seq>ccacatgcactgtgcttacttagtcatggatctcaataatgcatggaatctcaaacaagaaggcattgctaaacataaatgcttcaactgatgaagaaatatgtttggaatgtgctgtcaatgttttatgttattccaataacaatttaccaaataaatctattgaaaatgatttctcagagttacaagcacttgtgggcgtaacttccttttccaagctgaagaatttctgggaaataaggggcaaaagtcttaactacaaagcagtgacgtaccgatgctatccaataagtttgatattatttggaagggtaacagccaatatccatgactgttctccatacagatgctcacggtgtaaaataaatctctggaaagcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="10419" stop="11404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10719" g_stop="11104" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E334730" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10719" e_stop="11104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACATGCACTGTGCTTACTTAGTCATGGATCTCAATAATGCATGGAATCTCAAACAAGAAGGGCATTGCTAAACATAAATGCTTCAACTGATGAAGAAATATGTTTGGAATGTGCTGTCAATGTTTTATGTTATTCCAATAACAATTTACCAAATAAATCTATTGAAAATGATTTCTCAGAGTTACAAGCACTTGTGGGCGTAACTTCCTTTTCCAAGCTGAAGAATTTCTGGGAAATAAGGGGCAAAAGTCTTAACTACAAAGCAGTGACGTACCGATGCTATCCAATAAGTTTGATATTATTTGGAAGGGTAACAGCCAATATCCATGACTGTTCTCCATACAGATGCTCACGGTGTAAAATAAATCTCTGGAAAGCAAAAAA</genome_strand>
        <mrna_strand>CCACATGCACTGTGCTTACTTAGTCATGGATCTCAATAATGCATGGAATCTCAAACAAGAA-GGCATTGCTAAACATAAATGCTTCAACTGATGAAGAAATATGTTTGGAATGTGCTGTCAATGTTTTATGTTATTCCAATAACAATTTACCAAATAAATCTATTGAAAATGATTTCTCAGAGTTACAAGCACTTGTGGGCGTAACTTCCTTTTCCAAGCTGAAGAATTTCTGGGAAATAAGGGGCAAAAGTCTTAACTACAAAGCAGTGACGTACCGATGCTATCCAATAAGTTTGATATTATTTGGAAGGGTAACAGCCAATATCCATGACTGTTCTCCATACAGATGCTCACGGTGTAAAATAAATCTCTGGAAAGCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E349354" ref_strand="+" ref_description="SGN-E349354 [cTOS-1-G20]">
      <seq>ttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="11657" stop="10511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11357" g_stop="10802" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E349354" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11357" e_stop="10802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAA</genome_strand>
        <mrna_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E350573" ref_strand="+" ref_description="SGN-E350573 [cTOS-5-J15]">
      <seq>ttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="11657" stop="10511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11357" g_stop="10802" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E350573" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11357" e_stop="10802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAA</genome_strand>
        <mrna_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E354403" ref_strand="+" ref_description="SGN-E354403 [cTOS-17-I14]">
      <seq>ttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="11657" stop="10511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11357" g_stop="10802" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E354403" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11357" e_stop="10802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAA</genome_strand>
        <mrna_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E352036" ref_strand="+" ref_description="SGN-E352036 [cTOS-13-B11]">
      <seq>ttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="11657" stop="10511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11357" g_stop="10803" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E352036" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11357" e_stop="10803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGA</genome_strand>
        <mrna_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E370674" ref_strand="-" ref_description="SGN-E370674 [TUS-27-O16]">
      <seq>tcattggtatgggggccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctaactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="12657" stop="10519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12357" g_stop="12251" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11414" g_stop="10822" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="700" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E370674" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370674" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12357" e_stop="12251"/>
          <exon e_start="11414" e_stop="10822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAAC</genome_strand>
        <mrna_strand>TCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E222070" ref_strand="-" ref_description="SGN-E222070 [cLEL-36-G10]">
      <seq>agatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="11566" stop="10519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11266" g_stop="10822" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="459"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E222070" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222070" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11266" e_stop="10822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAAC</genome_strand>
        <mrna_strand>AGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E305866" ref_strand="+" ref_description="SGN-E305866 [cLEX-14-P10]">
      <seq>agcaaccaactactgttaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="11643" stop="10539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11343" g_stop="10839" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E305866" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11343" e_stop="10839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATT</genome_strand>
        <mrna_strand>AGCAACCAACTACTGTTACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E745293" ref_strand="+" ref_description="SGN-E745293 [GI|47105785]">
      <seq>aggcatgtggtattcactattctgccctaccaattactctgtggaaagccttcatttctcactcaatcgtcccttttgctacacaaacaccttgactgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggggccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctaactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaactccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="17026" stop="10612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16726" g_stop="16454" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="417" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="543" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="695" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="10912" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="1198" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1199" polyA_stop="1217"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E745293" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1198</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16726" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="10912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATGTGGTATTCACTATTCTGCCCTACCAATTACTCTGTGGAAAGCCTTCATTTCTCACTCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAA</genome_strand>
        <mrna_strand>AGGCATGTGGTATTCACTATTCTGCCCTACCAATTACTCTGTGGAAAGCCTTCATTTCTCACTCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAACTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E729708" ref_strand="+" ref_description="SGN-E729708 [LA21DD12]">
      <seq>caatcaaggtcttgatcgcgnnggaaatcgncttcaaggcagccctcacatagaggaacacctgtccaggcatcggactcttatgaacatatttgataaagctccagtggtggacaaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgtgaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccacaattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcgggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctgactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcacctctctcttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16810" stop="10799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16515" g_stop="16454" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.823"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.88"/>
            <acceptor a_prob="0.949" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="206" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="332" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="484" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11099" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="800" r_length="316" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E729708" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16515" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTT</genome_strand>
        <mrna_strand>CAATCAAGGTCTTGATCGCGNNGGAAATCGNCTTCAAGGCAGCCCTCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATATTTGATAAAGCTCCAGTGGTGGACAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACAATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCGGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTGACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCACCTCTCTCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E704357" ref_strand="+" ref_description="SGN-E704357 [FA24AC07]">
      <seq>cagaaagagggctaaaccgaagaagaagaaggaggaggtcaaaaatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgtcttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatatttgataaagctccagtggtggacaaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgtgaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccacaattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcgggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctgactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16913" stop="10849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16613" g_stop="16454" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="303" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="429" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="581" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11149" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="847" r_length="266" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E704357" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16613" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGC</genome_strand>
        <mrna_strand>CAGAAAGAGGGCTAAACCG-AAGAAGAAGAAGGAGGAGGTCAAAAATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGTCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATATTTGATAAAGCTCCAGTGGTGGACAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACAATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCGGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTGACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E731938" ref_strand="+" ref_description="SGN-E731938 [LA28CE04]">
      <seq>ctctactgatcagaaagagggctaaaccgaagaagaagaaggaggaggtcaaaaatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgtcttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatatttgataaagctccagtggtggacaaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgtgaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccacaattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcgggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctgactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16923" stop="10895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16623" g_stop="16454" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="313" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="439" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="591" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11195" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="811" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E731938" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16623" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACAC</genome_strand>
        <mrna_strand>CTCTACTGATCAGAAAGAGGGCTAAACCG-AAGAAGAAGAAGGAGGAGGTCAAAAATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGTCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATATTTGATAAAGCTCCAGTGGTGGACAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACAATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCGGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTGACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E347370" ref_strand="+" ref_description="SGN-E347370 [cTOF-33-D10]">
      <seq>actccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggggccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctaactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16843" stop="10927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16543" g_stop="16454" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="234" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="360" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="512" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11227" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="700" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E347370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16543" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATA</genome_strand>
        <mrna_strand>ACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E344734" ref_strand="+" ref_description="SGN-E344734 [cTOF-21-O10]">
      <seq>agaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggggccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctaactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgcttcgtgtccatgcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16912" stop="11003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16612" g_stop="16454" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="303" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="429" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="581" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11303" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="694" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E344734" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16612" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGC-TCGTGTCCATGCAGCTG</genome_strand>
        <mrna_strand>AGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTTCGTGTCCATGCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E203932" ref_strand="+" ref_description="SGN-E203932 [cLEC-22-A23]">
      <seq>gggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtatgggcaggcaatcccgctaagtttctgaggaagctaactgatgaagagatagccttcattgctcagtcagcaaccaactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16856" stop="11030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16556" g_stop="16454" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="247" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="373" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="11415" i_length="1057">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11414" g_stop="11330" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="458" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E203932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16556" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="11414" e_stop="11330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACT</genome_strand>
        <mrna_strand>GGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E728924" ref_strand="+" ref_description="SGN-E728924 [LA19BF06]">
      <seq>cttttgctacacaaacaccttgactgcacagctctactgatcagaaagagggctaaaccgaagaagaagaaggaggaggtcaaaaatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgtcttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatatttgataaagctccagtggtggacaaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgtgaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccacaattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcgggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctgactgatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16954" stop="11066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16654" g_stop="16454" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="344" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="470" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="622" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11366" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="671" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E728924" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16654" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAG</genome_strand>
        <mrna_strand>CTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCG-AAGAAGAAGAAGGAGGAGGTCAAAAATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGTCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATATTTGATAAAGCTCCAGTGGTGGACAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACAATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCGGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTGACTGATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E314211" ref_strand="+" ref_description="SGN-E314211 [cTOA-21-K3]">
      <seq>tgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggggccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16930" stop="11994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16630" g_stop="16454" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="321" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="447" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12294" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="556" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E314211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16630" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGC</genome_strand>
        <mrna_strand>TGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E246351" ref_strand="+" ref_description="SGN-E246351 [cLEF-52-A12]">
      <seq>gagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcataaggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggggccacactgcttgatggtgttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16912" stop="12019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16613" g_stop="16454" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="304" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="430" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12319" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="514" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E246351" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16613" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATG</genome_strand>
        <mrna_strand>GAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAAGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E311777" ref_strand="+" ref_description="SGN-E311777 [cLEZ-9-M20]">
      <seq>ttgactgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16935" stop="12072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16635" g_stop="16454" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="326" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="452" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12372" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="483" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E311777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16635" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCAT</genome_strand>
        <mrna_strand>TTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E267789" ref_strand="+" ref_description="SGN-E267789 [cLEI-12-J18]">
      <seq>tttgctacacaaacaccttgactgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16952" stop="12079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16652" g_stop="16454" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="343" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="469" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12379" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="493" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E267789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16652" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCT</genome_strand>
        <mrna_strand>TTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E271448" ref_strand="+" ref_description="SGN-E271448 [cLEM-5-N11]">
      <seq>acaaacaccttgactgcacagctctactgatcagaaagagggcgaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatgggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttgacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatatggaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16944" stop="12182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16644" g_stop="16454" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="335" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12482" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="451" r_length="116" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E271448" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16644" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAAT</genome_strand>
        <mrna_strand>ACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCGAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATGGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTGACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATATGGAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E314311" ref_strand="+" ref_description="SGN-E314311 [cTOA-21-K2]">
      <seq>tgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtgggcaaatcaaatataagtcaaaaggtgctgcccaccatcataaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16930" stop="12188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16630" g_stop="16454" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="321" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12487" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="432" r_length="111" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E314311" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16630" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGA</genome_strand>
        <mrna_strand>TGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGGCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E246687" ref_strand="+" ref_description="SGN-E246687 [cLEF-45-I2]">
      <seq>tcaatcgtcccttttgctacacaaacaccttgactgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16964" stop="12211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16664" g_stop="16454" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="355" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12511" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="442" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E246687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16664" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAA</genome_strand>
        <mrna_strand>TCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E545666" ref_strand="+" ref_description="SGN-E545666 [TUS-68-K4]">
      <seq>ttttttttttgatctttagtaatacacacaatgttgaacttattcatctatgcacattgtacaagagacgtacagattatttgcgaaaggtaattgtacaggatagatcatctaaatacacaagagtcggagatattatgaccgagcaggtactctatagatatcggtcttcctggctttatctttttttcatctgtcttctgttttgtgctcaaatattagtactaccattgcaacagagcaagctgataaccgtcacatcggacacaaacattcttcaagcaatgcagctcatgagtggtaagtattagttctaactcgcgaagttactgatgcttaatgcactatggaaatgtgatggaacgttttatgatcacagagcaccacatacgacatgttccagtgatcgatgggaaggtagtaggcatgatttctgtggcggatattgtcaaagcagtggtggatcaacaaactggagaagtgaagcaactcaatcaattcatcaaaggagattactactgaaaaacaatattagcaaagccacaacaatactcattgttaactttcaaattgtcaaacaagatctaaaaacagtgttcaattttaaccaaaattatatttcgctgtaaatctaacttagcttatgcccatacacgacatttaaaattatataaaattaaataaataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="23454" stop="24742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23753" g_stop="24442" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E545666" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23753" e_stop="24442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTAATTGATCTTTAGTAATACACACAATGTTGAACTTATTCATCTATGCACATTGTACAAGAGACGTACAGATTATTTGCGAAAGGTAATTGTACAGGATAGATCATCTAAATACACAAGAGTCGGAGATATTATGACCGAGCAGGTACTCTATAGATATCGGTCTTCCTGGCTTTATCTTTTTTTCATCTGTCTTCTGTTTTGTGCTCAAATATTAGTACTACCATTGCAACAGAGCAAGCTGATAACCGTCACATCGGACACAAACATTCTTCAAGCAATGCAGCTCATGAGTGGTAAGTATTAGTTCTAACTCGCGAAGTTACTGATGCTTAATGCACTATGGAAATGTGATGGAACGTTTTATGATCACAGAGCACCACATACGACATGTTCCAGTGATCGATGGGAAGGTAGTAGGCATGATTTCTGTGGCGGATATTGTCAAAGCAGTGGTGGATCAACAAACTGGAGAAGTGAAGCAACTCAATCAATTCATCAAAGGAGATTACTACTGAAAAACAATATTAGCAAAGCCACAACAATACTCATTGTTAACTTTCAAATTGTCAAACAAGATCTAAAAACAGTGTTCAATTTTAACCAAAATTATATTTCGCTGTAAATCTAACTTAGCTTATGCCCATACACGACATTTAAAATTATATAAAATTAAATAAATAAAT</genome_strand>
        <mrna_strand>TTTTTTTTTTGATCTTTAGTAATACACACAATGTTGAACTTATTCATCTATGCACATTGTACAAGAGACGTACAGATTATTTGCGAAAGGTAATTGTACAGGATAGATCATCTAAATACACAAGAGTCGGAGATATTATGACCGAGCAGGTACTCTATAGATATCGGTCTTCCTGGCTTTATCTTTTTTTCATCTGTCTTCTGTTTTGTGCTCAAATATTAGTACTACCATTGCAACAGAGCAAGCTGATAACCGTCACATCGGACACAAACATTCTTCAAGCAATGCAGCTCATGAGTGGTAAGTATTAGTTCTAACTCGCGAAGTTACTGATGCTTAATGCACTATGGAAATGTGATGGAACGTTTTATGATCACAGAGCACCACATACGACATGTTCCAGTGATCGATGGGAAGGTAGTAGGCATGATTTCTGTGGCGGATATTGTCAAAGCAGTGGTGGATCAACAAACTGGAGAAGTGAAGCAACTCAATCAATTCATCAAAGGAGATTACTACTGAAAAACAATATTAGCAAAGCCACAACAATACTCATTGTTAACTTTCAAATTGTCAAACAAGATCTAAAAACAGTGTTCAATTTTAACCAAAATTATATTTCGCTGTAAATCTAACTTAGCTTATGCCCATACACGACATTTAAAATTATATAAAATTAAATAAATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E310522" ref_strand="+" ref_description="SGN-E310522 [cLEZ-19-G13]">
      <seq>ttggctaatatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaatcaatgattcacacgatattaactcaattttttaaggggagagttcatcaaggtagcttgctacttgggctctcgtgtgtcgcctatgcgttgcactactgcatgggcctggcacaccccaccaaatctacttcaaatcttttggttgatatattgtgtaatgtaatctaattcaaatctttcggttgatatattgtgtaatgtgttcttattatgtttatacatacttatatttatttatttaattttatataattttaaatgtcgtgtatgggcataagctaagttagatttacagcgaaatataattttggttaaaattgaacactgtttttagatcttgtttgacaatttgaaagttaacaatgagtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="25029" stop="24000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24729" g_stop="24300" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E310522" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24729" e_stop="24300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAATCAATGATTCACACGATATTAACTCAATTTTTTAAGGGGAGAGTTCATCAAGGTAGCTTGCTACTTGGGCTCTCGTGTGTCGCCTATGCGTTGCACTACTGCATGGGCCTGGCACACCCCACCAAATCTACTTCAAATCTTTTGGTTGATATATTGTGTAATGTAATCTAATTCAAATCTTTCGGTTGATATATTGTGTAATGTGTTCTTATTATGTTTATACATACTTATATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATT</genome_strand>
        <mrna_strand>TTGGCTAATATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAATCAATGATTCACACGATATTAACTCAATTTTTTAAGGGGAGAGTTCATCAAGGTAGCTTGCTACTTGGGCTCTCGTGTGTCGCCTATGCGTTGCACTACTGCATGGGCCTGGCACACCCCACCAAATCTACTTCAAATCTTTTGGTTGATATATTGTGTAATGTAATCTAATTCAAATCTTTCGGTTGATATATTGTGTAATGTGTTCTTATTATGTTTATACATACTTATATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E280203" ref_strand="+" ref_description="SGN-E280203 [cLEL-7-F23]">
      <seq>cccatcctcctttcattacttcaatttcacacccacccacataacattagacatagggttagggtttctttttttttttttttaaattaacaaaaaaaaaaaaatcatggcattaggtggtggtaatgaggaaaaagagatgagaatttcaggttttcaaaatatagatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="36241" stop="37013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36541" g_stop="36713" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E280203" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>173</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36541" e_stop="36713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATCCTCCTTTCATTTCTTCAATTTCACACCCCCCCACATAACATTAGACATAGGGTTAGGGTTTCTTTTTTTTTTTTTTTAAATTAACAAAAAAAAAAAAATCATGGCATTAGGTGGTGGTAATGAGGAAAAAGAGATGAGAATTTCAGGTTTTCAAAATATAGATCTTG</genome_strand>
        <mrna_strand>CCCATCCTCCTTTCATTACTTCAATTTCACACCCACCCACATAACATTAGACATAGGGTTAGGGTTTCTTTTTTTTTTTTTTTAAATTAACAAAAAAAAAAAAATCATGGCATTAGGTGGTGGTAATGAGGAAAAAGAGATGAGAATTTCAGGTTTTCAAAATATAGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E226155" ref_strand="-" ref_description="SGN-E226155 [cLEL-31-K16]">
      <seq>atgctgaagtacaaagattttgctcacaagttggagtcaagagacaggtttttaaggtttggatgcataataataagaacccttcttctgctaaaaaaaatataatacaagaagatcaaccttaattaattttgtttaattaaggttttgagggaaaaaatgaaattaaatttcttgggatttggtttatgcttatgtaatcttactaggaatcgtacgtagctagttttttttgttttttttttgggggggtctatgtagtattattgtaactatatggaaccacttaattagatttttatttttattaattgttgtactttggaacctttattcatctgaaaattttcagctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="37873" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38173" g_stop="38526" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="381"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E226155" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226155" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38173" e_stop="38526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</genome_strand>
        <mrna_strand>ATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E226059" ref_strand="-" ref_description="SGN-E226059 [cLEL-31-K16]">
      <seq>aagaagatcaaccttaattaattttgtttaattaaggttttgagggaaaaaatgaaattaaatttcttgggatttggtttatgcttatgtaatcttactaggaatcgtacgtagctagttttttttgttttttttttgggggggtctatgtagtattattgtaactatatggaaccacttaattagatttttatttttattaattgttgtactttggaacctttattcatctgaaaattttcagctaaaaaaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="37981" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38281" g_stop="38526" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="256" polyA_stop="273"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E226059" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226059" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38281" e_stop="38526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</genome_strand>
        <mrna_strand>AAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E392956" ref_strand="+" ref_description="SGN-E392956 [TUS-37-C15]">
      <seq>tttcaggggcaacgtgtgtgttgacatccccgagtacatttgtcaatcgtcctaggatttggcttgaattgatatcagagttcaaggcaacttgcactcctgttccttcatttgctttgcctctcgtgttgaaacgtggtcatactgaggcaacggttacaggaactgttagcaatcctattagtatgttgagcttgatgaatttgatcatcgttaacgagccaatttacaatgattctatcgaagaatttgttgaagtttttaggccttttgggctaaatcctttggcaatttctccttcatatggcttagctgagaatggcacatttgtttcaacatcatggagaagtagtaagtttaacaaattttcgacgtataaaaagctcttgccaagtgctaggcttgatgaagaccaagtagacattgaaattcttgttgtgaatgaagatacaaatgagattgttgaagatggaattgaaggtgaaatatggatttcatctcctagcaatgctattggatatttagcacatccctctctaactcaacaagtgttcaacgccacgcttaanaacaaggcgggaaaatgctatgttcaaacaggggataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="41731" stop="40524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41431" g_stop="40824" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E392956" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41431" e_stop="40824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACATCCCTCTCTAACTCAACAAGTGTTCAACGCCACGCTTAAAAACAAGGCGGGAAAATGCTATGTTCGAACAGGGGATAGA</genome_strand>
        <mrna_strand>TTTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACATCCCTCTCTAACTCAACAAGTGTTCAACGCCACGCTTAANAACAAGGCGGGAAAATGCTATGTTCAAACAGGGGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E242735" ref_strand="+" ref_description="SGN-E242735 [cLED-31-A22]">
      <seq>ttcaggggcaacgtgtgtgttgacatccccgagtacatttgtcaatcgtcctaggatttggcttgaattgatatcagagttcaaggcaacttgcactcctgttccttcatttgctttgcctctcgtgttgaaacgtggtcatactgaggcaacggttacaggaactgttagcaatcctattagtatgttgagcttgatgaatttgatcatcgttaacgagccaatttacaatgattctatcgaagaatttgttgaagtttttaggccttttgggctaaatcctttggcaatttctccttcatatggcttagctgagaatggcacatttgtttcaacatcatggagaagtagtaagtttaacaaattttcgacgtataaaaagctcttgccaagtgctaggcttgatgaagaccaagtagacattgaaattcttgttgtgaatgaagatacaaatgagattgttgaagatggaattgaaggtgaaatatggatttcatctcctagcaatgctattggatatttagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="41730" stop="40603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41430" g_stop="40903" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E242735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41430" e_stop="40903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACA</genome_strand>
        <mrna_strand>TTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E242712" ref_strand="+" ref_description="SGN-E242712 [cLED-31-E11]">
      <seq>ttcaggggcaacgtgtgtgttgacatccccgagtacatttgtcaatcgtcctaggatttggcttgaattgatatcagagttcaaggcaacttgcactcctgttccttcatttgctttgcctctcgtgttgaaacgtggtcatactgaggcaacggttacaggaactgttagcaatcctattagtatgttgagcttgatgaatttgatcatcgttaacgagccaatttacaatgattctatcgaagaatttgttgaagtttttaggccttttgggctaaatcctttggcaatttctccttcatatggcttagctgagaatggcacatttgtttcaacatcatggagaagtagtaagtttaacaaattttcgacgtataaaaagctcttgccaagtgctaggcttgatgaagaccaagtagacattgaaattcttgttgtgaatgaagatacaaatgagattgttgaagatggaattgaaagtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="41730" stop="40646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41430" g_stop="40946" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E242712" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41430" e_stop="40946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAA</genome_strand>
        <mrna_strand>TTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAAGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E349426" ref_strand="+" ref_description="SGN-E349426 [cTOS-1-P5]">
      <seq>ttctaatgttagtttacagcagcagatattgtcaatgcagcagcagcaacaacaacaacatcagcagttcttggatcctattaatgggattcttaatgttgggagctaagtgatttaagggtctaaggatgcgaacaaccaagctaaataatttaaggggctaaggatgcaaaccaagcttaagtatgaatctggtggaatttaagagcttgctaattggaaaagagcgggtccaatgaagacacactaagttatgcctttcatattctcaacatgtactgcacacgtttattccatctacgtttatattaaaattttgtgtatacacattcttgaaataaaggttgaaaaatgaaacataaaagtattgaagtgaaaatctttcttatttggttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="45808" stop="43478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45508" g_stop="45407" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45406" i_stop="44073" i_length="1334">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44072" g_stop="43779" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="396" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="406"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E349426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45508" e_stop="45407"/>
          <exon e_start="44072" e_stop="43779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAATGTTAGTTTACAGCAGCAGATATTGTCAATGCAGCAGCAGCAACAACAACAACATCAGCAGTTCTTGGATCCTATTAATGGGATTCTTAATGTTGGGTATGTTTCTCTTTCGTGTCTAGTTTACCATTAATCGTTCAGTAATTGTCATGTATCTTTCCAGAGTTTTTCCATGTATGTTCATTGCATTTTCAATAGTATGTAATGATGGTTATCGGTAGGGGAAAGTTAGTCGATTACTCTCAGGTAAAACATGTCATGCAATAGTTTAGTTACAGAGTGGTTCGGTTAACCTCAATGTAGTAATACTTCGTTAGTGAAAAGCCTGAAAATGAAAAGAAAAGAAAAAAGTAAGGAAAGCAGTTGCTCTTCATCTAAATATCCTGAATATGATTGTCCTATCTTCAAAAACTCTTGAGTTTGTCTTTTTCCAAACTGTCCGCCATTTGCAAGCAGGAACCAATCTCCACGCTTTCTTGTCTAACTCTACCTCCCAAACTGTTCTAGCTCTTAGGAAGATCCACAGTGCTTGCAGGAACCACTCTCGATTATTTGATCCCCACCAAATTAAGAAAGAGCTGTCACAATTGATAAGTAAAAGAACAATGAAGAAACAAATGGCTATTAGTTTCTGTGTTAGACTCAGAGAACAAACATATGGAACATAACTGGAATCCTCTTCTTCTCAACCTTTCTTGAGTCAAAGCTGCCTTTCTAGATACCAACCAGGTGAAAAACAGAACCTTTGGACTTTGGAGGGGCATTATAAAATTATATGGCCAATCAATATTCTGATAAGCTTAATTTGTGATTGCTAAATTGGCAAACATGACTGTGAAAGTCCCATCTTTGCTTGGATTCCAATAGAATTTGTCCGCTGCTTCTGATAGCCCCTAAAGCTCCTCCAAAGTTTTAAAGAACTCTACTGCTCCTTTAATGATATCTGATGGATCTTCACATCCCTACTCCATCAGGACTGTTAACAGGATCTGTGTACCAAATCCCTTCCTGACTATTTGTCAAGAATTACCCTTCTCCATTAACTGTCCTCTTCCTTAGTTTACCTCCATATCCATTTCATCCGTCGACATGTATTTTGAACATTTATGTCCTTAATTACCAGACCCCTTTTTCAATTTCAAAACTTCCTCCAAACTAGTTCAGGGCTGAGCTTTGTCAAACCTTTTCTGGTTTAAGGTGCTAGTTTGTAATATTATATTACCATGTCAACCAAAAAAGAAAAAGAGGTGCTACTTACTCTAATCCCTTTGAGCTAAATAACTTTGCCATGACTTTCAGTGACTCCAATATCATGCCTATAATTATGGAAGTATTAACTATGTTCTTAATTCTAATGAGCAAGTAAGCATTTCTTTTCCCAATGAAGTTGTAATGCAAAAGTAAACACCATTGATTGAATTTCCCATATTCAGGAGCTAAGTGATTTAAGGGTCTAAGGATGCGAACAACCAAGCTAAATAATTTAAGGGGCTAAGGATGCAAACCAAGCTTAAGTATGAATCTGGTGGAATTTAAGAGCTTGCTAATTGGAAAAGAGCGGGTCCAATGAAGACACACTAAGTTATGCCTTTCATATTCTCAACATGTACTGCACACGTTTATTCCATCTACGTTTATATTAAAATTTTGTGTATACACATTCTTGAAATAAAGGTTGAAAAATGAAACATAAAAGTATTGAAGTGAAAATCTTTCTTATTTGGTTC</genome_strand>
        <mrna_strand>TTCTAATGTTAGTTTACAGCAGCAGATATTGTCAATGCAGCAGCAGCAACAACAACAACATCAGCAGTTCTTGGATCCTATTAATGGGATTCTTAATGTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAAGTGATTTAAGGGTCTAAGGATGCGAACAACCAAGCTAAATAATTTAAGGGGCTAAGGATGCAAACCAAGCTTAAGTATGAATCTGGTGGAATTTAAGAGCTTGCTAATTGGAAAAGAGCGGGTCCAATGAAGACACACTAAGTTATGCCTTTCATATTCTCAACATGTACTGCACACGTTTATTCCATCTACGTTTATATTAAAATTTTGTGTATACACATTCTTGAAATAAAGGTTGAAAAATGAAACATAAAAGTATTGAAGTGAAAATCTTTCTTATTTGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E745429" ref_strand="+" ref_description="SGN-E745429 [GI|47105649]">
      <seq>ggctaattccagtattttcaacaacttcatttttcttgatctgtagttcaaatttcaagaactatagagaaaaggggttgactcaaaatttgaagaaaaaaaaatgagtttcagagaagagaacaatgaaggggatctgaaaaagccatttttacatactgggagttggtatcgtatggggtcaagacagtctagtatgatgggttcttctcaagctattcgtgatagttctatttctgttcttgcttgtgttctcatagttgctttgggcccaatccagtttggtttcacttgtggctacacttcaccaacgcaaattgcaattaccaaagatctgaagctcactgtttctgagttctctttgttcggttctttatccaatgtgggtgctatggttggtgcaatatctagtggtcaaatttctgagtacattgggcgaaaagggtctttaatgatagctgctataccaaatatcattggttggcttgccatctcatttgccaaagatccttcttttctatacatgggaagattgttggagggctttggtgtgggaataatctcttatgtggttcctgtatatattgctgagattgcacctcagaatatgagagggggtctagggtctgttaaccagctctctgttacaattgggatcatgttgtcctatttactgggactttttgttaattggaggctgcttgctgttcttggagcattaccttgcctagcactgatacctggactatttttcatccccgaatctcctcggtggttggccaaaatgggtttaacagaagattttgaaacttcgttgcaagttcttcgaggctttgaggctgatattaccaatgaagtaaatgaaattaagaggtctgtagcatcatcaacaaaccgaagaacagcaatgcgttttgcggatctcaaacatagaagatattggtttcctctcatggtaggaattggactacttatcctgcaacagttaggaggaatcaacggtgttatattctattccagcaacattttcctatctgccggtatttcgtcaagtaatgctgcaacttttggtgtcggtgctatacaggttgttgcaactgcagtttctacatggctggtggacagaactggacgtagaattttattaattgtttcctcggctggaatggctgttagtcttcttattgtctccgttgccttctatctaaagggttatgtatctgaggattctaccctctatggtgtcttgggaatagtgtccgtagttggggtggtgttcatgattatttcattctcgctcggaatgggaccaattccatggcttataatgtctgagattcttccaatcaagatcaaaggtctcgctggaagtacggcaacattagccaactggttattctcgtgggtaataacagtgactgcaccgttgcttatggcttggagcagtggaggaaccttcactatttacatggttatgtgtgctttcaccgtggcgttcgtggcaatttgggtaccggagacgaaagggagaactctagaggaaattcagttttctttcagatgaaaacttaccccctcccaaacaggcctttgtgatcctttgttctttttgtcacaaaactcaatttcccttgtgcaaaagtttcaatttttcacatatatagggaagaatgagttgcacatgctgcttcagagtgtgtacatttcatcttgatcttgccatttgctgtaatttactgtatgattttattatttttgtatattctaagtgtgattataccattcaatttaaaataaagtgctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="53183" stop="59599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53482" g_stop="53773" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53774" i_stop="54760" i_length="987">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54761" g_stop="54823" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="355" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54824" i_stop="54902" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54903" g_stop="54992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="445" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54993" i_stop="55093" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55094" g_stop="55153" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="505" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55154" i_stop="55256" i_length="103">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55257" g_stop="55322" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="571" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55323" i_stop="55422" i_length="100">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55423" g_stop="55488" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="637" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55489" i_stop="55580" i_length="92">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55581" g_stop="55656" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="713" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55657" i_stop="56329" i_length="673">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="56330" g_stop="56394" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="778" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="56395" i_stop="56483" i_length="89">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="56484" g_stop="56576" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="871" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="56577" i_stop="56684" i_length="108">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="56685" g_stop="56768" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="872" r_stop="955" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="56769" i_stop="56854" i_length="86">
            <donor d_prob="0.025" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="56855" g_stop="56939" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1040" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="56940" i_stop="57531" i_length="592">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="57532" g_stop="57578" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1041" r_stop="1087" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="57579" i_stop="57728" i_length="150">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="57729" g_stop="57791" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1088" r_stop="1150" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="57792" i_stop="57872" i_length="81">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="57873" g_stop="57932" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1151" r_stop="1210" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="57933" i_stop="58027" i_length="95">
            <donor d_prob="0.512" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="58028" g_stop="58093" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1211" r_stop="1276" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="58094" i_stop="58187" i_length="94">
            <donor d_prob="0.759" d_score="1.00"/>
            <acceptor a_prob="0.506" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="58188" g_stop="58247" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1277" r_stop="1336" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="58248" i_stop="58542" i_length="295">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="58543" g_stop="58657" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1337" r_stop="1451" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="58658" i_stop="58936" i_length="279">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="58937" g_stop="59290" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1452" r_stop="1805" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1806" polyA_stop="1825"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E745429" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1805</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53482" e_stop="53773"/>
          <exon e_start="54761" e_stop="54823"/>
          <exon e_start="54903" e_stop="54992"/>
          <exon e_start="55094" e_stop="55153"/>
          <exon e_start="55257" e_stop="55322"/>
          <exon e_start="55423" e_stop="55488"/>
          <exon e_start="55581" e_stop="55656"/>
          <exon e_start="56330" e_stop="56394"/>
          <exon e_start="56484" e_stop="56576"/>
          <exon e_start="56685" e_stop="56768"/>
          <exon e_start="56855" e_stop="56939"/>
          <exon e_start="57532" e_stop="57578"/>
          <exon e_start="57729" e_stop="57791"/>
          <exon e_start="57873" e_stop="57932"/>
          <exon e_start="58028" e_stop="58093"/>
          <exon e_start="58188" e_stop="58247"/>
          <exon e_start="58543" e_stop="58657"/>
          <exon e_start="58937" e_stop="59290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAATTCCAGTATTTTCAACAACTTCATTTTTCTTGATCTGTAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTTGAAGAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGGAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCACTGTAATTTCTCATTTCTCATTCAACTTCTTTACTTTGCTTTGTTTTTATGTATATGTATGTTTATCTGCACAATATCATGTTAGAATGTTCAAGTTTGATGAGAAAAGAGAGTTTTTTGGGATAAAAATGGAGTCTTTAGCTTGTTTTGTTGTGGTAAAGGATTCATAATTGGGGTTGATGAGGTGATAACCAATTCAATATTGATCACATGTCTGTTTATTTGCACAATATCATGTTAGAATGTTCAAGTTTGATGAGAAAAGATAAAGTTTTTTGAAAAAAAATGAAGTCTTAAGCCTCCTTTGATATGATGAATGATTCATAATTGGGGTTGATGAGGTGGTAAACAATTCAATATTGACCATATGTATGTTTACCTGCCTATTATCCTGTTAGAAGCTTCAAGTTTGATGAGAAAAGATAGTTTTTTGGAATAAAAATGAAGTCTTTAGTCTCTTTTGTTGTTGTAAAGGATTCACAGTTGGGGTAAGAGGTTGCATATATTGTTGGGATTTACAATATGTTATGCCATTCAGATTTTTCTGGTGGATGACGTAACAATTCAATATTGACTACATGTTTGTTTACCTTTCCAATAACCTATGAGAAATTTCAAGAGTTGATTTCTCATATGGTCAATCAATAGAAAGTCATTTGTTTTATTGAAAAAAATTGTGAATCAAGAAGAGAAGGACTTATTGAGATTATAACTATTGTTGAGTGACCATATGAGAATTTACATGAAACTTCATATTTGATTGAAGAGGATAAGTTTGAATAAAAATAGGCTTAAGCTTCTTCATTTTTGTGGTTAAGGGATCAAAAGTGGTATTAAAAAAATGTAGCATCTTTATTCAGATTACAGTTTGTCATGTCATTCTTATTGTGCCTGCAGTTTATTGGCTGCTTACACGATTTATGTTGCTGCAACAAATATTTGCATATATATCTCTATTGATCAGGTGTTTGTTTTTGTTGCATTTGAAGTGTGGCTACACTTCACCAACGCAAATTGCAATTACCAAAGATCTGAAGCTCACTGTTTCTGAGGTCTGCAAGAGTCATTCTTGATTTATATCTAATTTAAGTTTGTTTCAGAGCCATTGTTGACTAAAGATAATCTTTTCAGTTCTCTTTGTTCGGTTCTTTATCCAATGTGGGTGCTATGGTTGGTGCAATATCTAGTGGTCAAATTTCTGAGTACATTGGGCGAAAAGGGGTAAGATTATTGCATTAAAAATGATGTCTAGTTTTTTCATTTACCATATTTCTGTGTATTGCTGAAGTGGATGCTCAAATCCTTTTTTTTTCCTACTGCAGTCTTTAATGATAGCTGCTATACCAAATATCATTGGTTGGCTTGCCATCTCATTTGCCAAAGTAAGATATTCTACCTGAAGTATATTATATGGTGCCTCGATAATCTACATTGACATGTATGTGCTTATATCTCCCTTCCTTTGGCCTTACCAATATGTTTCAGGATCCTTCTTTTCTATACATGGGAAGATTGTTGGAGGGCTTTGGTGTGGGAATAATCTCTTATGTGGTAATGTTCAATTTCTTAAATCTTCTCTGGTTACAGTGATTGACTACACCGAAATTCTCAAAACTAAATGCTTTCGCTTCCTGCTTTTTGGTGTTTTTAGGTTCCTGTATATATTGCTGAGATTGCACCTCAGAATATGAGAGGGGGTCTAGGGTCTGTTAACCAGGTTCGCGGAGTTATAGACTTATTTTTCGTTAAAACCAAAGTTTGCTATGCCTGCTTAATCAATCACATGCTATCATTTGTTTCTTAATGTAGCTCTCTGTTACAATTGGGATCATGTTGTCCTATTTACTGGGACTTTTTGTTAATTGGAGGCTGCTTGCTGTTCTTGGTAATGATCATTTCTCTTGAAAACTCTTGTTAAGCTACAATTTACAGTTATGAAGTCATAAATCATTTTTTACTCTACTGAATAACATTTAGTGCATAAATAATAAACTAGTCAATTAAGTTGAAGTGATAGCTTTTCATTTTGTGAGGACTGAGAATAGTTATTGAGTTCTTCTTTGGCTGATATCTGCACAGCTTCTCTTTATTCTTGTAGATTTACGTTGTCAAGCGTAAGCGCTTTCCTGCTCCCTGACTTAAGACTTGTGTTTTGTTAGTTGAGCAGTATTTCTGTTTTAAAATGACATTCCTTTTCTTCTTAATGACGGTGTTGGTGGGGGCAGTTTGGGTACCTACTGCCTCCCACCAACACATGTAACGTATAACTTTTCCAACCAAGGCTTAGGAGATGGGACGTAACGACATCGAGTTTCTTTTGCCTCTGTTGGGATTGAACCTGAGACCTCATGGTTCTTCTCCTACTTCATTGACCACTAGTCCACATCACTGTGCTTCCAAAATGACAGTCTTCATTCGCATAATTTTATAAAAAAAATATTTTTCCTTTTGTGCTTTTGGTGGAGAGGGCTATGTGTCTTCTTCTTCTTCTTCTTACACTTACATAAGAGTTTCCGGATTGAATTTTGAAAGAGCTGGTATATTATTTTCTTTTATAGGAGCATTACCTTGCCTAGCACTGATACCTGGACTATTTTTCATCCCCGAATCTCCTCGGTGGTTGGTGAGCTTCATTATATATATATTTCTTTGTGTAATTCTTCAAGGCTTTGATTGCTGTTTGTCTCAGTTGAGTTTCTATCATAAATATAGGCCAAAATGGGTTTAACAGAAGATTTTGAAACTTCGTTGCAAGTTCTTCGAGGCTTTGAGGCTGATATTACCAATGAAGTAAATGAAATTAAGGTAAATTGTATGAAAGACTATATAAAGCAAGCCTTGTTGCCACACATGAAATTCGGTATAAAACTTGTTGTTAAATTTGTATTTATTTTATGTTATTTTTGCGTATAGAGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTTGCGGATCTCAAACATAGAAGATATTGGTTTCCTCTCATGGTATTTTGACGTTTCATGCTGTTATTGGAGCCTTCGTGTTAGTTATGCCCTTGTTTCGTCAATCTTCTAATTTTTCATTCTTTTAGGTAGGAATTGGACTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCGGTACGGATTAAACAAACAGTTGCAACTTGTCATCTTAAATGATGGATGTGTCAGTAGCATTTGCCTTCTTCAAAAGAAGTGTCATTTTCAGCCTGTCATGTAGCATCTACCTTTTTGTTATGATCCATTGCTGGCAAAATTGAATTGCATTATAATTTTGCCTCAAGAGAACCCCTGAAACAAACTAATTGATTAAGATTGATACACGAGTTATTTAAATGGCATAATACATAAACAAACACTCAAATATGGCCCCAACTGGCAAGTACGCACTCCAACTTTGAGAGTATACATCTAGACACCTCACCTGGCATCTAAACACTCCAACTTGTCCTCATTGTCTGGTGGACACCTGACACTAATGTCGCACATAAAGTTAGAAGTGTCTAGATTGTACGTTTGAGTTCAACTGACATGGCGGAGACGAGTTGAGATGTCTAGATGTGGATACTCAAAGTTGGAGTGTTTAGTTGTTAGTTTAGACCAAGTTAAAGTGTCTATCTATGTATTATGTCTATTTAAATCTATAATGATCTATGACTTTCTTCGTGTAATATAAGTCTTCACTAATTTAGTCATCTAAACTTCACAGGTATTTCGTCAAGTAATGCTGCAACTTTTGGTGTCGGTGCTATACAGGTCCAGCTTTTGCTATTTTAGTTTCTCTTCTTTAACTTTCAAGTATGCATATTATTTAGGATGGAAGGTGAAAAGGTTTCGATTTCTGTGTAGCACTTGCTTGCATTACTTTTGTGCTGTCAAATTTCATCAATGTCCTTCAATGTGCAGGTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGACAGAACTGGACGTAGAATTTTATTAATTGTAAGTTTTAAAAAGTCATGACGTATATGTAGATTGTTCTAATTTTTGTGCTAACTTATTAAAGCAAATGCTCTTTTGTAGGTTTCCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAGGTAGTTTAGTGGAACAAGTTGCTTTCGTACGAAAGATTCCGACTTGAACTGCACTTGTCATCTTTCTCATCATTTCTTCTTTTATATTTGATCAGGGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTGGTATGTACCCTTCTCGATGAAGACATCTTCGTCTCTTGAAAATACATGATTAAAGTAACAGATACTCATTTTTCTGACCAACTTCTCATTTCAGTTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAGGTACTTACTTTTTCATTTATCATGCATGCCAAATTTCTGCTTGCTGTTGAGTTCTCTTCGTACCTACTTTTAACAATTTCCGAGCAATTGGAGTTGGTCCAATTATCGGATACTGTTCGACCTTTAATCGGTTCGGTGATTGATTAGTGTCCAAGATCCCTTTCGTGAATATAGACATGCTACATGTTTCATTTATCTGGAACGATACGGGCAACTGATGATTAAGTTTTCGTGCTTGCTTTACGTTTCATGTTAAGATTTTCTTTGAACTTATTACGTGCATTGGATATTGTAGATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAGGTATCTTTCTCTCATACTTACACACCACATGTATAGACATTTTGTTCCCCATAGCATAAGATTCCCGCACTATGTGCATCAGTGGCGTAACCAGAATTTCCACTGAGAGTCAAAATATAAAGAAGTAAAACACGAAAAAGCCAAGGGGCTTCGTCTATTGACACCCCTCAGACAAAAAGATGTACAAACCATAAACATGTTCTGCTGAAAAGTTTCGACATTTCAAACGTGTAGCTTCTAAGACCTGAACTGACTTAACATCTGCACATTTTTCACCAGGAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCGAA</genome_strand>
        <mrna_strand>GGCTAATTCCAGTATTTTCAACAACTTCATTTTTCTTGATCTGTAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTTGAAGAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGGAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTACACTTCACCAACGCAAATTGCAATTACCAAAGATCTGAAGCTCACTGTTTCTGAG...............................................................................TTCTCTTTGTTCGGTTCTTTATCCAATGTGGGTGCTATGGTTGGTGCAATATCTAGTGGTCAAATTTCTGAGTACATTGGGCGAAAAGGG.....................................................................................................TCTTTAATGATAGCTGCTATACCAAATATCATTGGTTGGCTTGCCATCTCATTTGCCAAA.......................................................................................................GATCCTTCTTTTCTATACATGGGAAGATTGTTGGAGGGCTTTGGTGTGGGAATAATCTCTTATGTG....................................................................................................GTTCCTGTATATATTGCTGAGATTGCACCTCAGAATATGAGAGGGGGTCTAGGGTCTGTTAACCAG............................................................................................CTCTCTGTTACAATTGGGATCATGTTGTCCTATTTACTGGGACTTTTTGTTAATTGGAGGCTGCTTGCTGTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATTACCTTGCCTAGCACTGATACCTGGACTATTTTTCATCCCCGAATCTCCTCGGTGGTTG.........................................................................................GCCAAAATGGGTTTAACAGAAGATTTTGAAACTTCGTTGCAAGTTCTTCGAGGCTTTGAGGCTGATATTACCAATGAAGTAAATGAAATTAAG............................................................................................................AGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTTGCGGATCTCAAACATAGAAGATATTGGTTTCCTCTCATG......................................................................................GTAGGAATTGGACTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCGTCAAGTAATGCTGCAACTTTTGGTGTCGGTGCTATACAG......................................................................................................................................................GTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGACAGAACTGGACGTAGAATTTTATTAATT.................................................................................GTTTCCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAG...............................................................................................GGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTG..............................................................................................TTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAG.......................................................................................................................................................................................................................................................................................................ATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAG.......................................................................................................................................................................................................................................................................................GAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E227180" ref_strand="-" ref_description="SGN-E227180 [cLEL-30-G23]">
      <seq>ggttattctcgtgggtaataacagtgactgcaccgttgcttatggcttggagcagtggaggaaccttcactatttacatggttatgtgtgctttcaccgtggcgttcgtggcaatttgggtaccggagacgaaagggagaactctagaggaaattcagttttctttcagatgaaaacttaccccctcccaaacaggcctttgtgatcctttgttctttttgtcacaaaactcagtttcccttgtgcaaaagtttcaatttttcacatatatagggaagaatgagttgcacatgctgcttcagagtgtgtacatttcatcttgatcttgccatttgctgtaatttactgtatgattttattatttttgtatattctaagtgtgattataccattccattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="58298" stop="59583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58598" g_stop="58657" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58658" i_stop="58936" i_length="279">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58937" g_stop="59292" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="416" r_length="356" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E227180" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227180" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58598" e_stop="58657"/>
          <exon e_start="58937" e_stop="59292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAGGTATCTTTCTCTCATACTTACACACCACATGTATAGACATTTTGTTCCCCATAGCATAAGATTCCCGCACTATGTGCATCAGTGGCGTAACCAGAATTTCCACTGAGAGTCAAAATATAAAGAAGTAAAACACGAAAAAGCCAAGGGGCTTCGTCTATTGACACCCCTCAGACAAAAAGATGTACAAACCATAAACATGTTCTGCTGAAAAGTTTCGACATTTCAAACGTGTAGCTTCTAAGACCTGAACTGACTTAACATCTGCACATTTTTCACCAGGAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCGAAAT</genome_strand>
        <mrna_strand>GGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAG.......................................................................................................................................................................................................................................................................................GAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAGTTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCCATTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E303639" ref_strand="+" ref_description="SGN-E303639 [cLEY-6-C13]">
      <seq>gagctgctttcgggtacgtcatggcacctcttctcttgaagccgagtgatgctctacttctgttcacgagtcaagtatcattttgtccttttcttagtttagagccttatgctaatttgtgttgtaccatttcaatctattacttgtatgacttcatatatgtagcaattcctattttattgtagttattttcctgataaacatctattcatgactgagcttatgagtagtggattcaagttgctaacacgcactgttatttctcactgttagtgaaatgattccattaatggcatgttcatcattttctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="61929" stop="61020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61630" g_stop="61312" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E303639" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61630" e_stop="61312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAACATCTATTCATGACTGAGCTTATGAGTAGTGGATTCAAGTTGCTAACACGCACTGTTATTTCTCACTGTTAGTGAAATGATTCCATTAATGGCATGTTCATCATTTTCTATTTGCTTA</genome_strand>
        <mrna_strand>GAGCTGCTTTCGGGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAACATCTATTCATGACTGAGCTTATGAGTAGTGGATTCAAGTTGCTAACACGCACTGTTATTTCTCACTGTTAGTGAAATGATTCCATTAATGGCATGTTCATCATTTTCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E713192" ref_strand="+" ref_description="SGN-E713192 [FB06DH07]">
      <seq>ttcatgttgaggcatctcgaatgaccctgcaccgctttggaaatacttcatccagctctatctggtatgaattggcgtatatagaggccaaaggaagaatgaagaaaggtaacaaagtttggcagattgcatttggaagtggctttaaatgtaatagtgctgtttggcaggcactacgaaatgtaaagccttctcccgatggtccctgggaggattgtatcgacaggtatcctgtaaaagtagtgtcataacactgtggagatcatgattaggcaagttaagggctatctgtagctgcttccgtgtacgtcatggcgcctcttctcttgaagccgagtgatgctctacttctgttcacgagtcaagtatcattttgtccttttcttagtttagagccgcatgctaatttgtgttgtaccatttcaatctattacttgtatgacttcatatatgtagcaattcctattttattgtagttattttcctgataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="62221" stop="61128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61921" g_stop="61429" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="506"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E713192" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61921" e_stop="61429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAAC</genome_strand>
        <mrna_strand>TTCATGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCGCCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCGCATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E284940" ref_strand="+" ref_description="SGN-E284940 [cLER-19-L18]">
      <seq>atatagaggccaaaggaagaatgaagaaaggtaacaaagtttggcagattgcatttggaagtggctttaaatgtaatagtgctgtttggcaggcactacgaaatgtaaagccttctcccgatggtccctgggaggattgtatcgacaggtatcctgtaaaagtagtgtcataacactgtggagatcatgattaggcaagttaagggctatctgtagctgcttccgtgtacgtcatggcacctcttctcttgaagccgagtgatgctctacttctgttcacgagtcaagtatcattttgtccttttcttagtttagagccttatgctaatttgtgttgtaccatttcaatctattacttgtatgacttcatatatgtagcaattcctattttattgtagttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="62143" stop="61143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61843" g_stop="61444" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="401" polyA_stop="410"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E284940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61843" e_stop="61444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTT</genome_strand>
        <mrna_strand>ATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E210991" ref_strand="+" ref_description="SGN-E210991 [cLEC-69-J12]">
      <seq>acaagtccgtggatagaagaagggcgaaatataagcttgttcatgttgttaggacacatcgtggggctgatgataaggcatttcgttgtgtttaccaagaacaggatgatgctgggaaaactggggtttctttgtcaaaagatctcatggcaatcgctggtggagcgcttaagacgaatatcactacattgggtcctcttgttctacccatcagtgagcagcttctgttctttggttctctgataattaagaaaatattcaataagcatatcaagccttacattccagatttcaagttggcctttgatcatttctgcatacacgctggtggaagggctgttattgacgagctggaaaagaatttacagctgacacaggttcacgttgaggcatctcgaatgaccctgcaccgctttggaaatacttcatccagctctatctggtatgaattggcgtatatagaggccaaaggaagaatgaagaaaggtaacaaagtttggcagattgcatttggaagtggctttaaatgtaatagtgctgtttggcaggcactacgaaatgtaaagccttctcccgatggtccctgngaggattgtatcgacaggtatcctgtaaaagtagtgtcataacactgtggagatcatgattangcaagttaacggctatctgtagctgcttccgtgtacgtcatggcacctcttctcttgaagccgagtgatgctctacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="62599" stop="61271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62299" g_stop="61571" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E210991" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62299" e_stop="61571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCTGCATACACGCTGGTGGAAGGGCTGTTATTGACGAGCTGGAAAAGAATTTACAGCTGACACAGGTTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTC</genome_strand>
        <mrna_strand>ACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCTGCATACACGCTGGTGGAAGGGCTGTTATTGACGAGCTGGAAAAGAATTTACAGCTGACACAGGTTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGNGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTANGCAAGTTAACGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E321575" ref_strand="+" ref_description="SGN-E321575 [cTOB-25-O1]">
      <seq>gttgatcttgctaaggacatgttgcaagtgcacagaaatacctatgctgttgttgttagtactgagaatattacgcagaactggtattttgggaataagaagtccatgttgataccaaattgtttgtttagagtcggaggttctgctgttctgctgtctaacaagtccgtggatagaagaagggcgaaatataagcttgttcatgttgttaggacacatcgtggggctgatgataaggcatttcgttgtgtttaccaagaacaggatgatgctgggaaaactggggtttctttgtcaaaagatctcatggcaatcgctggtggagcgcttaagacgaatatcactacattgggtcctcttgttctacccatcagtgagcagcttctgttctttggttctctgataattaagaaaatattcaataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="62759" stop="61734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62459" g_stop="62034" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E321575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62459" e_stop="62034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAG</genome_strand>
        <mrna_strand>GTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E238102" ref_strand="+" ref_description="SGN-E238102 [cLED-22-I2]">
      <seq>aaaataggtgtgcttgttgtgaattgtagtttgttcaatccgactccatcgctttcagctatgattgtgaacaagtataagttgagaggtaatataaggagttttaatctgggaggtatgggttgtagtgctggtgtaattgccgttgatcttgctaaggacatgttgcaagtgcacagaaatacctatgctgttgttgttagtactgagaatattacgcagaactggtattttgggaataagaagtccatgttgataccaaattgtttgtttagagtcggaggttctgctgttctgctgtctaacaagtccgtggatagaagaagggcgaaatataagcttgttcatgttgttaggacacatcgaggggctgatgataaggcatttcgctgtgtttaccaagaacaggatgatgctgggaaaactggggtttctttgtcaaaagatctcatggcaatcgctggtggagcgcttaagacgaatatcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="62903" stop="61814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62603" g_stop="62114" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E238102" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62603" e_stop="62114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTA</genome_strand>
        <mrna_strand>AAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGAGGGGCTGATGATAAGGCATTTCGCTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E697483" ref_strand="+" ref_description="SGN-E697483 [FA03AD12]">
      <seq>cggtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctcctgagcatctcaaggctccctatgaacggttcatgcagcattcacggctcacaggtgattttgatgagtcgtcgcttgagtttcagaggaagattctggagcgttctggcctcggggacgaaacttatgttcctgaggctatgcatcagcttcctccgcagccttctatgcaggctgcgagggaagaagctgagcaagttatgtttggtgccttggataaattgtttgctaatacctctgtgaaacctaagaaaataggtgtgcttgttgtgaattgtagtttgttcaatccgactccatcgctttcagctatgattgtgaacaagtataagttgagaggtaatataaggagttttaatctgggaggtatgggttgtagtgctggtgtaattgccgttgatcttgctaaggacatgttgcaagtgcacagaaatacctatgctgttgttgttagtactgagaatattacgcacaactggtattttgggaataagaagtccatgttgatacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="63217" stop="62043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63133" g_stop="63131" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63130" i_stop="62915" i_length="216">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62914" g_stop="62343" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="575" r_length="572" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E697483" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63133" e_stop="63131"/>
          <exon e_start="62914" e_stop="62343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCA</genome_strand>
        <mrna_strand>CGG........................................................................................................................................................................................................................TTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCACAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E697949" ref_strand="+" ref_description="SGN-E697949 [FA04DB10]">
      <seq>gaggcatcttcagtggtagtatagtagagagaagaagaagaagagtgagagaggttttagagcctttcaaactctttgatttccccaatttattctctctctttttcaccgccgccatgaacggagccaccggcacgcaagtcaacaccgcggacggcggtggtggtgagccagtcggagttcagatccagcagagtaggaggttgccggatttccttcagagtgtaaacttaaagtacgttaaactaggttaccattacttgatctctcatttgttgactctatgtttgattcctgtaatggctgtgattttaattgaagcttcacaaatgaatcctgatgatattcgtcaattatggttacatttgcagtataatctagtttctgttattatttgttccgccgttttggtttttggatccacagtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctcctgagcatctcaaggctccctatgaacggttcatgcagcattcacggctcacaggtgattttgatgagtcgtcgcttgagtttcagaggaagattctggagcgttctggcctcggggacgaaacttatgttcctgaggctatgcatcagcttcctccgcagcccttctatgcaggctgcgagggaagaagctgagcaagttatgtttggtgccttggataaattgtttgctaatacctctgtgaaaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="63639" stop="62306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63340" g_stop="62606" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E697949" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63340" e_stop="62606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAGCTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAG-CCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTA</genome_strand>
        <mrna_strand>GAGGCATCTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGGACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGTTACATTTGCAGTATAATCTAGTTTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E329222" ref_strand="+" ref_description="SGN-E329222 [cTOD-2-M5]">
      <seq>aaaaagtcagcttcagtggtagtatagtagagagaagaagaagagtgagagaggttttagagcctttcaaactctttgatttccccaatttattctctctctttttcaccgccgccatgaacggagccaccggtacgcaagtcaacaccgcgaacggcggtggtggtgagccagtcggagttcagatccagcagagtaggaggttgccggatttccttcagagtgtaaacttaaagtacgttaaactaggttaccattacttgatctctcatttgttgactctatgtttgattcctgtaatggctgtgattttaattgaagcttcacaaatgaatcctgatgatattcgtcaattatggctacatttgcagtataatctagtctctgttattatttgttccgccgttttggtttttggatccacagtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctcctgagcatctcaaggctccctatgaacggttcatgcagcattcacggctcacaggtgattttgatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="63643" stop="62486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63343" g_stop="62786" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E329222" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63343" e_stop="62786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTCAGCTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGT</genome_strand>
        <mrna_strand>AAAAAGTCAGCTTCAGTGGTAGTATAGT--AGAG-AGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGTACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E697682" ref_strand="+" ref_description="SGN-E697682 [FA03DB12]">
      <seq>ggctgcaggaattcggcacgacgcttcagtggtagtatagtagagagaagaagaagaagagtgagagaggttttagagcctttcaaactctttgatttccccaatttattctctctctttttcaccgccgccatgaacggagccaccggcacgcaagtcaacaccgcggacggcggtggtggtgagccagtcggagttcagatccagcagagtaggaggttgccggatttccttcagagtgtaaacttaaagtacgttaaactaggttaccattacttgatctctcatttgttgactctatgtttgattcctgtaatggctgtgattttaattgaagcttcacaaatgaatcctgatgatattcgtcaattatggttacatttgcagtataatctactttctgttattatttgttccgccgttttggcttttggatccacagtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctcctgagcatctcaaggctccctatgaacggttcatgcagcattcacggctcacaggtgattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="63640" stop="62491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63333" g_stop="62791" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="566" r_length="543" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E697682" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63333" e_stop="62791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGA</genome_strand>
        <mrna_strand>CTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGGACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGTTACATTTGCAGTATAATCTACTTTCTGTTATTATTTGTTCCGCCGTTTTGGCTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E698633" ref_strand="+" ref_description="SGN-E698633 [FA07AD11]">
      <seq>gaggttttagagcctttcaaactctttgatttccccaatttattctctctctttttcaccgccgccatgaacggagccaccggcacgcaagtcaacaccgcggacggcggcggtggtgagccagtcggagtccagatccagcagagtaggaggttgccggatttccttcagagtgcaaacttaaagtacgttaaactaggttaccattacttgatctctcatttgttgactctatgtctgattcctgtaatggctgtgattttaattgaagcttcacaaatgaatcctgatgatattcgtcaattatggctacatttgcagtataatctagtttctgttattatttgttccgccgttttggtttttggatccacagtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctccctgagcatctcaaggctccctatgaacggttcatgcagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="63590" stop="62513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63290" g_stop="62813" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E698633" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63290" e_stop="62813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCT-CCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATT</genome_strand>
        <mrna_strand>GAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGGACGGCGGCGGTGGTGAGCCAGTCGGAGTCCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGCAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTCTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTTTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E547448" ref_strand="+" ref_description="SGN-E547448 [TUS-71-F9]">
      <seq>cccaccccaacccctatccccatacaccagtggttatcttcttccccatcattctaatgatttcaaaattcttagtatcagtggttatcttcttcccccaccattctaatggtttcaaaattcttagcattttgtttcatttataaatttttcgaagagattcttttccccatctttctctacctaaaaaacgagatgaagtaaaaagttataattaataaaagctgatgaaaaaaaaatttgtagggttaaagatagaactgtacagggagggggggtcgccattaatggagttaaagaaaatgtatgttttgttccagttgaaggcagggaggtgtttaggttttactttttttttaaattttttttactttaaaataatttttattttttttactttataatataatgtttaaataattttttggattaaaaaataacacatgtcattatttgattggtcaaattgacatgtcagcgcgagtgtatttcacacattctctattttttgtttattctcgaaaaaatgttcaaatgattcaaattcagaatggttgaagtgttcaataggtagtacgtctagttgaggtgtctaaatgaataatcgggacaagtttgagtgggcgcatatgactttgggctattttattctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="69521" stop="68267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69221" g_stop="68572" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E547448" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69221" e_stop="68572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCCAACCTCCATACCCATACACCATTGGTTATATTCTTCCCCCATCATTTTAATGATTTCAAAATTCTTAGTATCAATGGTTATCTTCTTCCCCCACCATTCTAATGATTTCAAAATTCTTAGCATTTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTATCTAAAAAACGAGATGAAGTAAAAAATTATAATTAATAAAAAAGCTGATGAAAAAAAAAATTTGTCGAGTTAAAGAT--AACTGTACAGGGAAGGGGGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGCAGGGAAGTGGGTGTTTAGGTTTTTCTCTCTCTTTTTTTCTTTTTTTTTTTACTTTAAAATAATTTTTATTT-TTTTACTTAATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCGATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTG</genome_strand>
        <mrna_strand>CCCACCCCAACCCCTATCCCCATACACCAGTGGTTATCTTCTT-CCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCA-TTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAAT--AAAAGCTGATG-AAAAAAAAATTTGTAGGGTTAAAGATAGAACTGTACAGGG-AGGGGGGGTCGCCATTAATGGAGTTAAAGAAAATGTATGTTTTGTTCCAGTTGAAGGCAGGG-A---GGTGTTTAGG-TTTT-ACT-T-TTTTTTT-AAATTTTTTTTACTTTAAAATAATTTTTATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGATTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGGCGCATATGACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E723246" ref_strand="+" ref_description="SGN-E723246 [FC19DF12]">
      <seq>gggcgattggcggccaatcggccgaattggtaagttgtaaaaaccgggtcagggcaattgacccatttcaaatagtaacatttccttgtgtaaaattctctccaatcggactgcggcgttaatccgttcactctccggcgaaaaatggaagccaatgctcctcagtttaagctaattttgggttcatcctctactgctcggaaaaagattttaggcgacatgggatacgagttcacaaccatgtctgcagatattgatgagaaagctatccggaaagaaaagcctgaagatttagttatggctcttgctgaggcaaaggcagaagccatcataccaagggtttcaattggagaatccgaaggggatgccgagccaacacttctaattacgtgtgatcaagtggtggtctatgaaggtgtgatcagggaaaaaccatccagtgaagcagaagcacgtcagttcatgaaagattacgccaatggacatgcagcaaccgtgagttctgttcttgtcacgaacctgacaacaggaagtagaagaggagagtgggacaaagtcgagatttatttccacgacataccagatcaagtcatagataaactgattgaggaagggatagttctttatgcagctggtggcttgataattgaacatcctctcgttttgccttatattaaggaagtggttggctcgactgatagcgtgatgggtctcccaaaagctctcaccgaaagacttataaaggaggttctttagtatgactatgatcctgctgctacctgaatgagttcgcgatctataattttgatatacgctattggagctgaaattatcattgattgttggcactggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="69187" stop="74380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69494" g_stop="69631" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="171" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69632" i_stop="69740" i_length="109">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69741" g_stop="69812" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="243" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69813" i_stop="70556" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70557" g_stop="70631" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="318" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70632" i_stop="71830" i_length="1199">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71831" g_stop="71911" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="399" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71912" i_stop="72577" i_length="666">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72578" g_stop="72647" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="469" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72648" i_stop="72722" i_length="75">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72723" g_stop="72814" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="561" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="72815" i_stop="73516" i_length="702">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73517" g_stop="73558" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="603" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="73559" i_stop="73649" i_length="91">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="73650" g_stop="73730" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="684" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="73731" i_stop="73908" i_length="178">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="73909" g_stop="74080" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="856" r_length="172" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E723246" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69494" e_stop="69631"/>
          <exon e_start="69741" e_stop="69812"/>
          <exon e_start="70557" e_stop="70631"/>
          <exon e_start="71831" e_stop="71911"/>
          <exon e_start="72578" e_stop="72647"/>
          <exon e_start="72723" e_stop="72814"/>
          <exon e_start="73517" e_stop="73558"/>
          <exon e_start="73650" e_stop="73730"/>
          <exon e_start="73909" e_stop="74080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTAAAAAACGGGTCGGGGCAATTGACCCATTTCAAATAGTAACATTTCCTTGTGTAAAATTCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCGAAAAAATGGAAGCCAATGCTCCTCAGTTTAAGGTAATTCTTTCAGATTATGAAAGATATTCTTATTGTACTCATAGTGAATCGAATTTACTAATTTCTCAGTTCAATTATTGAAATCCTTTAACTCGTTTTTGTTTTTAAGCTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATGGTAAATATCTAATTACTTATCAATTAGTTGTTGTTCTGTATGCATATATGATTGAATAAGTTCCTGCTCAAAGTCATTCTAATTGATATATGGTTAATAAGTAATAGATTGATTCAGATACTTATTTGTTTGTAGCAATATCGTTAAGTGATAATGAGTTGGTGTCACTGAGCTTAAATCAAATTATGAAGATCCATAATGTATATATACATTGAATAATAAATGTTTGATTTAGTAGATTAAAAATGTAAGAACATGTAAAGATACTAACAAGTAACACATTAAGGAGCTACTCAAACATCACTAATTAGGACATGAAGTTAATCTGAGTTTCGACATTAGCACCCGAACTCAACAGGTTAGGTTTATTATTATAGAATTAATTTCAAAAGCAAGTGTCAGCTTTTGTATGTAGAAGAATAAGAGATGCAAATTTTACAACATAATTCCATCATCGAACTAAAGCAGCAATTGGTTATTATGATATATTATTTGAATCAATGCCAAAAGCGTGACTACCACTGACCATCACCCCCAAGTCTCAAATAGTCGAGAGCAACACATTCTTGGGCCTTTAGGTGCTTGTTGTTGTTATTATTGCTAGGTGCTATAATTCTATATAAACGACACATATCATGTTTGGTGCTTTCACTGAATGTTAGATAAACAGAGATTCATATAGGATCCCCAACTCGATTGAGTTTTATTGGTGGATTAACAGCTTAGCATGTTCTTGTAATATAGTCTGCAGATATTGATGAGAAAGCTATCCGGAAAGAAAAGCCTGAAGATTTAGTTATGGCTCTTGCTGAGGCAAAGGTTTGTTTTCTTAAGAACTAGTGCTAGTCCACACATCTCTGAACATATTTTTGAAGTCATTTACTGCTTTGAAATTGCTGGGGGTTTATTCATTTTTCATTTACTGTCATACATGACACCGTTGTGATTTTTTCTTGTTTGTGGCATTCGTTTTTGATTTATGAATCACTCTATGCAATTTGTGATGCTTTTCTTTTAGAGTGTCTTGTAGTGATTTCAACCGTAATCTTAATTTTGGTGTTGATGTTATTTGTAAAATTGCTCTATTACCTATCTTGTTGTGATAGTGTATCTGATTTTTTGGCAAATCATTTAGCTAGCGTGTAGACGTAGATTTGGTTGAAACTTGAATTAAAAAGTTTTTGAACTTGTGTTGAAAAATAAATTTTGGAATGTTAAAGTTGAGTTAGCTTGCATTTTTCTTGAAAAGAGTTGAAGTTTGTGAGTGGAAGAAACTGTTTAGCCAAAAATCTGTCCCCGAATTTGATTTTTTCTTCAAAAACTGATCAAATACCATCAACAAACAAGGGGAAAAAGGGCATCCCAATGCTCAAAGCATCCTACATTCACGCAGGGTCCAGTGATGTTTTCGATTTTTCTTTTAAAATCTATGTCCAAACGGGAGCTTAGATTCTATTCCTCGTCTAGTTGAGTTCTTCACACTGCTTCATAGTATAATTGAAGCCTTGTTTTGAAATGCTTATCTTAATTCCATGAAATTGCATTCTGTGTCAGGCCGATGCTATCATATCAAAATTTCGAAAAACTGAAAACCCTGAGAAGGTTCTCAATCCAACAATTCTGGTTGCAGCTGACACAGTATGTCTTGCCTCTTTTGCCTTTTCAATCTCCCCGCCAAAAGTTATTTTTCTGTCTTCTATTTGATGAAATGAGACCTATAATATGTTATTTCTGCCCGCGATTTTGAATGATAATAAAATTGTCTGCCTTTTATTGTATTGTTTTTCTTGCTTTTATGCTTTGTACCGGTCCTTTTCTGTGTTTGCTTTTTTTCTTTCAAAATGATTCAATTTCTTGTTGGGATATTGGAGGATAATTGTGATGTCCACAAGCTTGCATAATTTTACAGTTTTTCTTTTTTCACATGATAAATTCTTTGCATTTATTGGACTTTGCTATATAGTTTCAAAGCATACATCATAATTGGCATTAACCTGAATAGCTGGAACTATAATCAGGCAGAAGCCATCATACCAAGGGTTTCAATTGGAGAATCCGAAGGGGATGCCGAGCCAACACTTCTAATTACGTGTGATCAAGTATACATAATTTCTGTTCTTCTCATCGTTTACGGTTAAATATCCGTTATTGACTTACTATAATGTTTTTTACCATTACATCATCTTTGTTTTCATTTCGTTTTTCCCCCAGCTAAAAATTACTATGTTACTTGAGGTGTTTGGTTCAAATATAATACCTGTCTCATCTTCTTTTGAGCGTAAAGTGGTGCCTTTTCAAATAGCTAATCTAAATTATACAATCCTTCATTCCTTCTGCATGAATTGATAACAATATTTCACAGAGATAATACTATCTTCCTTCAAAGTCCATTGTCAAGATTTGACTAGTGTAGAGCACTCAACGGTGTGACGTAGTGGTCAATGAAGTGGGGAGAACTATGAGGTATCATGTCAAATCCCAACCCCAACTCCAATGTAGGAAAAAATACTAGGTGATTTCTTCGTATCTTCCTAACCCTTAGTGGGTAGATTTATCCATTACCTGTGCGGGTGGGAGATGGAAAGTATAGTGGAATTGTCGAGGCGCACACAAGCTGGCCAAGCACCACTATCATTAGAAAAAAAAGGAAGAAGATCTGATTGGTGTTTAGACATGTACTCCCAGTATTCTCTGTTTTCTGCCATTTATTAATGTGTGCGCTTTTCTATGTTAATGATCTTATCCTAACTTGAAATGGTCTGGAGGTGGTGGTCTATGAAGGTGTGATCAGGGAAAAACCATCCAGTGAAGCAGAAGCACGTCAGTTCATGAAAGGTTTACCATTGCTTTAATCAATTTCTTACTATATTAGTTTTATAATTCTGCTAGTCTTACGCTGTCAACTTCCAGATTACGCCAATGGACATGCAGCAACCGTGAGTTCTGTTCTTGTCACGAACCTGACAACAGGAAGCAGAAGAGGAGAGTGGGACAAAGTCGAGGTACCTCTGTTGATTTCTCTCATTTTCAATTATCAAATGGGTCTCTATGGCTTTTTAGTTTTAGTTTTTTTCAATGGGTTTGTGTCTACTTCCTATCTCAAATTGTTGCAATGCATACCTCTTATTCTAAATCTTGATAAATAATAGTTTTAAAAAGTTCGGCAGTGATGAATGACTTCTACGCGTTGGGTAGGCTTATTGGATACTTCACAAGGTTCCAATTCCCTATAGCCATTCAATAGAAAAGTTATGCAGGGATGATTTGGTGGAGAGTAGAAGTTGGGTGGAATTGGAATTACGTATTTGGATTTGTGGACTGAAGAAAAAATCGACAACTCCTGAAATGATGTTGAAATATTGATGACACTCTACAAATTTCTCTTTCCCACATATTCAATACCACATTCTTAGGTTCTCAAGATTATTACATCTAAAAGCACCTATTGTCTAATGATCCTGGGAAATGTTGTCCTACGCTCGACTTAGCTTAATCAAGTGTTTTAAGCATGATACCGGAAAGCACAAACGAGTGGTAGATGGACCTATTGAGTTTCTTCTTCAACAATTCATTCAGATGTCCACAATATTTGCCTAGTCAAATGTGTACACGAACTGCTTGAGCCTTGAGATGTTCAGCATAATCGCTTTTGTTTTTATTTTTCACTCATCTAGGAAGAGTAATAACATTTCTTTTGATTGCAGATTTATTTCCACGACATACCAGATCAAGTCATAGATAAACTGGTATAACTTTCATCTGAATTGTTAGTTATTGATCATATCAAATGATGGATGCTGTACTTGTTGTCTTACGTTCTTTATTTTTCTTGATCAGATTGAGGAAGGGATAGTTCTTTATGCAGCTGGTGGCTTGATAATTGAACATCCTCTCGTTTTGCCTTATATTAAGGAAGTGGTAAGTGTTACACCACCACCTCTCTCTCTAATGTCACCCAACGTAAATCATAGTCGTGATGGTGTTACACATTTGTTTGTTTGACCCTTTGCCTTTATAGAGACCTAAACTTTTAGTACTTGTTAAAGTTCATCTGATATCGAAAATTCTGCATAATATTAATACCACATTTGGGCAGGTTGGCTCGACTGATAGCGTGATGGGTCTCCCAAAAGCTCTCACCGAAAGACTTATAAAGGAGGTTCTTTAGTATGACTATGATCCTGCTCCTACCTGAATGAGTTCGCGATCTATAATTTTGATATACGCTATTGGAGCTGAAATTATCATTGATTGTTCGCACTGGATGT</genome_strand>
        <mrna_strand>TTGTAAAAACCGGGTCAGGGCAATTGACCCATTTCAAATAGTAACATTTCCTTGTGTAAAATTCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCG-AAAAATGGAAGCCAATGCTCCTCAGTTTAAG.............................................................................................................CTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGATATTGATGAGAAAGCTATCCGGAAAGAAAAGCCTGAAGATTTAGTTATGGCTCTTGCTGAGGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCCATCATACCAAGGGTTTCAATTGGAGAATCCGAAGGGGATGCCGAGCCAACACTTCTAATTACGTGTGATCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGTCTATGAAGGTGTGATCAGGGAAAAACCATCCAGTGAAGCAGAAGCACGTCAGTTCATGAAAG...........................................................................ATTACGCCAATGGACATGCAGCAACCGTGAGTTCTGTTCTTGTCACGAACCTGACAACAGGAAGTAGAAGAGGAGAGTGGGACAAAGTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATTTCCACGACATACCAGATCAAGTCATAGATAAACTG...........................................................................................ATTGAGGAAGGGATAGTTCTTTATGCAGCTGGTGGCTTGATAATTGAACATCCTCTCGTTTTGCCTTATATTAAGGAAGTG..................................................................................................................................................................................GTTGGCTCGACTGATAGCGTGATGGGTCTCCCAAAAGCTCTCACCGAAAGACTTATAAAGGAGGTTCTTTAGTATGACTATGATCCTGCTGCTACCTGAATGAGTTCGCGATCTATAATTTTGATATACGCTATTGGAGCTGAAATTATCATTGATTGTTGGCACTGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E286042" ref_strand="+" ref_description="SGN-E286042 [cLES-13-G13]">
      <seq>tctctccaatcggactgcggcgttaatccgttcactctccggcgaaaaaatggaagccaatgctcctcagtttaagctaattttgggttcatcctctactgctcggaaaaagattttaggcgacatgggatacgagttcacaaccatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="69256" stop="70112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69556" g_stop="69631" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69632" i_stop="69740" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69741" g_stop="69812" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="148" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E286042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>148</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69556" e_stop="69631"/>
          <exon e_start="69741" e_stop="69812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCGAAAAAATGGAAGCCAATGCTCCTCAGTTTAAGGTAATTCTTTCAGATTATGAAAGATATTCTTATTGTACTCATAGTGAATCGAATTTACTAATTTCTCAGTTCAATTATTGAAATCCTTTAACTCGTTTTTGTTTTTAAGCTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATG</genome_strand>
        <mrna_strand>TCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCGAAAAAATGGAAGCCAATGCTCCTCAGTTTAAG.............................................................................................................CTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZDsYzY/sgn_ests_tomato" ref_id="SGN-E316089" ref_strand="+" ref_description="SGN-E316089 [cTOA-23-H23]">
      <seq>ttcagttattgagaattcagcgtgatcacattgaagatgaaatacaccatcttaagtggtctctcaagtctgaagaaactgatgatgccagcaaggagatgttttcggagcttcacaagctgcagtccaaaggtgaggaggtcaggctcagtcatcagcaggcacaacgagaatgtcaccaaaagttccacaaggtctggggacaactaatgaagactggttatcagaattctcgttttgcacatcaggtggaaagatttgcttgcctttataccagtcaagtcacaaacttgagcctgtattccccggataagtactataggcctagtgaggattttatgcctcatgaatttggtatcctctctatttgaggggatcttgtaatccaggggccaaaggcagtgcattttgaagaagagctttgctcattctaatttacattccgagttaccaacatggaaaatctttatgttttgtggtataataacttaaattgtatcatatttgtttgtgctgtctcatatatgcacttatctgattgtgaatttgaattatataaaacaactagaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-er2VC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="81621" stop="79347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81321" g_stop="81255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81254" i_stop="80714" i_length="541">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80713" g_stop="80656" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="125" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80655" i_stop="80458" i_length="198">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80457" g_stop="80398" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="185" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80397" i_stop="80106" i_length="292">
            <donor d_prob="0.746" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80105" g_stop="80043" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="248" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80042" i_stop="79973" i_length="70">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79972" g_stop="79647" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="574" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E316089" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81321" e_stop="81255"/>
          <exon e_start="80713" e_stop="80656"/>
          <exon e_start="80457" e_stop="80398"/>
          <exon e_start="80105" e_stop="80043"/>
          <exon e_start="79972" e_stop="79647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTATTGAGAATTCAGCGTGATCACATTGAAGATGAAATACACCATCTTAAGTGGTCTCTCAAGTAATTATTATCTCCATTTCATTTTTTATTGTAGAACTCATATGTGCATGAGTTATATTTCGGTGTGCATTTTATCTGTGCAACTGTTTCATGTTGAGTCCCTTCAGCAAAGGAAGTACTAGGATAAAAGAATTAAGGAAAATAAAGAAACAAAATCAAGTTTGCTGGAGAATTCATACAGCCGACTTCAGCTTATTTAAAATTGAGGTTTAGTTGATTCAGTGATTGGTTGAAGGTGGGTAGGAGGATGAGAAAGAATTAGAGCCTTTATTTATGAGTATAGACTTTCAGCCTTTTTGGGACTTTATATATGTCAGTGTGGAGTAGTCTTGTCAGCGAGCAGTTACAAATTTCCTTCAAGTGGAGAAATTATTGAACATTTTATTGTGCATCTTAAACAAAGATATTCGTTGTTCGTCGAACCATTGAGACAGTGAATACTCATACATTATGTTAATATAATTTTTCCATCATCTGAATTTGGCTGAAGGTAAAACTTTTGTCGTTGTCGATCATTTCATGAGCTGTCATTATGCTTCAGGTCTGAAGAAACTGATGATGCCAGCAAGGAGATGTTTTCGGAGCTTCACAAGCTGCAGGTTGGTTATTTCAAGATAGTATCAGTAGGAAGATAGTTTTCAATGTTACAAGAGAAAACAATTTTATATTTGGTCATTCTCTACATTGATACTTGTTACCTGTAGAATCAAATGTACTTGATCGCATTGAAGTGAATAGGTAATGACTTCTGTTATGAGGTTCAACTAATCTGGTGTTTTGATGGTGTCATTTTATAGTCCAAAGGTGAGGAGGTCAGGCTCAGTCATCAGCAGGCACAACGAGAATGTCACCAAAAGGTACGAGTGTTAAAGAGAGAATTTCCTCTAAATGTGGGATTATTTCTTTAGAGAACAGTTCATCCTTTTTCGGGAACAAGCTTTAGTGAAAGCTATTTAAAAATAACATGCATGTATAATACACAATTATACTTCCTTTAAACTTTGTAAAGTCAATGGATATATCCGTAACTTTATTCCCTTGGTTATATTTGACACTAACATGGTGTACAGTATTAACAAATCGATTTGGATTTTCAACAAGAGAAGTAGTGTACTTTTTTCTTTCTGATGAACTCATTAAACGTTTCAGTTCCACAAGGTCTGGGGACAACTAATGAAGACTGGTTATCAGAATTCTCGTTTTGCACATCAGGTACGATTGAATAATTGCAAAGTATATATCCTGCTCTTTGTGAGTGTGATCTTTACTTGTCGATTCACAGGTGGAAAGATTTGCTTGCCTTTATACCAGTCAAGTCACAAACTTGAGCCTGTATTCCCCGGATAAGTACTATAGGCCTAGTGAGGATTTTATGCCTCATGAATTTGGTATCCTCTCTATTTGAGGGGATCTTGTAATCCAGGGGCCAAAGGCAGTGCATTTTGAAGAAGAGCTTTGCTCATTCTAATTTACATTCCGAGTTACCAACATGGAAAATCTTTATGTTTTGTGGTATAATAACTTAAATTGTATCATATTTGTTTGTGCTGTCTCATATATGCACTTATCTGATTGTGAATTTGAATTATATAAAACAACTAGAATGGT</genome_strand>
        <mrna_strand>TTCAGTTATTGAGAATTCAGCGTGATCACATTGAAGATGAAATACACCATCTTAAGTGGTCTCTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAAGAAACTGATGATGCCAGCAAGGAGATGTTTTCGGAGCTTCACAAGCTGCAG......................................................................................................................................................................................................TCCAAAGGTGAGGAGGTCAGGCTCAGTCATCAGCAGGCACAACGAGAATGTCACCAAAAG....................................................................................................................................................................................................................................................................................................TTCCACAAGGTCTGGGGACAACTAATGAAGACTGGTTATCAGAATTCTCGTTTTGCACATCAG......................................................................GTGGAAAGATTTGCTTGCCTTTATACCAGTCAAGTCACAAACTTGAGCCTGTATTCCCCGGATAAGTACTATAGGCCTAGTGAGGATTTTATGCCTCATGAATTTGGTATCCTCTCTATTTGAGGGGATCTTGTAATCCAGGGGCCAAAGGCAGTGCATTTTGAAGAAGAGCTTTGCTCATTCTAATTTACATTCCGAGTTACCAACATGGAAAATCTTTATGTTTTGTGGTATAATAACTTAAATTGTATCATATTTGTTTGTGCTGTCTCATATATGCACTTATCTGATTGTGAATTTGAATTATATAAAACAACTAGAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>72</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="352" PGL_stop="4349"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="352" e_stop="796"/>
            <exon e_start="3688" e_stop="4349"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="352" e_stop="796" e_length="445"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3688" e_stop="4349" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="352" stop="743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="361" stop="796"/>
              <exon start="3688" stop="4148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="363" stop="793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="365" stop="796"/>
              <exon start="3688" stop="4139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="377" stop="796"/>
              <exon start="3688" stop="3891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="408" stop="796"/>
              <exon start="3688" stop="3776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="482" stop="796"/>
              <exon start="3688" stop="3995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3839" stop="4279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236981" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3883" stop="4349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3900" stop="4349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3992" stop="4279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237179" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCATTAAAGGGAAGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAG : GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCAATCATGCTTTACTTTGGTCCAAACATCTTTAAAACTCATGCTTCTGAAGTTGAACTAAAAACAGCTTTAA</gDNA_template>
            <first_frame> S  I  K  G  K  R  S  I  E  L  S  L  *  L  H  F  R  K  T  A  S  C  F  *  S  I  I  L  R  R  H  N  V  *  K  P  V  R  Y  R  C  D  D  M  V  A  G  G  K  V  I  S  G  G  V  C  N  G  G  S  E  A  R  F  G  G  D  R  F  E  I  E  D  A  C  D  S  G  V  C  *  Q  G  *  F  *  A  V  F  S  P  E  E  D  L  Q  S  *  *  P  H  R  S  C  N  R  W  T  Y  C  *  R  P  C  T  F  S  L  Y  A  Y  *  V  Y  *  L  *  L  L  L  *  V  A  V  T  C  R  A  S  G  C  S  A  C  *  *  S  S   : G  L  H  S  T  I  L  E  T  A  L  W  C  W  L  A  C  W  W  T  G  *  V  W  C  S  P  L  L  Q  L  P  *  W  *  L  L  *  V  S  S  V  C  H  W  I  S  V  T  S  C  K  N  L  L  G  T  *  V  *  D  F  H  G  F  F  T  *  K  P  A  *  G  C  T  L  C  S  E  R  N  S  A  R  G  K  T  D  K  L  Q  L  H  G  G  C  G  R  S  R  R  G  F  P  Y  P  G  Q  G  N  H  T  S  I  D  Q  *  I  *  D  S  W  R  R  C  S  C  R  S  P  G  R  G  C  N  *  *  T  S  S  T  *  R  R  C  C  P  C  *  S  R  S  C  P  N  G  Y  L  I  M  L  C  L  P  L  G  L  T  S  F  I  F  R  D  F  F  L  E  C  *  D  F  V  W  H  N  G  L  Y  F  L  L  G  C  F  I  M  Q  S  C  F  T  L  V  Q  T  S  L  K  L  M  L  L  K  L  N  *  K  Q  L  * </first_frame>
            <second_frame>  P  L  K  G  R  E  A  *  S  *  V  C  D  C  I  S  A  K  R  H  R  V  F  D  R  *  Y  F  V  D  T  M  F  R  N  Q  Y  D  T  D  V  T  T  W  S  P  A  G  R  L  F  Q  V  E  Y  A  M  E  A  V  K  Q  G  S  A  A  I  G  L  R  S  K  T  H  V  I  L  A  S  V  N  K  A  N  S  E  L  S  S  H  Q  K  K  I  F  K  V  D  D  H  I  G  V  A  I  A  G  L  T  A  D  G  R  V  L  S  R  Y  M  R  T  E  C  I  N  Y  S  Y  S  Y  E  S  P  L  P  V  G  R  L  V  V  Q  L  A  D  K  A  Q  :  V  C  T  Q  R  S  W  K  R  P  Y  G  V  G  L  L  V  G  G  L  D  E  S  G  A  H  L  Y  Y  N  C  P  S  G  N  Y  F  E  Y  Q  A  F  A  I  G  S  R  S  Q  A  A  K  T  Y  L  E  R  K  F  E  T  F  M  D  S  S  R  E  S  L  L  K  D  A  L  F  A  L  R  E  T  L  Q  G  E  K  L  T  S  S  N  C  T  V  A  V  V  G  V  G  E  A  F  H  T  L  D  K  E  T  I  Q  A  L  I  N  E  F  E  I  A  G  E  D  A  P  A  E  V  P  E  E  A  A  T  D  E  P  A  A  P  E  E  G  A  A  P  A  D  Q  G  A  A  P  M  D  I  *  *  C  Y  V  F  L  *  A  S  L  L  S  Y  S  E  I  S  S  *  N  V  E  I  L  C  G  T  M  G  Y  I  F  C  L  D  V  L  L  C  N  H  A  L  L  W  S  K  H  L  *  N  S  C  F  *  S  *  T  K  N  S  F   </second_frame>
            <third_frame>   H  *  R  E  E  K  H  R  V  E  F  V  I  A  F  P  Q  N  G  I  V  F  L  I  D  N  T  S  *  T  Q  C  L  E  T  S  T  I  P  M  *  R  H  G  R  R  R  E  G  Y  F  R  W  S  M  Q  W  R  Q  *  S  K  V  R  R  R  *  V  *  D  R  R  R  M  *  F  W  R  L  L  T  R  L  I  L  S  C  L  L  T  R  R  R  S  S  K  L  M  T  T  S  E  L  Q  S  L  D  L  L  L  T  A  V  Y  F  L  V  I  C  V  L  S  V  L  T  I  V  T  L  M  S  R  R  Y  L  S  G  V  W  L  F  S  L  L  I  K  L  R :   F  A  L  N  D  P  G  N  G  L  M  V  L  A  C  L  L  V  D  W  M  S  L  V  L  T  F  I  T  T  A  L  V  V  T  T  L  S  I  K  R  L  P  L  D  L  G  H  K  L  Q  K  P  T  W  N  V  S  L  R  L  S  W  I  L  H  V  K  A  C  L  R  M  H  S  L  L  *  E  K  L  C  K  G  K  N  *  Q  A  P  I  A  R  W  L  W  *  E  *  E  R  L  S  I  P  W  T  R  K  P  Y  K  H  *  S  M  N  L  R  *  L  E  K  M  L  L  P  K  S  R  K  R  L  Q  L  M  N  Q  Q  H  L  K  K  V  L  P  L  L  I  K  E  L  P  Q  W  I  F  D  N  V  M  S  S  F  R  P  H  F  F  H  I  Q  R  F  L  L  R  M  L  R  F  C  V  A  Q  W  V  I  F  S  A  W  M  F  Y  Y  A  I  M  L  Y  F  G  P  N  I  F  K  T  H  A  S  E  V  E  L  K  T  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="431" stop="796"/>
                    <exon start="3688" stop="4161"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFVDTMFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVILASVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRTECINYSYSYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFETFMDSSRESLLKDALFALRETLQGEKLTSSNCTVAVVGVGEAFHTLDKETIQALINEFEIAGEDAPAEVPEEAATDEPAAPEEGAAPADQGAAPMDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1449" e_stop="1971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1449" e_stop="1971" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1449" stop="1971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATAT</gDNA_template>
            <first_frame> K  L  H  K  Y  F  S  Y  F  Y  S  T  A  E  M  V  E  V  F  F  I  W  V  I  A  *  T  P  L  L  P  F  C  A  V  L  V  K  C  L  L  I  L  H  L  S  N  I  H  *  I  N  L  K  L  G  *  K  K  F  H  I  *  D  L  A  E  N  H  L  S  S  N  Y  D  F  L  H  F  *  C  M  Q  M  L  K  H  I  P  *  E  F  V  F  F  *  R  S  K  *  C  Y  I  S  Y  S  L  C  F  V  *  I  Q  V  G  P  L  D  T  S  A  D  P  E  V  T  L  I  I  T  *  D  T  T  N  E  C  I  I  R  Q  T  R  F  V  S  L  Y  K  I  I  *  L  G  V  E  S  K  K  E  K  K  T  S  T  I  C  G  L  K  Y  V  M  I  </first_frame>
            <second_frame>  N  S  T  N  T  S  V  I  F  I  V  L  L  K  W  W  K  F  F  S  S  G  *  *  L  E  H  L  Y  C  P  F  V  Q  F  L  *  N  A  C  S  F  Y  T  C  Q  I  S  I  R  S  I  *  N  L  G  E  K  S  S  I  F  K  I  *  Q  R  T  I  *  V  Q  I  M  I  F  C  T  F  S  A  C  K  C  L  N  I  F  H  K  S  L  S  F  S  R  E  V  S  S  V  I  Y  H  I  L  Y  V  L  F  E  Y  K  W  G  H  S  T  L  V  Q  I  Q  K  S  H  S  S  S  P  K  I  Q  P  M  N  V  *  Y  D  K  L  A  L  F  H  F  I  R  *  Y  D  W  V  L  S  L  R  K  K  R  R  P  L  Q  F  A  V  L  N  M  S  *  Y </second_frame>
            <third_frame>   T  P  Q  I  L  Q  L  F  L  *  Y  C  *  N  G  G  S  F  F  H  L  G  N  S  L  N  T  F  I  A  L  L  C  S  S  C  K  M  P  A  H  F  T  L  V  K  Y  P  L  D  Q  F  E  T  W  V  K  K  V  P  Y  L  R  F  S  R  E  P  S  K  F  K  L  *  F  S  A  L  L  V  H  A  N  A  *  T  Y  S  I  R  V  C  L  F  L  E  K  *  V  V  L  Y  I  I  F  F  M  F  C  L  N  T  S  G  A  T  R  H  *  C  R  S  R  S  H  T  H  H  H  L  R  Y  N  Q  *  M  Y  N  T  T  N  S  L  C  F  T  L  *  D  N  M  I  G  C  *  V  *  E  R  K  E  D  L  Y  N  L  R  S  *  I  C  H  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1660" stop="1863"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQIMIFCTFSACKCLNIFHKSLSFSREVSSVIYHILYVLFEYKWGHSTLVQIQKSHSSSPKIQPMNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8563" PGL_stop="5150"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8563" e_stop="8418"/>
            <exon e_start="7201" e_stop="6938"/>
            <exon e_start="6855" e_stop="6784"/>
            <exon e_start="6671" e_stop="6633"/>
            <exon e_start="6425" e_stop="6318"/>
            <exon e_start="6027" e_stop="5930"/>
            <exon e_start="5821" e_stop="5710"/>
            <exon e_start="5331" e_stop="5150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8563" e_stop="8418" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7201" e_stop="6938" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.957">
            <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6855" e_stop="6784" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6671" e_stop="6633" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.813">
            <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6425" e_stop="6318" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6027" e_stop="5930" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.937">
            <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5821" e_stop="5710" e_length="112"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5709" i_stop="5332" i_length="378"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="5331" e_stop="5150" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8563" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8554" stop="8418"/>
              <exon start="7201" stop="6940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8550" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7059" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6979" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6793" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
              <exon start="5331" stop="5201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6664" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
              <exon start="5331" stop="5150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6664" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
              <exon start="5331" stop="5225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6664" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
              <exon start="5331" stop="5247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6664" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA : GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG : TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAG : GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAG : TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG : ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAG : GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG : TTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATGGATTGGTAAGAGGACTGTCACTGGAGGAATGTTGTCGGGTGGGTTCTTGCAGCGGTGGTTCTGTGATTCGATCTCTTGGGGGTGAGGTAACACCTGA</gDNA_template>
            <first_frame> L  M  V  K  I  K  V  K  V  *  I  *  V  H  Q  L  Y  L  D  Y  N  H  L  P  *  *  I  I  *  L  R  W  I  G  L  F  S  P  K  F  P  V  N  V  V  A  L  S  Q :   L  Q  L  K  S  *  S  I  Y  S  T  S  L  T  P  I  S  F  L  L  L  T  M  N  P  Y  *  R  L  *  L  E  V  A  L  Q  I  Q  L  E  G  W  L  L  V  L  G  L  V  V  G  S  L  G  L  V  A  K  M  K  K  V  N  Y  L  *  A  T  W  A  F  T  K  W  I  S  Q  D  *  D  *  R  M  E  L  Q  L  S :   V  F  V  W  L  T  K  L  A  I  V  P  C  V  H  V  C  L  A  L  *  K  F  R :   Q  M  N  *  K  E  R  T  S  K  V  L  S :   G  W  Y  *  D  M  P  Y  *  M  *  K  L  L  R  W  P  S  K  *  Q  R  K  K  V  F  L  F  L  *  I  L  P  A  L  R :   W  *  G  S  L  N  H  L  *  L  N  Y  W  S  R  E  T  *  T  F  A  S  Q  T  R  M  K  Q  L  S  C  *   : G  V  K  R  K  Q  I  L  M  Q  H  L  N  I  W  L  N  I  A  S  G  L  L  S  P  *  L  K  T  D  A  L  R  N  M  R  K  S :   L  C  V  F  Q  Q  L  A  K  R  K  L  L  M  L  Q  V  Q  E  I  C  L  Q  V  D  F  C  M  D  W  *  E  D  C  H  W  R  N  V  V  G  W  V  L  A  A  V  V  L  *  F  D  L  L  G  V  R  *  H  L  </first_frame>
            <second_frame>  *  W  *  K  S  K  *  K  C  K  Y  R  C  T  S  C  T  W  T  T  T  I  C  P  S  R  S  Y  S  *  G  G  L  V  S  S  L  P  N  S  R  *  T  W  W  L  F  P   : S  C  S  *  R  V  E  V  Y  T  Q  R  A  *  R  P  Y  P  S  F  Y  *  Q  *  I  H  I  E  D  Y  S  W  R  *  R  C  K  Y  N  *  R  V  G  C  W  F  W  D  *  *  W  D  H  W  G  L  W  R  R  *  R  R  *  I  I  Y  E  Q  H  G  L  L  Q  S  G  S  L  K  I  E  I  E  E  W  N  Y  S  S   : V  C  L  S  G  *  R  S  W  Q  S  Y  H  A  S  M  F  V  W  L  C  E  S  S   : G  R  *  T  E  K  R  G  L  Q  R  F  *   : V  A  G  T  E  I  C  H  T  E  C  R  S  Y  *  G  G  H  Q  N  S  K  G  R  R  S  F  C  F  S  R  S  C  Q  L  *   : D  G  E  E  V  *  I  T  S  N  *  I  I  G  V  G  K  H  R  P  L  L  R  K  R  G  *  S  N  *  A  A  K  :  G  *  R  E  S  R  S  *  C  S  T  *  I  F  G  *  I  L  Q  V  G  C  C  H  L  S  S  K  R  M  H  C  E  T  *  E  R   : V  C  A  C  S  S  N  W  R  S  E  S  Y  *  C  Y  R  C  R  R  S  V  C  K  W  I  F  V  W  I  G  K  R  T  V  T  G  G  M  L  S  G  G  F  L  Q  R  W  F  C  D  S  I  S  W  G  *  G  N  T  * </second_frame>
            <third_frame>   N  G  E  N  Q  S  E  S  V  N  I  G  A  P  V  V  L  G  L  Q  P  F  A  L  V  D  H  I  A  K  V  D  W  S  L  L  S  Q  I  P  G  E  R  G  G  S  F  P  :  V  A  V  E  E  L  K  Y  I  L  N  E  L  N  A  H  I  L  P  S  T  D  N  E  S  I  L  K  T  I  A  G  G  S  V  A  N  T  I  R  G  L  A  A  G  F  G  I  S  S  G  I  I  G  A  C  G  E  D  E  E  G  K  L  F  M  S  N  M  G  F  Y  K  V  D  L  S  R  L  R  L  K  N  G  T  T  A  Q  :  C  V  C  L  V  D  E  V  G  N  R  T  M  R  P  C  L  S  G  S  V  K  V  Q  :  A  D  E  L  K  R  E  D  F  K  G  S  K  :  W  L  V  L  R  Y  A  I  L  N  V  E  V  I  K  V  A  I  K  I  A  K  E  E  G  L  F  V  S  L  D  L  A  S  F  E  :  M  V  R  K  F  K  S  P  L  I  E  L  L  E  S  G  N  I  D  L  C  F  A  N  E  D  E  A  T  E  L  L  R :   G  E  E  K  A  D  P  D  A  A  L  E  Y  L  A  K  Y  C  K  W  A  V  V  T  L  A  Q  N  G  C  I  A  K  H  E  K  E  :  F  V  R  V  P  A  I  G  E  A  K  V  T  D  A  T  G  A  G  D  L  F  A  S  G  F  L  Y  G  L  V  R  G  L  S  L  E  E  C  C  R  V  G  S  C  S  G  G  S  V  I  R  S  L  G  G  E  V  T  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8561" stop="8418"/>
                    <exon start="7201" stop="6938"/>
                    <exon start="6855" stop="6784"/>
                    <exon start="6671" stop="6633"/>
                    <exon start="6425" stop="6318"/>
                    <exon start="6027" stop="5930"/>
                    <exon start="5821" stop="5710"/>
                    <exon start="5331" stop="5152"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGENQSESVNIGAPVVLGLQPFALVDHIAKVDWSLLSQIPGERGGSFPVAVEELKYILNELNAHILPSTDNESILKTIAGGSVANTIRGLAAGFGISSGIIGACGEDEEGKLFMSNMGFYKVDLSRLRLKNGTTAQCVCLVDEVGNRTMRPCLSGSVKVQADELKREDFKGSKWLVLRYAILNVEVIKVAIKIAKEEGLFVSLDLASFEMVRKFKSPLIELLESGNIDLCFANEDEATELLRGEEKADPDAALEYLAKYCKWAVVTLAQNGCIAKHEKEFVRVPAIGEAKVTDATGAGDLFASGFLYGLVRGLSLEECCRVGSCSGGSVIRSLGGEVTP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16726" PGL_stop="10500"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16726" e_stop="16454"/>
            <exon e_start="14258" e_stop="14115"/>
            <exon e_start="12597" e_stop="12472"/>
            <exon e_start="12402" e_stop="12251"/>
            <exon e_start="11414" e_stop="10500"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16726" e_stop="16454" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.949">
            <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14258" e_stop="14115" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12597" e_stop="12472" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.935">
            <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12402" e_stop="12251" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11414" e_stop="10500" e_length="915"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16726" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="10912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16664" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16654" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16652" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16644" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16635" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16630" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16630" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16623" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16613" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16613" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16612" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16543" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16515" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12357" stop="12251"/>
              <exon start="11414" stop="10822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370674" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11343" stop="10839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11266" stop="10822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222070" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11052" stop="10500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267750" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGCATGTGGTATTCACTATTCTGCCCTACCAATTACTCTGTGGAAAGCCTTCATTTCTCACTCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC : TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG : GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG : GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG : GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAAGCATTTATGTTTAGCAATGCCCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</gDNA_template>
            <first_frame> R  H  V  V  F  T  I  L  P  Y  Q  L  L  C  G  K  P  S  F  L  T  Q  S  S  L  L  L  H  K  H  L  D  C  T  A  L  L  I  R  K  R  A  K  P  K  E  E  E  G  G  G  Q  T  W  E  P  S  G  K  Q  F  T  P  W  D  P  S  F  E  R  P  A  K  L  L  I  A  S  E  I  A  Y  K  A  A  P  T  *  R  N  T  :  C  P  G  I  G  L  L  *  T  Y  S  I  K  L  R  W  W  I  R  M  Y  L  *  L  Q  V  P  Q  S  L  E  M  S  M  W  D  A  I  H  L  F  G  M  D  V  Y  *  E  :  V  M  L  T  A  S  V  S  D  L  V  P  I  Y  R  T  T  P  L  F  M  W  P  N  Q  I  *  V  K  R  C  C  P  P  S  *  G  T  M  L  L  L  :  V  I  V  L  L  Y  M  A  A  P  L  R  M  R  P  S  L  V  W  G  P  H  C  L  M  V  F  M  *  R  N  M  P  W  L  L  Q  E  P  L  *  N  R  T  Q  G  F  P  P  E  R :   Y  G  Q  A  I  P  L  S  F  *  G  S  *  L  M  K  R  *  P  S  L  L  S  Q  Q  P  T  T  V  T  L  L  V  S  M  Q  L  R  I  P  S  P  L  T  K  L  N  L  K  R  C  F  V  R  S  M  P  N  V  M  R  N  M  I  L  *  L  V  L  S  V  K  H  L  P  S  L  Y  F  L  I  I  S  S  P  K  K  L  L  R  A  S  P  N  E  I  S  A  Q  A  T  L  S  F  F  A  F  Q  R  F  I  L  H  R  E  H  L  Y  G  E  Q  S  W  I  L  A  V  T  L  P  N  N  I  K  L  I  G  *  H  R  Y  V  T  A  L  *  L  R  L  L  P  L  I  S  Q  K  F  F  S  L  E  K  E  V  T  P  T  S  A  C  N  S  E  K  S  F  S  I  D  L  F  G  K  L  L  L  E  *  H  K  T  L  T  A  H  S  K  H  I  S  S  S  V  E  A  F  M  F  S  N  A  L  L  V  *  D  S  M  H  Y  *  D  P  *  L  S  K  H  S  A  C  G  E  I  N  D  L  K  P  R  H  V  S  Y  S  Y  I  N  Y  N  I  I  K  V  E  M  I  G  *  L  G  Y  E  E  P  K  D  E  *  F  P  R  K  F  S  L  V  L  L  C  F  Y  N  D  T  V  Y  E  *  L  A  S  V  E  L  F  G  F  E  C  S  H  L  W   </first_frame>
            <second_frame>  G  M  W  Y  S  L  F  C  P  T  N  Y  S  V  E  S  L  H  F  S  L  N  R  P  F  C  Y  T  N  T  L  T  A  Q  L  Y  *  S  E  R  G  L  N  R  K  K  K  K  E  E  V  K  H  G  N  P  R  E  S  N  L  L  P  G  I  H  R  S  S  D  R  Q  S  S  *  S  R  R  K  S  P  T  R  Q  L  P  H  R  G  T  P :   V  Q  A  S  D  S  Y  E  R  I  R  *  S  S  G  G  G  *  G  C  I  C  S  S  R  C  L  S  H  W  R  C  P  C  G  T  Q  F  I  Y  L  V  W  M  C  T  K  R :   *  C  *  Q  H  Q  C  R  I  W  Y  Q  Y  T  G  Q  L  P  C  S  C  G  Q  I  K  Y  K  S  K  G  A  A  H  H  H  R  E  Q  C  Y  C  W :   S  *  C  C  C  T  W  L  H  H  *  G  *  G  L  H  W  Y  G  G  H  T  A  *  W  C  S  C  R  E  T  C  H  G  C  C  R  S  P  C  E  T  E  H  K  D  S  L  R  R   : G  M  G  R  Q  S  R  *  V  S  E  E  A  N  *  *  R  D  S  L  H  C  S  V  S  N  Q  L  L  *  P  C  S  C  P  C  S  *  E  F  Q  V  L  *  R  N  *  I  *  K  D  A  S  *  E  V  C  Q  T  *  *  G  I  *  F  Y  D  W  C  C  P  *  N  T  S  R  A  C  T  S  *  *  Y  P  P  R  K  S  C  *  E  H  R  P  M  R  S  V  P  K  Q  L  S  L  F  L  L  S  R  D  L  F  Y  T  V  S  I  C  M  E  N  S  H  G  Y  W  L  L  P  F  Q  I  I  S  N  L  L  D  S  I  G  T  S  L  L  C  S  *  D  F  C  P  L  F  P  R  N  S  S  A  W  K  R  K  L  R  P  Q  V  L  V  T  L  R  N  H  F  Q  *  I  Y  L  V  N  C  Y  W  N  N  I  K  H  *  Q  H  I  P  N  I  F  L  H  Q  L  K  H  L  C  L  A  M  P  F  L  F  E  I  P  C  I  I  E  I  H  D  *  V  S  T  V  H  V  G  K  S  M  T  *  S  Q  G  M  L  A  I  V  I  L  I  I  I  L  *  R  *  R  *  L  A  D  W  G  M  K  S  Q  K  M  S  N  F  P  V  N  S  A  L  S  Y  C  V  F  I  M  T  L  Y  M  N  D  W  H  L  L  N  C  L  V  L  N  V  V  I  F  G  </second_frame>
            <third_frame>   A  C  G  I  H  Y  S  A  L  P  I  T  L  W  K  A  F  I  S  H  S  I  V  P  F  A  T  Q  T  P  *  L  H  S  S  T  D  Q  K  E  G  *  T  E  R  R  R  R  R  R  S  N  M  G  T  L  G  K  A  I  Y  S  L  G  S  I  V  R  A  T  G  K  A  L  D  R  V  G  N  R  L  Q  G  S  S  H  I  E  E  H   : L  S  R  H  R  T  L  M  N  V  F  D  K  A  P  V  V  D  K  D  V  F  V  A  P  G  A  S  V  I  G  D  V  H  V  G  R  N  S  S  I  W  Y  G  C  V  L  R   : G  D  V  N  S  I  S  V  G  S  G  T  N  I  Q  D  N  S  L  V  H  V  A  K  S  N  I  S  Q  K  V  L  P  T  I  I  G  N  N  V  T  V   : G  H  S  A  V  V  H  G  C  T  I  E  D  E  A  F  I  G  M  G  A  T  L  L  D  G  V  H  V  E  K  H  A  M  V  A  A  G  A  L  V  K  Q  N  T  R  I  P  S  G  E  :  V  W  A  G  N  P  A  K  F  L  R  K  L  T  D  E  E  I  A  F  I  A  Q  S  A  T  N  Y  C  N  L  A  R  V  H  A  A  E  N  S  K  S  F  D  E  I  E  F  E  K  M  L  R  K  K  Y  A  K  R  D  E  E  Y  D  S  M  I  G  V  V  R  E  T  P  P  E  L  V  L  P  D  N  I  L  P  E  K  A  A  K  S  I  A  Q  *  D  Q  C  P  S  N  S  L  F  F  C  F  P  E  I  Y  F  T  P  *  A  S  V  W  R  T  V  M  D  I  G  C  Y  P  S  K  *  Y  Q  T  Y  W  I  A  S  V  R  H  C  F  V  V  K  T  F  A  P  Y  F  P  E  I  L  Q  L  G  K  G  S  Y  A  H  K  C  L  *  L  *  E  I  I  F  N  R  F  I  W  *  I  V  I  G  I  T  *  N  I  D  S  T  F  Q  T  Y  F  F  I  S  *  S  I  Y  V  *  Q  C  P  S  C  L  R  F  H  A  L  L  R  S  M  T  K  *  A  Q  C  M  W  G  N  Q  *  P  K  A  K  A  C  *  L  *  L  Y  *  L  *  Y  Y  K  G  R  D  D  W  L  I  G  V  *  R  A  K  R  *  V  I  S  P  *  I  Q  P  C  L  I  V  F  L  *  *  H  C  I  *  M  I  G  I  C  *  I  V  W  F  *  M  *  S  S  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16598" stop="16454"/>
                    <exon start="14258" stop="14115"/>
                    <exon start="12597" stop="12472"/>
                    <exon start="12402" stop="12251"/>
                    <exon start="11414" stop="11130"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TERRRRRRSNMGTLGKAIYSLGSIVRATGKALDRVGNRLQGSSHIEEHLSRHRTLMNVFDKAPVVDKDVFVAPGASVIGDVHVGRNSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNISQKVLPTIIGNNVTVGHSAVVHGCTIEDEAFIGMGATLLDGVHVEKHAMVAAGALVKQNTRIPSGEVWAGNPAKFLRKLTDEEIAFIAQSATNYCNLARVHAAENSKSFDEIEFEKMLRKKYAKRDEEYDSMIGVVRETPPELVLPDNILPEKAAKSIAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16664" e_stop="16454"/>
            <exon e_start="14258" e_stop="14115"/>
            <exon e_start="12597" e_stop="12472"/>
            <exon e_start="11414" e_stop="10500"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16664" e_stop="16454" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.949">
            <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14258" e_stop="14115" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12597" e_stop="12472" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.986">
            <gDNA_intron_boundary i_start="12471" i_stop="11415" i_length="1057"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11414" e_stop="10500" e_length="915"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16664" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16644" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16630" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16556" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="11414" stop="11330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11343" stop="10839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11266" stop="10822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222070" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11052" stop="10500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267750" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC : TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG : GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG : GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAAGCATTTATGTTTAGCAATGCCCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</gDNA_template>
            <first_frame> S  I  V  P  F  A  T  Q  T  P  *  L  H  S  S  T  D  Q  K  E  G  *  T  E  R  R  R  R  R  R  S  N  M  G  T  L  G  K  A  I  Y  S  L  G  S  I  V  R  A  T  G  K  A  L  D  R  V  G  N  R  L  Q  G  S  S  H  I  E  E  H   : L  S  R  H  R  T  L  M  N  V  F  D  K  A  P  V  V  D  K  D  V  F  V  A  P  G  A  S  V  I  G  D  V  H  V  G  R  N  S  S  I  W  Y  G  C  V  L  R   : G  D  V  N  S  I  S  V  G  S  G  T  N  I  Q  D  N  S  L  V  H  V  A  K  S  N  I  S  Q  K  V  L  P  T  I  I  G  N  N  V  T  V   : G  M  G  R  Q  S  R  *  V  S  E  E  A  N  *  *  R  D  S  L  H  C  S  V  S  N  Q  L  L  *  P  C  S  C  P  C  S  *  E  F  Q  V  L  *  R  N  *  I  *  K  D  A  S  *  E  V  C  Q  T  *  *  G  I  *  F  Y  D  W  C  C  P  *  N  T  S  R  A  C  T  S  *  *  Y  P  P  R  K  S  C  *  E  H  R  P  M  R  S  V  P  K  Q  L  S  L  F  L  L  S  R  D  L  F  Y  T  V  S  I  C  M  E  N  S  H  G  Y  W  L  L  P  F  Q  I  I  S  N  L  L  D  S  I  G  T  S  L  L  C  S  *  D  F  C  P  L  F  P  R  N  S  S  A  W  K  R  K  L  R  P  Q  V  L  V  T  L  R  N  H  F  Q  *  I  Y  L  V  N  C  Y  W  N  N  I  K  H  *  Q  H  I  P  N  I  F  L  H  Q  L  K  H  L  C  L  A  M  P  F  L  F  E  I  P  C  I  I  E  I  H  D  *  V  S  T  V  H  V  G  K  S  M  T  *  S  Q  G  M  L  A  I  V  I  L  I  I  I  L  *  R  *  R  *  L  A  D  W  G  M  K  S  Q  K  M  S  N  F  P  V  N  S  A  L  S  Y  C  V  F  I  M  T  L  Y  M  N  D  W  H  L  L  N  C  L  V  L  N  V  V  I  F  G  </first_frame>
            <second_frame>  Q  S  S  L  L  L  H  K  H  L  D  C  T  A  L  L  I  R  K  R  A  K  P  K  E  E  E  G  G  G  Q  T  W  E  P  S  G  K  Q  F  T  P  W  D  P  S  F  E  R  P  A  K  L  L  I  A  S  E  I  A  Y  K  A  A  P  T  *  R  N  T  :  C  P  G  I  G  L  L  *  T  Y  S  I  K  L  R  W  W  I  R  M  Y  L  *  L  Q  V  P  Q  S  L  E  M  S  M  W  D  A  I  H  L  F  G  M  D  V  Y  *  E  :  V  M  L  T  A  S  V  S  D  L  V  P  I  Y  R  T  T  P  L  F  M  W  P  N  Q  I  *  V  K  R  C  C  P  P  S  *  G  T  M  L  L  L  :  V  W  A  G  N  P  A  K  F  L  R  K  L  T  D  E  E  I  A  F  I  A  Q  S  A  T  N  Y  C  N  L  A  R  V  H  A  A  E  N  S  K  S  F  D  E  I  E  F  E  K  M  L  R  K  K  Y  A  K  R  D  E  E  Y  D  S  M  I  G  V  V  R  E  T  P  P  E  L  V  L  P  D  N  I  L  P  E  K  A  A  K  S  I  A  Q  *  D  Q  C  P  S  N  S  L  F  F  C  F  P  E  I  Y  F  T  P  *  A  S  V  W  R  T  V  M  D  I  G  C  Y  P  S  K  *  Y  Q  T  Y  W  I  A  S  V  R  H  C  F  V  V  K  T  F  A  P  Y  F  P  E  I  L  Q  L  G  K  G  S  Y  A  H  K  C  L  *  L  *  E  I  I  F  N  R  F  I  W  *  I  V  I  G  I  T  *  N  I  D  S  T  F  Q  T  Y  F  F  I  S  *  S  I  Y  V  *  Q  C  P  S  C  L  R  F  H  A  L  L  R  S  M  T  K  *  A  Q  C  M  W  G  N  Q  *  P  K  A  K  A  C  *  L  *  L  Y  *  L  *  Y  Y  K  G  R  D  D  W  L  I  G  V  *  R  A  K  R  *  V  I  S  P  *  I  Q  P  C  L  I  V  F  L  *  *  H  C  I  *  M  I  G  I  C  *  I  V  W  F  *  M  *  S  S  L  V </second_frame>
            <third_frame>   N  R  P  F  C  Y  T  N  T  L  T  A  Q  L  Y  *  S  E  R  G  L  N  R  K  K  K  K  E  E  V  K  H  G  N  P  R  E  S  N  L  L  P  G  I  H  R  S  S  D  R  Q  S  S  *  S  R  R  K  S  P  T  R  Q  L  P  H  R  G  T  P :   V  Q  A  S  D  S  Y  E  R  I  R  *  S  S  G  G  G  *  G  C  I  C  S  S  R  C  L  S  H  W  R  C  P  C  G  T  Q  F  I  Y  L  V  W  M  C  T  K  R :   *  C  *  Q  H  Q  C  R  I  W  Y  Q  Y  T  G  Q  L  P  C  S  C  G  Q  I  K  Y  K  S  K  G  A  A  H  H  H  R  E  Q  C  Y  C  W :   Y  G  Q  A  I  P  L  S  F  *  G  S  *  L  M  K  R  *  P  S  L  L  S  Q  Q  P  T  T  V  T  L  L  V  S  M  Q  L  R  I  P  S  P  L  T  K  L  N  L  K  R  C  F  V  R  S  M  P  N  V  M  R  N  M  I  L  *  L  V  L  S  V  K  H  L  P  S  L  Y  F  L  I  I  S  S  P  K  K  L  L  R  A  S  P  N  E  I  S  A  Q  A  T  L  S  F  F  A  F  Q  R  F  I  L  H  R  E  H  L  Y  G  E  Q  S  W  I  L  A  V  T  L  P  N  N  I  K  L  I  G  *  H  R  Y  V  T  A  L  *  L  R  L  L  P  L  I  S  Q  K  F  F  S  L  E  K  E  V  T  P  T  S  A  C  N  S  E  K  S  F  S  I  D  L  F  G  K  L  L  L  E  *  H  K  T  L  T  A  H  S  K  H  I  S  S  S  V  E  A  F  M  F  S  N  A  L  L  V  *  D  S  M  H  Y  *  D  P  *  L  S  K  H  S  A  C  G  E  I  N  D  L  K  P  R  H  V  S  Y  S  Y  I  N  Y  N  I  I  K  V  E  M  I  G  *  L  G  Y  E  E  P  K  D  E  *  F  P  R  K  F  S  L  V  L  L  C  F  Y  N  D  T  V  Y  E  *  L  A  S  V  E  L  F  G  F  E  C  S  H  L  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16598" stop="16454"/>
                    <exon start="14258" stop="14115"/>
                    <exon start="12597" stop="12472"/>
                    <exon start="11414" stop="11392"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TERRRRRRSNMGTLGKAIYSLGSIVRATGKALDRVGNRLQGSSHIEEHLSRHRTLMNVFDKAPVVDKDVFVAPGASVIGDVHVGRNSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNISQKVLPTIIGNNVTVGMGRQSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11215" stop="11000"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLSVKHLPSLYFLIISSPKKLLRASPNEISAQATLSFFAFQRFILHREHLYGEQSWILAVTLPNNIKLIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="10719" PGL_stop="11104"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10719" e_stop="11104"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="10719" e_stop="11104" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10719" stop="11104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACATGCACTGTGCTTACTTAGTCATGGATCTCAATAATGCATGGAATCTCAAACAAGAAGGGCATTGCTAAACATAAATGCTTCAACTGATGAAGAAATATGTTTGGAATGTGCTGTCAATGTTTTATGTTATTCCAATAACAATTTACCAAATAAATCTATTGAAAATGATTTCTCAGAGTTACAAGCACTTGTGGGCGTAACTTCCTTTTCCAAGCTGAAGAATTTCTGGGAAATAAGGGGCAAAAGTCTTAACTACAAAGCAGTGACGTACCGATGCTATCCAATAAGTTTGATATTATTTGGAAGGGTAACAGCCAATATCCATGACTGTTCTCCATACAGATGCTCACGGTGTAAAATAAATCTCTGGAAAGCAAAAAA</gDNA_template>
            <first_frame> P  H  A  L  C  L  L  S  H  G  S  Q  *  C  M  E  S  Q  T  R  R  A  L  L  N  I  N  A  S  T  D  E  E  I  C  L  E  C  A  V  N  V  L  C  Y  S  N  N  N  L  P  N  K  S  I  E  N  D  F  S  E  L  Q  A  L  V  G  V  T  S  F  S  K  L  K  N  F  W  E  I  R  G  K  S  L  N  Y  K  A  V  T  Y  R  C  Y  P  I  S  L  I  L  F  G  R  V  T  A  N  I  H  D  C  S  P  Y  R  C  S  R  C  K  I  N  L  W  K  A  K   </first_frame>
            <second_frame>  H  M  H  C  A  Y  L  V  M  D  L  N  N  A  W  N  L  K  Q  E  G  H  C  *  T  *  M  L  Q  L  M  K  K  Y  V  W  N  V  L  S  M  F  Y  V  I  P  I  T  I  Y  Q  I  N  L  L  K  M  I  S  Q  S  Y  K  H  L  W  A  *  L  P  F  P  S  *  R  I  S  G  K  *  G  A  K  V  L  T  T  K  Q  *  R  T  D  A  I  Q  *  V  *  Y  Y  L  E  G  *  Q  P  I  S  M  T  V  L  H  T  D  A  H  G  V  K  *  I  S  G  K  Q  K  </second_frame>
            <third_frame>   T  C  T  V  L  T  *  S  W  I  S  I  M  H  G  I  S  N  K  K  G  I  A  K  H  K  C  F  N  *  *  R  N  M  F  G  M  C  C  Q  C  F  M  L  F  Q  *  Q  F  T  K  *  I  Y  *  K  *  F  L  R  V  T  S  T  C  G  R  N  F  L  F  Q  A  E  E  F  L  G  N  K  G  Q  K  S  *  L  Q  S  S  D  V  P  M  L  S  N  K  F  D  I  I  W  K  G  N  S  Q  Y  P  *  L  F  S  I  Q  M  L  T  V  *  N  K  S  L  E  S  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10758" stop="11102"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CMESQTRRALLNINASTDEEICLECAVNVLCYSNNNLPNKSIENDFSELQALVGVTSFSKLKNFWEIRGKSLNYKAVTYRCYPISLILFGRVTANIHDCSPYRCSRCKINLWKAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="23753" PGL_stop="24442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23753" e_stop="24442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="23753" e_stop="24442" e_length="690"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23753" stop="24442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545666" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTCTAATTGATCTTTAGTAATACACACAATGTTGAACTTATTCATCTATGCACATTGTACAAGAGACGTACAGATTATTTGCGAAAGGTAATTGTACAGGATAGATCATCTAAATACACAAGAGTCGGAGATATTATGACCGAGCAGGTACTCTATAGATATCGGTCTTCCTGGCTTTATCTTTTTTTCATCTGTCTTCTGTTTTGTGCTCAAATATTAGTACTACCATTGCAACAGAGCAAGCTGATAACCGTCACATCGGACACAAACATTCTTCAAGCAATGCAGCTCATGAGTGGTAAGTATTAGTTCTAACTCGCGAAGTTACTGATGCTTAATGCACTATGGAAATGTGATGGAACGTTTTATGATCACAGAGCACCACATACGACATGTTCCAGTGATCGATGGGAAGGTAGTAGGCATGATTTCTGTGGCGGATATTGTCAAAGCAGTGGTGGATCAACAAACTGGAGAAGTGAAGCAACTCAATCAATTCATCAAAGGAGATTACTACTGAAAAACAATATTAGCAAAGCCACAACAATACTCATTGTTAACTTTCAAATTGTCAAACAAGATCTAAAAACAGTGTTCAATTTTAACCAAAATTATATTTCGCTGTAAATCTAACTTAGCTTATGCCCATACACGACATTTAAAATTATATAAAATTAAATAAATAAAT</gDNA_template>
            <first_frame> V  S  N  *  S  L  V  I  H  T  M  L  N  L  F  I  Y  A  H  C  T  R  D  V  Q  I  I  C  E  R  *  L  Y  R  I  D  H  L  N  T  Q  E  S  E  I  L  *  P  S  R  Y  S  I  D  I  G  L  P  G  F  I  F  F  S  S  V  F  C  F  V  L  K  Y  *  Y  Y  H  C  N  R  A  S  *  *  P  S  H  R  T  Q  T  F  F  K  Q  C  S  S  *  V  V  S  I  S  S  N  S  R  S  Y  *  C  L  M  H  Y  G  N  V  M  E  R  F  M  I  T  E  H  H  I  R  H  V  P  V  I  D  G  K  V  V  G  M  I  S  V  A  D  I  V  K  A  V  V  D  Q  Q  T  G  E  V  K  Q  L  N  Q  F  I  K  G  D  Y  Y  *  K  T  I  L  A  K  P  Q  Q  Y  S  L  L  T  F  K  L  S  N  K  I  *  K  Q  C  S  I  L  T  K  I  I  F  R  C  K  S  N  L  A  Y  A  H  T  R  H  L  K  L  Y  K  I  K  *  I  N </first_frame>
            <second_frame>  S  L  I  D  L  *  *  Y  T  Q  C  *  T  Y  S  S  M  H  I  V  Q  E  T  Y  R  L  F  A  K  G  N  C  T  G  *  I  I  *  I  H  K  S  R  R  Y  Y  D  R  A  G  T  L  *  I  S  V  F  L  A  L  S  F  F  H  L  S  S  V  L  C  S  N  I  S  T  T  I  A  T  E  Q  A  D  N  R  H  I  G  H  K  H  S  S  S  N  A  A  H  E  W  *  V  L  V  L  T  R  E  V  T  D  A  *  C  T  M  E  M  *  W  N  V  L  *  S  Q  S  T  T  Y  D  M  F  Q  *  S  M  G  R  *  *  A  *  F  L  W  R  I  L  S  K  Q  W  W  I  N  K  L  E  K  *  S  N  S  I  N  S  S  K  E  I  T  T  E  K  Q  Y  *  Q  S  H  N  N  T  H  C  *  L  S  N  C  Q  T  R  S  K  N  S  V  Q  F  *  P  K  L  Y  F  A  V  N  L  T  *  L  M  P  I  H  D  I  *  N  Y  I  K  L  N  K  *   </second_frame>
            <third_frame>   L  *  L  I  F  S  N  T  H  N  V  E  L  I  H  L  C  T  L  Y  K  R  R  T  D  Y  L  R  K  V  I  V  Q  D  R  S  S  K  Y  T  R  V  G  D  I  M  T  E  Q  V  L  Y  R  Y  R  S  S  W  L  Y  L  F  F  I  C  L  L  F  C  A  Q  I  L  V  L  P  L  Q  Q  S  K  L  I  T  V  T  S  D  T  N  I  L  Q  A  M  Q  L  M  S  G  K  Y  *  F  *  L  A  K  L  L  M  L  N  A  L  W  K  C  D  G  T  F  Y  D  H  R  A  P  H  T  T  C  S  S  D  R  W  E  G  S  R  H  D  F  C  G  G  Y  C  Q  S  S  G  G  S  T  N  W  R  S  E  A  T  Q  S  I  H  Q  R  R  L  L  L  K  N  N  I  S  K  A  T  T  I  L  I  V  N  F  Q  I  V  K  Q  D  L  K  T  V  F  N  F  N  Q  N  Y  I  S  L  *  I  *  L  S  L  C  P  Y  T  T  F  K  I  I  *  N  *  I  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24070" stop="24381"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAKLLMLNALWKCDGTFYDHRAPHTTCSSDRWEGSRHDFCGGYCQSSGGSTNWRSEATQSIHQRRLLLKNNISKATTILIVNFQIVKQDLKTVFNFNQNYISL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23761" stop="24063"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIFSNTHNVELIHLCTLYKRRTDYLRKVIVQDRSSKYTRVGDIMTEQVLYRYRSSWLYLFFICLLFCAQILVLPLQQSKLITVTSDTNILQAMQLMSGKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="24729" PGL_stop="24300"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24729" e_stop="24300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="24729" e_stop="24300" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24729" stop="24300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAATCAATGATTCACACGATATTAACTCAATTTTTTAAGGGGAGAGTTCATCAAGGTAGCTTGCTACTTGGGCTCTCGTGTGTCGCCTATGCGTTGCACTACTGCATGGGCCTGGCACACCCCACCAAATCTACTTCAAATCTTTTGGTTGATATATTGTGTAATGTAATCTAATTCAAATCTTTCGGTTGATATATTGTGTAATGTGTTCTTATTATGTTTATACATACTTATATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATT</gDNA_template>
            <first_frame> L  A  K  I  K  C  S  I  C  S  Y  Q  F  N  I  *  Y  V  N  Q  *  F  T  R  Y  *  L  N  F  L  R  G  E  F  I  K  V  A  C  Y  L  G  S  R  V  S  P  M  R  C  T  T  A  W  A  W  H  T  P  P  N  L  L  Q  I  F  W  L  I  Y  C  V  M  *  S  N  S  N  L  S  V  D  I  L  C  N  V  F  L  L  C  L  Y  I  L  I  F  I  Y  L  I  L  Y  N  F  K  C  R  V  W  A  *  A  K  L  D  L  Q  R  N  I  I  L  V  K  I  E  H  C  F  *  I  L  F  D  N  L  K  V  N  N  E  Y  </first_frame>
            <second_frame>  W  L  R  S  S  V  V  S  V  L  I  S  L  I  S  D  M  *  I  N  D  S  H  D  I  N  S  I  F  *  G  E  S  S  S  R  *  L  A  T  W  A  L  V  C  R  L  C  V  A  L  L  H  G  P  G  T  P  H  Q  I  Y  F  K  S  F  G  *  Y  I  V  *  C  N  L  I  Q  I  F  R  L  I  Y  C  V  M  C  S  Y  Y  V  Y  T  Y  L  Y  L  F  I  *  F  Y  I  I  L  N  V  V  Y  G  H  K  L  S  *  I  Y  S  E  I  *  F  W  L  K  L  N  T  V  F  R  S  C  L  T  I  *  K  L  T  M  S  I </second_frame>
            <third_frame>   G  *  D  Q  V  *  Y  L  F  L  S  V  *  Y  L  I  C  E  S  M  I  H  T  I  L  T  Q  F  F  K  G  R  V  H  Q  G  S  L  L  L  G  L  S  C  V  A  Y  A  L  H  Y  C  M  G  L  A  H  P  T  K  S  T  S  N  L  L  V  D  I  L  C  N  V  I  *  F  K  S  F  G  *  Y  I  V  *  C  V  L  I  M  F  I  H  T  Y  I  Y  L  F  N  F  I  *  F  *  M  S  C  M  G  I  S  *  V  R  F  T  A  K  Y  N  F  G  *  N  *  T  L  F  L  D  L  V  *  Q  F  E  S  *  Q  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0132M08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="36541" PGL_stop="36713"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36541" e_stop="36713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="36541" e_stop="36713" e_length="173"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36541" stop="36713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCATCCTCCTTTCATTTCTTCAATTTCACACCCCCCCACATAACATTAGACATAGGGTTAGGGTTTCTTTTTTTTTTTTTTTAAATTAACAAAAAAAAAAAAATCATGGCATTAGGTGGTGGTAATGAGGAAAAAGAGATGAGAATTTCAGGTTTTCAAAATATAGATCTTG</gDNA_template>
            <first_frame> P  I  L  L  S  F  L  Q  F  H  T  P  P  H  N  I  R  H  R  V  R  V  S  F  F  F  F  L  N  *  Q  K  K  K  N  H  G  I  R  W  W  *  *  G  K  R  D  E  N  F  R  F  S  K  Y  R  S   </first_frame>
            <second_frame>  P  S  S  F  H  F  F  N  F  T  P  P  H  I  T  L  D  I  G  L  G  F  L  F  F  F  F  *  I  N  K  K  K  K  I  M  A  L  G  G  G  N  E  E  K  E  M  R  I  S  G  F  Q  N  I  D  L  </second_frame>
            <third_frame>   H  P  P  F  I  S  S  I  S  H  P  P  T  *  H  *  T  *  G  *  G  F  F  F  F  F  F  K  L  T  K  K  K  K  S  W  H  *  V  V  V  M  R  K  K  R  *  E  F  Q  V  F  K  I  *  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0132M08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="38173" PGL_stop="38526"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38173" e_stop="38526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38173" e_stop="38526" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38173" stop="38526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226155" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38281" stop="38526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226059" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</gDNA_template>
            <first_frame> M  L  K  Y  K  D  F  A  H  K  L  E  S  R  D  R  F  L  R  F  G  C  I  I  I  R  T  L  L  L  L  K  K  I  *  Y  K  K  I  N  L  N  *  F  C  L  I  K  V  L  R  E  K  M  K  L  N  F  L  G  F  G  L  C  L  C  N  L  T  R  N  R  T  *  L  V  F  F  V  F  F  L  G  G  S  M  *  Y  Y  C  N  Y  M  E  P  L  N  *  I  F  I  F  I  N  C  C  T  L  E  P  L  F  I  *  K  F  S  A </first_frame>
            <second_frame>  C  *  S  T  K  I  L  L  T  S  W  S  Q  E  T  G  F  *  G  L  D  A  *  *  *  E  P  F  F  C  *  K  K  Y  N  T  R  R  S  T  L  I  N  F  V  *  L  R  F  *  G  K  K  *  N  *  I  S  W  D  L  V  Y  A  Y  V  I  L  L  G  I  V  R  S  *  F  F  L  F  F  F  W  G  G  L  C  S  I  I  V  T  I  W  N  H  L  I  R  F  L  F  L  L  I  V  V  L  W  N  L  Y  S  S  E  N  F  Q   </second_frame>
            <third_frame>   A  E  V  Q  R  F  C  S  Q  V  G  V  K  R  Q  V  F  K  V  W  M  H  N  N  K  N  P  S  S  A  K  K  N  I  I  Q  E  D  Q  P  *  L  I  L  F  N  *  G  F  E  G  K  N  E  I  K  F  L  G  I  W  F  M  L  M  *  S  Y  *  E  S  Y  V  A  S  F  F  C  F  F  F  G  G  V  Y  V  V  L  L  *  L  Y  G  T  T  *  L  D  F  Y  F  Y  *  L  L  Y  F  G  T  F  I  H  L  K  I  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0132M08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="41431" PGL_stop="40824"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41431" e_stop="40824"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="41431" e_stop="40824" e_length="608"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41431" stop="40824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41430" stop="40903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41430" stop="40946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242712" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACATCCCTCTCTAACTCAACAAGTGTTCAACGCCACGCTTAAAAACAAGGCGGGAAAATGCTATGTTCGAACAGGGGATAGA</gDNA_template>
            <first_frame> F  Q  G  Q  R  V  C  *  H  P  R  V  H  L  S  I  V  L  G  F  G  L  N  *  Y  Q  S  S  R  Q  L  A  L  L  F  L  H  L  L  C  L  S  C  *  N  V  V  I  L  R  Q  R  L  Q  E  L  L  A  I  L  L  V  C  *  A  *  *  I  *  S  S  L  T  S  Q  F  T  M  I  L  S  K  N  L  L  K  F  L  G  L  L  G  *  I  L  W  Q  F  L  L  H  M  A  *  L  R  M  A  H  L  F  Q  H  H  G  E  V  V  S  L  T  N  F  R  R  I  K  S  S  C  Q  V  L  G  L  M  K  T  K  *  T  L  K  F  L  L  *  M  K  I  Q  M  R  L  L  K  M  E  L  K  V  K  Y  G  F  H  L  L  A  M  L  L  D  I  *  H  I  P  L  *  L  N  K  C  S  T  P  R  L  K  T  R  R  E  N  A  M  F  E  Q  G  I   </first_frame>
            <second_frame>  F  R  G  N  V  C  V  D  I  P  E  Y  I  C  Q  S  S  *  D  L  A  *  I  D  I  R  V  Q  G  N  L  H  S  C  S  F  I  C  F  A  S  R  V  E  T  W  S  Y  *  G  N  G  Y  R  N  C  *  Q  S  Y  *  Y  V  E  L  D  E  F  D  H  R  *  R  A  N  L  Q  *  F  Y  R  R  I  C  *  S  F  *  A  F  W  A  K  S  F  G  N  F  S  F  I  W  L  S  *  E  W  H  I  C  F  N  I  M  E  K  *  *  V  *  Q  I  F  D  V  *  K  A  L  A  K  C  *  A  *  *  R  P  S  R  H  *  N  S  C  C  E  *  R  Y  K  *  D  C  *  R  W  N  *  R  *  N  M  D  F  I  S  *  Q  C  Y  W  I  F  S  T  S  L  S  N  S  T  S  V  Q  R  H  A  *  K  Q  G  G  K  M  L  C  S  N  R  G  *  </second_frame>
            <third_frame>   S  G  A  T  C  V  L  T  S  P  S  T  F  V  N  R  P  R  I  W  L  E  L  I  S  E  F  K  A  T  C  T  P  V  P  S  F  A  L  P  L  V  L  K  R  G  H  T  E  A  T  V  T  G  T  V  S  N  P  I  S  M  L  S  L  M  N  L  I  I  V  N  E  P  I  Y  N  D  S  I  E  E  F  V  E  V  F  R  P  F  G  L  N  P  L  A  I  S  P  S  Y  G  L  A  E  N  G  T  F  V  S  T  S  W  R  S  S  K  F  N  K  F  S  T  Y  K  K  L  L  P  S  A  R  L  D  E  D  Q  V  D  I  E  I  L  V  V  N  E  D  T  N  E  I  V  E  D  G  I  E  G  E  I  W  I  S  S  P  S  N  A  I  G  Y  L  A  H  P  S  L  T  Q  Q  V  F  N  A  T  L  K  N  K  A  G  K  C  Y  V  R  T  G  D  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41429" stop="40824"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGATCVLTSPSTFVNRPRIWLELISEFKATCTPVPSFALPLVLKRGHTEATVTGTVSNPISMLSLMNLIIVNEPIYNDSIEEFVEVFRPFGLNPLAISPSYGLAENGTFVSTSWRSSKFNKFSTYKKLLPSARLDEDQVDIEILVVNEDTNEIVEDGIEGEIWISSPSNAIGYLAHPSLTQQVFNATLKNKAGKCYVRTGDR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="45508" PGL_stop="43779"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45508" e_stop="45407"/>
            <exon e_start="44072" e_stop="43779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45508" e_stop="45407" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.888">
            <gDNA_intron_boundary i_start="45406" i_stop="44073" i_length="1334"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44072" e_stop="43779" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45508" stop="45407"/>
              <exon start="44072" stop="43779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349426" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTAATGTTAGTTTACAGCAGCAGATATTGTCAATGCAGCAGCAGCAACAACAACAACATCAGCAGTTCTTGGATCCTATTAATGGGATTCTTAATGTTGG : GAGCTAAGTGATTTAAGGGTCTAAGGATGCGAACAACCAAGCTAAATAATTTAAGGGGCTAAGGATGCAAACCAAGCTTAAGTATGAATCTGGTGGAATTTAAGAGCTTGCTAATTGGAAAAGAGCGGGTCCAATGAAGACACACTAAGTTATGCCTTTCATATTCTCAACATGTACTGCACACGTTTATTCCATCTACGTTTATATTAAAATTTTGTGTATACACATTCTTGAAATAAAGGTTGAAAAATGAAACATAAAAGTATTGAAGTGAAAATCTTTCTTATTTGGTTC</gDNA_template>
            <first_frame> F  *  C  *  F  T  A  A  D  I  V  N  A  A  A  A  T  T  T  T  S  A  V  L  G  S  Y  *  W  D  S  *  C  W  :  E  L  S  D  L  R  V  *  G  C  E  Q  P  S  *  I  I  *  G  A  K  D  A  N  Q  A  *  V  *  I  W  W  N  L  R  A  C  *  L  E  K  S  G  S  N  E  D  T  L  S  Y  A  F  H  I  L  N  M  Y  C  T  R  L  F  H  L  R  L  Y  *  N  F  V  Y  T  H  S  *  N  K  G  *  K  M  K  H  K  S  I  E  V  K  I  F  L  I  W  F </first_frame>
            <second_frame>  S  N  V  S  L  Q  Q  Q  I  L  S  M  Q  Q  Q  Q  Q  Q  Q  H  Q  Q  F  L  D  P  I  N  G  I  L  N  V  G :   S  *  V  I  *  G  S  K  D  A  N  N  Q  A  K  *  F  K  G  L  R  M  Q  T  K  L  K  Y  E  S  G  G  I  *  E  L  A  N  W  K  R  A  G  P  M  K  T  H  *  V  M  P  F  I  F  S  T  C  T  A  H  V  Y  S  I  Y  V  Y  I  K  I  L  C  I  H  I  L  E  I  K  V  E  K  *  N  I  K  V  L  K  *  K  S  F  L  F  G   </second_frame>
            <third_frame>   L  M  L  V  Y  S  S  R  Y  C  Q  C  S  S  S  N  N  N  N  I  S  S  S  W  I  L  L  M  G  F  L  M  L   : G  A  K  *  F  K  G  L  R  M  R  T  T  K  L  N  N  L  R  G  *  G  C  K  P  S  L  S  M  N  L  V  E  F  K  S  L  L  I  G  K  E  R  V  Q  *  R  H  T  K  L  C  L  S  Y  S  Q  H  V  L  H  T  F  I  P  S  T  F  I  L  K  F  C  V  Y  T  F  L  K  *  R  L  K  N  E  T  *  K  Y  *  S  E  N  L  S  Y  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0132M08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="53482" PGL_stop="59292"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53482" e_stop="53773"/>
            <exon e_start="54761" e_stop="54823"/>
            <exon e_start="54903" e_stop="54992"/>
            <exon e_start="55094" e_stop="55153"/>
            <exon e_start="55257" e_stop="55322"/>
            <exon e_start="55423" e_stop="55488"/>
            <exon e_start="55581" e_stop="55656"/>
            <exon e_start="56330" e_stop="56394"/>
            <exon e_start="56484" e_stop="56576"/>
            <exon e_start="56685" e_stop="56768"/>
            <exon e_start="56855" e_stop="56939"/>
            <exon e_start="57532" e_stop="57578"/>
            <exon e_start="57729" e_stop="57791"/>
            <exon e_start="57873" e_stop="57932"/>
            <exon e_start="58028" e_stop="58093"/>
            <exon e_start="58188" e_stop="58247"/>
            <exon e_start="58543" e_stop="58657"/>
            <exon e_start="58937" e_stop="59292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="0.997"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.751" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.773" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.739" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.784" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.025" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.722" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.512" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.759" acc_prob="0.506" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.511" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="53482" e_stop="53773" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="53774" i_stop="54760" i_length="987"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54761" e_stop="54823" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54824" i_stop="54902" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54903" e_stop="54992" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="54993" i_stop="55093" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55094" e_stop="55153" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.825">
            <gDNA_intron_boundary i_start="55154" i_stop="55256" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55257" e_stop="55322" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.751" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55323" i_stop="55422" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55423" e_stop="55488" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.773" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55489" i_stop="55580" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55581" e_stop="55656" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.739" acc_prob="0.961">
            <gDNA_intron_boundary i_start="55657" i_stop="56329" i_length="673"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="56330" e_stop="56394" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.977" acc_prob="0.784">
            <gDNA_intron_boundary i_start="56395" i_stop="56483" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="56484" e_stop="56576" e_length="93"/>
          </exon>
          <intron i_serial="9" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56577" i_stop="56684" i_length="108"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="56685" e_stop="56768" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.025" acc_prob="0.990">
            <gDNA_intron_boundary i_start="56769" i_stop="56854" i_length="86"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="56855" e_stop="56939" e_length="85"/>
          </exon>
          <intron i_serial="11" don_prob="0.978" acc_prob="0.992">
            <gDNA_intron_boundary i_start="56940" i_stop="57531" i_length="592"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="57532" e_stop="57578" e_length="47"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57579" i_stop="57728" i_length="150"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="57729" e_stop="57791" e_length="63"/>
          </exon>
          <intron i_serial="13" don_prob="0.722" acc_prob="0.988">
            <gDNA_intron_boundary i_start="57792" i_stop="57872" i_length="81"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="57873" e_stop="57932" e_length="60"/>
          </exon>
          <intron i_serial="14" don_prob="0.512" acc_prob="0.974">
            <gDNA_intron_boundary i_start="57933" i_stop="58027" i_length="95"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="58028" e_stop="58093" e_length="66"/>
          </exon>
          <intron i_serial="15" don_prob="0.759" acc_prob="0.506">
            <gDNA_intron_boundary i_start="58094" i_stop="58187" i_length="94"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="58188" e_stop="58247" e_length="60"/>
          </exon>
          <intron i_serial="16" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58248" i_stop="58542" i_length="295"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="58543" e_stop="58657" e_length="115"/>
          </exon>
          <intron i_serial="17" don_prob="0.992" acc_prob="0.511">
            <gDNA_intron_boundary i_start="58658" i_stop="58936" i_length="279"/>
          </intron>
          <exon e_serial="18" e_score="0.997">
            <gDNA_exon_boundary e_start="58937" e_stop="59292" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53482" stop="53773"/>
              <exon start="54761" stop="54823"/>
              <exon start="54903" stop="54992"/>
              <exon start="55094" stop="55153"/>
              <exon start="55257" stop="55322"/>
              <exon start="55423" stop="55488"/>
              <exon start="55581" stop="55656"/>
              <exon start="56330" stop="56394"/>
              <exon start="56484" stop="56576"/>
              <exon start="56685" stop="56768"/>
              <exon start="56855" stop="56939"/>
              <exon start="57532" stop="57578"/>
              <exon start="57729" stop="57791"/>
              <exon start="57873" stop="57932"/>
              <exon start="58028" stop="58093"/>
              <exon start="58188" stop="58247"/>
              <exon start="58543" stop="58657"/>
              <exon start="58937" stop="59290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58598" stop="58657"/>
              <exon start="58937" stop="59292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227180" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTAATTCCAGTATTTTCAACAACTTCATTTTTCTTGATCTGTAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTTGAAGAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGGAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCACT : TGTGGCTACACTTCACCAACGCAAATTGCAATTACCAAAGATCTGAAGCTCACTGTTTCTGAG : TTCTCTTTGTTCGGTTCTTTATCCAATGTGGGTGCTATGGTTGGTGCAATATCTAGTGGTCAAATTTCTGAGTACATTGGGCGAAAAGGG : TCTTTAATGATAGCTGCTATACCAAATATCATTGGTTGGCTTGCCATCTCATTTGCCAAA : GATCCTTCTTTTCTATACATGGGAAGATTGTTGGAGGGCTTTGGTGTGGGAATAATCTCTTATGTG : GTTCCTGTATATATTGCTGAGATTGCACCTCAGAATATGAGAGGGGGTCTAGGGTCTGTTAACCAG : CTCTCTGTTACAATTGGGATCATGTTGTCCTATTTACTGGGACTTTTTGTTAATTGGAGGCTGCTTGCTGTTCTTG : GAGCATTACCTTGCCTAGCACTGATACCTGGACTATTTTTCATCCCCGAATCTCCTCGGTGGTTG : GCCAAAATGGGTTTAACAGAAGATTTTGAAACTTCGTTGCAAGTTCTTCGAGGCTTTGAGGCTGATATTACCAATGAAGTAAATGAAATTAAG : AGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTTGCGGATCTCAAACATAGAAGATATTGGTTTCCTCTCATG : GTAGGAATTGGACTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCG : GTATTTCGTCAAGTAATGCTGCAACTTTTGGTGTCGGTGCTATACAG : GTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGACAGAACTGGACGTAGAATTTTATTAATT : GTTTCCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAG : GGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTG : TTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAG : ATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAG : GAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCGAAAT</gDNA_template>
            <first_frame> C  *  F  Q  Y  F  Q  Q  L  H  F  S  *  S  V  V  Q  I  S  R  T  I  E  K  R  G  *  L  K  I  *  R  K  K  N  E  F  Q  R  R  E  Q  *  R  G  S  E  K  A  I  F  T  Y  W  E  L  V  S  Y  G  V  K  T  V  *  Y  D  G  F  F  S  S  Y  S  *  *  F  Y  F  C  S  C  L  C  S  H  S  C  F  G  P  N  P  V  W  F  H   : L  W  L  H  F  T  N  A  N  C  N  Y  Q  R  S  E  A  H  C  F  *   : V  L  F  V  R  F  F  I  Q  C  G  C  Y  G  W  C  N  I  *  W  S  N  F  *  V  H  W  A  K  R   : V  F  N  D  S  C  Y  T  K  Y  H  W  L  A  C  H  L  I  C  Q   : R  S  F  F  S  I  H  G  K  I  V  G  G  L  W  C  G  N  N  L  L  C   : G  S  C  I  Y  C  *  D  C  T  S  E  Y  E  R  G  S  R  V  C  *  P   : A  L  C  Y  N  W  D  H  V  V  L  F  T  G  T  F  C  *  L  E  A  A  C  C  S  W :   S  I  T  L  P  S  T  D  T  W  T  I  F  H  P  R  I  S  S  V  V   : G  Q  N  G  F  N  R  R  F  *  N  F  V  A  S  S  S  R  L  *  G  *  Y  Y  Q  *  S  K  *  N  *   : E  V  C  S  I  I  N  K  P  K  N  S  N  A  F  C  G  S  Q  T  *  K  I  L  V  S  S  H   : G  R  N  W  T  T  Y  P  A  T  V  R  R  N  Q  R  C  Y  I  L  F  Q  Q  H  F  P  I  C  R :   Y  F  V  K  *  C  C  N  F  W  C  R  C  Y  T   : G  C  C  N  C  S  F  Y  M  A  G  G  Q  N  W  T  *  N  F  I  N   : C  F  L  G  W  N  G  C  *  S  S  Y  C  L  R  C  L  L  S  K   : G  L  C  I  *  G  F  Y  P  L  W  C  L  G  N  S  V  R  S  W  G  G   : V  H  D  Y  F  I  L  A  R  N  G  T  N  S  M  A  Y  N  V  *   : D  S  S  N  Q  D  Q  R  S  R  W  K  Y  G  N  I  S  Q  L  V  I  L  V  G  N  N  S  D  C  T  V  A  Y  G  L  E  Q  W  R :   N  L  H  Y  L  H  G  Y  V  C  F  H  R  G  V  R  G  N  L  G  T  G  D  E  R  E  N  S  R  G  N  S  V  F  F  Q  M  K  T  Y  P  L  P  N  R  P  L  *  S  F  V  L  F  V  T  K  L  N  F  P  C  A  K  V  S  I  F  H  I  Y  R  E  E  *  V  A  H  A  A  S  E  C  V  H  F  I  L  I  L  P  F  A  V  I  Y  C  M  I  L  L  F  L  Y  I  L  S  V  I  I  P  F  N  L  K  *  S  A  K  </first_frame>
            <second_frame>  A  N  S  S  I  F  N  N  F  I  F  L  D  L  *  F  K  F  Q  E  L  *  R  K  G  V  D  S  K  F  E  E  K  K  M  S  F  R  E  E  N  N  E  G  D  L  K  K  P  F  L  H  T  G  S  W  Y  R  M  G  S  R  Q  S  S  M  M  G  S  S  Q  A  I  R  D  S  S  I  S  V  L  A  C  V  L  I  V  A  L  G  P  I  Q  F  G  F  T  :  C  G  Y  T  S  P  T  Q  I  A  I  T  K  D  L  K  L  T  V  S  E  :  F  S  L  F  G  S  L  S  N  V  G  A  M  V  G  A  I  S  S  G  Q  I  S  E  Y  I  G  R  K  G  :  S  L  M  I  A  A  I  P  N  I  I  G  W  L  A  I  S  F  A  K  :  D  P  S  F  L  Y  M  G  R  L  L  E  G  F  G  V  G  I  I  S  Y  V  :  V  P  V  Y  I  A  E  I  A  P  Q  N  M  R  G  G  L  G  S  V  N  Q  :  L  S  V  T  I  G  I  M  L  S  Y  L  L  G  L  F  V  N  W  R  L  L  A  V  L   : G  A  L  P  C  L  A  L  I  P  G  L  F  F  I  P  E  S  P  R  W  L  :  A  K  M  G  L  T  E  D  F  E  T  S  L  Q  V  L  R  G  F  E  A  D  I  T  N  E  V  N  E  I  K  :  R  S  V  A  S  S  T  N  R  R  T  A  M  R  F  A  D  L  K  H  R  R  Y  W  F  P  L  M  :  V  G  I  G  L  L  I  L  Q  Q  L  G  G  I  N  G  V  I  F  Y  S  S  N  I  F  L  S  A   : G  I  S  S  S  N  A  A  T  F  G  V  G  A  I  Q  :  V  V  A  T  A  V  S  T  W  L  V  D  R  T  G  R  R  I  L  L  I  :  V  S  S  A  G  M  A  V  S  L  L  I  V  S  V  A  F  Y  L  K  :  G  Y  V  S  E  D  S  T  L  Y  G  V  L  G  I  V  S  V  V  G  V  V  :  F  M  I  I  S  F  S  L  G  M  G  P  I  P  W  L  I  M  S  E  :  I  L  P  I  K  I  K  G  L  A  G  S  T  A  T  L  A  N  W  L  F  S  W  V  I  T  V  T  A  P  L  L  M  A  W  S  S  G   : G  T  F  T  I  Y  M  V  M  C  A  F  T  V  A  F  V  A  I  W  V  P  E  T  K  G  R  T  L  E  E  I  Q  F  S  F  R  *  K  L  T  P  S  Q  T  G  L  C  D  P  L  F  F  L  S  Q  N  S  I  S  L  V  Q  K  F  Q  F  F  T  Y  I  G  K  N  E  L  H  M  L  L  Q  S  V  Y  I  S  S  *  S  C  H  L  L  *  F  T  V  *  F  Y  Y  F  C  I  F  *  V  *  L  Y  H  S  I  *  N  K  V  R  N </second_frame>
            <third_frame>   L  I  P  V  F  S  T  T  S  F  F  L  I  C  S  S  N  F  K  N  Y  R  E  K  G  L  T  Q  N  L  K  K  K  K  *  V  S  E  K  R  T  M  K  G  I  *  K  S  H  F  Y  I  L  G  V  G  I  V  W  G  Q  D  S  L  V  *  W  V  L  L  K  L  F  V  I  V  L  F  L  F  L  L  V  F  S  *  L  L  W  A  Q  S  S  L  V  S  L :   V  A  T  L  H  Q  R  K  L  Q  L  P  K  I  *  S  S  L  F  L  S :   S  L  C  S  V  L  Y  P  M  W  V  L  W  L  V  Q  Y  L  V  V  K  F  L  S  T  L  G  E  K  G :   L  *  *  *  L  L  Y  Q  I  S  L  V  G  L  P  S  H  L  P  K :   I  L  L  F  Y  T  W  E  D  C  W  R  A  L  V  W  E  *  S  L  M  W :   F  L  Y  I  L  L  R  L  H  L  R  I  *  E  G  V  *  G  L  L  T  S :   S  L  L  Q  L  G  S  C  C  P  I  Y  W  D  F  L  L  I  G  G  C  L  L  F  L  :  E  H  Y  L  A  *  H  *  Y  L  D  Y  F  S  S  P  N  L  L  G  G  W :   P  K  W  V  *  Q  K  I  L  K  L  R  C  K  F  F  E  A  L  R  L  I  L  P  M  K  *  M  K  L  R :   G  L  *  H  H  Q  Q  T  E  E  Q  Q  C  V  L  R  I  S  N  I  E  D  I  G  F  L  S  W :   *  E  L  D  Y  L  S  C  N  S  *  E  E  S  T  V  L  Y  S  I  P  A  T  F  S  Y  L  P  :  V  F  R  Q  V  M  L  Q  L  L  V  S  V  L  Y  R :   L  L  Q  L  Q  F  L  H  G  W  W  T  E  L  D  V  E  F  Y  *  L :   F  P  R  L  E  W  L  L  V  F  L  L  S  P  L  P  S  I  *  R :   V  M  Y  L  R  I  L  P  S  M  V  S  W  E  *  C  P  *  L  G  W  C :   S  *  L  F  H  S  R  S  E  W  D  Q  F  H  G  L  *  C  L  R :   F  F  Q  S  R  S  K  V  S  L  E  V  R  Q  H  *  P  T  G  Y  S  R  G  *  *  Q  *  L  H  R  C  L  W  L  G  A  V  E  :  E  P  S  L  F  T  W  L  C  V  L  S  P  W  R  S  W  Q  F  G  Y  R  R  R  K  G  E  L  *  R  K  F  S  F  L  S  D  E  N  L  P  P  P  K  Q  A  F  V  I  L  C  S  F  C  H  K  T  Q  F  P  L  C  K  S  F  N  F  S  H  I  *  G  R  M  S  C  T  C  C  F  R  V  C  T  F  H  L  D  L  A  I  C  C  N  L  L  Y  D  F  I  I  F  V  Y  S  K  C  D  Y  T  I  Q  F  K  I  K  C  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53549" stop="53773"/>
                    <exon start="54761" stop="54823"/>
                    <exon start="54903" stop="54992"/>
                    <exon start="55094" stop="55153"/>
                    <exon start="55257" stop="55322"/>
                    <exon start="55423" stop="55488"/>
                    <exon start="55581" stop="55656"/>
                    <exon start="56330" stop="56394"/>
                    <exon start="56484" stop="56576"/>
                    <exon start="56685" stop="56768"/>
                    <exon start="56855" stop="56939"/>
                    <exon start="57532" stop="57578"/>
                    <exon start="57729" stop="57791"/>
                    <exon start="57873" stop="57932"/>
                    <exon start="58028" stop="58093"/>
                    <exon start="58188" stop="58247"/>
                    <exon start="58543" stop="58657"/>
                    <exon start="58937" stop="59049"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1494</number_coding_nucleotides>
                  <number_encoded_amino_acids>498</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKGVDSKFEEKKMSFREENNEGDLKKPFLHTGSWYRMGSRQSSMMGSSQAIRDSSISVLACVLIVALGPIQFGFTCGYTSPTQIAITKDLKLTVSEFSLFGSLSNVGAMVGAISSGQISEYIGRKGSLMIAAIPNIIGWLAISFAKDPSFLYMGRLLEGFGVGIISYVVPVYIAEIAPQNMRGGLGSVNQLSVTIGIMLSYLLGLFVNWRLLAVLGALPCLALIPGLFFIPESPRWLAKMGLTEDFETSLQVLRGFEADITNEVNEIKRSVASSTNRRTAMRFADLKHRRYWFPLMVGIGLLILQQLGGINGVIFYSSNIFLSAGISSSNAATFGVGAIQVVATAVSTWLVDRTGRRILLIVSSAGMAVSLLIVSVAFYLKGYVSEDSTLYGVLGIVSVVGVVFMIISFSLGMGPIPWLIMSEILPIKIKGLAGSTATLANWLFSWVITVTAPLLMAWSSGGTFTIYMVMCAFTVAFVAIWVPETKGRTLEEIQFSFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="63343" PGL_stop="61312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63133" e_stop="63131"/>
            <exon e_start="62914" e_stop="61312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.833" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63133" e_stop="63131" e_length="3"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.833">
            <gDNA_intron_boundary i_start="63130" i_stop="62915" i_length="216"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="62914" e_stop="61312" e_length="1603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63133" stop="63131"/>
              <exon start="62914" stop="62343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62603" stop="62114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62459" stop="62034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62299" stop="61571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61921" stop="61429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61843" stop="61444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61630" stop="61312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303639" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGG : TTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCTGCATACACGCTGGTGGAAGGGCTGTTATTGACGAGCTGGAAAAGAATTTACAGCTGACACAGGTTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAACATCTATTCATGACTGAGCTTATGAGTAGTGGATTCAAGTTGCTAACACGCACTGTTATTTCTCACTGTTAGTGAAATGATTCCATTAATGGCATGTTCATCATTTTCTATTTGCTTA</gDNA_template>
            <first_frame> R  :  F  T  S  *  L  G  R  G  R  F  I  *  L  I  T  L  V  I  K  L  L  S  I  S  R  L  P  M  N  G  S  C  S  I  H  G  S  Q  V  I  L  M  S  R  R  L  S  F  R  G  R  F  W  S  V  L  A  S  G  T  K  L  M  F  L  R  L  C  I  S  F  L  R  S  L  L  C  R  L  R  G  K  K  L  S  K  L  C  L  V  P  W  I  N  C  L  L  I  P  L  *  N  L  R  K  *  V  C  L  L  *  I  V  V  C  S  I  R  L  H  R  F  Q  L  *  L  *  T  S  I  S  *  E  V  I  *  G  V  L  I  W  E  V  W  V  V  V  L  V  *  L  P  L  I  L  L  R  T  C  C  K  C  T  E  I  P  M  L  L  L  L  V  L  R  I  L  R  R  T  G  I  L  G  I  R  S  P  C  *  Y  Q  I  V  C  L  E  S  E  V  L  L  F  C  C  L  T  S  P  W  I  E  E  G  R  N  I  S  L  F  M  L  L  G  H  I  V  G  L  M  I  R  H  F  V  V  F  T  K  N  R  M  M  L  G  K  L  G  F  L  C  Q  K  I  S  W  Q  S  L  V  E  R  L  R  R  I  S  L  H  W  V  L  L  F  Y  P  S  V  S  S  F  C  S  L  V  L  *  *  L  R  K  Y  S  I  S  I  S  S  L  T  F  Q  I  S  S  W  P  L  I  I  S  A  Y  T  L  V  E  G  L  L  L  T  S  W  K  R  I  Y  S  *  H  R  F  T  L  R  H  L  E  *  P  C  T  A  L  E  I  L  H  P  A  L  S  G  M  N  W  R  I  *  R  P  K  E  E  *  R  K  V  T  K  F  G  R  L  H  L  E  V  A  L  N  V  I  V  L  F  G  R  H  Y  E  M  *  S  L  L  P  M  V  P  G  R  I  V  S  T  G  I  L  *  K  *  C  H  N  T  V  E  I  M  I  R  Q  V  K  G  Y  L  *  L  L  P  C  T  S  W  H  L  F  S  *  S  R  V  M  L  Y  F  C  S  R  V  K  Y  H  F  V  L  F  L  V  *  S  L  M  L  I  C  V  V  P  F  Q  S  I  T  C  M  T  S  Y  M  *  Q  F  L  F  Y  C  S  Y  F  P  D  K  H  L  F  M  T  E  L  M  S  S  G  F  K  L  L  T  R  T  V  I  S  H  C  *  *  N  D  S  I  N  G  M  F  I  I  F  Y  L  L  </first_frame>
            <second_frame>  G :   L  H  H  D  S  A  E  A  G  L  F  D  *  L  L  L  L  *  S  S  *  A  S  Q  G  S  L  *  T  V  H  A  A  F  T  A  H  R  *  F  *  *  V  V  A  *  V  S  E  E  D  S  G  A  F  W  P  R  G  R  N  L  C  S  *  G  Y  A  S  A  S  S  A  A  F  Y  A  G  C  E  G  R  S  *  A  S  Y  V  W  C  L  G  *  I  V  C  *  Y  L  C  E  T  *  E  N  R  C  A  C  C  E  L  *  F  V  Q  S  D  S  I  A  F  S  Y  D  C  E  Q  V  *  V  E  R  *  Y  K  E  F  *  S  G  R  Y  G  L  *  C  W  C  N  C  R  *  S  C  *  G  H  V  A  S  A  Q  K  Y  L  C  C  C  C  *  Y  *  E  Y  Y  A  E  L  V  F  W  E  *  E  V  H  V  D  T  K  L  F  V  *  S  R  R  F  C  C  S  A  V  *  Q  V  R  G  *  K  K  G  E  I  *  A  C  S  C  C  *  D  T  S  W  G  *  *  *  G  I  S  L  C  L  P  R  T  G  *  C  W  E  N  W  G  F  F  V  K  R  S  H  G  N  R  W  W  S  A  *  D  E  Y  H  Y  I  G  S  S  C  S  T  H  Q  *  A  A  S  V  L  W  F  S  D  N  *  E  N  I  Q  *  A  Y  Q  A  L  H  S  R  F  Q  V  G  L  *  S  F  L  H  T  R  W  W  K  G  C  Y  *  R  A  G  K  E  F  T  A  D  T  G  S  R  *  G  I  S  N  D  P  A  P  L  W  K  Y  F  I  Q  L  Y  L  V  *  I  G  V  Y  R  G  Q  R  K  N  E  E  R  *  Q  S  L  A  D  C  I  W  K  W  L  *  M  *  *  C  C  L  A  G  T  T  K  C  K  A  F  S  R  W  S  L  G  G  L  Y  R  Q  V  S  C  K  S  S  V  I  T  L  W  R  S  *  L  G  K  L  R  A  I  C  S  C  F  R  V  R  H  G  T  S  S  L  E  A  E  *  C  S  T  S  V  H  E  S  S  I  I  L  S  F  S  *  F  R  A  L  C  *  F  V  L  Y  H  F  N  L  L  L  V  *  L  H  I  C  S  N  S  Y  F  I  V  V  I  F  L  I  N  I  Y  S  *  L  S  L  *  V  V  D  S  S  C  *  H  A  L  L  F  L  T  V  S  E  M  I  P  L  M  A  C  S  S  F  S  I  C  L </second_frame>
            <third_frame>    : V  Y  I  M  T  R  P  R  P  V  Y  L  I  D  Y  S  C  Y  K  A  P  E  H  L  K  A  P  Y  E  R  F  M  Q  H  S  R  L  T  G  D  F  D  E  S  S  L  E  F  Q  R  K  I  L  E  R  S  G  L  G  D  E  T  Y  V  P  E  A  M  H  Q  L  P  P  Q  P  S  M  Q  A  A  R  E  E  A  E  Q  V  M  F  G  A  L  D  K  L  F  A  N  T  S  V  K  P  K  K  I  G  V  L  V  V  N  C  S  L  F  N  P  T  P  S  L  S  A  M  I  V  N  K  Y  K  L  R  G  N  I  R  S  F  N  L  G  G  M  G  C  S  A  G  V  I  A  V  D  L  A  K  D  M  L  Q  V  H  R  N  T  Y  A  V  V  V  S  T  E  N  I  T  Q  N  W  Y  F  G  N  K  K  S  M  L  I  P  N  C  L  F  R  V  G  G  S  A  V  L  L  S  N  K  S  V  D  R  R  R  A  K  Y  K  L  V  H  V  V  R  T  H  R  G  A  D  D  K  A  F  R  C  V  Y  Q  E  Q  D  D  A  G  K  T  G  V  S  L  S  K  D  L  M  A  I  A  G  G  A  L  K  T  N  I  T  T  L  G  P  L  V  L  P  I  S  E  Q  L  L  F  F  G  S  L  I  I  K  K  I  F  N  K  H  I  K  P  Y  I  P  D  F  K  L  A  F  D  H  F  C  I  H  A  G  G  R  A  V  I  D  E  L  E  K  N  L  Q  L  T  Q  V  H  V  E  A  S  R  M  T  L  H  R  F  G  N  T  S  S  S  S  I  W  Y  E  L  A  Y  I  E  A  K  G  R  M  K  K  G  N  K  V  W  Q  I  A  F  G  S  G  F  K  C  N  S  A  V  W  Q  A  L  R  N  V  K  P  S  P  D  G  P  W  E  D  C  I  D  R  Y  P  V  K  V  V  S  *  H  C  G  D  H  D  *  A  S  *  G  L  S  V  A  A  S  V  Y  V  M  A  P  L  L  L  K  P  S  D  A  L  L  L  F  T  S  Q  V  S  F  C  P  F  L  S  L  E  P  Y  A  N  L  C  C  T  I  S  I  Y  Y  L  Y  D  F  I  Y  V  A  I  P  I  L  L  *  L  F  S  *  *  T  S  I  H  D  *  A  Y  E  *  W  I  Q  V  A  N  T  H  C  Y  F  S  L  L  V  K  *  F  H  *  W  H  V  H  H  F  L  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63131" stop="61671"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYIMTRPRPVYLIDYSCYKAPEHLKAPYERFMQHSRLTGDFDESSLEFQRKILERSGLGDETYVPEAMHQLPPQPSMQAAREEAEQVMFGALDKLFANTSVKPKKIGVLVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSVDRRRAKYKLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFGSLIIKKIFNKHIKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLTQVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMKKGNKVWQIAFGSGFKCNSAVWQALRNVKPSPDGPWEDCIDRYPVKVVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61640" stop="61446"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLSVAASVYVMAPLLLKPSDALLLFTSQVSFCPFLSLEPYANLCCTISIYYLYDFIYVAIPILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63343" e_stop="62606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="63343" e_stop="62606" e_length="738"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63343" stop="62786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63340" stop="62606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63333" stop="62791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63290" stop="62813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGTCAGCTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTA</gDNA_template>
            <first_frame> K  K  S  A  S  V  V  V  *  *  R  E  E  E  E  E  *  E  R  F  *  S  L  S  N  S  L  I  S  P  I  Y  S  L  S  F  S  P  P  P  *  T  E  P  P  A  R  K  S  T  P  R  T  A  V  V  V  S  Q  S  E  F  R  S  S  R  V  G  G  C  R  I  S  F  R  V  *  T  *  S  T  L  N  *  V  T  I  T  *  S  L  I  C  *  L  Y  V  *  F  L  *  W  L  *  F  *  L  K  L  H  K  *  I  L  M  I  F  V  N  Y  G  Y  I  C  S  I  I  *  S  L  L  L  F  V  P  P  F  W  F  L  D  P  Q  F  T  S  *  L  G  R  G  R  F  I  *  L  I  T  L  V  I  K  L  L  S  I  S  R  L  P  M  N  G  S  C  S  I  H  G  S  Q  V  I  L  M  S  R  R  L  S  F  R  G  R  F  W  S  V  L  A  S  G  T  K  L  M  F  L  R  L  C  I  S  F  L  R  S  L  L  C  R  L  R  G  K  K  L  S  K  L  C  L  V  P  W  I  N  C  L  L  I  P  L  *  N  L </first_frame>
            <second_frame>  K  S  Q  L  Q  W  *  Y  S  R  E  K  K  K  K  S  E  R  G  F  R  A  F  Q  T  L  *  F  P  Q  F  I  L  S  L  F  H  R  R  H  E  R  S  H  R  H  A  S  Q  H  R  E  R  R  W  W  *  A  S  R  S  S  D  P  A  E  *  E  V  A  G  F  P  S  E  C  K  L  K  V  R  *  T  R  L  P  L  L  D  L  S  F  V  D  S  M  F  D  S  C  N  G  C  D  F  N  *  S  F  T  N  E  S  *  *  Y  S  S  I  M  A  T  F  A  V  *  S  S  L  C  Y  Y  L  F  R  R  F  G  F  W  I  H  S  L  H  H  D  S  A  E  A  G  L  F  D  *  L  L  L  L  *  S  S  *  A  S  Q  G  S  L  *  T  V  H  A  A  F  T  A  H  R  *  F  *  *  V  V  A  *  V  S  E  E  D  S  G  A  F  W  P  R  G  R  N  L  C  S  *  G  Y  A  S  A  S  S  A  A  F  Y  A  G  C  E  G  R  S  *  A  S  Y  V  W  C  L  G  *  I  V  C  *  Y  L  C  E  T   </second_frame>
            <third_frame>   K  V  S  F  S  G  S  I  V  E  R  R  R  R  R  V  R  E  V  L  E  P  F  K  L  F  D  F  P  N  L  F  S  L  F  F  T  A  A  M  N  G  A  T  G  T  Q  V  N  T  A  N  G  G  G  G  E  P  V  G  V  Q  I  Q  Q  S  R  R  L  P  D  F  L  Q  S  V  N  L  K  Y  V  K  L  G  Y  H  Y  L  I  S  H  L  L  T  L  C  L  I  P  V  M  A  V  I  L  I  E  A  S  Q  M  N  P  D  D  I  R  Q  L  W  L  H  L  Q  Y  N  L  V  S  V  I  I  C  S  A  V  L  V  F  G  S  T  V  Y  I  M  T  R  P  R  P  V  Y  L  I  D  Y  S  C  Y  K  A  P  E  H  L  K  A  P  Y  E  R  F  M  Q  H  S  R  L  T  G  D  F  D  E  S  S  L  E  F  Q  R  K  I  L  E  R  S  G  L  G  D  E  T  Y  V  P  E  A  M  H  Q  L  P  P  Q  P  S  M  Q  A  A  R  E  E  A  E  Q  V  M  F  G  A  L  D  K  L  F  A  N  T  S  V  K  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63341" stop="62607"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVSFSGSIVERRRRRVREVLEPFKLFDFPNLFSLFFTAAMNGATGTQVNTANGGGGEPVGVQIQQSRRLPDFLQSVNLKYVKLGYHYLISHLLTLCLIPVMAVILIEASQMNPDDIRQLWLHLQYNLVSVIICSAVLVFGSTVYIMTRPRPVYLIDYSCYKAPEHLKAPYERFMQHSRLTGDFDESSLEFQRKILERSGLGDETYVPEAMHQLPPQPSMQAAREEAEQVMFGALDKLFANTSVKP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="69221" PGL_stop="68572"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69221" e_stop="68572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="69221" e_stop="68572" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69221" stop="68572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCACCCCAACCTCCATACCCATACACCATTGGTTATATTCTTCCCCCATCATTTTAATGATTTCAAAATTCTTAGTATCAATGGTTATCTTCTTCCCCCACCATTCTAATGATTTCAAAATTCTTAGCATTTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTATCTAAAAAACGAGATGAAGTAAAAAATTATAATTAATAAAAAAGCTGATGAAAAAAAAAATTTGTCGAGTTAAAGATAACTGTACAGGGAAGGGGGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGCAGGGAAGTGGGTGTTTAGGTTTTTCTCTCTCTTTTTTTCTTTTTTTTTTTACTTTAAAATAATTTTTATTTTTTTACTTAATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCGATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTG</gDNA_template>
            <first_frame> P  T  P  T  S  I  P  I  H  H  W  L  Y  S  S  P  I  I  L  M  I  S  K  F  L  V  S  M  V  I  F  F  P  H  H  S  N  D  F  K  I  L  S  I  F  V  S  F  I  N  F  S  K  R  F  F  S  P  S  F  S  I  *  K  T  R  *  S  K  K  L  *  L  I  K  K  L  M  K  K  K  I  C  R  V  K  D  N  C  T  G  K  G  G  S  P  L  M  E  L  E  E  M  Y  V  L  F  Q  L  K  A  G  K  W  V  F  R  F  F  S  L  F  F  S  F  F  F  Y  F  K  I  I  F  I  F  L  L  N  N  I  M  F  K  *  F  F  G  L  K  N  N  T  C  H  Y  L  I  G  Q  I  D  M  S  A  R  V  Y  F  T  H  S  L  F  F  V  Y  S  R  K  N  V  Q  M  V  Q  I  Q  N  G  *  S  V  R  *  V  V  R  L  V  E  V  S  K  *  I  I  G  T  S  L  S  G  R  I  *  L   </first_frame>
            <second_frame>  P  P  Q  P  P  Y  P  Y  T  I  G  Y  I  L  P  P  S  F  *  *  F  Q  N  S  *  Y  Q  W  L  S  S  S  P  T  I  L  M  I  S  K  F  L  A  F  L  F  H  L  *  I  F  R  R  D  S  F  P  H  L  S  L  S  K  K  R  D  E  V  K  N  Y  N  *  *  K  S  *  *  K  K  K  F  V  E  L  K  I  T  V  Q  G  R  G  G  R  H  *  W  S  *  R  K  C  M  F  C  S  S  *  R  Q  G  S  G  C  L  G  F  S  L  S  F  F  L  F  F  F  T  L  K  *  F  L  F  F  Y  L  I  I  *  C  L  N  N  F  L  D  *  K  I  T  H  V  I  I  *  L  V  K  L  T  C  Q  R  E  C  I  S  H  I  L  Y  F  L  F  I  L  E  K  M  F  K  W  F  K  F  R  M  V  E  V  F  D  R  *  Y  V  *  L  R  C  L  N  E  *  S  G  Q  V  *  V  A  A  Y  D  F  </second_frame>
            <third_frame>   H  P  N  L  H  T  H  T  P  L  V  I  F  F  P  H  H  F  N  D  F  K  I  L  S  I  N  G  Y  L  L  P  P  P  F  *  *  F  Q  N  S  *  H  F  C  F  I  Y  K  F  F  E  E  I  L  F  P  I  F  L  Y  L  K  N  E  M  K  *  K  I  I  I  N  K  K  A  D  E  K  K  N  L  S  S  *  R  *  L  Y  R  E  G  G  V  A  I  N  G  V  R  G  N  V  C  F  V  P  V  E  G  R  E  V  G  V  *  V  F  L  S  L  F  F  F  F  F  L  L  *  N  N  F  Y  F  F  T  *  *  Y  N  V  *  I  I  F  W  I  K  K  *  H  M  S  L  F  D  W  S  N  *  H  V  S  A  S  V  F  H  T  F  S  I  F  C  L  F  S  K  K  C  S  N  G  S  N  S  E  W  L  K  C  S  I  G  S  T  S  S  *  G  V  *  M  N  N  R  D  K  F  E  W  P  H  M  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69005" stop="68790"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIKKLMKKKICRVKDNCTGKGGSPLMELEEMYVLFQLKAGKWVFRFFSLFFSFFFYFKIIFIFLLNNIMFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="69494" PGL_stop="74080"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69494" e_stop="69631"/>
            <exon e_start="69741" e_stop="69812"/>
            <exon e_start="70557" e_stop="70631"/>
            <exon e_start="71831" e_stop="71911"/>
            <exon e_start="72578" e_stop="72647"/>
            <exon e_start="72723" e_stop="72814"/>
            <exon e_start="73517" e_stop="73558"/>
            <exon e_start="73650" e_stop="73730"/>
            <exon e_start="73909" e_stop="74080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.573" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.625" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.987" e_score="0.989"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="69494" e_stop="69631" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.573">
            <gDNA_intron_boundary i_start="69632" i_stop="69740" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69741" e_stop="69812" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69813" i_stop="70556" i_length="744"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70557" e_stop="70631" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.738">
            <gDNA_intron_boundary i_start="70632" i_stop="71830" i_length="1199"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71831" e_stop="71911" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.625">
            <gDNA_intron_boundary i_start="71912" i_stop="72577" i_length="666"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72578" e_stop="72647" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="72648" i_stop="72722" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="72723" e_stop="72814" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.987">
            <gDNA_intron_boundary i_start="72815" i_stop="73516" i_length="702"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73517" e_stop="73558" e_length="42"/>
          </exon>
          <intron i_serial="7" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73559" i_stop="73649" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="73650" e_stop="73730" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.929" acc_prob="0.947">
            <gDNA_intron_boundary i_start="73731" i_stop="73908" i_length="178"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="73909" e_stop="74080" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69494" stop="69631"/>
              <exon start="69741" stop="69812"/>
              <exon start="70557" stop="70631"/>
              <exon start="71831" stop="71911"/>
              <exon start="72578" stop="72647"/>
              <exon start="72723" stop="72814"/>
              <exon start="73517" stop="73558"/>
              <exon start="73650" stop="73730"/>
              <exon start="73909" stop="74080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69556" stop="69631"/>
              <exon start="69741" stop="69812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286042" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTAAAAAACGGGTCGGGGCAATTGACCCATTTCAAATAGTAACATTTCCTTGTGTAAAATTCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCGAAAAAATGGAAGCCAATGCTCCTCAGTTTAAG : CTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATG : TCTGCAGATATTGATGAGAAAGCTATCCGGAAAGAAAAGCCTGAAGATTTAGTTATGGCTCTTGCTGAGGCAAAG : GCAGAAGCCATCATACCAAGGGTTTCAATTGGAGAATCCGAAGGGGATGCCGAGCCAACACTTCTAATTACGTGTGATCAA : GTGGTGGTCTATGAAGGTGTGATCAGGGAAAAACCATCCAGTGAAGCAGAAGCACGTCAGTTCATGAAAG : ATTACGCCAATGGACATGCAGCAACCGTGAGTTCTGTTCTTGTCACGAACCTGACAACAGGAAGCAGAAGAGGAGAGTGGGACAAAGTCGAG : ATTTATTTCCACGACATACCAGATCAAGTCATAGATAAACTG : ATTGAGGAAGGGATAGTTCTTTATGCAGCTGGTGGCTTGATAATTGAACATCCTCTCGTTTTGCCTTATATTAAGGAAGTG : GTTGGCTCGACTGATAGCGTGATGGGTCTCCCAAAAGCTCTCACCGAAAGACTTATAAAGGAGGTTCTTTAGTATGACTATGATCCTGCTCCTACCTGAATGAGTTCGCGATCTATAATTTTGATATACGCTATTGGAGCTGAAATTATCATTGATTGTTCGCACTGGATGT</gDNA_template>
            <first_frame> S  *  K  T  G  R  G  N  *  P  I  S  N  S  N  I  S  L  C  K  I  L  S  N  R  T  A  A  L  I  R  S  L  S  G  E  K  M  E  A  N  A  P  Q  F  K  :  L  I  L  G  S  S  S  T  A  R  K  K  I  L  G  D  M  G  Y  E  F  T  T  M  :  S  A  D  I  D  E  K  A  I  R  K  E  K  P  E  D  L  V  M  A  L  A  E  A  K  :  A  E  A  I  I  P  R  V  S  I  G  E  S  E  G  D  A  E  P  T  L  L  I  T  C  D  Q  :  V  V  V  Y  E  G  V  I  R  E  K  P  S  S  E  A  E  A  R  Q  F  M  K   : D  Y  A  N  G  H  A  A  T  V  S  S  V  L  V  T  N  L  T  T  G  S  R  R  G  E  W  D  K  V  E  :  I  Y  F  H  D  I  P  D  Q  V  I  D  K  L  :  I  E  E  G  I  V  L  Y  A  A  G  G  L  I  I  E  H  P  L  V  L  P  Y  I  K  E  V  :  V  G  S  T  D  S  V  M  G  L  P  K  A  L  T  E  R  L  I  K  E  V  L  *  Y  D  Y  D  P  A  P  T  *  M  S  S  R  S  I  I  L  I  Y  A  I  G  A  E  I  I  I  D  C  S  H  W  M  </first_frame>
            <second_frame>  R  K  K  R  V  G  A  I  D  P  F  Q  I  V  T  F  P  C  V  K  F  S  P  I  G  L  R  R  *  S  V  H  S  P  A  K  K  W  K  P  M  L  L  S  L  S :   *  F  W  V  H  P  L  L  L  G  K  R  F  *  A  T  W  D  T  S  S  Q  P  C :   L  Q  I  L  M  R  K  L  S  G  K  K  S  L  K  I  *  L  W  L  L  L  R  Q  R :   Q  K  P  S  Y  Q  G  F  Q  L  E  N  P  K  G  M  P  S  Q  H  F  *  L  R  V  I  K :   W  W  S  M  K  V  *  S  G  K  N  H  P  V  K  Q  K  H  V  S  S  *  K  :  I  T  P  M  D  M  Q  Q  P  *  V  L  F  L  S  R  T  *  Q  Q  E  A  E  E  E  S  G  T  K  S  R :   F  I  S  T  T  Y  Q  I  K  S  *  I  N  * :   L  R  K  G  *  F  F  M  Q  L  V  A  *  *  L  N  I  L  S  F  C  L  I  L  R  K  W :   L  A  R  L  I  A  *  W  V  S  Q  K  L  S  P  K  D  L  *  R  R  F  F  S  M  T  M  I  L  L  L  P  E  *  V  R  D  L  *  F  *  Y  T  L  L  E  L  K  L  S  L  I  V  R  T  G  C </second_frame>
            <third_frame>   V  K  N  G  S  G  Q  L  T  H  F  K  *  *  H  F  L  V  *  N  S  L  Q  S  D  C  G  V  N  P  F  T  L  R  R  K  N  G  S  Q  C  S  S  V  *   : A  N  F  G  F  I  L  Y  C  S  E  K  D  F  R  R  H  G  I  R  V  H  N  H   : V  C  R  Y  *  *  E  S  Y  P  E  R  K  A  *  R  F  S  Y  G  S  C  *  G  K   : G  R  S  H  H  T  K  G  F  N  W  R  I  R  R  G  C  R  A  N  T  S  N  Y  V  *  S   : S  G  G  L  *  R  C  D  Q  G  K  T  I  Q  *  S  R  S  T  S  V  H  E  R :   L  R  Q  W  T  C  S  N  R  E  F  C  S  C  H  E  P  D  N  R  K  Q  K  R  R  V  G  Q  S  R   : D  L  F  P  R  H  T  R  S  S  H  R  *  T   : D  *  G  R  D  S  S  L  C  S  W  W  L  D  N  *  T  S  S  R  F  A  L  Y  *  G  S   : G  W  L  D  *  *  R  D  G  S  P  K  S  S  H  R  K  T  Y  K  G  G  S  L  V  *  L  *  S  C  S  Y  L  N  E  F  A  I  Y  N  F  D  I  R  Y  W  S  *  N  Y  H  *  L  F  A  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69521" stop="69631"/>
                    <exon start="69741" stop="69812"/>
                    <exon start="70557" stop="70631"/>
                    <exon start="71831" stop="71911"/>
                    <exon start="72578" stop="72647"/>
                    <exon start="72723" stop="72814"/>
                    <exon start="73517" stop="73558"/>
                    <exon start="73650" stop="73730"/>
                    <exon start="73909" stop="73980"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PISNSNISLCKILSNRTAALIRSLSGEKMEANAPQFKLILGSSSTARKKILGDMGYEFTTMSADIDEKAIRKEKPEDLVMALAEAKAEAIIPRVSIGESEGDAEPTLLITCDQVVVYEGVIREKPSSEAEARQFMKDYANGHAATVSSVLVTNLTTGSRRGEWDKVEIYFHDIPDQVIDKLIEEGIVLYAAGGLIIEHPLVLPYIKEVVGSTDSVMGLPKALTERLIKEVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="81321" PGL_stop="79647"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81321" e_stop="81255"/>
            <exon e_start="80713" e_stop="80656"/>
            <exon e_start="80457" e_stop="80398"/>
            <exon e_start="80105" e_stop="80043"/>
            <exon e_start="79972" e_stop="79647"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.746" acc_prob="0.772" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81321" e_stop="81255" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.985">
            <gDNA_intron_boundary i_start="81254" i_stop="80714" i_length="541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80713" e_stop="80656" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="80655" i_stop="80458" i_length="198"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80457" e_stop="80398" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.746" acc_prob="0.772">
            <gDNA_intron_boundary i_start="80397" i_stop="80106" i_length="292"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80105" e_stop="80043" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80042" i_stop="79973" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79972" e_stop="79647" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81321" stop="81255"/>
              <exon start="80713" stop="80656"/>
              <exon start="80457" stop="80398"/>
              <exon start="80105" stop="80043"/>
              <exon start="79972" stop="79647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316089" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGTTATTGAGAATTCAGCGTGATCACATTGAAGATGAAATACACCATCTTAAGTGGTCTCTCAA : GTCTGAAGAAACTGATGATGCCAGCAAGGAGATGTTTTCGGAGCTTCACAAGCTGCAG : TCCAAAGGTGAGGAGGTCAGGCTCAGTCATCAGCAGGCACAACGAGAATGTCACCAAAAG : TTCCACAAGGTCTGGGGACAACTAATGAAGACTGGTTATCAGAATTCTCGTTTTGCACATCAG : GTGGAAAGATTTGCTTGCCTTTATACCAGTCAAGTCACAAACTTGAGCCTGTATTCCCCGGATAAGTACTATAGGCCTAGTGAGGATTTTATGCCTCATGAATTTGGTATCCTCTCTATTTGAGGGGATCTTGTAATCCAGGGGCCAAAGGCAGTGCATTTTGAAGAAGAGCTTTGCTCATTCTAATTTACATTCCGAGTTACCAACATGGAAAATCTTTATGTTTTGTGGTATAATAACTTAAATTGTATCATATTTGTTTGTGCTGTCTCATATATGCACTTATCTGATTGTGAATTTGAATTATATAAAACAACTAGAATGGT</gDNA_template>
            <first_frame> F  S  Y  *  E  F  S  V  I  T  L  K  M  K  Y  T  I  L  S  G  L  S   : S  L  K  K  L  M  M  P  A  R  R  C  F  R  S  F  T  S  C  S :   P  K  V  R  R  S  G  S  V  I  S  R  H  N  E  N  V  T  K  S :   S  T  R  S  G  D  N  *  *  R  L  V  I  R  I  L  V  L  H  I  R :   W  K  D  L  L  A  F  I  P  V  K  S  Q  T  *  A  C  I  P  R  I  S  T  I  G  L  V  R  I  L  C  L  M  N  L  V  S  S  L  F  E  G  I  L  *  S  R  G  Q  R  Q  C  I  L  K  K  S  F  A  H  S  N  L  H  S  E  L  P  T  W  K  I  F  M  F  C  G  I  I  T  *  I  V  S  Y  L  F  V  L  S  H  I  C  T  Y  L  I  V  N  L  N  Y  I  K  Q  L  E  W  </first_frame>
            <second_frame>  S  V  I  E  N  S  A  *  S  H  *  R  *  N  T  P  S  *  V  V  S  Q  :  V  *  R  N  *  *  C  Q  Q  G  D  V  F  G  A  S  Q  A  A   : V  Q  R  *  G  G  Q  A  Q  S  S  A  G  T  T  R  M  S  P  K   : V  P  Q  G  L  G  T  T  N  E  D  W  L  S  E  F  S  F  C  T  S   : G  G  K  I  C  L  P  L  Y  Q  S  S  H  K  L  E  P  V  F  P  G  *  V  L  *  A  *  *  G  F  Y  A  S  *  I  W  Y  P  L  Y  L  R  G  S  C  N  P  G  A  K  G  S  A  F  *  R  R  A  L  L  I  L  I  Y  I  P  S  Y  Q  H  G  K  S  L  C  F  V  V  *  *  L  K  L  Y  H  I  C  L  C  C  L  I  Y  A  L  I  *  L  *  I  *  I  I  *  N  N  *  N  G </second_frame>
            <third_frame>   Q  L  L  R  I  Q  R  D  H  I  E  D  E  I  H  H  L  K  W  S  L  K :   S  E  E  T  D  D  A  S  K  E  M  F  S  E  L  H  K  L  Q  :  S  K  G  E  E  V  R  L  S  H  Q  Q  A  Q  R  E  C  H  Q  K  :  F  H  K  V  W  G  Q  L  M  K  T  G  Y  Q  N  S  R  F  A  H  Q  :  V  E  R  F  A  C  L  Y  T  S  Q  V  T  N  L  S  L  Y  S  P  D  K  Y  Y  R  P  S  E  D  F  M  P  H  E  F  G  I  L  S  I  *  G  D  L  V  I  Q  G  P  K  A  V  H  F  E  E  E  L  C  S  F  *  F  T  F  R  V  T  N  M  E  N  L  Y  V  L  W  Y  N  N  L  N  C  I  I  F  V  C  A  V  S  Y  M  H  L  S  D  C  E  F  E  L  Y  K  T  T  R  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81319" stop="81255"/>
                    <exon start="80713" stop="80656"/>
                    <exon start="80457" stop="80398"/>
                    <exon start="80105" stop="80043"/>
                    <exon start="79972" stop="79850"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLLRIQRDHIEDEIHHLKWSLKSEETDDASKEMFSELHKLQSKGEEVRLSHQQAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVTNLSLYSPDKYYRPSEDFMPHEFGILSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 78 chains have been computed
$ 
$ memory statistics:
$ 146656 bytes spliced alignments in total
$ 72 spliced alignments have been stored
$ 2036 bytes was the average size of a spliced alignment
$ 24048 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1603 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 88 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 04:27:54
-->
