<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-10 05:42:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0178J08-F3hqF/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-oycFak/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oycFak/sgn_marker_seqs" ref_id="SGN-M1577" ref_strand="+" ref_description="SGN-M1577 T0739 [cos_markers]">
      <seq>gatgatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-F3hqF/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8280" stop="4954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7980" g_stop="7765" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7638" g_stop="7555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="300" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7255" g_stop="7204" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="352" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5608" g_stop="5452" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="509" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5301" g_stop="5254" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="557" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-M1577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7980" e_stop="7765"/>
          <exon e_start="7638" e_stop="7555"/>
          <exon e_start="7255" e_stop="7204"/>
          <exon e_start="5608" e_stop="5452"/>
          <exon e_start="5301" e_stop="5254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATG</genome_strand>
        <mrna_strand>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oycFak/sgn_marker_seqs" ref_id="SGN-M7535" ref_strand="+" ref_description="SGN-M7535 C2_At2g45730 [cosii_markers]">
      <seq>cttcatctaatgcttaaagattgaatttttagcagcaaaaatgtctattgaagaagcagttgatgaggattcgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccattcgggtctctgtttcaagtggagccgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaacggccttgaagaaaaagacgtggatggatctaaagacaaccgtgcgcttgttgataataatactgctcagagtctcactagtgaagatattgacgagatgcgaaagcagggagcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagataagtatagggttaagaaacagaagaaatatgcacctcgagtacttttgaggcgcccctttgcacgaagcatttgtgaggcctacttcaagaaacatcctgaaaaaatcggattcatgcgagtggatgcactatctctactgctctccttggggaatgttactgctaatgcagatgtacttgtagtggacatgctcagtggtattcttactggtgctattgcagaacgacttggaggtactggttatgtgtgcaatacttatcgtggatcatcaccatatcctgtcgatatcacaaggatgtttaatttaagcgatgaaatctgtaaaagaatcgtgcatgcatcactgaccgacctgaattcatttcaaactggagcttcagtgtctgagggtcaggaagaaaccttacctgtcactcattctggtggtctagacgaagttagtgtgccagctgaagatggtggcatggatgtaacacctgagagagtttcttctccaataatcaagcctgttaaatctataaaagcaggtcagaaagcaaccctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-F3hqF/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="33341" stop="28499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33041" g_stop="32868" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32867" i_stop="32714" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32713" g_stop="32586" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="302" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32585" i_stop="31577" i_length="1009">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31576" g_stop="31468" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="411" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31467" i_stop="31030" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31029" g_stop="30948" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="493" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30947" i_stop="30878" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30877" g_stop="30807" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="564" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30806" i_stop="30130" i_length="677">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30129" g_stop="30088" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="606" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30087" i_stop="29806" i_length="282">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29805" g_stop="29681" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="731" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29680" i_stop="29378" i_length="303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29377" g_stop="29284" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="825" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29283" i_stop="29130" i_length="154">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29129" g_stop="29063" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="892" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="29062" i_stop="28951" i_length="112">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="28950" g_stop="28799" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="893" r_stop="1044" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-M7535" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1044</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33041" e_stop="32868"/>
          <exon e_start="32713" e_stop="32586"/>
          <exon e_start="31576" e_stop="31468"/>
          <exon e_start="31029" e_stop="30948"/>
          <exon e_start="30877" e_stop="30807"/>
          <exon e_start="30129" e_stop="30088"/>
          <exon e_start="29805" e_stop="29681"/>
          <exon e_start="29377" e_stop="29284"/>
          <exon e_start="29129" e_stop="29063"/>
          <exon e_start="28950" e_stop="28799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAGGTACACTCCTGTCTTTAAATCTCCTTTAGTTATTCTGGAGATAGACGTACTACTTCCTGATTTTTCCTTCATTTATAACTTAATCTTTGGAGAAGGGGAAGGTAGAACGAGATTGGATAATGTTTTCACTGCATTTCTTTGATATAGCTTAGTAAATAAAACTCTAAGATTGGTAATGTAATCAAAATTAAACAAGTTACTTTCATATGCTGCAAAATGTTGCACGTTCGCCCCAGGTGGAAGAAGGCAGTATTTCTTATTTGAGCAATGATCCAGTAACTGTCTATTTGTTGTAACTAGATTATACCACTTCATTCATGTGGAACACTCAGTTTTTCTGTGGATGAGTATGTCCTCGTATTGCTTTTTGATTAGTAAAGCATTTTAGGGCTTGTGGATTGTGTTTCACTTTTTATGATTTTCTTTTTTTAATTCAGGTGATAAGTAAAACATATAATGGTAGTTTTTCATTAATTTCTTCTAAGCACTATTGTTCTTCAAATCATATAATTGATTGTTCTGCATTTAATTTCTGAACTTGAAATCCCCAAGCTATTAGTGGTGATGTCAGATGTAGATAGTCGTAATACTACATTTGGTTTCTAGTTGCAAATCCCATAGTCGTTATCTTCCTCAATCTTTTCTTTAATTTCTAACATACCTCTTGCATTTTTCAGCATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGGGTAATAATATGGTCTTTTCTTGTGTTTGATCAAATATCTTCATCTGTTGTTTCTGGTTATGATTTGTCTTTTTGATGGGAGGGAAAGAAGGATAGACATTGATAACTTATTTTAGCATCAGAAAATCTTGAAATCTGATATATCCTCCTTGATGTTATTTTTCTTTGTGGTTCAGATGCTCACTGTAGTCTAATAACCCAAAGTTTCATATCTTATTCATTTTGCTTTGCATGATTCTGGGTTTACATGGGGGTTGATTTTATATCCTCTTGATTCCATCAGATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAGGTATGTATTTGTTCTTAACTGTAGTTACATTAAGGAAATCAAGGGATATTTGTGAATTGTGACCATTGCTTTATACACATAAAATTTGATCATGCAGCCTATACTAATGGGAAATTGTATCATGTCTGTGGATTATTGCTACTGATACTGATCGTATGTTTGTCATCATGATGTGAACGGCGCTGATGCTTATAGTTGTGAAACCATGTCGAACATGTTATAGACTTATAGTATTGTTAAAGAGTGTTAATTGCTATTTAAGTTAATGACTTTTTAATATTTTCATGACAATGATATTAGCAGGTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAGGTACACTTCCTTTTGCAATGAAATAGAAAAATTACCCAATTAGTGCACAGAGAAAAAAATTGTATATTTCAGTGGATAGCTTTTGTCTAAACTCTAAATATGTTTTACTGCATTCGTACTAACTATAAACTTTGCTGTTTGTGTATGTATCTAGAATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAGGTAAAACCATGTTGTAATGTCAAAAGTTGATCCTTTTTTGGTGTAAATTGTTTCTTCTGTAAATGCGTGCGTGGATGACTTTTAAACTTCTCTCTAAAACATGTTCCTGCAGGAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGA</genome_strand>
        <mrna_strand>CTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG..........................................................................................................................................................................................................................................................................................ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCTAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAG...............................................................................................................................................................................................................................................................................................................GTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAG..........................................................................................................................................................AATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAG................................................................................................................GAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oycFak/sgn_marker_seqs" ref_id="SGN-M7535-2" ref_strand="+" ref_description="SGN-M7535-2 C2_At2g45730-2 [cosii_markers]">
      <seq>tgaaaaagcagttgatgaggatttgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccatttgggtctctgtttcaagtggagtcgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaatggccttgaagaaaaagatgtggatggatctaaagacaaccgtgcacttgttgataataatactgctcagagtctcactagtgaagatatcgacgagatgcgaaatcagggggcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagaaaagtatagggttaagaaacagaagaaatatgcacctcgagtactaattgangcgtccctttgcacgaagcatttgtgaggcctacttcaagaaacatcctgaaaaaatcggattcatgcgagtggattcactatctctactactctgcttggggaatgttactgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-F3hqF/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="33293" stop="29450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32993" g_stop="32868" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32867" i_stop="32714" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32713" g_stop="32586" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="254" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32585" i_stop="31577" i_length="1009">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31576" g_stop="31468" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="363" r_length="109" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31467" i_stop="31030" i_length="438">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31029" g_stop="30948" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="445" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30947" i_stop="30878" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30877" g_stop="30807" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="517" r_length="72" r_score="0.915"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30806" i_stop="30130" i_length="677">
            <donor d_prob="0.974" d_score="0.90"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30129" g_stop="30088" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="559" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30087" i_stop="29806" i_length="282">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29805" g_stop="29750" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="615" r_length="56" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-M7535-2" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7535-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32993" e_stop="32868"/>
          <exon e_start="32713" e_stop="32586"/>
          <exon e_start="31576" e_stop="31468"/>
          <exon e_start="31029" e_stop="30948"/>
          <exon e_start="30877" e_stop="30807"/>
          <exon e_start="30129" e_stop="30088"/>
          <exon e_start="29805" e_stop="29750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACT-TTTGAGGCGCCCCTTTGCACGAAGGTACACTCCTGTCTTTAAATCTCCTTTAGTTATTCTGGAGATAGACGTACTACTTCCTGATTTTTCCTTCATTTATAACTTAATCTTTGGAGAAGGGGAAGGTAGAACGAGATTGGATAATGTTTTCACTGCATTTCTTTGATATAGCTTAGTAAATAAAACTCTAAGATTGGTAATGTAATCAAAATTAAACAAGTTACTTTCATATGCTGCAAAATGTTGCACGTTCGCCCCAGGTGGAAGAAGGCAGTATTTCTTATTTGAGCAATGATCCAGTAACTGTCTATTTGTTGTAACTAGATTATACCACTTCATTCATGTGGAACACTCAGTTTTTCTGTGGATGAGTATGTCCTCGTATTGCTTTTTGATTAGTAAAGCATTTTAGGGCTTGTGGATTGTGTTTCACTTTTTATGATTTTCTTTTTTTAATTCAGGTGATAAGTAAAACATATAATGGTAGTTTTTCATTAATTTCTTCTAAGCACTATTGTTCTTCAAATCATATAATTGATTGTTCTGCATTTAATTTCTGAACTTGAAATCCCCAAGCTATTAGTGGTGATGTCAGATGTAGATAGTCGTAATACTACATTTGGTTTCTAGTTGCAAATCCCATAGTCGTTATCTTCCTCAATCTTTTCTTTAATTTCTAACATACCTCTTGCATTTTTCAGCATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGGGTAATAATATGGTCTTTTCTTGTGTTTGATCAAATATCTTCATCTGTTGTTTCTGGTTATGATTTGTCTTTTTGATGGGAGGGAAAGAAGGATAGACATTGATAACTTATTTTAGCATCAGAAAATCTTGAAATCTGATATATCCTCCTTGATGTTATTTTTCTTTGTGGTTCAGATGCTCACTGTAGTCTAATAACCCAAAGTTTCATATCTTATTCATTTTGCTTTGCATGATTCTGGGTTTACATGGGGGTTGATTTTATATCCTCTTGATTCCATCAGATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAA</genome_strand>
        <mrna_strand>TGAAAAAGCAGTTGATGAGGATTTGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTTGGGTCTCTGTTTCAAGTGGAGTCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCCTTGAAGAAAAAGATGTGGATGGATCTAAAGACAACCGTGCACTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATCGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGGGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GAAAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTAATTGANGCGTCCCTTTGCACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG..........................................................................................................................................................................................................................................................................................ATTCATGCGAGTGGATTCACTATCTCTACTACTCTGCTTGGGGAATGTTACTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oycFak/sgn_marker_seqs" ref_id="SGN-M6816" ref_strand="+" ref_description="SGN-M6816 C2_At1g47830 [cosii_markers]">
      <seq>tctctggcacctcagttgtgaccctgagggctttttgctggtttttacaaattaaagaatcaaagagattttttcaattgtttctacagctgttttgcctgcagatcttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtactcacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaacgagttggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcatcgagagaatgggagagttggagaagcaggagtgaagaactccgatgctttgctcaagagtcaaaacaaacacttgccttttccttcatcacctgcacttctcttccggctggctgtatttactgcattagacattctgtatcccgttgataccttcatgttgatgtggcctcatttaatacaagatttgttcattcatacatttaaaggtagtttgcaagtttaaatatgaatgtctctatctattcccagtttaaatatgaatatctttatcttttgttaactccaaaaactatattgttgttggaagtaggaaaagggttatttcaatccgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaaaaaaaaacctcgaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-F3hqF/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="56661" stop="60470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56961" g_stop="57081" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57082" i_stop="57227" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57228" g_stop="57326" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="220" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57327" i_stop="57408" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57409" g_stop="57459" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="271" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57460" i_stop="58762" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58763" g_stop="58936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="445" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58937" i_stop="59238" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59239" g_stop="59298" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="505" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59299" i_stop="59826" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59827" g_stop="60169" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="848" r_length="343" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="850" polyA_stop="887"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-M6816" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56961" e_stop="57081"/>
          <exon e_start="57228" e_stop="57326"/>
          <exon e_start="57409" e_stop="57459"/>
          <exon e_start="58763" e_stop="58936"/>
          <exon e_start="59239" e_stop="59298"/>
          <exon e_start="59827" e_stop="60169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAGAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATACGAA</genome_strand>
        <mrna_strand>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAAAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oycFak/sgn_marker_seqs" ref_id="SGN-M6816-2" ref_strand="+" ref_description="SGN-M6816-2 C2_At1g47830-2 [cosii_markers]">
      <seq>ggtttttacaaattaaagaatcaaagagatttctccaacttttttcaattgtttctccagctattttgcctgcagatcttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggtccatcggttggtggtgaatagagatcccaaattcaccaactttgttgagttccgtacccacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaatgaattggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcattgagagaatgggagagttggagaagcaggagtgaagatttctgtgctttgctcaagagtcgaaacaaacactttccttttccttcatcatctgcacttctcttccggctggttgtatttactgcattagacattctgtatcctgttgataccttcatgttgatgcggcctcatttaatacaagatttgttcattcatacatttaaaggtagtttgcaagtttaaatatgaatgtctcttatcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-F3hqF/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="56729" stop="60381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57028" g_stop="57081" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="92" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57082" i_stop="57227" i_length="146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57228" g_stop="57326" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="191" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57327" i_stop="57408" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57409" g_stop="57459" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="242" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57460" i_stop="58762" i_length="1303">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.658" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58763" g_stop="58936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="416" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58937" i_stop="59238" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59239" g_stop="59298" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="476" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59299" i_stop="59826" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59827" g_stop="60081" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="731" r_length="255" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-M6816-2" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6816-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57028" e_stop="57081"/>
          <exon e_start="57228" e_stop="57326"/>
          <exon e_start="57409" e_stop="57459"/>
          <exon e_start="58763" e_stop="58936"/>
          <exon e_start="59239" e_stop="59298"/>
          <exon e_start="59827" e_stop="60081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTC-TATCTATTC</genome_strand>
        <mrna_strand>CTTTTTTCAATTGTTTCTCCAGCTATTTTGCCTGCAGATCTTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTCCATCGGTTGGTGGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACCCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAATGAATTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATTGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGATTTCTG-TGCTTTGCTCAAGAGTCGAAACAAACACTTTCCTTTTCCTTCATCATCTGCACTTCTCTTCCGGCTGGTTGTATTTACTGCATTAGACATTCTGTATCCTGTTGATACCTTCATGTTGATGCGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTTATCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oycFak/sgn_marker_seqs" ref_id="SGN-M7062" ref_strand="+" ref_description="SGN-M7062 C2_At1g75730 [cosii_markers]">
      <seq>aaacagagtaactgatcgttttcgtgtgaaatcttgagagaatcgggtaatcaaaaaccgaaagcttcggtttttccgtttgttaagcagaaatattctcagatagctaaatcgttactatttggattgtaagggaggaaatgaaataattgcgaagaaatcgaagaaagggggagaaagattgagtggtgctggtgaagtttagtccagtatgaacaacattgaaatgggttgtttaaagtctgatgataacgatgagattcattccaatgtttctgttcggaagcgatttaagtttcccaaaaagttttttgatgagtgtaatggagtagatcatgcttctgttcctcggaaagttcgttcagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcattgttgtggccaggcttgtctgcagcagggtcatcttgttccgacatacttgattcttcaccacagtttccaattggcaaatttcctgtctggatcgggagcgctggcactgatcatcaagctcaaaatgcaaaatcttgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-F3hqF/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="66007" stop="62352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65707" g_stop="65583" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65582" i_stop="64555" i_length="1028">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64554" g_stop="64373" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="307" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64372" i_stop="64293" i_length="80">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64292" g_stop="64235" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="365" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64234" i_stop="63857" i_length="378">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63856" g_stop="63735" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="487" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63601" g_stop="63394" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="695" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63308" g_stop="63130" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="874" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63129" i_stop="63055" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63054" g_stop="63000" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="929" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62999" i_stop="62877" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62876" g_stop="62807" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="930" r_stop="999" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="62806" i_stop="62731" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="62730" g_stop="62652" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1000" r_stop="1078" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-M7062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1078</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65707" e_stop="65583"/>
          <exon e_start="64554" e_stop="64373"/>
          <exon e_start="64292" e_stop="64235"/>
          <exon e_start="63856" e_stop="63735"/>
          <exon e_start="63601" e_stop="63394"/>
          <exon e_start="63308" e_stop="63130"/>
          <exon e_start="63054" e_stop="63000"/>
          <exon e_start="62876" e_stop="62807"/>
          <exon e_start="62730" e_stop="62652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGGGTAAATCAAAAATTTATTCTTTTTGTTTGTTTGTTTGTTCTTGTTCAGTTATGAGTTGTTGCAACAGATTGTAAGCTGGATTAATTTTTTTTTTCATGATTCTCTGTTGTTTGTTCATGGAAATGACTGAGTTTTTTGTTTTCTGCATTTTGAATTTTTGCGTTTTCGATCTGAAAGAGTGATGAGATTATGCTTTTTCTGAAGAAAATGTACGTTTGATCTATATAATCTGATATGTTGATCTGTTTTAATGGGGTTTTGTTGATGAATAGAGATGGTACTGTAATTTCTCTACATGGGGTTGATTTTTTTTAGGTACTTTGCGTGTGTGTTGTCTTTCTCTTTCTCTCTCTCTCTCTTTCTTTTTGGGGGTTGATGAGTACGAGTGTGACAGACTCACAGTGAGAGAGCGGCTTTATTATGTGAAGAAGAACCCGATTCGTTGTACATAAAGGACCAAATTCAGTTTTCTTCTTCTTCTTCCCTTTTTAACCATTTTTAGAGTTTTTAAATGTTAGTACTGTAAAACCCAAAAGCCTTTAATGTTTCTGTATCGGGTTTTTAGATTCACTACCAAAAGTTCTGAATTTTGGAGGTTCTTGTTTGATGATTAGAGAATTGATTGTAGCTGGGTCTGGAAAAAAAATTGTTTTCAATTCAATTTTGTTGCAGTATTTTTTTTCCAGAAATGGACAAGAATCGGTAATGCTTAAGTGTGAAAGTGAATTTTATTGTTTCGTCTTTGTATTAAAATCAAACGGTTACTAGACAACAAGACCCATCAATGCGTCTATTGTCTGTTTCTGCAAATATATTCTTATTCTTATTCATCTATATGTGGATTTTGGTGTTTGCGAGGTTGAGAAACGCGTGTCGTCTTGTATTCCTCCTTTTCTCCTCTCTTTTTTTCTTTTTTGGTTATCTGTTACAGTTCTTTATCCTTCTTTTTGTTTTGATTTTTCTTGTGATTTCTGCTTTCCACACAAAATTCTCTGATAATATTTCTGGGTTTTGCTTTGAATGCTTAGATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAGGTTTGATATTTTAGCTCAATTAAGTATATTGTAAATAGGTATTGGTCTGTTAAATTCATTAACCCCTTTTGGATTTGCAGTTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAGGTTTGTATTTTTGTGAATCAAATTTGGAAATTACTGACTTGCTTATGTTTGTTATCTTATTTGGAATAGTTATGTGTTAGTTGGAGCCCAGTGCTTGGAAGTGGGTCACTTGTTGCTTTATTTTGTAAATTATAGTAAATTCCTTTTCACCTTTTCTTTCTTTTTAAGCATGAGAAGATTCTGTAAGTTTCTTCGTCTTATTTCGCTTTTTAAACCTTTGGAATCATTAAAAAGTACTTAATCTGCAATTTGGGTGATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACAGTAAGTTCCCATTTCTTACCGCACTCTTCCTTGCCTACAAATATTGTTTGGTTTCTCATGCACCGAGTAATGATAGGTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTA</genome_strand>
        <mrna_strand>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG................................................................................TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA............................................................................GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oycFak/sgn_marker_seqs" ref_id="SGN-M8346-2" ref_strand="+" ref_description="SGN-M8346-2 C2_At4g24190-2 [cosii_markers]">
      <seq>ctctactttgaacgctgcttgtaaaattatcggccggcgagctctaaagttgaaattccggtgacggagacaatgaggaagtggacgatcccgttcgtcctgtttctgttgtgcctgatttttcttgttccagatcaaggtcgaaagatacaggcaaatgcagaagctgattctgatgcaccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaaaagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcggcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaagttcttggtgaaggtgataacactaagcttgagattcagattaaactcgataaagaaaagaaaattctttccattcgtgacagaggtgttggaatgactaaggaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagcttttgtcgagaagatgcagacaagtggtgaccttaacctgattggacaatttggtgtcgggttttactctgtgtatcttgtggctgactatgttgaagtcatcagcaagcacaatgacgataaacaatatgtctgggaatcaaaggctgatggggcatttgccatttctgaagatacatggaatgaacctcttggtcgtggaactgaaattagactgcatctaagagatgaagcaggtgaatatttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggcaagcaaagaggttgagaaggaagttcctgctgacgaggacgagtcaattgatgaagaggaaacatctgaaagcagttcttctgaggaagagggagaagaagaagatgcagagaaggctgaagatgagaaaaagcctaaaactaagacagtgaaggaaaccacatatgagtgggagcttttaaatgacatgaaagctatatggcttcgaagcccaaaggaagtgacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatccctcctaaagcccctcatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccggatgaaactaatgacaaggagaagagagatgttgaagagtccagtgaggaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgataaagcttggtattatagaagatgcaactaacagaaaccgcttagctaaacttctccgatttgagaccaccaaatcagatggtaaattaacttcactagaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcactggagccagcaaagaacagttggagaaatctcccttccttgaaaggcttaataagaaagactatgaggtcatattcttcaccgatcccgtagatgaatacctcatgcaatatcttatggactatgaggacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagactactcttgctagtgacaacgttgaagatgtcaagataagcaaccgtttggccgacaccccttgtgtagtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaggcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggatgagagtgtgaagctgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatcttagtgatccgaaggattttgcctcccacatctacagctcagttaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagatgaagctgaagaacctgagattgaaaccaaggcagaagaggagtctgcatccgaagagtctgaactcaaggatgagctatagataatgtcctaagatatgttcctttttcccggaaacaacacgttgttgtgctatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtttaaacttaaagaattttgtcagtcttgcattatccttgttttagtgtatgagtttgtcggtccgtgtaacaaatctggaaggtcttgtttttcctaattggaactggtaaaagctctagttttctaagaaaaccaacttttaacgtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-F3hqF/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97456" stop="91425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97156" g_stop="97018" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="260" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="414" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="495" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="607" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95701" g_stop="95575" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="734" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95490" g_stop="95352" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="873" r_length="139" r_score="0.978"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94610" g_stop="94493" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="991" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="94201" g_stop="94002" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="992" r_stop="1191" r_length="200" r_score="0.975"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="93898" g_stop="93683" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1192" r_stop="1407" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1408" r_stop="1573" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1574" r_stop="1715" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1716" r_stop="1866" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.672" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="92711" g_stop="92310" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1867" r_stop="2268" r_length="402" r_score="0.983"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="92224" g_stop="91732" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="2269" r_stop="2756" r_length="488" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2760" polyA_stop="2769"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-M8346-2" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>2761</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8346-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97156" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95575"/>
          <exon e_start="95490" e_stop="95352"/>
          <exon e_start="94610" e_stop="94493"/>
          <exon e_start="94201" e_stop="94002"/>
          <exon e_start="93898" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92310"/>
          <exon e_start="92224" e_stop="91732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACTTTGAACGCTGCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACATGTATGTATGATTCTCCTATCTTGACTTGCCAAGTATTGTTTGTGTTATTTATAAAAGAAGTGTTGTTTCAGAGTTAATCTCAGTCTGAATGTAGTATACTTGTTGAATGAGCTATTCCATCCTTCTTTTTCTTTCTGTATGGAGAAGAGTGGGGCGAGGACTGGTGAAAACTGACAAAGTAAACATAATAAGAGTAGGAAAGGAAGAAGAAAAGTCTGCTGCCTCATTTCCCATCTTCTTTACCTTTTCTTCTCTGTCAGTGGTCTTATCGTCTGTCAATGTTGTGAACAGCTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGT</genome_strand>
        <mrna_strand>CTCTACTTTGAACGCTGCTTGTAAAATTATCGGCCGGCGAGCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGACGATCCCGTTCGTCCTGTTTCTGTTGTGCCTGATTTTTCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAAAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGGCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAAGTTCTTGGTGAAGGTGATAACACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTCGATAAAGAAAAGAAAATTCTTTCCATTCGTGACAGAGGTGTTGGAATGACTAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTCGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGATAAACA....................................................................................ATATGTCTGGGAATCAAAGGCTGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGTCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGTGAATATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGACGAGGACGAGTCAATTGATGAAGAGGAAACAT...................................................................................................................................................................................................................................................................................................CTGAAAGCAGTTCTTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCTGAAGATGAGAAAAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTGACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCGGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGAGGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATAAAGCTTGGTATTATAGAAGATGCAACTAACAGAAACCGCTTAGCTAAACTTCTCCGATTTGAGAC.......................................................................................CACCAAATCAGATGGTAAATTAACTTCACTAGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACTGGAGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGGCTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTCATATTCTTCACCGATCCCGTAGATGAATACCTCATGCAATATCTTATGGACTATGAGGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGACTACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAACCGTTTGGCCGACACCCCTTGTGTAGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAGGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GATGAGAGTGTGAAGCTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTTAGTGATCCGAAGGATTTTGCCTCCCACATCTACAGCTCAGTTAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGATGAAGCTGAAGAACCTGAGATTGAAACCAAGGCAGAAGAGGAGTCTGCATCCGAAGAGTCTGAACTCAAGGATGAGCTATAGATAATGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGCTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGT-TTAAACTT--AAAGAATTTTGTCAGTCTTGCATTATCCTTGTTTTAGTGTATGAGTTTGTCGGTCCGTGTAACAAATCTGGAAGGTCTTG-TTTTTCCTAATTGGAACTGGTAAAAGCTCTAG-TTTTCTAAGAAAACCAACTTTTAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oycFak/sgn_marker_seqs" ref_id="SGN-M8346" ref_strand="+" ref_description="SGN-M8346 C2_At4g24190 [cosii_markers]">
      <seq>aacactctactttgaacgctgcttgtaaaatcatcggccggcgacctctaaagttgaaattccggtgacggagacaatgaggaagtggaagatcccgttcgtcctgtttctgttatgcctgatttaccttgttccagatcaaggtcgaaagatacaggcaaatgcagaagctgattctgatgcaccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaagagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcgtcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttccaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaggttcttggtgagggtgataatactaagcttgagattcagattaaacttgataaagaaaagaaaattctttccattcgcgacagaggtgttggaatgaccaaggaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagcttttgtcgagaagatgcagacaagtggtgaccttaacctgattggacaatttggtgttgggttttactctgtgtatcttgtggctgactatgttgaagtcatcagcaagcacaatgacgacaaacaatatgtctgggaatcaaaggcagatggggcatttgccatttctgaagatacatggaatgaacctcttggccgtggaactgaaattagactgcatctaagagatgaagcaggggaatatttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggcaagcaaagaggttgagaaggaagttcctgctgatgaggacgagtcagttgatgaagaggaaacatctgaaagcacttcctctgaggaagagggagaagaagaagatgcagagaaggccgaagatgagaagaagcctaaaactaagacagtgaaggaaaccacatatgagtgggagcttttaaatgacatgaaagctatatggcttcgaagcccaaaggaagttacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatccctcctaaagcccctcatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccagatgaaactaatgacaaggagaagagagatgttgaagagtccagtgatgaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgattaagcttggtattatagaagacgcaactaacagaaaccgcttagctaaacttcttcgatttgagacaaccaaatcagatggtaaattaacttcacttgaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttccttgaaagacttaataagaaagactatgaggttatattcttcaccgatccagtagatgaatacctcatgcaatatcttatggactatgaagacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagaatactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagttgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagtaaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggatgagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaaatctggaaggtcttgttttttcctaattggaactggtaaaagctctagtttttctaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacttgggggggggggccccccccccccccccccccaaggggggggttaaaaaatttcggggggcggtttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-F3hqF/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97460" stop="91442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97160" g_stop="97018" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="264" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="418" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="499" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="611" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95701" g_stop="95575" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="738" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95490" g_stop="95352" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="877" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94610" g_stop="94493" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="995" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="94201" g_stop="94002" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="996" r_stop="1195" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="93898" g_stop="93683" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1196" r_stop="1411" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1412" r_stop="1577" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1578" r_stop="1719" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1720" r_stop="1870" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="92711" g_stop="92310" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1871" r_stop="2272" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="92224" g_stop="91747" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="2273" r_stop="2750" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-M8346" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2750</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97160" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95575"/>
          <exon e_start="95490" e_stop="95352"/>
          <exon e_start="94610" e_stop="94493"/>
          <exon e_start="94201" e_stop="94002"/>
          <exon e_start="93898" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92310"/>
          <exon e_start="92224" e_stop="91747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTCTACTTTGAACGCTGCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACATGTATGTATGATTCTCCTATCTTGACTTGCCAAGTATTGTTTGTGTTATTTATAAAAGAAGTGTTGTTTCAGAGTTAATCTCAGTCTGAATGTAGTATACTTGTTGAATGAGCTATTCCATCCTTCTTTTTCTTTCTGTATGGAGAAGAGTGGGGCGAGGACTGGTGAAAACTGACAAAGTAAACATAATAAGAGTAGGAAAGGAAGAAGAAAAGTCTGCTGCCTCATTTCCCATCTTCTTTACCTTTTCTTCTCTGTCAGTGGTCTTATCGTCTGTCAATGTTGTGAACAGCTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAA</genome_strand>
        <mrna_strand>AACACTCTACTTTGAACGCTGCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACA....................................................................................ATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACAT...................................................................................................................................................................................................................................................................................................CTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC.......................................................................................AACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oycFak/sgn_marker_seqs" ref_id="SGN-M1418" ref_strand="+" ref_description="SGN-M1418 T0360 [cos_markers]">
      <seq>ccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaagagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcgtcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttccaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaggttcttggtgagggtgataatactaagcttgagattcagattaaacttgataaagaaaagaaaattctttccattcgcgacagaggtgttggaatgaccaaggaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagcttttgtcgagaagatgcagacaagtggtgaccttaacctgattggacaatttggtgttgggttttactctgtgtatcttgtggctgactatgttgaagtcatcagcaagcacaatgacgactaacaatatgtctgggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-F3hqF/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="96780" stop="95263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96480" g_stop="96401" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="234" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="315" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="427" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95701" g_stop="95575" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="554" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95490" g_stop="95476" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="569" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-M1418" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96480" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95575"/>
          <exon e_start="95490" e_stop="95476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATC</genome_strand>
        <mrna_strand>CCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACTAACA....................................................................................ATATGTCTGGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7980" PGL_stop="5254"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7980" e_stop="7765"/>
            <exon e_start="7638" e_stop="7555"/>
            <exon e_start="7255" e_stop="7204"/>
            <exon e_start="5608" e_stop="5452"/>
            <exon e_start="5301" e_stop="5254"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.648" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7980" e_stop="7765" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7638" e_stop="7555" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7255" e_stop="7204" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.945">
            <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5608" e_stop="5452" e_length="157"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.648">
            <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5301" e_stop="5254" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7980" stop="7765"/>
              <exon start="7638" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5452"/>
              <exon start="5301" stop="5254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG : GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT : GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC : AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG : GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATG</gDNA_template>
            <first_frame> D  D  S  K  I  H  S  *  T  K  H  *  K  K  R  E  E  M  L  T  A  P  S  L  S  R  F  K  S  P  F  I  S  S  P  L  K  L  P  T  L  S  S  S  F  F  T  Q  K  F  H  Q  T  C  R  R  R  N  S  Y  P  C  I  K  A  V  D  L  D  Q  N  T  :  V  I  A  I  T  V  G  V  L  S  V  A  I  G  V  G  I  P  V  F  Y  E  T  Q  I  D  N  A  :  A  K  R  E  N  T  Q  P  C  F  P  C  T  G  T  G  A   : Q  K  C  R  F  C  M  G  T  G  S  V  T  V  E  L  G  G  G  E  T  E  V  S  R  C  I  N  C  D  G  A  G  G  L  T  C  T  T  C  Q  G  S  G  I  Q  P  R  Y  L  D  R  R :   E  F  K  D  D  D  *  I  W  K  N  T  Q  H  G   </first_frame>
            <second_frame>  M  I  A  K  S  I  A  K  L  N  I  E  R  K  G  R  K  C  *  Q  H  L  H  F  P  A  L  S  L  H  L  S  A  H  L  L  S  F  L  L  F  L  L  L  F  S  L  R  N  F  I  K  H  V  V  G  E  I  R  T  H  V  L  K  L  W  I  L  I  K  T  R :   *  *  Q  L  Q  L  G  C  S  V  L  L  L  E  L  E  F  Q  F  F  M  R  P  K  L  I  M  L :   Q  K  E  R  T  L  S  P  A  S  P  A  L  A  L  V  L  :  R  N  A  D  F  A  W  V  L  A  V  *  R  W  S  L  E  G  V  R  Q  K  S  L  G  A  S  I  V  T  V  L  V  V  *  L  A  Q  H  V  K  A  V  A  F  N  L  G  T  L  I  A   : G  N  S  R  T  M  I  R  Y  G  R  I  L  S  M  D  </second_frame>
            <third_frame>   *  *  Q  N  P  *  L  N  *  T  L  K  E  K  G  G  N  V  N  S  T  F  T  F  P  L  *  V  S  I  Y  Q  L  T  S  *  A  S  Y  S  F  F  F  F  F  H  S  E  I  S  S  N  M  S  *  A  K  F  V  P  M  Y  *  S  C  G  S  *  S  K  H   : G  D  S  N  Y  S  W  G  A  Q  C  C  Y  W  S  W  N  S  S  F  L  *  D  P  N  *  *  C   : C  K  K  R  E  H  S  A  L  L  P  L  H  W  H  W  C  S :   E  M  Q  I  L  H  G  Y  W  Q  C  D  G  G  A  W  R  G  *  D  R  S  L  S  V  H  Q  L  *  R  C  W  W  F  D  L  H  N  M  S  R  Q  W  H  S  T  S  V  P  *  S  Q  :  G  I  Q  G  R  *  L  D  M  E  E  Y  S  A  W  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7944" stop="7765"/>
                    <exon start="7638" stop="7555"/>
                    <exon start="7255" stop="7204"/>
                    <exon start="5608" stop="5452"/>
                    <exon start="5301" stop="5280"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKREEMLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNSYPCIKAVDLDQNTVIAITVGVLSVAIGVGIPVFYETQIDNAAKRENTQPCFPCTGTGAQKCRFCMGTGSVTVELGGGETEVSRCINCDGAGGLTCTTCQGSGIQPRYLDRREFKDDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="33041" PGL_stop="28799"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33041" e_stop="32868"/>
            <exon e_start="32713" e_stop="32586"/>
            <exon e_start="31576" e_stop="31468"/>
            <exon e_start="31029" e_stop="30948"/>
            <exon e_start="30877" e_stop="30807"/>
            <exon e_start="30129" e_stop="30088"/>
            <exon e_start="29805" e_stop="29681"/>
            <exon e_start="29377" e_stop="29284"/>
            <exon e_start="29129" e_stop="29063"/>
            <exon e_start="28950" e_stop="28799"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="0.992"/>
          <exon-intron don_prob="0.875" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.729" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33041" e_stop="32868" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="32867" i_stop="32714" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32713" e_stop="32586" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32585" i_stop="31577" i_length="1009"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31576" e_stop="31468" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31467" i_stop="31030" i_length="438"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31029" e_stop="30948" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.615" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30947" i_stop="30878" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30877" e_stop="30807" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.976">
            <gDNA_intron_boundary i_start="30806" i_stop="30130" i_length="677"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30129" e_stop="30088" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.917">
            <gDNA_intron_boundary i_start="30087" i_stop="29806" i_length="282"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="29805" e_stop="29681" e_length="125"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="29680" i_stop="29378" i_length="303"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29377" e_stop="29284" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.875" acc_prob="0.990">
            <gDNA_intron_boundary i_start="29283" i_stop="29130" i_length="154"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29129" e_stop="29063" e_length="67"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.729">
            <gDNA_intron_boundary i_start="29062" i_stop="28951" i_length="112"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="28950" e_stop="28799" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33041" stop="32868"/>
              <exon start="32713" stop="32586"/>
              <exon start="31576" stop="31468"/>
              <exon start="31029" stop="30948"/>
              <exon start="30877" stop="30807"/>
              <exon start="30129" stop="30088"/>
              <exon start="29805" stop="29681"/>
              <exon start="29377" stop="29284"/>
              <exon start="29129" stop="29063"/>
              <exon start="28950" stop="28799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32993" stop="32868"/>
              <exon start="32713" stop="32586"/>
              <exon start="31576" stop="31468"/>
              <exon start="31029" stop="30948"/>
              <exon start="30877" stop="30807"/>
              <exon start="30129" stop="30088"/>
              <exon start="29805" stop="29750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7535-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC : GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG : GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA : GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA : GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAG : CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG : ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAG : GTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAG : AATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAG : GAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGA</gDNA_template>
            <first_frame> L  H  L  M  L  K  D  *  I  F  S  S  K  N  V  Y  *  R  S  S  *  *  G  F  E  A  K  S  *  *  *  I  N  L  *  R  L  Q  C  I  A  *  H  Q  *  W  R  P  F  S  F  F  S  S  Y  C  C  L  :  D  I  E  N  W  E  *  E  V  F  S  S  A  S  Y  R  L  S  I  R  V  S  V  S  S  G  A  G  K  R  R  N  L  F  D  S  F  C  *  E  C  R  R :   *  R  P  *  R  K  R  R  G  W  I  *  R  Q  P  C  A  C  *  *  *  Y  C  S  E  S  H  *  *  R  Y  *  R  D  A  K  :  A  G  S  K  R  G  *  N  S  *  S  T  H  C  K  Q  C  N  F  *  E  E  D  I  I  F  T   : R  *  V  *  G  *  E  T  E  E  I  C  T  S  S  T  F  E  A  P  L  C  T  K  :  H  L  *  G  L  L  Q  E  T  S  *  K  N  R  :  I  H  A  S  G  C  T  I  S  T  A  L  L  G  E  C  Y  C  K  C  R  C  T  C  S  G  H  A  Q  W  Y  S  Y  W  C  Y  C  R  T  T  W  R :   Y  W  L  C  V  Q  Y  L  S  W  I  I  T  I  S  C  R  Y  H  K  D  V  *  F  K  R  *  N  L  *  K  :  N  R  A  C  I  T  D  R  P  E  F  I  S  N  W  S  F  S  V  *  G  S   : G  R  N  L  T  C  H  S  F  W  W  S  R  R  S  *  C  A  S  *  R  W  W  H  G  C  N  T  *  E  S  F  F  S  N  N  Q  A  C  *  I  Y  K  S  R  S  E  S  N  P  R </first_frame>
            <second_frame>  F  I  *  C  L  K  I  E  F  L  A  A  K  M  S  I  E  E  A  V  D  E  D  S  K  Q  N  H  N  S  R  L  T  Y  E  G  C  N  V  L  L  D  I  N  D  G  D  R  L  V  F  S  R  L  T  A  A  S :   T  L  K  I  G  N  K  K  C  S  L  Q  P  L  I  G  C  P  F  G  S  L  F  Q  V  E  P  G  K  E  G  T  F  L  T  R  F  V  E  N  A  E   : G  N  G  L  E  E  K  D  V  D  G  S  K  D  N  R  A  L  V  D  N  N  T  A  Q  S  L  T  S  E  D  I  D  E  M  R  K :   Q  G  A  K  G  D  E  I  V  E  A  L  I  A  N  S  A  T  F  E  K  K  T  L  F  S  Q  :  D  K  Y  R  V  K  K  Q  K  K  Y  A  P  R  V  L  L  R  R  P  F  A  R  S :   I  C  E  A  Y  F  K  K  H  P  E  K  I  G :   F  M  R  V  D  A  L  S  L  L  L  S  L  G  N  V  T  A  N  A  D  V  L  V  V  D  M  L  S  G  I  L  T  G  A  I  A  E  R  L  G   : G  T  G  Y  V  C  N  T  Y  R  G  S  S  P  Y  P  V  D  I  T  R  M  F  N  L  S  D  E  I  C  K  R :   I  V  H  A  S  L  T  D  L  N  S  F  Q  T  G  A  S  V  S  E  G  Q  :  E  E  T  L  P  V  T  H  S  G  G  L  D  E  V  S  V  P  A  E  D  G  G  M  D  V  T  P  E  R  V  S  S  P  I  I  K  P  V  K  S  I  K  A  G  Q  K  A  T  L   </second_frame>
            <third_frame>   S  S  N  A  *  R  L  N  F  *  Q  Q  K  C  L  L  K  K  Q  L  M  R  I  R  S  K  I  I  I  V  D  *  L  M  K  V  A  M  Y  C  L  T  S  M  M  A  T  V  *  F  F  L  V  L  L  L  P   : R  H  *  K  L  G  I  R  S  V  L  F  S  L  L  *  V  V  H  S  G  L  C  F  K  W  S  R  E  K  K  E  P  F  *  L  V  L  L  R  M  Q  K  :  V  T  A  L  K  K  K  T  W  M  D  L  K  T  T  V  R  L  L  I  I  I  L  L  R  V  S  L  V  K  I  L  T  R  C  E   : S  R  E  Q  K  G  M  K  *  L  K  H  S  L  Q  T  V  Q  L  L  R  R  R  H  Y  F  H  K :   I  S  I  G  L  R  N  R  R  N  M  H  L  E  Y  F  *  G  A  P  L  H  E   : A  F  V  R  P  T  S  R  N  I  L  K  K  S   : D  S  C  E  W  M  H  Y  L  Y  C  S  P  W  G  M  L  L  Q  M  Q  M  Y  L  *  W  T  C  S  V  V  F  L  L  V  L  L  Q  N  D  L  E  :  V  L  V  M  C  A  I  L  I  V  D  H  H  H  I  L  S  I  S  Q  G  C  L  I  *  A  M  K  S  V  K   : E  S  C  M  H  H  *  P  T  *  I  H  F  K  L  E  L  Q  C  L  R  V  R :   K  K  P  Y  L  S  L  I  L  V  V  *  T  K  L  V  C  Q  L  K  M  V  A  W  M  *  H  L  R  E  F  L  L  Q  *  S  S  L  L  N  L  *  K  Q  V  R  K  Q  P  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33031" stop="32868"/>
                    <exon start="32713" stop="32586"/>
                    <exon start="31576" stop="31468"/>
                    <exon start="31029" stop="30948"/>
                    <exon start="30877" stop="30807"/>
                    <exon start="30129" stop="30088"/>
                    <exon start="29805" stop="29681"/>
                    <exon start="29377" stop="29284"/>
                    <exon start="29129" stop="29063"/>
                    <exon start="28950" stop="28801"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLKIEFLAAKMSIEEAVDEDSKQNHNSRLTYEGCNVLLDINDGDRLVFSRLTAASTLKIGNKKCSLQPLIGCPFGSLFQVEPGKEGTFLTRFVENAEGNGLEEKDVDGSKDNRALVDNNTAQSLTSEDIDEMRKQGAKGDEIVEALIANSATFEKKTLFSQDKYRVKKQKKYAPRVLLRRPFARSICEAYFKKHPEKIGFMRVDALSLLLSLGNVTANADVLVVDMLSGILTGAIAERLGGTGYVCNTYRGSSPYPVDITRMFNLSDEICKRIVHASLTDLNSFQTGASVSEGQEETLPVTHSGGLDEVSVPAEDGGMDVTPERVSSPIIKPVKSIKAGQKATL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="56961" PGL_stop="60169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56961" e_stop="57081"/>
            <exon e_start="57228" e_stop="57326"/>
            <exon e_start="57409" e_stop="57459"/>
            <exon e_start="58763" e_stop="58936"/>
            <exon e_start="59239" e_stop="59298"/>
            <exon e_start="59827" e_stop="60169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.658" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56961" e_stop="57081" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.799">
            <gDNA_intron_boundary i_start="57082" i_stop="57227" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57228" e_stop="57326" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.993">
            <gDNA_intron_boundary i_start="57327" i_stop="57408" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57409" e_stop="57459" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.658">
            <gDNA_intron_boundary i_start="57460" i_stop="58762" i_length="1303"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58763" e_stop="58936" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58937" i_stop="59238" i_length="302"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59239" e_stop="59298" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.713" acc_prob="0.993">
            <gDNA_intron_boundary i_start="59299" i_stop="59826" i_length="528"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="59827" e_stop="60169" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56961" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58936"/>
              <exon start="59239" stop="59298"/>
              <exon start="59827" stop="60169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57028" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58936"/>
              <exon start="59239" stop="59298"/>
              <exon start="59827" stop="60081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6816-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG : ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG : GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG : TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG : GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG : GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAGAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATACGAA</gDNA_template>
            <first_frame> S  L  A  P  Q  L  *  P  *  G  L  F  A  G  F  Y  K  L  K  N  Q  R  D  F  F  N  C  F  Y  S  C  F  A  C  R  S  S  E  Q  N   : D  P  F  Y  I  A  S  E  Q  A  R  K  D  S  F  G  *  V  L  Y  T  S  *  G  I  R  E  A  Q  G  G  I  *   : G  S  *  V  G  C  E  *  R  S  Q  I  H  Q  L  C  *   : V  P  Y  S  Q  G  N  I  Q  K  I  C  R  I  I  F  L  T  L  C  *  Y  H  R  Q  R  V  G  L  F  R  V  H  P  L  V  C  G  D  F  G  S  L  L  Q  Q  C  L  *  A  G  F  G  F  Q  F  P  Q   : G  I  S  D  I  R  *  V  Y  S  C  W  G  A  P  G  N  K  *  E   : G  N  H  R  E  N  G  R  V  G  E  A  G  V  K  N  S  D  A  L  L  K  S  Q  N  K  H  L  P  F  P  S  S  P  A  L  L  F  R  L  A  V  F  T  A  L  D  I  L  Y  P  V  D  T  F  M  L  M  W  P  H  L  I  Q  D  L  F  I  H  T  F  K  G  S  L  Q  V  *  I  *  M  S  L  S  I  P  S  L  N  M  N  I  F  I  F  C  *  L  Q  K  L  Y  C  C  W  K  *  E  K  G  Y  F  N  T   </first_frame>
            <second_frame>  L  W  H  L  S  C  D  P  E  G  F  L  L  V  F  T  N  *  R  I  K  E  I  F  S  I  V  S  T  A  V  L  P  A  D  L  L  N  K  M  :  I  R  F  I  L  L  Q  N  R  Q  G  K  T  R  L  A  K  Y  Y  I  P  L  E  E  S  E  K  H  K  V  E  Y  E  :  V  H  R  L  V  V  N  R  D  P  K  F  T  N  F  V  E  :  F  R  T  H  K  V  I  Y  R  R  Y  A  G  L  F  F  S  L  C  V  D  I  T  D  N  E  L  A  Y  L  E  S  I  H  L  F  V  E  I  L  D  H  F  F  S  N  V  C  E  L  D  L  V  F  N  F  H  K  :  V  Y  L  I  L  D  E  F  I  L  A  G  E  L  Q  E  T  S  K  R  :  A  I  I  E  R  M  G  E  L  E  K  Q  E  *  R  T  P  M  L  C  S  R  V  K  T  N  T  C  L  F  L  H  H  L  H  F  S  S  G  W  L  Y  L  L  H  *  T  F  C  I  P  L  I  P  S  C  *  C  G  L  I  *  Y  K  I  C  S  F  I  H  L  K  V  V  C  K  F  K  Y  E  C  L  Y  L  F  P  V  *  I  *  I  S  L  S  F  V  N  S  R  N  Y  I  V  V  G  S  R  K  R  V  I  S  I  R  </second_frame>
            <third_frame>   S  G  T  S  V  V  T  L  R  A  F  C  W  F  L  Q  I  K  E  S  K  R  F  F  Q  L  F  L  Q  L  F  C  L  Q  I  F  *  T  K  * :   S  V  L  Y  C  F  R  T  G  K  E  R  L  V  W  L  S  I  I  Y  L  L  R  N  P  R  S  T  R  W  N  M  R :   F  I  G  W  L  *  I  E  I  P  N  S  P  T  L  L  S :   S  V  L  T  R  *  Y  T  E  D  M  Q  D  Y  F  S  H  F  V  L  I  S  Q  T  T  S  W  L  I  *  S  P  S  T  C  L  W  R  F  W  I  T  S  S  A  M  S  V  S  W  I  W  F  S  I  S  T  R :   Y  I  *  Y  *  M  S  L  F  L  L  G  S  S  R  K  Q  V  R  G :   Q  S  S  R  E  W  E  S  W  R  S  R  S  E  E  L  R  C  F  A  Q  E  S  K  Q  T  L  A  F  S  F  I  T  C  T  S  L  P  A  G  C  I  Y  C  I  R  H  S  V  S  R  *  Y  L  H  V  D  V  A  S  F  N  T  R  F  V  H  S  Y  I  *  R  *  F  A  S  L  N  M  N  V  S  I  Y  S  Q  F  K  Y  E  Y  L  Y  L  L  L  T  P  E  T  I  L  L  L  E  V  G  K  G  L  F  Q  Y  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57016" stop="57081"/>
                    <exon start="57228" stop="57326"/>
                    <exon start="57409" stop="57459"/>
                    <exon start="58763" stop="58936"/>
                    <exon start="59239" stop="59298"/>
                    <exon start="59827" stop="59868"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIKEIFSIVSTAVLPADLLNKMIRFILLQNRQGKTRLAKYYIPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="65707" PGL_stop="62652"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65707" e_stop="65583"/>
            <exon e_start="64554" e_stop="64373"/>
            <exon e_start="64292" e_stop="64235"/>
            <exon e_start="63856" e_stop="63735"/>
            <exon e_start="63601" e_stop="63394"/>
            <exon e_start="63308" e_stop="63130"/>
            <exon e_start="63054" e_stop="63000"/>
            <exon e_start="62876" e_stop="62807"/>
            <exon e_start="62730" e_stop="62652"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.830" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65707" e_stop="65583" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.830" acc_prob="0.994">
            <gDNA_intron_boundary i_start="65582" i_stop="64555" i_length="1028"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64554" e_stop="64373" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64372" i_stop="64293" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64292" e_stop="64235" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.699">
            <gDNA_intron_boundary i_start="64234" i_stop="63857" i_length="378"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63856" e_stop="63735" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.943" acc_prob="0.771">
            <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63601" e_stop="63394" e_length="208"/>
          </exon>
          <intron i_serial="5" don_prob="0.886" acc_prob="0.963">
            <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63308" e_stop="63130" e_length="179"/>
          </exon>
          <intron i_serial="6" don_prob="0.866" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63129" i_stop="63055" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="63054" e_stop="63000" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62999" i_stop="62877" i_length="123"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62876" e_stop="62807" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62806" i_stop="62731" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="62730" e_stop="62652" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65707" stop="65583"/>
              <exon start="64554" stop="64373"/>
              <exon start="64292" stop="64235"/>
              <exon start="63856" stop="63735"/>
              <exon start="63601" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62807"/>
              <exon start="62730" stop="62652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7062" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGG : ATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG : TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG : TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG : ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG : TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA : GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG : GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA : GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTA</gDNA_template>
            <first_frame> K  Q  S  N  *  S  F  S  C  E  I  L  R  E  S  G  N  Q  K  P  K  A  S  V  F  P  F  V  K  Q  K  Y  S  Q  I  A  K  S  L  L  F  G :   L  *  G  R  K  *  N  N  C  E  E  I  E  E  R  G  R  K  I  E  W  C  W  *  S  L  V  Q  Y  E  Q  H  *  N  G  L  F  K  V  *  *  *  R  *  D  S  F  Q  C  F  C  S  E  A  I  *  V  S  Q  K   : V  F  *  *  V  *  W  S  R  S  C  F  C  S  S  E  S  S  F  S :   Y  Q  E  E  N  S  Q  A  H  L  S  T  F  A  D  F  Q  K  G  E  S  H  V  R  W  S  *  N  T  K  E  I  W  Q  Q  V  *  A  *  F   : D  S  L  W  F  K  S  V  Y  K  G  G  A  *  L  S  N  H  Q  R  *  R  G  S  G  *  N  L  V  C  F  G  W  Y  D  P  R  C  *  H  L  E  R  K  Q  N  K  *  S  T  S  *  S  E  I  F  G  L  T  R  T  *  G  F  C  N  R  K  W  S :   C  N  N  R  T  G  H  K  D  K  Q  L  P  I  Q  C  *  S  F  E  A  V  S  R  H  S  C  F  C  W  R  S  C  Q  I  K  I  I  S  *  C  F  P  V  *  Y  I  H  Q  H  R  A  A  R  N  F  I  A  T   : S  C  C  L  S  S  Q  Q  T  K  H  T  Q  G  E  *  E  *  W :   F  I  V  V  A  R  L  V  C  S  R  V  I  L  F  R  H  T  *  F  F  T  T  :  V  S  N  W  Q  I  S  C  L  D  R  E  R  W  H  *  S  S  S  S  K  C  K  I  L  S  </first_frame>
            <second_frame>  N  R  V  T  D  R  F  R  V  K  S  *  E  N  R  V  I  K  N  R  K  L  R  F  F  R  L  L  S  R  N  I  L  R  *  L  N  R  Y  Y  L   : D  C  K  G  G  N  E  I  I  A  K  K  S  K  K  G  G  E  R  L  S  G  A  G  E  V  *  S  S  M  N  N  I  E  M  G  C  L  K  S  D  D  N  D  E  I  H  S  N  V  S  V  R  K  R  F  K  F  P  K  K  :  F  F  D  E  C  N  G  V  D  H  A  S  V  P  R  K  V  R  S   : V  I  K  K  R  I  R  K  L  I  S  P  P  L  P  I  S  K  K  A  N  R  M  S  D  G  A  E  T  L  R  K  Y  G  N  K  S  K  L  N  L  :  T  H  C  G  S  S  R  C  I  K  E  E  L  D  C  P  I  T  K  D  E  E  E  V  A  E  T  L  Y  A  L  A  G  M  I  P  D  V  D  T  L  S  E  S  K  I  N  S  Q  L  P  E  V  K  S  L  D  L  P  E  P  E  A  S  V  I  A  S  G   : V  V  T  T  E  Q  D  I  R  T  N  S  S  Q  F  S  A  E  A  L  K  Q  F  P  D  I  A  V  S  A  G  E  A  A  K  S  K  S  F  H  D  A  S  P  C  D  T  F  I  N  T  E  Q  L  E  I  S  S  Q  Q  :  V  V  A  Y  Q  A  N  K  Q  N  T  H  K  E  N  R  N  N   : G  S  L  L  W  P  G  L  S  A  A  G  S  S  C  S  D  I  L  D  S  S  P  Q :   F  P  I  G  K  F  P  V  W  I  G  S  A  G  T  D  H  Q  A  Q  N  A  K  S  C  L </second_frame>
            <third_frame>   T  E  *  L  I  V  F  V  *  N  L  E  R  I  G  *  S  K  T  E  S  F  G  F  S  V  C  *  A  E  I  F  S  D  S  *  I  V  T  I  W  :  I  V  R  E  E  M  K  *  L  R  R  N  R  R  K  G  E  K  D  *  V  V  L  V  K  F  S  P  V  *  T  T  L  K  W  V  V  *  S  L  M  I  T  M  R  F  I  P  M  F  L  F  G  S  D  L  S  F  P  K  S :   F  L  M  S  V  M  E  *  I  M  L  L  F  L  G  K  F  V  Q  :  L  S  R  R  E  F  A  S  S  S  L  H  L  C  R  F  P  K  R  R  I  A  C  Q  M  E  L  K  H  *  G  N  M  A  T  S  L  S  L  I  * :   L  I  V  V  Q  V  G  V  *  R  R  S  L  I  V  Q  S  P  K  M  K  R  K  W  L  K  P  C  M  L  W  L  V  *  S  Q  M  L  T  P  *  A  K  A  K  *  I  V  N  F  L  K  *  N  L  W  T  Y  Q  N  L  R  L  L  *  S  Q  V  E  :  L  *  Q  Q  N  R  T  *  G  Q  T  A  P  N  S  V  L  K  L  *  S  S  F  Q  T  *  L  F  L  L  E  K  L  P  N  Q  N  H  F  M  M  L  P  R  V  I  H  S  S  T  Q  S  S  *  K  F  H  R  N  K :   L  L  L  I  K  P  T  N  K  T  H  T  R  R  I  G  I  M  :  V  H  C  C  G  Q  A  C  L  Q  Q  G  H  L  V  P  T  Y  L  I  L  H  H   : S  F  Q  L  A  N  F  L  S  G  S  G  A  L  A  L  I  I  K  L  K  M  Q  N  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64474" stop="64373"/>
                    <exon start="64292" stop="64235"/>
                    <exon start="63856" stop="63735"/>
                    <exon start="63601" stop="63394"/>
                    <exon start="63308" stop="63130"/>
                    <exon start="63054" stop="63000"/>
                    <exon start="62876" stop="62807"/>
                    <exon start="62730" stop="62652"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSMNNIEMGCLKSDDNDEIHSNVSVRKRFKFPKKFFDECNGVDHASVPRKVRSVIKKRIRKLISPPLPISKKANRMSDGAETLRKYGNKSKLNLTHCGSSRCIKEELDCPITKDEEEVAETLYALAGMIPDVDTLSESKINSQLPEVKSLDLPEPEASVIASGVVTTEQDIRTNSSQFSAEALKQFPDIAVSAGEAAKSKSFHDASPCDTFINTEQLEISSQQVVAYQANKQNTHKENRNNGSLLWPGLSAAGSSCSDILDSSPQFPIGKFPVWIGSAGTDHQAQNAKSCL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="97160" PGL_stop="91732"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97160" e_stop="97018"/>
            <exon e_start="96521" e_stop="96401"/>
            <exon e_start="96310" e_stop="96157"/>
            <exon e_start="96077" e_stop="95997"/>
            <exon e_start="95895" e_stop="95784"/>
            <exon e_start="95701" e_stop="95575"/>
            <exon e_start="95490" e_stop="95352"/>
            <exon e_start="94610" e_stop="94493"/>
            <exon e_start="94201" e_stop="94002"/>
            <exon e_start="93898" e_stop="93683"/>
            <exon e_start="93576" e_stop="93411"/>
            <exon e_start="93330" e_stop="93189"/>
            <exon e_start="93101" e_stop="92951"/>
            <exon e_start="92711" e_stop="92310"/>
            <exon e_start="92224" e_stop="91732"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.451" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.672" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97160" e_stop="97018" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96521" e_stop="96401" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96310" e_stop="96157" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.889" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96077" e_stop="95997" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95895" e_stop="95784" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="95701" e_stop="95575" e_length="127"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="95490" e_stop="95352" e_length="139"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.451">
            <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="94610" e_stop="94493" e_length="118"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="94201" e_stop="94002" e_length="200"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="93898" e_stop="93683" e_length="216"/>
          </exon>
          <intron i_serial="10" don_prob="0.909" acc_prob="0.990">
            <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="93576" e_stop="93411" e_length="166"/>
          </exon>
          <intron i_serial="11" don_prob="0.972" acc_prob="0.986">
            <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="93330" e_stop="93189" e_length="142"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.953">
            <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="93101" e_stop="92951" e_length="151"/>
          </exon>
          <intron i_serial="13" don_prob="0.998" acc_prob="0.672">
            <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="92711" e_stop="92310" e_length="402"/>
          </exon>
          <intron i_serial="14" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="92224" e_stop="91732" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97160" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95575"/>
              <exon start="95490" stop="95352"/>
              <exon start="94610" stop="94493"/>
              <exon start="94201" stop="94002"/>
              <exon start="93898" stop="93683"/>
              <exon start="93576" stop="93411"/>
              <exon start="93330" stop="93189"/>
              <exon start="93101" stop="92951"/>
              <exon start="92711" stop="92310"/>
              <exon start="92224" stop="91747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97156" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95575"/>
              <exon start="95490" stop="95352"/>
              <exon start="94610" stop="94493"/>
              <exon start="94201" stop="94002"/>
              <exon start="93898" stop="93683"/>
              <exon start="93576" stop="93411"/>
              <exon start="93330" stop="93189"/>
              <exon start="93101" stop="92951"/>
              <exon start="92711" stop="92310"/>
              <exon start="92224" stop="91732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8346-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96480" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95575"/>
              <exon start="95490" stop="95476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACTCTACTTTGAACGCTGCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAG : GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAG : GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGAT : GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAG : ATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG : CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACA : ATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAG : GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACAT : CTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG : GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG : GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG : ATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC : AACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAG : GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG : GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGT</gDNA_template>
            <first_frame> N  T  L  L  *  T  L  L  V  K  S  S  A  G  D  L  *  S  *  N  S  G  D  G  D  N  E  E  V  E  D  P  V  R  P  V  S  V  M  P  D  L  P  C  S  R  S  R :   S  K  D  T  G  K  C  R  S  *  F  *  C  T  S  R  S  T  K  G  *  G  E  V  W  C  C  S  *  W  F  I  D  *  F  *  C  G  *  E  :  G  S  *  V  Y  V  K  E  N  S  P  S  *  C  G  E  V  *  V  P  G  *  G  L  S  S  Y  G  H  P  Y  Q  L  S  L  Q  *  Q  G  H  L  F  E  G  A  D  F  Q  C  F  *   : C  T  G  Q  D  *  V  P  C  T  H  *  Q  G  G  S  W  *  G  *  *  Y  *  A  *  D  S   : D  *  T  *  *  R  K  E  N  S  F  H  S  R  Q  R  C  W  N  D  Q  G  G  S  K  K  E  F  G  N  H  S  *  I  W  N  F  S :   F  C  R  E  D  A  D  K  W  *  P  *  P  D  W  T  I  W  C  W  V  L  L  C  V  S  C  G  *  L  C  *  S  H  Q  Q  A  Q  *  R  Q  T  :  I  C  L  G  I  K  G  R  W  G  I  C  H  F  *  R  Y  M  E  *  T  S  W  P  W  N  *  N  *  T  A  S  K  R  *  S  R  G  I  F  G  *  A  Q  T  K   : G  I  G  Q  E  I  F  *  I  H  Q  L  P  Y  K  F  M  G  K  Q  R  G  *  E  G  S  S  C  *  *  G  R  V  S  *  *  R  G  N  I :   *  K  H  F  L  *  G  R  G  R  R  R  R  C  R  E  G  R  R  *  E  E  A  *  N  *  D  S  E  G  N  H  I  *  V  G  A  F  K  *  H  E  S  Y  M  A  S  K  P  K  G  S  Y  R  *  R  I  *  *  V  L  S  L  S  G  K   : G  L  Q  *  R  *  T  H  G  V  E  S  L  Q  C  *  R  *  C  R  V  Q  G  C  S  I  H  P  S  *  S  P  S  *  F  V  *  E  L  L  Q  H  K  A  I  Q  L  E  V  I  C  Q  T  G  F  H  L  R  *  I  *  *  I  V  A  Q  V  L  E  F  P  N   : G  S  C  *  F  *  H  L  T  P  Q  C  L  K  R  N  A  S  A  A  Q  Q  F  E  D  N  *  E  K  T  H  P  *  G  P  *  H  D  P  Q  T  C  R  R  G  S  R  *  N  *  *  Q  G  E  E  R :   C  *  R  V  Q  *  *  K  *  E  E  R  S  I  C  Q  I  L  E  *  I  W  K  V  D  *  A  W  Y  Y  R  R  R  N  *  Q  K  P  L  S  *  T  S  S  I  *  D  :  N  Q  I  R  W  *  I  N  F  T  *  P  I  H  L  K  N  E  I  K  S  K  G  Y  L  L  H  H  R  C  Q  Q  R  T  V  G  E  I  S  L  P  *  K  T  *  *  E  R  L  *   : G  Y  I  L  H  R  S  S  R  *  I  P  H  A  I  S  Y  G  L  *  R  Q  K  V  P  E  C  V  *  R  G  I  K  A  *  G  F  E  N  Q  R  A  Q  G  V  I  Q  G  A  N  *  V  V  E  E  Y  S  C  *  *  Q  R  *  R  C  Q  D  K  Q  P  F  G  R  H  P  L  C  C  G  N  I  K  I  R  M  E  C  I  Y  G  E  N  N  A  F  T  N  P  V  R  C  K  Q  A  S  I  H  A  W  *  K  G  A  *  N  Q  S  *  A  P  N  Y  Q  G  T  S  G  E  S  S  N  R  P  R   : G  R  E  C  E  V  D  S  K  T  Y  I  P  N  S  F  N  G  E  W  L  R  S  E  *  S  K  G  F  C  L  P  H  L  Q  L  S  K  E  Q  S  K  H  *  P  *  C  N  S  *  G  R  R  R  R  S  *  R  T  *  D  *  N  Q  G  R  R  G  V  C  I  G  *  V  *  T  Q  G  *  A  I  D  S  V  L  R  Y  V  P  F  S  R  K  Q  H  V  V  V  V  C  F  S  T  R  E  E  C  R  N  S  L  V  H  S  L  K  L  K  K  N  F  V  S  L  A  F  S  L  F  *  C  M  S  L  S  F  R  V  T  N  L  E  G  L  V  F  S  *  L  E  L  V  K  A  L  V  F  L  R  K  S  T  F  D   </first_frame>
            <second_frame>  T  L  Y  F  E  R  C  L  *  N  H  R  P  A  T  S  K  V  E  I  P  V  T  E  T  M  R  K  W  K  I  P  F  V  L  F  L  L  C  L  I  Y  L  V  P  D  Q   : G  R  K  I  Q  A  N  A  E  A  D  S  D  A  P  V  D  P  P  K  V  E  E  K  F  G  A  V  P  N  G  L  S  T  D  S  D  V  A  K  R :   E  A  E  S  M  S  R  K  T  L  R  A  S  A  E  K  F  E  F  Q  A  E  V  S  R  L  M  D  I  L  I  N  S  L  Y  S  N  K  D  I  F  L  R  E  L  I  S  N  A  S  D  :  A  L  D  K  I  R  F  L  A  L  T  D  K  E  V  L  G  E  G  D  N  T  K  L  E  I  Q  :  I  K  L  D  K  E  K  K  I  L  S  I  R  D  R  G  V  G  M  T  K  E  D  L  R  K  N  L  G  T  I  A  K  S  G  T  S   : A  F  V  E  K  M  Q  T  S  G  D  L  N  L  I  G  Q  F  G  V  G  F  Y  S  V  Y  L  V  A  D  Y  V  E  V  I  S  K  H  N  D  D  K  Q :   Y  V  W  E  S  K  A  D  G  A  F  A  I  S  E  D  T  W  N  E  P  L  G  R  G  T  E  I  R  L  H  L  R  D  E  A  G  E  Y  L  D  E  L  K  L  K  :  E  L  V  K  K  Y  S  E  F  I  N  F  P  I  N  L  W  A  S  K  E  V  E  K  E  V  P  A  D  E  D  E  S  V  D  E  E  E  T   : S  E  S  T  S  S  E  E  E  G  E  E  E  D  A  E  K  A  E  D  E  K  K  P  K  T  K  T  V  K  E  T  T  Y  E  W  E  L  L  N  D  M  K  A  I  W  L  R  S  P  K  E  V  T  D  E  E  Y  N  K  F  Y  H  S  L  A  K  :  D  F  S  E  D  K  P  M  A  W  S  H  F  N  A  E  G  D  V  E  F  K  A  V  L  F  I  P  P  K  A  P  H  D  L  Y  E  S  Y  Y  N  T  K  Q  S  N  L  K  L  Y  V  R  R  V  F  I  S  D  E  F  N  E  L  L  P  K  Y  L  N  F  L  M  :  G  L  V  D  S  D  T  L  P  L  N  V  S  R  E  M  L  Q  Q  H  S  S  L  K  T  I  K  K  K  L  I  R  K  A  L  D  M  I  R  K  L  A  E  E  D  P  D  E  T  N  D  K  E  K  R   : D  V  E  E  S  S  D  E  N  E  K  K  G  Q  Y  A  K  F  W  N  E  F  G  K  S  I  K  L  G  I  I  E  D  A  T  N  R  N  R  L  A  K  L  L  R  F  E  T :   T  K  S  D  G  K  L  T  S  L  D  Q  Y  I  S  R  M  K  S  S  Q  K  D  I  F  Y  I  T  G  A  S  K  E  Q  L  E  K  S  P  F  L  E  R  L  N  K  K  D  Y  E  :  V  I  F  F  T  D  P  V  D  E  Y  L  M  Q  Y  L  M  D  Y  E  D  K  K  F  Q  N  V  S  K  E  G  L  K  L  K  D  S  K  T  K  E  L  K  E  S  F  K  G  L  T  K  W  W  K  N  T  L  A  S  D  N  V  E  D  V  K  I  S  S  R  L  A  D  T  P  C  V  V  V  T  S  K  Y  G  W  S  A  Y  M  E  K  I  M  H  S  Q  T  L  S  D  A  S  K  Q  A  Y  M  R  G  K  R  V  L  E  I  N  P  R  H  P  I  I  K  A  L  R  E  R  V  V  T  D  P  E  :  D  E  S  V  K  L  T  A  K  L  I  Y  Q  T  A  L  M  E  S  G  F  D  L  S  D  P  K  D  F  A  S  H  I  Y  S  S  V  K  S  S  L  N  I  S  P  D  A  T  V  E  E  E  E  D  E  A  E  E  P  E  T  E  T  K  A  E  E  E  S  A  S  D  E  S  E  L  K  D  E  L  *  I  V  S  *  D  M  F  L  F  P  G  N  N  T  L  L  W  Y  V  S  Q  H  V  K  N  V  G  I  V  *  F  I  V  L  N  L  K  R  I  L  S  V  L  H  F  R  C  F  S  V  *  V  C  R  S  V  *  Q  I  W  K  V  L  F  F  P  N  W  N  W  *  K  L  *  F  F  *  G  N  Q  L  L  T  </second_frame>
            <third_frame>   H  S  T  L  N  A  A  C  K  I  I  G  R  R  P  L  K  L  K  F  R  *  R  R  Q  *  G  S  G  R  S  R  S  S  C  F  C  Y  A  *  F  T  L  F  Q  I  K  :  V  E  R  Y  R  Q  M  Q  K  L  I  L  M  H  Q  *  I  H  Q  R  L  R  R  S  L  V  L  F  L  M  V  Y  R  L  I  L  M  W  L  R   : G  K  L  S  L  C  Q  G  K  L  S  E  L  V  R  R  S  L  S  S  R  L  R  S  L  V  L  W  T  S  L  S  T  L  S  T  V  T  R  T  S  F  *  G  S  *  F  P  M  L  L  M :   H  W  T  R  L  G  S  L  H  S  L  T  R  R  F  L  V  R  V  I  I  L  S  L  R  F  R :   L  N  L  I  K  K  R  K  F  F  P  F  A  T  E  V  L  E  *  P  R  R  I  *  E  R  I  W  E  P  *  L  N  L  E  L  Q  :  L  L  S  R  R  C  R  Q  V  V  T  L  T  *  L  D  N  L  V  L  G  F  T  L  C  I  L  W  L  T  M  L  K  S  S  A  S  T  M  T  T  N   : N  M  S  G  N  Q  R  Q  M  G  H  L  P  F  L  K  I  H  G  M  N  L  L  A  V  E  L  K  L  D  C  I  *  E  M  K  Q  G  N  I  W  M  S  S  N  *  R :   N  W  S  R  N  I  L  N  S  S  T  S  L  *  I  Y  G  Q  A  K  R  L  R  R  K  F  L  L  M  R  T  S  Q  L  M  K  R  K  H  :  L  K  A  L  P  L  R  K  R  E  K  K  K  M  Q  R  R  P  K  M  R  R  S  L  K  L  R  Q  *  R  K  P  H  M  S  G  S  F  *  M  T  *  K  L  Y  G  F  E  A  Q  R  K  L  Q  M  K  N  I  I  S  S  I  T  L  W  Q  R :   T  S  V  K  I  N  P  W  R  G  V  T  S  M  L  K  V  M  *  S  S  R  L  F  Y  S  S  L  L  K  P  L  M  I  C  M  R  A  T  T  T  Q  S  N  P  T  *  S  Y  M  S  D  G  F  S  S  Q  M  N  L  M  N  C  C  P  S  T  *  I  S  *  W :   V  L  L  I  L  T  P  Y  P  S  M  S  Q  E  K  C  F  S  S  T  A  V  *  R  Q  L  R  K  N  S  S  V  R  P  L  T  *  S  A  N  L  P  K  R  I  Q  M  K  L  M  T  R  R  R  E  :  M  L  K  S  P  V  M  K  M  R  R  K  V  N  M  P  N  S  G  M  N  L  E  S  R  L  S  L  V  L  *  K  T  Q  L  T  E  T  A  *  L  N  F  F  D  L  R   : Q  P  N  Q  M  V  N  *  L  H  L  T  N  T  S  Q  E  *  N  Q  V  K  R  I  S  S  T  S  P  V  P  A  K  N  S  W  R  N  L  P  S  L  K  D  L  I  R  K  T  M  R :   L  Y  S  S  P  I  Q  *  M  N  T  S  C  N  I  L  W  T  M  K  T  K  S  S  R  M  C  L  K  R  D  *  S  L  R  I  R  K  P  K  S  S  R  S  H  S  R  G  *  L  S  G  G  R  I  L  L  L  V  T  T  L  K  M  S  R  *  A  A  V  W  P  T  P  L  V  L  W  *  H  Q  N  T  D  G  V  H  I  W  R  K  *  C  I  H  K  P  C  Q  M  Q  A  S  K  H  T  C  V  V  K  G  C  L  K  S  I  L  G  T  Q  L  S  R  H  F  G  R  E  *  *  Q  T  Q  R :   T  R  V  *  S  *  Q  Q  N  L  Y  T  K  Q  L  *  W  R  V  A  S  I  *  V  I  Q  R  I  L  P  P  T  S  T  A  Q  *  R  A  V  *  T  L  A  L  M  Q  Q  L  R  K  K  K  T  K  L  K  N  L  R  L  K  P  R  Q  K  R  S  L  H  R  M  S  L  N  S  R  M  S  Y  R  *  C  P  K  I  C  S  F  F  P  E  T  T  R  C  C  G  M  F  L  N  T  *  R  M  *  E  *  F  S  S  *  S  *  T  *  K  E  F  C  Q  S  C  I  F  V  V  L  V  Y  E  F  V  V  P  C  N  K  S  G  R  S  C  F  F  L  I  G  T  G  K  S  S  S  F  S  K  E  I  N  F  *  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97132" stop="97018"/>
                    <exon start="96521" stop="96401"/>
                    <exon start="96310" stop="96157"/>
                    <exon start="96077" stop="95997"/>
                    <exon start="95895" stop="95784"/>
                    <exon start="95701" stop="95575"/>
                    <exon start="95490" stop="95352"/>
                    <exon start="94610" stop="94493"/>
                    <exon start="94201" stop="94002"/>
                    <exon start="93898" stop="93683"/>
                    <exon start="93576" stop="93411"/>
                    <exon start="93330" stop="93189"/>
                    <exon start="93101" stop="92951"/>
                    <exon start="92711" stop="92310"/>
                    <exon start="92224" stop="91982"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2484</number_coding_nucleotides>
                  <number_encoded_amino_acids>828</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHRPATSKVEIPVTETMRKWKIPFVLFLLCLIYLVPDQGRKIQANAEADSDAPVDPPKVEEKFGAVPNGLSTDSDVAKREAESMSRKTLRASAEKFEFQAEVSRLMDILINSLYSNKDIFLRELISNASDALDKIRFLALTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGVGMTKEDLRKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLDELKLKELVKKYSEFINFPINLWASKEVEKEVPADEDESVDEEETSESTSSEEEGEEEDAEKAEDEKKPKTKTVKETTYEWELLNDMKAIWLRSPKEVTDEEYNKFYHSLAKDFSEDKPMAWSHFNAEGDVEFKAVLFIPPKAPHDLYESYYNTKQSNLKLYVRRVFISDEFNELLPKYLNFLMGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKLAEEDPDETNDKEKRDVEESSDENEKKGQYAKFWNEFGKSIKLGIIEDATNRNRLAKLLRFETTKSDGKLTSLDQYISRMKSSQKDIFYITGASKEQLEKSPFLERLNKKDYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLKDSKTKELKESFKGLTKWWKNTLASDNVEDVKISSRLADTPCVVVTSKYGWSAYMEKIMHSQTLSDASKQAYMRGKRVLEINPRHPIIKALRERVVTDPEDESVKLTAKLIYQTALMESGFDLSDPKDFASHIYSSVKSSLNISPDATVEEEEDEAEEPETETKAEEESASDESELKDEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 64 chains have been computed
$ 
$ memory statistics:
$ 20776 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 2308 bytes was the average size of a spliced alignment
$ 11512 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2302 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 64 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-10 05:42:14
-->
